RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8131
(198 letters)
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 105 bits (265), Expect = 8e-30
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 84 QIITSGGVT-YKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCK 142
++I S T +N+ WH + F C +C + LAG+ + DKP C C+ + A C C
Sbjct: 11 ELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCH 70
Query: 143 KPITGIGGTRFISFEDRHWH--NDCFMCASCQSSLVGRGFITDGEDIICPDCAKAKL 197
I + +++ + WH +CF+C+ C L+G+ F+ + C K ++
Sbjct: 71 NAID--PEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 125
Score = 89.8 bits (223), Expect = 2e-23
Identities = 32/137 (23%), Positives = 47/137 (34%), Gaps = 31/137 (22%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLRE 60
+ + + WH K F C C + + + ++ + C CY + A C C+
Sbjct: 19 TQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAI----- 73
Query: 61 KGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWH--RECFTCSNCSTSLAGQRFT 118
VTY N WH ECF CS CS L GQ+F
Sbjct: 74 ------------------------DPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFM 109
Query: 119 SREDKPFCADCFGELFA 135
E FC+ + +
Sbjct: 110 PVEGMVFCSVECKKRMS 126
Score = 48.2 bits (115), Expect = 7e-08
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 137 RCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDC 192
RC C + I + E+++WH F C C S L G ++ + +C C
Sbjct: 5 RCAGCDELIF---SNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPC 57
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 96.4 bits (240), Expect = 1e-25
Identities = 27/174 (15%), Positives = 49/174 (28%), Gaps = 36/174 (20%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLRE 60
++ R WH KC C C P+ + F R + +YC + + ++F T+C C
Sbjct: 22 LKALDRHWHSKCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFGTKCAACQLGI----- 75
Query: 61 KGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLAG--QRFT 118
T ++ +H CF C C LA + +
Sbjct: 76 ------------------------PPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYL 111
Query: 119 SREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQ 172
+ + C + G + H+ +
Sbjct: 112 MEDSRLVCKADYETAKQGGSGGSGGSGGG----TPMVAASPERHDGGLQANPVE 161
Score = 75.6 bits (186), Expect = 9e-18
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGG 150
+ + WH +C CS+C LA + F SR + +C D F + F +C +C+ I
Sbjct: 22 LKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ- 79
Query: 151 TRFISFEDRHWHNDCFMCASCQSSLVG--RGFITDGEDIICPDC 192
+D +H CF C C+ L ++ + ++C
Sbjct: 80 -VVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKAD 122
Score = 65.2 bits (159), Expect = 1e-13
Identities = 14/113 (12%), Positives = 26/113 (23%), Gaps = 33/113 (29%)
Query: 1 MEYKTRQWHEKCFACVVCKTPI--GTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRL 58
+ +H CFACVVCK + G + ++ + + C YE +
Sbjct: 82 RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGS---- 137
Query: 59 REKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTS 111
+ + H +
Sbjct: 138 ---------------------------GGGTPMVAASPERHDGGLQANPVEVQ 163
Score = 44.4 bits (105), Expect = 4e-06
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 137 RCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDC 192
C C + I + DRHWH+ C C+ C L R F + C D
Sbjct: 8 MCAGCDQHILD---RFILKALDRHWHSKCLKCSDCHVPLAERCFSRGES-VYCKDD 59
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 92.4 bits (229), Expect = 7e-24
Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 18/156 (11%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKT--------FFR 57
+H+ CF C+VCK + + + EIYC +CY +K+ +
Sbjct: 28 SSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGES 87
Query: 58 LREKGTFQSHSGRINKVYSILFYFLFQ----------IITSGGVTYKNEPWHRECFTCSN 107
L K N S + + + + V + WH+ CF C+
Sbjct: 88 LGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAK 147
Query: 108 CSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKK 143
C SL ++ + +C C+ + F + + +
Sbjct: 148 CGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQ 183
Score = 55.4 bits (133), Expect = 6e-10
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTF 55
+ + WH+ CF C C + + + ++ EIYC CY + F + +
Sbjct: 131 VIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGA 185
Score = 53.9 bits (129), Expect = 2e-09
Identities = 24/151 (15%), Positives = 39/151 (25%), Gaps = 33/151 (21%)
Query: 45 ATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFT 104
+C C K + E V + +H+ CF
Sbjct: 7 GKKCGVCQKAVYFAEE------------------------------VQCEGSSFHKSCFL 36
Query: 105 CSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHND 164
C C +L D+ +C C+G+ + + G G E +
Sbjct: 37 CMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGM---GAGTLSTDKGESLGIKYE 93
Query: 165 CFMCASCQSSLVGRGFITDGEDIICPDCAKA 195
+ R G CP C +A
Sbjct: 94 EGQSHRPTNPNASRMAQKVGGSDGCPRCGQA 124
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 86.7 bits (215), Expect = 9e-23
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGG 150
V YKN WH CF C+ C LA + F ++++K C C + +C C K I G
Sbjct: 22 VHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIV--AG 79
Query: 151 TRFISFEDRHWHNDCFMCASC 171
+ + ++ WH DCF S
Sbjct: 80 DQNVEYKGTVWHKDCFSGPSS 100
Score = 70.1 bits (172), Expect = 3e-16
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 29/108 (26%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLRE 60
+ YK R WH+ CF C C P+ ++F+ ++ +I C C + + +C C K +
Sbjct: 22 VHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQ 81
Query: 61 KGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNC 108
V YK WH++CF+ +
Sbjct: 82 N-----------------------------VEYKGTVWHKDCFSGPSS 100
Score = 55.1 bits (133), Expect = 1e-10
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C C+KPI ++ + +++R WH+ CF CA C L F+ I+C
