RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8131
(198 letters)
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 54.1 bits (130), Expect = 2e-11
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 138 CYSCKKPITGIGGTRFISFEDRHWHNDCF 166
C C PI+G+GGT++ISFE+R WHNDCF
Sbjct: 1 CAGCTNPISGLGGTKYISFEERQWHNDCF 29
Score = 23.3 bits (50), Expect = 3.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 102 CFTCSNCSTSLAGQRFTSREDKPFCADCF 130
C C+N + L G ++ S E++ + DCF
Sbjct: 1 CAGCTNPISGLGGTKYISFEERQWHNDCF 29
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5,
FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 54.1 bits (130), Expect = 2e-11
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 138 CYSCKKPITGIGGTRFISFEDRHWHNDCF 166
C +C KPI+G+ G +FI F+D WH++CF
Sbjct: 1 CVACSKPISGLTGAKFICFQDSQWHSECF 29
Score = 24.5 bits (53), Expect = 1.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 102 CFTCSNCSTSLAGQRFTSREDKPFCADCF 130
C CS + L G +F +D + ++CF
Sbjct: 1 CVACSKPISGLTGAKFICFQDSQWHSECF 29
>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 52.1 bits (125), Expect = 1e-10
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
C+ C T LAGQ+FTSR++ P+C CFGELFA
Sbjct: 2 CTGCQTPLAGQQFTSRDEDPYCVACFGELFA 32
Score = 29.0 bits (65), Expect = 0.035
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 15 CVVCKTPIGTKSFIPREQEIYCANCYEEKFA 45
C C+TP+ + F R+++ YC C+ E FA
Sbjct: 2 CTGCQTPLAGQQFTSRDEDPYCVACFGELFA 32
Score = 22.8 bits (49), Expect = 5.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 167 MCASCQSSLVGRGFITDGEDIICPDC 192
+C CQ+ L G+ F + ED C C
Sbjct: 1 VCTGCQTPLAGQQFTSRDEDPYCVAC 26
>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 51.7 bits (124), Expect = 2e-10
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 15 CVVCKTPIGTKSFIPREQEIYCANCYEEKFA 45
C C+ PIGTKSFIP++ + +C CYE++ A
Sbjct: 2 CHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA 32
Score = 24.4 bits (53), Expect = 1.7
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
C C + + F ++++ FC C+ + A
Sbjct: 2 CHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA 32
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 50.2 bits (120), Expect = 7e-10
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 15 CVVCKTPIGTKSFIPREQEIYCANCYEEKFA 45
C C+ P+G++SF+P + YC CYE KFA
Sbjct: 2 CSGCEQPLGSRSFVPDKGAHYCVPCYENKFA 32
Score = 23.6 bits (51), Expect = 2.7
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
CS C L + F + +C C+ FA
Sbjct: 2 CSGCEQPLGSRSFVPDKGAHYCVPCYENKFA 32
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 49.3 bits (118), Expect = 1e-09
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
C+ C L+GQRFT+R+D +C +CF +L+A
Sbjct: 2 CTACRKQLSGQRFTARDDFAYCLNCFCDLYA 32
Score = 32.0 bits (73), Expect = 0.003
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 15 CVVCKTPIGTKSFIPREQEIYCANCYEEKFA 45
C C+ + + F R+ YC NC+ + +A
Sbjct: 2 CTACRKQLSGQRFTARDDFAYCLNCFCDLYA 32
>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 49.0 bits (117), Expect = 2e-09
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 31/65 (47%)
Query: 39 CYEEKFATRCVKCNKTFFRLREKGTFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPW 98
CYE KFA RC +C+K +T GGVTY+++PW
Sbjct: 2 CYENKFAPRCARCSK-------------------------------TLTQGGVTYRDQPW 30
Query: 99 HRECF 103
HREC
Sbjct: 31 HRECL 35
Score = 37.4 bits (87), Expect = 3e-05
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 129 CFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCF 166
C+ FA RC C K +T G +++ D+ WH +C
Sbjct: 2 CYENKFAPRCARCSKTLTQGG----VTYRDQPWHRECL 35
>d2cura2 g.39.1.3 (A:8-32) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 41.4 bits (97), Expect = 1e-06
Identities = 12/20 (60%), Positives = 18/20 (90%)
Query: 84 QIITSGGVTYKNEPWHRECF 103
+ ITSGG+TY+++PWH +CF
Sbjct: 6 KAITSGGITYQDQPWHADCF 25
Score = 26.4 bits (58), Expect = 0.26
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 138 CYSCKKPITGIGGTRFISFEDRHWHNDCF 166
C C K IT G I+++D+ WH DCF
Sbjct: 1 CVKCNKAITSGG----ITYQDQPWHADCF 25
