Query psy8133
Match_columns 99
No_of_seqs 128 out of 1114
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 19:26:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4din_B CAMP-dependent protein 99.8 1.2E-17 4.1E-22 113.1 11.1 99 1-99 180-278 (381)
2 3shr_A CGMP-dependent protein 99.7 8.2E-18 2.8E-22 109.9 8.8 99 1-99 89-187 (299)
3 2qcs_B CAMP-dependent protein 99.7 5.6E-17 1.9E-21 105.4 12.2 99 1-99 89-187 (291)
4 3of1_A CAMP-dependent protein 99.7 4.4E-18 1.5E-22 107.9 6.2 99 1-99 57-155 (246)
5 3tnp_B CAMP-dependent protein 99.7 1.5E-16 5.1E-21 108.9 7.1 99 1-99 195-297 (416)
6 3ukn_A Novel protein similar t 99.5 7.1E-14 2.4E-18 87.4 8.7 74 1-74 125-200 (212)
7 3ocp_A PRKG1 protein; serine/t 99.5 4.5E-14 1.6E-18 82.8 7.2 66 1-66 73-138 (139)
8 3pna_A CAMP-dependent protein 99.5 1.1E-13 3.8E-18 82.6 7.3 66 1-66 88-153 (154)
9 4f8a_A Potassium voltage-gated 99.5 3.6E-13 1.2E-17 80.3 9.2 70 1-70 77-148 (160)
10 2ptm_A Hyperpolarization-activ 99.5 2.9E-13 9.7E-18 83.8 8.8 74 1-74 121-195 (198)
11 3mdp_A Cyclic nucleotide-bindi 99.5 2.7E-13 9.1E-18 79.4 8.2 73 1-73 56-136 (142)
12 3idb_B CAMP-dependent protein 99.4 2.1E-13 7.1E-18 81.8 5.6 69 1-69 88-160 (161)
13 3bpz_A Potassium/sodium hyperp 99.4 5.6E-13 1.9E-17 82.8 6.5 73 1-73 122-194 (202)
14 1vp6_A CNBD, cyclic-nucleotide 99.4 1.2E-12 4.1E-17 76.4 7.1 73 1-75 61-133 (138)
15 3gyd_A CNMP-BD protein, cyclic 99.4 1.1E-12 3.8E-17 80.7 7.1 71 1-71 89-164 (187)
16 2z69_A DNR protein; beta barre 99.4 2.2E-12 7.5E-17 76.3 7.5 77 1-77 62-144 (154)
17 2pqq_A Putative transcriptiona 99.4 2.7E-12 9.2E-17 75.5 7.1 71 1-71 55-130 (149)
18 3shr_A CGMP-dependent protein 99.4 1.6E-12 5.5E-17 84.8 6.5 74 1-74 207-286 (299)
19 3e97_A Transcriptional regulat 99.3 1.3E-11 4.5E-16 77.6 8.9 72 1-72 56-132 (231)
20 3of1_A CAMP-dependent protein 99.3 5.1E-12 1.7E-16 79.9 6.7 64 1-64 175-239 (246)
21 4din_B CAMP-dependent protein 99.3 5.5E-12 1.9E-16 85.3 7.2 72 1-72 298-375 (381)
22 4ava_A Lysine acetyltransferas 99.3 8E-12 2.7E-16 82.6 7.4 73 1-74 63-139 (333)
23 4ev0_A Transcription regulator 99.3 1.4E-11 4.8E-16 76.6 8.2 72 1-72 49-125 (216)
24 2oz6_A Virulence factor regula 99.3 1.9E-11 6.5E-16 75.6 8.5 71 1-71 40-119 (207)
25 3d0s_A Transcriptional regulat 99.3 1.1E-11 3.7E-16 77.8 7.0 70 1-70 56-130 (227)
26 2gau_A Transcriptional regulat 99.3 1.8E-11 6.1E-16 77.1 7.9 69 1-69 60-133 (232)
27 3ryp_A Catabolite gene activat 99.3 2.8E-11 9.5E-16 75.0 8.7 70 1-70 46-121 (210)
28 2qcs_B CAMP-dependent protein 99.3 1.3E-11 4.3E-16 80.1 7.4 70 1-70 207-282 (291)
29 3fx3_A Cyclic nucleotide-bindi 99.3 1.8E-11 6.1E-16 77.3 7.8 68 1-68 61-133 (237)
30 1zyb_A Transcription regulator 99.3 2.7E-11 9.2E-16 76.5 8.0 84 1-84 70-166 (232)
31 1o7f_A CAMP-dependent RAP1 gua 99.3 3.6E-11 1.2E-15 82.6 9.3 60 1-61 92-158 (469)