Sbjct: 1 GSSGSSGCVECRKPIGA--DSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCN 58
Query: 191 DC 192
C
Sbjct: 59 KC 60
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 83.5 bits (207), Expect = 1e-21
Identities = 43/107 (40%), Positives = 54/107 (50%), Gaps = 31/107 (28%)
Query: 34 IYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTY 93
CYE KFA RC +C+K +T GGVTY
Sbjct: 4 GSSGPCYENKFAPRCARCSK-------------------------------TLTQGGVTY 32
Query: 94 KNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140
+++PWHREC C+ C T LAGQ+FTSR++ P+C CFGELFA S
Sbjct: 33 RDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79
Score = 64.3 bits (157), Expect = 2e-14
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 122 DKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFI 181
C+ FA RC C K +T +++ D+ WH +C +C CQ+ L G+ F
Sbjct: 2 SSGSSGPCYENKFAPRCARCSKTLTQ----GGVTYRDQPWHRECLVCTGCQTPLAGQQFT 57
Query: 182 TDGEDIICPDC 192
+ ED C C
Sbjct: 58 SRDEDPYCVAC 68
Score = 56.2 bits (136), Expect = 3e-11
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
+ Y+ + WH +C C C+TP+ + F R+++ YC C+ E FA+
Sbjct: 30 VTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGP 77
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 82.9 bits (205), Expect = 2e-21
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 123 KPFCADCFGELFAKRCYSCKKPITGIG-GTRFISFEDRHWHNDCFMCASCQSSLVGRGFI 181
DC+ AK+C CK PITG G G+ +++E + WH+ CF C C +L + F+
Sbjct: 3 SGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFV 62
Query: 182 TDGEDIICPDCAK 194
E + CPDCAK
Sbjct: 63 FHQEQVYCPDCAK 75
Score = 66.0 bits (161), Expect = 5e-15
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 26/101 (25%)
Query: 33 EIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVT 92
+CY+ A +C C + + V
Sbjct: 3 SGSSGDCYKNFVAKKCAGCKNPITGFGKGSSV--------------------------VA 36
Query: 93 YKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGEL 133
Y+ + WH CF C CS +LA +RF +++ +C DC +L
Sbjct: 37 YEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77
Score = 48.2 bits (115), Expect = 3e-08
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEE 42
+ Y+ + WH+ CF C C + K F+ ++++YC +C ++
Sbjct: 35 VAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 83.0 bits (205), Expect = 2e-21
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C +C KPI+G+ G +FI F+D WH++CF C C SLVG+GF+T ++I C
Sbjct: 1 GSSGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQ 60
Query: 191 DCAK 194
C
Sbjct: 61 KCGS 64
Score = 54.5 bits (131), Expect = 1e-10
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRC 138
+ +++ WH ECF C CS SL G+ F ++ + FC C +
Sbjct: 24 ICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDIS 71
Score = 50.2 bits (120), Expect = 5e-09
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCN 52
+ ++ QWH +CF C C + K F+ + +EI+C C +
Sbjct: 24 ICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 85.4 bits (211), Expect = 3e-21
Identities = 30/185 (16%), Positives = 54/185 (29%), Gaps = 35/185 (18%)
Query: 10 EKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSG 69
E+ + C C++
Sbjct: 25 ERLITRLENTQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQ---------------- 68
Query: 70 RINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADC 129
I+ + + WH +C CS+C LA + F SR + +C D
Sbjct: 69 --------------HILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDD 113
Query: 130 FGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVG--RGFITDGEDI 187
F + F +C +C+ I +D +H CF C C+ L ++ + +
Sbjct: 114 FFKRFGTKCAACQLGIP--PTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRL 171
Query: 188 ICPDC 192
+C
Sbjct: 172 VCKAD 176
Score = 71.5 bits (175), Expect = 6e-16
Identities = 29/132 (21%), Positives = 45/132 (34%), Gaps = 32/132 (24%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLRE 60
++ R WH KC C C P+ + F R + +YC + + ++F T+C C
Sbjct: 76 LKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGI----- 129
Query: 61 KGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLA-GQRFTS 119
T ++ +H CF C C LA G F
Sbjct: 130 ------------------------PPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYL 165
Query: 120 RED-KPFCADCF 130
ED + C +
Sbjct: 166 MEDSRLVCKADY 177
Score = 47.2 bits (112), Expect = 4e-07
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 1 MEYKTRQWHEKCFACVVCKTPI--GTKSFIPREQEIYCANCYEEK 43
+ +H CFACVVCK + G + ++ + + C YE
Sbjct: 136 RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 81.4 bits (201), Expect = 6e-21
Identities = 37/64 (57%), Positives = 47/64 (73%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C C PI+G+GGT++ISFE+R WHNDCF C C SLVGRGF+T+ +DI+CP
Sbjct: 1 GSSGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCP 60
Query: 191 DCAK 194
DC K
Sbjct: 61 DCGK 64
Score = 57.1 bits (138), Expect = 1e-11
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRC 138
++++ WH +CF C CS SL G+ F + D C DC ++
Sbjct: 24 ISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71
Score = 52.9 bits (127), Expect = 5e-10
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
+ ++ RQWH CF C C + + F+ +I C +C ++
Sbjct: 24 ISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 75.1 bits (185), Expect = 2e-18
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 31/106 (29%)
Query: 35 YCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYK 94
+ F+ +C CN+ + ++
Sbjct: 5 SSGKDFLAMFSPKCGGCNR-------------------------------PVLENYLSAM 33
Query: 95 NEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140
+ WH ECF C +C TS + F + +PFC + S
Sbjct: 34 DTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79
Score = 62.7 bits (153), Expect = 1e-13
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 123 KPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFIT 182