>d2d8za1 g.39.1.3 (A:8-32) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 40.3 bits (94), Expect = 3e-06
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 84 QIITSGGVTYKNEPWHRECF 103
+ IT+GGVTY+ +PWH+ECF
Sbjct: 6 KPITTGGVTYREQPWHKECF 25
Score = 27.6 bits (61), Expect = 0.094
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 138 CYSCKKPITGIGGTRFISFEDRHWHNDCF 166
C CKKPIT G +++ ++ WH +CF
Sbjct: 1 CVQCKKPITTGG----VTYREQPWHKECF 25
>d1x4la2 g.39.1.3 (A:37-66) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 38.4 bits (89), Expect = 1e-05
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 168 CASCQSSLVGRGFITDGEDIICPDCAK 194
C C SLVGRGF+T+ +DI+CPDC K
Sbjct: 2 CKKCSLSLVGRGFLTERDDILCPDCGK 28
Score = 25.7 bits (56), Expect = 0.48
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADC 129
C CS SL G+ F + D C DC
Sbjct: 2 CKKCSLSLVGRGFLTERDDILCPDC 26
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 37.8 bits (88), Expect = 3e-05
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 129 CFGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCF 166
C + +C C K I G + + ++ WH DCF
Sbjct: 2 CTTREDSPKCKGCFKAIVA--GDQNVEYKGTVWHKDCF 37
Score = 25.5 bits (56), Expect = 0.70
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 1 MEYKTRQWHEKCF 13
+EYK WH+ CF
Sbjct: 25 VEYKGTVWHKDCF 37
Score = 24.4 bits (53), Expect = 1.9
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 39 CYEEKFATRCVKCNKTF 55
C + + +C C K
Sbjct: 2 CTTREDSPKCKGCFKAI 18
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 35.8 bits (83), Expect = 1e-04
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 130 FGELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDCF 166
F +F+ +C C +P+ ++S D WH +CF
Sbjct: 3 FLAMFSPKCGGCNRPVLE----NYLSAMDTVWHPECF 35
>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 35.7 bits (82), Expect = 1e-04
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADCF 130
C CS LAGQRFT+ ED+ +C DC+
Sbjct: 2 CVTCSKKLAGQRFTAVEDQYYCVDCY 27
Score = 26.4 bits (58), Expect = 0.27
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 15 CVVCKTPIGTKSFIPREQEIYCANCYEE 42
CV C + + F E + YC +CY+
Sbjct: 2 CVTCSKKLAGQRFTAVEDQYYCVDCYKN 29
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 34.3 bits (79), Expect = 4e-04
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 13 FACVVCKTPIGTKSFIPREQEIYCANCYEEKFA 45
F C C F E YC + ++ FA
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 33
Score = 33.5 bits (77), Expect = 8e-04
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
F C+ C F E + +C F LFA
Sbjct: 1 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 33
>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5,
FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 34
Score = 34.5 bits (79), Expect = 5e-04
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 168 CASCQSSLVGRGFITDGEDIICPDC 192
C C SLVG+GF+T ++I C C
Sbjct: 2 CGKCSVSLVGKGFLTQNKEIFCQKC 26
Score = 27.2 bits (60), Expect = 0.17
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADC 129
C CS SL G+ F ++ + FC C
Sbjct: 2 CGKCSVSLVGKGFLTQNKEIFCQKC 26
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 33.5 bits (76), Expect = 8e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 15 CVVCKTPIGTKSFIPREQEIYCANCYEEKFA 45
C CK IGT SF P+ ++ YC C+E KFA
Sbjct: 2 CSNCKQVIGTGSFFPKGEDFYCVTCHETKFA 32
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 33.6 bits (77), Expect = 0.001
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 137 RCYSCKKPITGIGGTRFISFEDRHWHNDCF 166
C C + I G F+ + WH + F
Sbjct: 20 MCAHCNQVIRG----PFLVALGKSWHPEEF 45
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 30.5 bits (69), Expect = 0.017
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSC 141
C+ C SL ++ + +C C+ + F + +
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGF 38
Score = 29.7 bits (67), Expect = 0.030
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 15 CVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKC 51
C C + + + ++ EIYC CY + F +
Sbjct: 2 CAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGF 38