32 3dn7_A Cyclic nucleotide bindi 99.3 2.9E-11 9.9E-16 74.2 7.8 67 1-67 57-129 (194)
33 1o5l_A Transcriptional regulat 99.2 3.7E-11 1.3E-15 75.0 8.2 70 1-70 49-124 (213)
34 3kcc_A Catabolite gene activat 99.2 4.7E-11 1.6E-15 76.7 8.8 70 1-70 96-171 (260)
35 4f7z_A RAP guanine nucleotide 99.2 2.5E-11 8.4E-16 90.3 7.8 58 1-58 388-447 (999)
36 3iwz_A CAP-like, catabolite ac 99.2 9E-11 3.1E-15 73.6 9.0 70 1-70 61-141 (230)
37 4f7z_A RAP guanine nucleotide 99.2 1.4E-10 4.8E-15 86.3 10.9 59 1-60 92-157 (999)
38 3tnp_B CAMP-dependent protein 99.2 1.4E-11 4.7E-16 84.3 5.1 64 11-74 338-401 (416)
39 1o7f_A CAMP-dependent RAP1 gua 99.2 5E-11 1.7E-15 82.0 7.0 67 1-67 388-456 (469)
40 3dv8_A Transcriptional regulat 99.2 1.6E-10 5.3E-15 72.0 8.6 70 1-70 53-129 (220)
41 3dkw_A DNR protein; CRP-FNR, H 99.2 1.9E-11 6.5E-16 76.5 4.0 72 1-72 59-136 (227)
42 3la7_A Global nitrogen regulat 99.1 2.4E-10 8.2E-15 72.6 8.5 70 1-70 70-146 (243)
43 3e6c_C CPRK, cyclic nucleotide 99.1 6.2E-10 2.1E-14 70.9 8.9 67 1-70 59-130 (250)
44 2d93_A RAP guanine nucleotide 99.1 6.5E-11 2.2E-15 68.9 3.8 60 1-60 67-127 (134)
45 1wgp_A Probable cyclic nucleot 99.0 8E-11 2.7E-15 68.5 2.6 63 1-63 56-133 (137)
46 3b02_A Transcriptional regulat 99.0 5.6E-10 1.9E-14 68.7 5.7 52 1-53 26-82 (195)
47 2bgc_A PRFA; bacterial infecti 99.0 2.7E-09 9.3E-14 67.5 8.5 69 1-70 45-121 (238)
48 3beh_A MLL3241 protein; transm 99.0 5.2E-11 1.8E-15 79.8 0.0 72 1-74 278-349 (355)
49 2fmy_A COOA, carbon monoxide o 99.0 3.3E-09 1.1E-13 66.2 8.1 64 1-71 54-121 (220)
50 1ft9_A Carbon monoxide oxidati 98.9 1.1E-08 3.6E-13 64.0 8.2 61 1-68 50-114 (222)
51 3cf6_E RAP guanine nucleotide 98.8 4.1E-09 1.4E-13 76.3 5.9 63 1-63 83-147 (694)
52 2zcw_A TTHA1359, transcription 98.6 2.7E-08 9.3E-13 61.3 3.7 51 1-53 34-89 (202)
53 3idb_B CAMP-dependent protein 94.2 0.0041 1.4E-07 36.4 -1.4 52 48-99 17-68 (161)
54 3ocp_A PRKG1 protein; serine/t 93.4 0.12 4E-06 29.2 3.9 37 63-99 17-53 (139)
55 3pna_A CAMP-dependent protein 92.0 0.038 1.3E-06 32.0 0.5 38 62-99 31-68 (154)
56 4f8a_A Potassium voltage-gated 91.0 0.18 6.2E-06 28.9 2.8 37 63-99 21-57 (160)
57 2z69_A DNR protein; beta barre 90.0 0.28 9.4E-06 27.8 2.9 35 65-99 8-42 (154)
58 3gyd_A CNMP-BD protein, cyclic 89.5 0.35 1.2E-05 28.9 3.3 36 64-99 34-69 (187)
59 1vp6_A CNBD, cyclic-nucleotide 89.0 0.36 1.2E-05 26.9 2.9 33 67-99 9-41 (138)
60 2pqq_A Putative transcriptiona 88.9 0.22 7.6E-06 28.0 2.0 32 68-99 4-35 (149)
61 1wgp_A Probable cyclic nucleot 88.0 0.19 6.4E-06 28.1 1.2 31 69-99 6-36 (137)
62 2ptm_A Hyperpolarization-activ 87.4 0.51 1.8E-05 28.2 3.0 35 65-99 67-101 (198)
63 2d93_A RAP guanine nucleotide 86.6 0.52 1.8E-05 26.2 2.6 33 66-98 13-45 (134)
64 3e97_A Transcriptional regulat 84.6 0.56 1.9E-05 28.6 2.2 32 68-99 5-36 (231)