F +F+ +C C +P+ ++S D WH +CF+C C +S F
Sbjct: 3 SGSSGKDFLAMFSPKCGGCNRPVLE----NYLSAMDTVWHPECFVCGDCFTSFSTGSFFE 58
Query: 183 DGEDIICPDCAKAK 196
C +
Sbjct: 59 LDGRPFCELHYHHR 72
Score = 53.9 bits (130), Expect = 2e-10
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
WH +CF C C T T SF + +C Y + +
Sbjct: 35 TVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGP 77
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 74.7 bits (184), Expect = 3e-18
Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 29/108 (26%)
Query: 33 EIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVT 92
C + + +C C K + V
Sbjct: 3 SGSSGKCTTREDSPKCKGCFKAIVAGDQN-----------------------------VE 33
Query: 93 YKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140
YK WH++CFTCSNC + F + + +C C FA S
Sbjct: 34 YKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPSS 81
Score = 65.5 bits (160), Expect = 9e-15
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 123 KPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFIT 182
C + +C C K I G + + ++ WH DCF C++C+ + F
Sbjct: 3 SGSSGKCTTREDSPKCKGCFKAIVA--GDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFP 60
Query: 183 DGEDIICPDC 192
GED C C
Sbjct: 61 KGEDFYCVTC 70
Score = 64.7 bits (158), Expect = 2e-14
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
+EYK WH+ CF C CK IGT SF P+ ++ YC C+E KFA+
Sbjct: 32 VEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGP 79
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 73.9 bits (182), Expect = 4e-18
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 84 QIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140
+ IT+GGVTY+ +PWH+ECF C+ C L+GQRFT+R+D +C +CF +L+A S
Sbjct: 13 KPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69
Score = 56.2 bits (136), Expect = 2e-11
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
+ Y+ + WH++CF C C+ + + F R+ YC NC+ + +A+
Sbjct: 20 VTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGP 67
Score = 55.4 bits (134), Expect = 5e-11
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C CKKPIT +++ ++ WH +CF+C +C+ L G+ F + C
Sbjct: 1 GSSGSSGCVQCKKPITT----GGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCL 56
Query: 191 DC 192
+C
Sbjct: 57 NC 58
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 71.3 bits (175), Expect = 3e-17
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 84 QIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRC 138
+ ITSGG+TY+++PWH +CF C CS LAGQRFT+ ED+ +C DC+ +
Sbjct: 13 KAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPS 67
Score = 56.2 bits (136), Expect = 2e-11
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C C K IT I+++D+ WH DCF+C +C L G+ F + C
Sbjct: 1 GSSGSSGCVKCNKAITS----GGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCV 56
Query: 191 DC 192
DC
Sbjct: 57 DC 58
Score = 55.5 bits (134), Expect = 4e-11
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
+ WH CF CV C + + F E + YC +CY+ +
Sbjct: 25 QPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPS 67
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 73.5 bits (180), Expect = 9e-17
Identities = 28/160 (17%), Positives = 43/160 (26%), Gaps = 34/160 (21%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIG--TKSFIPREQEIYCANCYEEKF--ATRCVKCNKTFF 56
+ WH +C C C+ +G S + I C N Y F + C C ++
Sbjct: 21 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSI- 79
Query: 57 RLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLA-GQ 115
+ + + +H +CFTCS C L G
Sbjct: 80 ----------------------------PASELVMRAQGNVYHLKCFTCSTCRNRLVPGD 111
Query: 116 RFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFIS 155
RF FC + G +
Sbjct: 112 RFHYINGSLFCEHDRPTALINGHLNSGGSGGSGGSGGDVM 151
Score = 67.0 bits (163), Expect = 2e-14
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLA--GQRFTSREDKPFCADCFGELF--AKRCYSCKKPIT 146
+ + WH C CS+C L G ++ C + + LF + C +C + I
Sbjct: 21 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIP 80
Query: 147 GIGGTRFISFEDRHWHNDCFMCASCQSSLV-GRGFITDGEDIICPDC 192
+ + +H CF C++C++ LV G F + C
Sbjct: 81 A--SELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 125
Score = 43.8 bits (103), Expect = 7e-06
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSL--VGRGFITDGEDII 188
G L KRC C I + D +WH+ C C+SCQ+ L +G T I+
Sbjct: 1 GSLSWKRCAGCGGKIAD---RFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMIL 57
Query: 189 CPDC 192
C +
Sbjct: 58 CRND 61
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 70.2 bits (172), Expect = 1e-16
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 29/105 (27%)
Query: 34 IYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTY 93
CY+ FA C +C + S + Y
Sbjct: 4 GSSGPCYDNTFANTCAECQQLIG-----------------------------HDSRELFY 34
Query: 94 KNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRC 138
++ +H CF C C SLA + FT ++ + C DC+ F+
Sbjct: 35 EDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGP 79
Score = 66.4 bits (162), Expect = 4e-15
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 122 DKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFI 181
C+ FA C C++ I +R + +EDRH+H CF C CQ SL F
Sbjct: 2 SSGSSGPCYDNTFANTCAECQQLIGH--DSRELFYEDRHFHEGCFRCCRCQRSLADEPFT 59
Query: 182 TDGEDIICPDC 192
+++C DC
Sbjct: 60 CQDSELLCNDC 70
Score = 57.1 bits (138), Expect = 1e-11
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
+ Y+ R +HE CF C C+ + + F ++ E+ C +CY F++
Sbjct: 32 LFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGP 79
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 70.9 bits (174), Expect = 3e-16
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 95 NEPWHRECFTCSNCSTSLA--GQRFTSREDKPFCADCFGELFAKR--CYSCKKPITGIGG 150
++ WH +C +C C L G+R + + C + LF + C SC K I
Sbjct: 22 DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA--Y 79