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 28.6 bits (64), Expect = 0.048
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 15 CVVCKTPIGTKSFIPREQEIYCANCYEEKFA 45
C CK + F+ + +YC CYE+ FA
Sbjct: 2 CAHCKNTMAYIGFVEEKGALYCELCYEKFFA 32
Score = 26.7 bits (59), Expect = 0.21
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADCFGELFA 135
C++C ++A F + +C C+ + FA
Sbjct: 2 CAHCKNTMAYIGFVEEKGALYCELCYEKFFA 32
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 28.9 bits (65), Expect = 0.054
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADCFGELFAKR 137
CS C+ L+ + S + +C F +LF +
Sbjct: 2 CSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 34
Score = 23.5 bits (51), Expect = 4.1
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 15 CVVCKTPIGTKSFIPREQEIYCANCYEEKFATR 47
C C + ++ IYC + + F ++
Sbjct: 2 CSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSK 34
>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 65
Score = 29.0 bits (65), Expect = 0.063
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADCFGELF 134
C C +L D+ +C C+G+ +
Sbjct: 2 CMVCKKNLDSTTVAVHGDEIYCKSCYGKKY 31
Score = 28.7 bits (64), Expect = 0.083
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 15 CVVCKTPIGTKSFIPREQEIYCANCYEEKF 44
C+VCK + + + EIYC +CY +K+
Sbjct: 2 CMVCKKNLDSTTVAVHGDEIYCKSCYGKKY 31
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 27.8 bits (62), Expect = 0.092
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 131 GELFAKRCYSCKKPITGIGGTRFISFEDRHWH 162
G + C +C++PI G R ++ + WH
Sbjct: 1 GSMGVPICGACRRPIEG----RVVNAMGKQWH 28
>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 27
Score = 27.2 bits (60), Expect = 0.15
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 138 CYSCKKPITGIGGTRFISFEDRHWHNDCF 166
C C+KPI ++ + +++R WH+ CF
Sbjct: 1 CVECRKPIGA--DSKEVHYKNRFWHDTCF 27
>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 32
Score = 26.8 bits (59), Expect = 0.20
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 15 CVVCKTPIGTKSFIPREQEIYCANCYEEKF 44
C+VC+ + + + + E+YC +CY +K+
Sbjct: 2 CMVCRKNLDSTTVAIHDAEVYCKSCYGKKY 31
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 26.4 bits (58), Expect = 0.33
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADCF 130
CS C L GQ F + E + +C C+
Sbjct: 2 CSTCRAQLRGQHFYAVERRAYCEGCY 27
Score = 22.5 bits (48), Expect = 8.4
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 15 CVVCKTPIGTKSFIPREQEIYCANCY 40
C C+ + + F E+ YC CY
Sbjct: 2 CSTCRAQLRGQHFYAVERRAYCEGCY 27
>d2o39a1 b.21.1.1 (A:129-325) Adenovirus fiber protein "knob" domain
{Human adenovirus type 11P [TaxId: 343462]}
Length = 197
Score = 27.9 bits (62), Expect = 0.54
Identities = 5/44 (11%), Positives = 9/44 (20%)
Query: 63 TFQSHSGRINKVYSILFYFLFQIITSGGVTYKNEPWHRECFTCS 106
+ Y I + + + V FT
Sbjct: 148 MLNRRAINDETSYCIRITWSWNTGDAPEVQTSATTLVTSPFTFY 191
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein
6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 24.7 bits (54), Expect = 1.1
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 15 CVVCKTPIGTKSF-IPREQEIYCANCYEEKFA 45
CVVC + F + +I+C + KFA
Sbjct: 2 CVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 33
Score = 24.7 bits (54), Expect = 1.4
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 104 TCSNCSTSLAGQRFT-SREDKPFCADCFGELFA 135
TC C L G FT + C + F FA
Sbjct: 1 TCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 33
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 27
Score = 24.5 bits (53), Expect = 1.2
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 138 CYSCKKPITGIGGTRFISFEDRHWHNDCF 166
C CKK I + GTR + ++ WH CF
Sbjct: 1 CQECKKTI--MPGTRKMEYKGSSWHETCF 27
Score = 23.4 bits (50), Expect = 3.9
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 1 MEYKTRQWHEKCF 13
MEYK WHE CF
Sbjct: 15 MEYKGSSWHETCF 27
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 25.9 bits (56), Expect = 1.7
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 100 RECFTCSNCSTSLAGQRFTSREDKPFCADCFGELFAKRCYSCKKPIT 146
+ CS C+ L + FC++C + C C P