65 3dkw_A DNR protein; CRP-FNR, H 84.3 0.72 2.5E-05 27.9 2.6 33 67-99 7-39 (227)
66 3mdp_A Cyclic nucleotide-bindi 83.7 0.19 6.5E-06 28.1 -0.2 32 68-99 5-36 (142)
67 3dv8_A Transcriptional regulat 82.7 0.38 1.3E-05 29.1 0.8 31 69-99 3-33 (220)
68 3bpz_A Potassium/sodium hyperp 81.3 0.58 2E-05 28.1 1.3 35 65-99 68-102 (202)
69 4ava_A Lysine acetyltransferas 80.7 1.1 3.6E-05 29.1 2.5 32 68-99 12-43 (333)
70 3cf6_E RAP guanine nucleotide 78.9 0.95 3.3E-05 33.0 2.0 53 47-99 6-63 (694)
71 3d0s_A Transcriptional regulat 77.2 0.45 1.5E-05 29.0 -0.1 33 67-99 4-36 (227)
72 3dn7_A Cyclic nucleotide bindi 77.1 0.93 3.2E-05 26.8 1.3 32 68-99 6-37 (194)
73 1zyb_A Transcription regulator 77.0 2.2 7.4E-05 26.1 3.0 35 65-99 14-50 (232)
74 3fx3_A Cyclic nucleotide-bindi 76.7 0.54 1.8E-05 28.8 0.1 34 66-99 8-41 (237)
75 3iwz_A CAP-like, catabolite ac 75.6 1 3.6E-05 27.3 1.2 34 66-99 8-41 (230)
76 3ukn_A Novel protein similar t 60.5 5.3 0.00018 23.9 2.1 29 71-99 77-105 (212)
77 4hur_A Virginiamycin A acetylt 49.9 16 0.00054 22.4 3.0 44 14-57 139-184 (220)
78 3es4_A Uncharacterized protein 48.8 11 0.00037 21.2 2.0 22 1-22 70-91 (116)
79 3l0l_A Nuclear receptor ROR-ga 47.9 48 0.0016 20.6 5.4 44 48-91 53-96 (248)
80 3es1_A Cupin 2, conserved barr 47.6 19 0.00065 21.6 3.1 21 1-21 108-128 (172)
81 2pyt_A Ethanolamine utilizatio 45.0 20 0.0007 20.2 2.8 21 1-22 84-104 (133)
82 2qjv_A Uncharacterized IOLB-li 43.2 65 0.0022 20.9 5.2 48 1-48 58-109 (270)
83 3cqv_A Nuclear receptor subfam 43.1 51 0.0018 19.6 5.3 38 54-91 23-60 (199)
84 2fqp_A Hypothetical protein BP 41.6 31 0.0011 17.8 3.1 22 1-22 48-70 (97)
85 2i45_A Hypothetical protein; n 39.5 42 0.0014 17.5 4.6 45 1-50 57-101 (107)
86 1n83_A Nuclear receptor ROR-al 37.4 78 0.0027 20.0 6.2 36 56-91 70-105 (270)
87 3bcw_A Uncharacterized protein 36.5 19 0.00064 20.2 1.7 22 1-22 77-98 (123)
88 1o5u_A Novel thermotoga mariti 35.4 26 0.00089 18.7 2.2 21 1-21 58-78 (101)
89 2ozj_A Cupin 2, conserved barr 31.5 61 0.0021 17.0 5.6 41 1-47 67-107 (114)
90 3rns_A Cupin 2 conserved barre 31.3 91 0.0031 19.0 5.5 41 1-47 66-106 (227)
91 1nq7_A Nuclear receptor ROR-be 30.8 78 0.0027 19.6 4.1 35 57-91 56-90 (244)
92 1pdu_A DHR38, nuclear hormone 28.9 1.1E+02 0.0037 19.0 5.5 44 48-91 44-87 (244)
93 3myx_A Uncharacterized protein 28.5 43 0.0015 21.2 2.6 22 1-22 195-216 (238)
94 3vi8_A Peroxisome proliferator 28.4 1.2E+02 0.004 19.3 6.3 39 53-91 78-116 (273)
95 3lwc_A Uncharacterized protein 28.4 66 0.0022 17.6 3.1 20 1-21 68-87 (119)
96 4axo_A EUTQ, ethanolamine util 28.2 55 0.0019 19.1 2.8 20 1-21 93-112 (151)
97 2vpv_A Protein MIF2, MIF2P; nu 27.6 1E+02 0.0034 18.3 4.6 21 1-22 119-139 (166)
98 2bnm_A Epoxidase; oxidoreducta 27.5 97 0.0033 18.1 4.2 42 1-47 149-196 (198)