Query: 151 TRFISFEDRHWHNDCFMCASCQSSL-VGRGFITDGEDIICPDC 192
+ +D+ +H +CF CA+CQ VG ++ DI+C
Sbjct: 80 EMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 122
Score = 64.0 bits (156), Expect = 1e-13
Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 34/130 (26%)
Query: 6 RQWHEKCFACVVCKTPIGT--KSFIPREQEIYCANCYEEKFATR--CVKCNKTFFRLREK 61
+ WHE C +C +C +G + + C Y F C C+K
Sbjct: 23 QYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKR------- 75
Query: 62 GTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCSNCSTSLA-GQRFTSR 120
I + K++ +H ECF C+ C G R+
Sbjct: 76 ---------IRAYEMT-------------MRVKDKVYHLECFKCAACQKHFCVGDRYLLI 113
Query: 121 EDKPFCADCF 130
C
Sbjct: 114 NSDIVCEQDI 123
Score = 43.6 bits (103), Expect = 4e-06
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGT-KSFIPREQEIYCANCYEE 42
M K + +H +CF C C+ ++ +I C E
Sbjct: 83 MRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 125
Score = 35.1 bits (81), Expect = 0.004
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 137 RCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSL--VGRGFITDGEDIICPDC 192
C C++ I F+ D++WH DC C C L VGR +C
Sbjct: 4 TCGGCQQNIGD---RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 58
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 63.9 bits (156), Expect = 3e-14
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
+EY + WHE CF C C+ P+G++SF+P + YC CYE KFA+
Sbjct: 22 LEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGP 69
Score = 63.2 bits (154), Expect = 6e-14
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 29/98 (29%)
Query: 43 KFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHREC 102
++ C C +T K + Y + WH C
Sbjct: 3 SGSSGCSACGETVMPGSRK-----------------------------LEYGGQTWHEHC 33
Query: 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140
F CS C L + F + +C C+ FA S
Sbjct: 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71
Score = 56.6 bits (137), Expect = 2e-11
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C +C + + G+R + + + WH CF+C+ C+ L R F+ D C
Sbjct: 1 GSSGSSGCSACGETVMP--GSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCV 58
Query: 191 DC 192
C
Sbjct: 59 PC 60
Score = 31.6 bits (72), Expect = 0.028
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 105 CSNCSTS-LAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHN 163
CS C + + G R + + CF C C++P+ G F+ + H+
Sbjct: 8 CSACGETVMPGSRKLEYGGQTWHEHCF------LCSGCEQPL---GSRSFVPDKGAHYCV 58
Query: 164 DCF 166
C+
Sbjct: 59 PCY 61
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 64.4 bits (157), Expect = 3e-14
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 84 QIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140
Q+I + + WH E F C++C ++A F + +C C+ + FA S
Sbjct: 33 QVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89
Score = 55.9 bits (135), Expect = 4e-11
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
+ WH + F C CK + F+ + +YC CYE+ FA+
Sbjct: 45 KSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGP 87
Score = 55.1 bits (133), Expect = 8e-11
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 117 FTSREDKPFCADCFG-ELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSL 175
++ A+ C C + I G F+ + WH + F CA C++++
Sbjct: 6 SGDQDTLVQRAEHIPAGKRTPMCAHCNQVIRG----PFLVALGKSWHPEEFNCAHCKNTM 61
Query: 176 VGRGFITDGEDIICPDC 192
GF+ + + C C
Sbjct: 62 AYIGFVEEKGALYCELC 78
Score = 30.5 bits (69), Expect = 0.085
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 12/79 (15%)
Query: 90 GVTYKNEPWHRECFT--CSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITG 147
+ + E T C++C+ + G F K + + F C CK +
Sbjct: 11 TLVQRAEHIPAGKRTPMCAHCNQVIRG-PFLVALGKSWHPEEF------NCAHCKNTM-- 61
Query: 148 IGGTRFISFEDRHWHNDCF 166
F+ + + C+
Sbjct: 62 -AYIGFVEEKGALYCELCY 79
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 64.0 bits (156), Expect = 3e-14
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
MEYK WHE CF C C+ PIGTKSFIP++ + +C CYE++ A+
Sbjct: 22 MEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGP 69
Score = 62.0 bits (151), Expect = 1e-13
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 29/98 (29%)
Query: 43 KFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHREC 102
++ C +C KT K + YK WH C
Sbjct: 3 SGSSGCQECKKTIMPGTRK-----------------------------MEYKGSSWHETC 33
Query: 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140
F C C + + F ++++ FC C+ + A S
Sbjct: 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71
Score = 56.6 bits (137), Expect = 2e-11
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C CKK I GTR + ++ WH CF+C CQ + + FI C
Sbjct: 1 GSSGSSGCQECKKTIMP--GTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCV 58
Query: 191 DC 192
C
Sbjct: 59 PC 60
Score = 31.6 bits (72), Expect = 0.024
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 105 CSNCSTS-LAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHN 163
C C + + G R + + CF C+ C++PI G FI +++++
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCF------ICHRCQQPI---GTKSFIPKDNQNFCV 58
Query: 164 DCF 166
C+
Sbjct: 59 PCY 61
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 62.5 bits (152), Expect = 1e-13
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 88 SGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSC 141
GV + +H CF CS C L GQ F + E + +C C+ S
Sbjct: 19 GAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES-GPSS 71
Score = 52.4 bits (126), Expect = 7e-10
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKC 51
+ R +H CF C C+ + + F E+ YC CY
Sbjct: 22 VVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPSS 71
Score = 47.8 bits (114), Expect = 3e-08
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 137 RCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDC 192