Sbjct: 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 24.0 bits (52), Expect = 3.0
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 132 ELFAKRCYSCKKPITGIGGTRFISFEDRHWHNDC 165
L+ RC+SC + I G +S + +H DC
Sbjct: 12 RLYGTRCFSCDQFIEG----EVVSALGKTYHPDC 41
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 30
Score = 23.5 bits (51), Expect = 3.5
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 136 KRCYSCKKPITGIGGTRFISF-EDRHWHNDC 165
KRC C I RF+ + D +WH+ C
Sbjct: 3 KRCAGCGGKIA----DRFLLYAMDSYWHSRC 29
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit
VIc {Cow (Bos taurus) [TaxId: 9913]}
Length = 73
Score = 24.3 bits (53), Expect = 3.7
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 52 NKTFFRLREKGTFQS 66
K F +R+ G FQS
Sbjct: 57 MKDFEEMRKAGIFQS 71
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 30
Score = 23.2 bits (50), Expect = 3.9
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 138 CYSCKKPITGIGGTRFI-SFEDRHWHNDC 165
C C++ I R+ D++WH DC
Sbjct: 6 CGGCQQNIG----DRYFLKAIDQYWHEDC 30
>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 27
Score = 23.0 bits (49), Expect = 4.3
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 1 MEYKTRQWHEKCF 13
+EY + WHE CF
Sbjct: 15 LEYGGQTWHEHCF 27
Score = 23.0 bits (49), Expect = 4.8
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 138 CYSCKKPITGIGGTRFISFEDRHWHNDCF 166
C +C + + + G+R + + + WH CF
Sbjct: 1 CSACGETV--MPGSRKLEYGGQTWHEHCF 27
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 22.9 bits (49), Expect = 5.2
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 103 FTCSNCSTSLAGQRFTSREDKPFCADCFGELF 134
F C+ C G R R+ +C + +LF
Sbjct: 1 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 32
>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP,
CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 22.8 bits (49), Expect = 5.3
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 105 CSNCSTSLAGQRFTSREDKPFC-ADCFGELF 134
C CS +L + KPFC C+ LF
Sbjct: 2 CERCSKTLTPGGHAEHDGKPFCHKPCYATLF 32
>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP,
CRIP {Rat (Rattus rattus) [TaxId: 10117]}
Length = 48
Score = 23.2 bits (50), Expect = 5.6
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCA-DCFGELF 134
C C +L E KP+C C+ +F
Sbjct: 2 CEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF 32
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 25.1 bits (54), Expect = 5.8
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 53 KTFFRLREKGTFQSHSGRIN 72
K FRL G S+ G +
Sbjct: 21 KKLFRLNNFGLLNSNWGAVP 40
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 22.4 bits (48), Expect = 8.2
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 105 CSNCSTSLAGQRFTSREDKPFCADCFGEL 133
C +C TS + F + +PFC +
Sbjct: 2 CGDCFTSFSTGSFFELDGRPFCELHYHHR 30
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 24.1 bits (51), Expect = 8.2
Identities = 8/63 (12%), Positives = 16/63 (25%)
Query: 9 HEKCFACVVCKTPIGTKSFIPREQEIYCANCYEEKFATRCVKCNKTFFRLREKGTFQSHS 68
H C V P + ++ + + +F LR ++
Sbjct: 16 HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 75
Query: 69 GRI 71
G
Sbjct: 76 GNY 78
>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein,
CRP, CRIP {Japanese quail (Coturnix coturnix japonica),
CRP2 [TaxId: 93934]}
Length = 31
Score = 22.3 bits (47), Expect = 8.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 13 FACVVCKTPIGTKSFIPREQEIYCANCY 40
F C C + + + +E EIYC CY
Sbjct: 1 FRCAKCGKSLESTTLTEKEGEIYCKGCY 28
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal
domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 38
Score = 22.4 bits (48), Expect = 9.3
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 168 CASCQSSLVGRGFITDGEDIICPDCA 193
C C S DG ++CP+CA
Sbjct: 6 CPQCNSEYT----YEDGALLVCPECA 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.140 0.482
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 820,546
Number of extensions: 40238
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 130
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.3 bits)