99 3oll_A Estrogen receptor beta; 26.5 1.2E+02 0.0039 18.6 5.5 41 51-91 33-73 (240)
100 2opk_A Hypothetical protein; p 26.0 34 0.0011 18.4 1.6 21 1-21 62-83 (112)
101 3fjs_A Uncharacterized protein 25.9 83 0.0028 16.8 5.8 39 1-45 65-103 (114)
102 3ltx_A Estrogen receptor; cons 25.8 1.2E+02 0.0041 18.6 5.5 41 51-91 36-76 (243)
103 3h8u_A Uncharacterized conserv 25.6 84 0.0029 16.7 3.3 21 1-21 69-89 (125)
104 2b8m_A Hypothetical protein MJ 24.1 52 0.0018 17.4 2.1 21 1-21 56-76 (117)
105 1rc6_A Hypothetical protein YL 23.8 1.4E+02 0.0047 18.6 4.5 43 1-47 90-132 (261)
106 3n00_A REV-ERBA-alpha; reverba 22.8 1.4E+02 0.0049 18.4 4.9 35 57-91 71-105 (245)
107 2f4p_A Hypothetical protein TM 22.7 95 0.0032 17.4 3.2 44 1-47 77-120 (147)
108 3d82_A Cupin 2, conserved barr 22.2 87 0.003 15.7 4.6 42 1-48 59-100 (102)
109 4h62_V Mediator of RNA polymer 21.6 56 0.0019 13.3 2.0 15 80-94 9-23 (31)
110 1osh_A BIle acid receptor; nuc 20.6 1.5E+02 0.0052 17.9 4.3 31 61-91 52-82 (232)
No 1
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=113.11 Aligned_cols=99 Identities=33% Similarity=0.634 Sum_probs=95.2
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCCC
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSVPIFKDL 80 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~~~~~~~l 80 (99)
|.|++.++++.+..+++|++|||.+++.+.||+++++|.++|.+|.|+++.|..++.+++..+..++..++++++.|..+
T Consensus 180 G~v~v~~~~~~v~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f~~L 259 (381)
T 4din_B 180 GEVDVYVNGEWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESL 259 (381)
T ss_dssp SEEEEEETTEEEEEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTTC
T ss_pred eEEEEEECCeEeeeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHHHhc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhHhhhccCCC
Q psy8133 81 PEETLIKISDVLEESLGSA 99 (99)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~a 99 (99)
+..++..+++.+..+.|++
T Consensus 260 s~~el~~l~~~~~~~~~~~ 278 (381)
T 4din_B 260 EKWERLTVADALEPVQFED 278 (381)
T ss_dssp CTTHHHHHHTTCBCCCBCS
T ss_pred cHHHHHHHHHhhhhccCCC
Confidence 9999999999999888874
No 2
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.74 E-value=8.2e-18 Score=109.91 Aligned_cols=99 Identities=66% Similarity=1.073 Sum_probs=94.2
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCCC
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSVPIFKDL 80 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~~~~~~~l 80 (99)
|.|++.+++..+..+++|++|||.+++.+.||+++++|.++|.+|.|++++|..++..++......+.+++++++.|..+
T Consensus 89 G~v~v~~~g~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~~~f~~l 168 (299)
T 3shr_A 89 GKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSL 168 (299)
T ss_dssp SCEEEEETTEEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHS
T ss_pred EEEEEEECCEEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhCHHhhhC
Confidence 78888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhHhhhccCCC
Q psy8133 81 PEETLIKISDVLEESLGSA 99 (99)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~a 99 (99)
+..++..++..+..+.|++
T Consensus 169 ~~~~l~~l~~~~~~~~~~~ 187 (299)
T 3shr_A 169 PEEILSKLADVLEETHYEN 187 (299)
T ss_dssp CHHHHHHHTTTCEEEEECT
T ss_pred CHHHHHHHHHhccEEEECC
Confidence 9999999999998888764
No 3
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.74 E-value=5.6e-17 Score=105.41 Aligned_cols=99 Identities=32% Similarity=0.624 Sum_probs=93.8
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCCC
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSVPIFKDL 80 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~~~~~~~l 80 (99)
|.|++..++..+..+++|++|||.+++.+.+|+++++|.++|.++.|+++.|..++..+|......+..+++++++|..+
T Consensus 89 G~v~~~~~g~~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l 168 (291)
T 2qcs_B 89 GEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESL 168 (291)
T ss_dssp CCEEEEETTEEEEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTC
T ss_pred eEEEEEECCeEEEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhchHhhhC
Confidence 78888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhHhhhccCCC
Q psy8133 81 PEETLIKISDVLEESLGSA 99 (99)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~a 99 (99)
+..++..++..+....|++
T Consensus 169 ~~~~~~~l~~~~~~~~~~~ 187 (291)
T 2qcs_B 169 DKWERLTVADALEPVQFED 187 (291)
T ss_dssp CHHHHHHHHHHCEEEEECT
T ss_pred CHHHHHHHHhhcEEEEECC
Confidence 9999999999998888764
No 4
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.4e-18 Score=107.92 Aligned_cols=99 Identities=35% Similarity=0.696 Sum_probs=93.2
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCCC
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSVPIFKDL 80 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~~~~~~~l 80 (99)
|.|++..++..+..+++|++|||.+++.+.+++++++|.++|.+|.|+++.|..++..+|..+..++..++++++.|..+
T Consensus 57 G~v~v~~~~~~~~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l 136 (246)
T 3of1_A 57 GTVDFYVNDNKVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKSL 136 (246)
T ss_dssp CCEEEESTTSCCEEECTTCEECHHHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTC
T ss_pred eEEEEEECCEEEEecCCCCeeehhHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChhhhcC
Confidence 77888877778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhHhhhccCCC
Q psy8133 81 PEETLIKISDVLEESLGSA 99 (99)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~a 99 (99)
+..++..++..+..+.|++
T Consensus 137 ~~~~l~~l~~~~~~~~~~~ 155 (246)
T 3of1_A 137 TTYDRAKLADALDTKIYQP 155 (246)
T ss_dssp CHHHHHHHHHTCEEEEECT
T ss_pred CHHHHHHHHHhhheEEeCC