C C + + G + DR +H CF+C++C++ L G+ F C C
Sbjct: 7 GCGGCGEDVVG--DGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGC 60
Score = 29.7 bits (67), Expect = 0.13
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 15/74 (20%)
Query: 104 TCSNCSTSLAG-QRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWH 162
C C + G D+ F CF C +C+ + G F + E R +
Sbjct: 7 GCGGCGEDVVGDGAGVVALDRVFHVGCF------VCSTCRAQL---RGQHFYAVERRAYC 57
Query: 163 NDCFM-----CASC 171
C++ S
Sbjct: 58 EGCYVATLESGPSS 71
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 61.5 bits (150), Expect = 2e-13
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 84 QIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
+ I V + WH E F C+ C G R R+ +C + +LF
Sbjct: 13 RPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG 64
Score = 55.8 bits (135), Expect = 3e-11
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C +C++PI G R ++ + WH + F+CA C+ +G C
Sbjct: 1 GSMGVPICGACRRPIEG----RVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCE 56
Query: 191 DC 192
Sbjct: 57 TH 58
Score = 52.7 bits (127), Expect = 5e-10
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFAT 46
+QWH + F C C+ P R+ YC Y + F
Sbjct: 25 KQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65
Score = 30.7 bits (70), Expect = 0.041
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 10/63 (15%)
Query: 104 TCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHN 163
C C + G R + K + + F C C+KP G R + +
Sbjct: 7 ICGACRRPIEG-RVVNAMGKQWHVEHF------VCAKCEKPF---LGHRHYERKGLAYCE 56
Query: 164 DCF 166
+
Sbjct: 57 THY 59
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 60.1 bits (146), Expect = 8e-13
Identities = 17/101 (16%), Positives = 25/101 (24%), Gaps = 29/101 (28%)
Query: 36 CANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKN 95
+ C +C F + V
Sbjct: 2 SEFMANALASATCERCKGGFAPAEKI-----------------------------VNSNG 32
Query: 96 EPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAK 136
E +H +CF C+ C F E + +C F LFA
Sbjct: 33 ELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAP 73
Score = 52.0 bits (125), Expect = 1e-09
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 2/67 (2%)
Query: 126 CADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGE 185
L + C CK + ++ +H CF+CA C F
Sbjct: 2 SEFMANALASATCERCKGGFAPAE--KIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEG 59
Query: 186 DIICPDC 192
C
Sbjct: 60 RKYCEHD 66
Score = 50.9 bits (122), Expect = 3e-09
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFA 45
+ +HE+CF C C F E YC + ++ FA
Sbjct: 28 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 59.7 bits (145), Expect = 2e-12
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 84 QIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFT-SREDKPFCADCFGELFAKRCYS 140
Q I + + +H CFTC C L G FT + C + F FA S
Sbjct: 23 QPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80
Score = 52.4 bits (126), Expect = 8e-10
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 6 RQWHEKCFACVVCKTPIGTKSF-IPREQEIYCANCYEEKFATRC 48
+ +H CF CVVC + F + +I+C + KFA+
Sbjct: 35 KAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGP 78
Score = 48.9 bits (117), Expect = 2e-08
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 126 CADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGE 185
+ ++C +C +PI R + + +H CF C C L G F D
Sbjct: 6 SGEGCYVATLEKCATCSQPILD----RILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDAT 61
Query: 186 DII-CPDC 192
I C +
Sbjct: 62 SQIHCIED 69
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK,
IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 58.9 bits (143), Expect = 2e-12
Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 29/97 (29%)
Query: 39 CYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPW 98
++ + C +C F + V E +
Sbjct: 5 YFQGSASATCERCKGGFAPAEK-----------------------------IVNSNGELY 35
Query: 99 HRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
H +CF C+ C F E + +C F LFA
Sbjct: 36 HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
Score = 50.9 bits (122), Expect = 2e-09
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFA 45
+ +HE+CF C C F E YC + ++ FA
Sbjct: 28 VNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72
Score = 48.9 bits (117), Expect = 1e-08
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 129 CFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDII 188
F + C CK + ++ +H CF+CA C F
Sbjct: 5 YFQGSASATCERCKGGFAPAE--KIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKY 62
Query: 189 CPDC 192
C
Sbjct: 63 CEHD 66
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 57.4 bits (139), Expect = 7e-12
Identities = 15/55 (27%), Positives = 18/55 (32%)
Query: 84 QIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRC 138
+ I + N WH ECF C C LA F + C C A
Sbjct: 13 EFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP 67
Score = 54.0 bits (130), Expect = 2e-10
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
++ WH +CF C +C+ + F+ C C+ + A+
Sbjct: 20 IKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGP 67
Score = 52.0 bits (125), Expect = 9e-10
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICP 190
G + C+ C + I G R I + WH +CF C CQ L GF+ + +C
Sbjct: 1 GSSGSSGCHQCGEFIIG----RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCR 56
Query: 191 DC 192
C
Sbjct: 57 PC 58
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 57.5 bits (139), Expect = 1e-11
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 129 CFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFIT-DGEDI 187
+ L+ RC+SC + I G +S + +H DCF+CA C+ +T +G++
Sbjct: 9 DYQRLYGTRCFSCDQFIEG----EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKEC 64
Query: 188 ICPDCAK 194
+C C+
Sbjct: 65 MCQKCSL 71
Score = 50.9 bits (122), Expect = 3e-09
Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 32/104 (30%)
Query: 35 YCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYK 94
Y+ + TRC C+ Q I V+
Sbjct: 5 SSGLDYQRLYGTRCFSCD-------------------------------QFIEGEVVSAL 33
Query: 95 NEPWHRECFTCSNCSTSLA-GQRFTSREDKPFCADCFGELFAKR 137
+ +H +CF C+ C G R T + C C +
Sbjct: 34 GKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSG 77
Score = 40.2 bits (94), Expect = 3e-05
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKS-FIPREQEIYCANCYEEKFATR 47
+ + +H CF C VC+ P +E C C +
Sbjct: 30 VSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSVSG 77
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 57.4 bits (139), Expect = 1e-11
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSC 141
V +HR CF C C +L + + +C C+G+ + + Y
Sbjct: 23 VQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGY 73
Score = 51.6 bits (124), Expect = 2e-09
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTF 55
R +H CF C+VC+ + + + + E+YC +CY +K+ + +
Sbjct: 28 RSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77
Score = 38.5 bits (90), Expect = 9e-05
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 135 AKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDC 192
+C +C + + + + R +H CF+C C+ +L ++ C C
Sbjct: 7 GNKCGACGRTVYH---AEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSC 61
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM
domain protein CLP-36, contractIle protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 55.9 bits (135), Expect = 3e-11
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 134 FAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCA 193
C C I G F+ DRH H +C++C C ++L +G + I C A
Sbjct: 14 KLPMCDKCGTGIVG----VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHA 69
Query: 194 KAKL 197
+ ++
Sbjct: 70 RERV 73
Score = 52.8 bits (127), Expect = 5e-10
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 84 QIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRC 138
I V ++ H EC+ C++C T+L + ED+ +C E +
Sbjct: 23 TGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77
Score = 51.3 bits (123), Expect = 2e-09
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
R H +C+ C C T + K E +IYC E+ +
Sbjct: 35 RHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPS 77
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 55.6 bits (134), Expect = 7e-11
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 84 QIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRC 138
I V +++ H ECF C++C+ +L + + E + +C +
Sbjct: 33 SGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87
Score = 52.5 bits (126), Expect = 8e-10
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
+ H +CF C C + K + E E+YC + +
Sbjct: 45 KYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPS 87
Score = 52.5 bits (126), Expect = 9e-10
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 137 RCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDCAKAK 196
C C I G + D++ H +CF+CA C +L +G+ ++ C A+A+
Sbjct: 27 LCDKCGSGIVG----AVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARAR 82
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 53.9 bits (130), Expect = 2e-10
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFC-ADCFGELFAKRCYSC 141
VT + WHR C C C +L E KP+C C+ +F + +
Sbjct: 16 VTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGR 67
Score = 45.4 bits (108), Expect = 3e-07
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCAN-CYEEKFATRCVKC 51
+ WH C C C + + E + YC + CY F +
Sbjct: 21 KDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGR 67
Score = 36.9 bits (86), Expect = 4e-04
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 137 RCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIIC 189
+C C K + ++ + WH C C C +L G C
Sbjct: 2 KCPKCDKEVYF---AERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYC 51
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 53.7 bits (129), Expect = 2e-10
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 134 FAKRCYSCKKPITGIGGTRFISFEDRHWH--NDCFMCASCQSSLVGRGFITDGEDIIC-P 190
A C C I + +++ + WH +CF+C+ C L+G+ F+ + C
Sbjct: 1 HAVVCQGCHNAIDP--EVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSV 58
Query: 191 DCAK 194
+C K
Sbjct: 59 ECKK 62
Score = 45.6 bits (108), Expect = 2e-07
Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 86 ITSGGVTYKNEPWH--RECFTCSNCSTSLAGQRFTSREDKPFC 126
VTY N WH ECF CS CS L GQ+F E FC
Sbjct: 14 PEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
Score = 39.1 bits (91), Expect = 4e-05
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 1 MEYKTRQWH--EKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFA 45
+ Y WH +CF C C + + F+P E ++C+ +++ +
Sbjct: 19 VTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRMS 65
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 53.6 bits (129), Expect = 3e-10
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCA-DCFGELFAKRCYS 140
V+ + WH+ C C CS +L + KPFC C+ LF S
Sbjct: 25 VSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75
Score = 43.9 bits (104), Expect = 1e-06
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCAN-CYEEKFATRC 48
+ WH+ C C C + + + +C CY F +
Sbjct: 30 KDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGP 73
Score = 36.6 bits (85), Expect = 4e-04
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 135 AKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIIC 189
A +C C K + +S + WH C C C +L G C
Sbjct: 9 ASKCPKCDKTVYF---AEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFC 60
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein; NMR
{Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 54.3 bits (130), Expect = 3e-10
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 95 NEPWHRECFTCSNCSTSLA--GQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTR 152
++ WH +C +C C L G+R + + C + L + + G
Sbjct: 23 DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDVMVVGEP 82
Query: 153 FISFEDRHWHNDCFMCASCQSSLVGRGFITD 183
+ + ++ + + I D
Sbjct: 83 TLMGGEFGDEDERLITRLENTQFDAANGIDD 113
Score = 42.7 bits (100), Expect = 7e-06
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 6 RQWHEKCFACVVCKTPIGT--KSFIPREQEIYCANCYEEKFATRCVKCNKTFF 56
+ WHE C +C +C +G + + C Y + +
Sbjct: 24 QYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSGGDV 76
Score = 35.4 bits (81), Expect = 0.003
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 137 RCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSL--VGRGFITDGEDIICPDC 192
C C++ I F+ D++WH DC C C L VGR +C
Sbjct: 5 TCGGCQQNIGD---RYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 59
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 53.2 bits (128), Expect = 4e-10
Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 33/108 (30%)
Query: 33 EIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVT 92
Y KF C C+ ++T +
Sbjct: 3 SGSSGKDYWGKFGEFCHGCS-------------------------------LLMTGPFMV 31
Query: 93 YKNEPWHRECFTCSNCSTSLA-GQRFTSRED-KPFCADCFGELFAKRC 138
+H ECF C +C + G + + +C C E+ +
Sbjct: 32 AGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPS 79
Score = 51.3 bits (123), Expect = 2e-09
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 122 DKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLV--GRG 179
+ F + C+ C +TG F+ + +H +CF C SC+ +
Sbjct: 2 SSGSSGKDYWGKFGEFCHGCSLLMTG----PFMVAGEFKYHPECFACMSCKVIIEDGDAY 57
Query: 180 FITDGEDIICPDC 192
+ + C C
Sbjct: 58 ALVQHATLYCGKC 70
Score = 43.2 bits (102), Expect = 2e-06
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 1 MEYKTRQWHEKCFACVVCKTPI--GTKSFIPREQEIYCANCYEEKFATRC 48
M ++H +CFAC+ CK I G + + +YC C+ E +
Sbjct: 30 MVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPS 79
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 51.3 bits (123), Expect = 2e-09
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 84 QIITSGGVTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140
II + +KN+P+H + F C+NC L + + +C C ++ S
Sbjct: 23 AIIDEQPLIFKNDPYHPDHFNCANCGKELTADARE-LKGELYCLPCHDKMGVSGPSS 78
Score = 44.4 bits (105), Expect = 8e-07
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 138 CYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDC 192
C C I + + F++ +H D F CA+C L GE + C C
Sbjct: 18 CQKCHAIIDE----QPLIFKNDPYHPDHFNCANCGKELTADARELKGE-LYCLPC 67
Score = 39.4 bits (92), Expect = 4e-05
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
+ +K +H F C C + + + E+YC C+++ +
Sbjct: 30 LIFKNDPYHPDHFNCANCGKELTADARE-LKGELYCLPCHDKMGVSGP 76
Score = 26.7 bits (59), Expect = 1.7
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 7/45 (15%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIG 149
C C + Q + + P+ D F C +C K +T
Sbjct: 18 CQKCHAIIDEQPLIFK-NDPYHPDHF------NCANCGKELTADA 55
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 51.8 bits (124), Expect = 2e-09
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITG 147
+ + +H CF CS C+ L+ + S + +C F +LF + + +G
Sbjct: 31 LLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSG 87
Score = 46.8 bits (111), Expect = 1e-07
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKC 51
+ +H CF C C + ++ IYC + + F ++
Sbjct: 36 QVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYD 81
Score = 34.8 bits (80), Expect = 0.003
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 135 AKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGEDIICPDC 192
+ C C+K + + + +H CF C+ C + L + + I C
Sbjct: 15 RETCVECQKTVYP---MERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPH 69
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 49.4 bits (118), Expect = 1e-08
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 6 RQWHEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRC 48
+QWH CF C C + T +I ++ YC + Y +F +
Sbjct: 36 KQWHVSCFKCQTCSVIL-TGEYISKDGVPYCESDYHAQFGSGP 77
Score = 47.4 bits (113), Expect = 5e-08
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 95 NEPWHRECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYS 140
++ WH CF C CS L G + S++ P+C + F S
Sbjct: 35 DKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79
Score = 42.4 bits (100), Expect = 4e-06
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 127 ADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGE 185
C CK+ I + + D+ WH CF C +C L G DG
Sbjct: 7 GKPIKIRGPSHCAGCKEEIKH---GQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGV 62
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 47.7 bits (113), Expect = 1e-07
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 95 NEPWHRECFTCSNCSTSLA--GQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIG--- 149
+ WH C CS+C L G ++ C + + LF G G
Sbjct: 25 DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84
Query: 150 ---GTRFISFEDRHWHNDCFMCASCQSSLVGRGFITD 183
G + + ++ + + I D
Sbjct: 85 MVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDD 121
Score = 45.4 bits (107), Expect = 9e-07
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 6 RQWHEKCFACVVCKTPIG--TKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLRE 60
WH +C C C+ +G S + I C N Y F +
Sbjct: 26 SYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82
Score = 38.4 bits (89), Expect = 2e-04
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGF 180
G L KRC C I + D +WH+ C C+SCQ+ L G
Sbjct: 1 GSLSWKRCAGCGGKIAD---RFLLYAMDSYWHSRCLKCSSCQAQLGDIGT 47
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 43.6 bits (102), Expect = 1e-06
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSL-VGRGFITDGEDIIC 189
G + C SC+K ITG R + ++H+H C +C C G G I