Confidence 9999999999999888864
No 5
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.66 E-value=1.5e-16 Score=108.88 Aligned_cols=99 Identities=27% Similarity=0.555 Sum_probs=91.1
Q ss_pred CeEEEEEC----CeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhcCCC
Q psy8133 1 GRVEVSRE----NKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSVPI 76 (99)
Q Consensus 1 G~v~v~~~----~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~~~~ 76 (99)
|.|++... +..+..+++|++|||.+++.+.+|.++++|.++|.+|.|+++.|..++..++.....++..+++++++
T Consensus 195 G~v~v~~~~~G~~~~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v~l 274 (416)
T 3tnp_B 195 GTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPF 274 (416)
T ss_dssp CEEEEEEECSSCEEEEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGCGG
T ss_pred eEEEEEEecCCCEEEEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHhhchH
Confidence 77777653 24688999999999999999999999999999999999999999999999999988888999999999
Q ss_pred CCCCCHHHHHHHHhHhhhccCCC
Q psy8133 77 FKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 77 ~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
|..++..++..+++.+..+.|++
T Consensus 275 f~~Ls~~el~~L~~~l~~~~~~~ 297 (416)
T 3tnp_B 275 LKSLEVSERLKVVDVIGTKVYND 297 (416)
T ss_dssp GTTCCHHHHHHHHHHCEEEEECT
T ss_pred hhcCCHHHHHHHHhhceEEEECC
Confidence 99999999999999999888864
No 6
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.52 E-value=7.1e-14 Score=87.38 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=67.9
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCC--cceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhcC
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNC--KRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSV 74 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~--~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~~ 74 (99)
|.|++..++..+..+++|++|||.+++.+. +++++++|.++|+++.|++++|..++..+|.....++..+.+.+
T Consensus 125 G~v~v~~~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l 200 (212)
T 3ukn_A 125 GSMEVLKDNTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDL 200 (212)
T ss_dssp CCEEEESSSCEEEEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHE
T ss_pred cEEEEEECCeEEEEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhh
Confidence 788888888889999999999999999988 99999999999999999999999999999999988887776554
No 7
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.52 E-value=4.5e-14 Score=82.83 Aligned_cols=66 Identities=70% Similarity=1.174 Sum_probs=55.9
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHH
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAE 66 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~ 66 (99)
|.|++.+++..+..+++|++|||.+++.+.+++++++|.++|.++.|++++|.+++.++|..+++.