Sbjct: 1 GSSGSSGCDSCEKYITG----RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWH 56
Query: 190 PDCAKAK 196
P C +A
Sbjct: 57 PACRQAA 63
Score = 31.2 bits (70), Expect = 0.034
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 84 QIITSGGVTYKNEPWHRECFTCSNCSTSLA-GQRFTSREDKPFCADCF 130
+ IT + + +H C C C A G+ + + C
Sbjct: 13 KYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACR 60
Score = 30.1 bits (67), Expect = 0.11
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGTKS-FIPREQEIYCANCYEEK 43
+E + +H C CV C + I+ C +
Sbjct: 20 LEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63
Score = 24.7 bits (53), Expect = 7.7
Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 9/67 (13%)
Query: 104 TCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHN 163
C +C + G R +K + C C C + G WH
Sbjct: 7 GCDSCEKYITG-RVLEAGEKHYHPSCA------LCVRCGQMFAE--GEEMYLQGSSIWHP 57
Query: 164 DCFMCAS 170
C A
Sbjct: 58 ACRQAAR 64
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 44.3 bits (104), Expect = 2e-06
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 6 RQWHEKCFACVVCKTPIG--TKSFIPREQEIYCANCYEEKFA 45
WH +C C C+ +G S + I C N Y F
Sbjct: 82 SYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123
Score = 44.0 bits (103), Expect = 3e-06
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 3/78 (3%)
Query: 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPITGIGGTRFISFEDRHWH 162
+ G + G L KRC C I + D +WH
Sbjct: 29 KMDVTVIDTKDGSQSKLGGGGSGGHMGSGGLSWKRCAGCGGKIAD---RFLLYAMDSYWH 85
Query: 163 NDCFMCASCQSSLVGRGF 180
+ C C+SCQ+ L G
Sbjct: 86 SRCLKCSSCQAQLGDIGT 103
Score = 43.2 bits (101), Expect = 5e-06
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 95 NEPWHRECFTCSNCSTSLAGQRFT--SREDKPFCADCFGELFA 135
+ WH C CS+C L + ++ C + + LF
Sbjct: 81 DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 42.7 bits (100), Expect = 7e-06
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 1 MEYKTRQWHEKCFACVVCKTPIGT-KSFIPREQEIYCANCYEEKFATRCVKCNKTFFR 57
M K + +H +CF C C+ ++ +I C E
Sbjct: 25 MRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSG 82
Score = 42.0 bits (98), Expect = 1e-05
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 91 VTYKNEPWHRECFTCSNCSTSLA-GQRFTSREDKPFCADCFGELFAKRCYSCKKPITG 147
+ K++ +H ECF C+ C + G R+ C E S +G
Sbjct: 25 MRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSG 82
Score = 38.1 bits (88), Expect = 3e-04
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 136 KRCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSL-VGRGFITDGEDIICPDC 192
C SC K I + +D+ +H +CF CA+CQ VG ++ DI+C
Sbjct: 9 GLCASCDKRIRA--YEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQD 64
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 34.5 bits (79), Expect = 0.003
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 97 PWHRECFTCSNCSTSLA--GQRFTSREDKPFCADCFGELFAK 136
+HR CF C C +L G + +C + +
Sbjct: 37 FFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSG 78
Score = 33.4 bits (76), Expect = 0.009
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 137 RCYSCKKPITGIGGTRFISFEDRHWHNDCFMCASCQSSLVGRGFITDGED 186
C C + + + +H CF C +C+++L G+ D
Sbjct: 17 LCALCGEHLYV---LERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGD 63
Score = 31.5 bits (71), Expect = 0.040
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 6 RQWHEKCFACVVCKTPI--GTKSFIPREQEIYCANCYEE 42
+H CF C C+ + G P + YC +
Sbjct: 36 HFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQ 74
>3exv_A Fiber protein, PIV; fiber KNOB, attachment protein, trimer, CD46,
MCP, viral protein; 1.45A {Human adenovirus B} PDB:
3o8e_A* 3exw_A 2o39_A* 3f0y_A
Length = 213
Score = 27.4 bits (60), Expect = 2.7
Identities = 5/44 (11%), Positives = 9/44 (20%)
Query: 63 TFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCS 106
+ Y I + + + V FT
Sbjct: 164 MLNRRAINDETSYCIRITWSWNTGDAPEVQTSATTLVTSPFTFY 207
>3mhs_C SAGA-associated factor 11; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3m99_B 3mhh_C 2lo2_A 3kjl_E 3kik_E
Length = 99
Score = 25.8 bits (56), Expect = 5.1
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 97 PWHRECFTCSNCSTSLAGQRF 117
+ C NC ++ R
Sbjct: 65 QESSQYIHCENCGRDVSANRL 85
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.2 bits (57), Expect = 6.7
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 4/32 (12%)
Query: 163 NDCFMCASCQSSLVGRGFITDGE--DIICPDC 192
N C C+ + D++C C
Sbjct: 19 NIVLTCPECKV--YPPKIVERFSEGDVVCALC 48
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats,
LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus}
PDB: 2xq2_B 2kpe_A
Length = 593
Score = 26.3 bits (58), Expect = 7.3
Identities = 3/26 (11%), Positives = 12/26 (46%)
Query: 68 SGRINKVYSILFYFLFQIITSGGVTY 93
+ ++ + ++ + L+ + V Y
Sbjct: 123 NKKLKTILAVFWISLYIFVNLTSVLY 148
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
transport, SGLT, ION TRAN membrane, sodium transport,
symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Length = 530
Score = 26.2 bits (58), Expect = 8.0
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 55 FFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTY 93
F R F + ++ + ++ + L+ + V Y
Sbjct: 88 FVEKR----F---NKKLKTILAVFWISLYIFVNLTSVLY 119
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 24.8 bits (54), Expect = 9.2
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 125 FCADCFGELFAK--RCYSCKKPITGI 148
FC C E F RCY C +P GI
Sbjct: 37 FCESCALEHFRATPRCYICDQPTGGI 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.482
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,081,413
Number of extensions: 174483
Number of successful extensions: 1132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 967
Number of HSP's successfully gapped: 236
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.4 bits)