T Consensus 73 G~v~~~~~g~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~~ 138 (139)
T 3ocp_A 73 GKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE 138 (139)
T ss_dssp CCEEEEETTEEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC--------
T ss_pred CEEEEEECCEEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhhc
Confidence 788888888899999999999999999999999999999999999999999999999999887653
No 8
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.49 E-value=1.1e-13 Score=82.55 Aligned_cols=66 Identities=35% Similarity=0.717 Sum_probs=60.0
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHH
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAE 66 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~ 66 (99)
|.|++..++..+..+++|++||+.+++.+.+++++++|.++|.++.|++++|..++.+++..++.+
T Consensus 88 G~v~~~~~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~ 153 (154)
T 3pna_A 88 GEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 153 (154)
T ss_dssp SCEEEEETTEEEEEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC---
T ss_pred cEEEEEECCEEEEEecCCCEeeehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhc
Confidence 788888888899999999999999999999999999999999999999999999999998877654
No 9
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.48 E-value=3.6e-13 Score=80.29 Aligned_cols=70 Identities=21% Similarity=0.406 Sum_probs=64.8
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcC--CcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHH
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYN--CKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDF 70 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~--~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~ 70 (99)
|.|++...+..+..+++|++||+.+++.+ .+++++++|.++|+++.|++++|.+++.++|.+...++..+
T Consensus 77 G~v~~~~~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 77 GSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp SEEEEEETTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred eEEEEEECCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888889999999999999999988 79999999999999999999999999999999988876655
No 10
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.48 E-value=2.9e-13 Score=83.82 Aligned_cols=74 Identities=22% Similarity=0.434 Sum_probs=66.2
Q ss_pred CeEEEEE-CCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhcC
Q psy8133 1 GRVEVSR-ENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSV 74 (99)
Q Consensus 1 G~v~v~~-~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~~ 74 (99)
|.|++.. ++..+..+++|++|||.+++.+.+++++++|.++|.++.|++++|..++.++|.....+...+..++
T Consensus 121 G~v~~~~~~g~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl 195 (198)
T 2ptm_A 121 GIVDIIMSDGVIATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRL 195 (198)
T ss_dssp CCEEEECTTSCEEEEECTTCEESCHHHHHSSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC
T ss_pred CEEEEEecCCeEEEEecCCCEechHHHcCCCccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 6777764 4568899999999999999999999999999999999999999999999999999988877766654
No 11
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.47 E-value=2.7e-13 Score=79.35 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=62.2
Q ss_pred CeEEEEE---CC--eE---EeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhh
Q psy8133 1 GRVEVSR---EN--KY---LSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLK 72 (99)
Q Consensus 1 G~v~v~~---~~--~~---v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~ 72 (99)
|.|++.. ++ .. +..+++|++|||.+++.+.+++++++|.++|.++.|+++.|.+++.++|.+...++.++.+
T Consensus 56 G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 135 (142)
T 3mdp_A 56 GGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAA 135 (142)
T ss_dssp SCEEEECC---------CEEEEECTTCEECGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCceEeeeEEEecCCCEechHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 6677754 12 35 8899999999999999999999999999999999999999999999999999887776655
Q ss_pred c
Q psy8133 73 S 73 (99)
Q Consensus 73 ~ 73 (99)
.
T Consensus 136 ~ 136 (142)
T 3mdp_A 136 A 136 (142)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.43 E-value=2.1e-13 Score=81.83 Aligned_cols=69 Identities=29% Similarity=0.594 Sum_probs=59.0
Q ss_pred CeEEEEE--CC--eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHH
Q psy8133 1 GRVEVSR--EN--KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYND 69 (99)
Q Consensus 1 G~v~v~~--~~--~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~ 69 (99)
|.|++.. ++ ..+..+++|++|||.+++.+.+++++++|.++|.++.|++++|..++.++|..++.++.+
T Consensus 88 G~v~~~~~~~g~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~ 160 (161)
T 3idb_B 88 GTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYES 160 (161)
T ss_dssp SEEEEEEEETTEEEEEEEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC---
T ss_pred CEEEEEEcCCCCeEEEEEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHhc
Confidence 6777755 22 368889999999999999999999999999999999999999999999999987665543
No 13
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.40 E-value=5.6e-13 Score=82.78 Aligned_cols=73 Identities=25% Similarity=0.445 Sum_probs=62.2
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhc
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKS 73 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~ 73 (99)
|.|++...+.....+++|++|||.+++.+.+++++++|.++|.++.|++++|..++.++|.....+...+..+
T Consensus 122 G~v~v~~~~g~~~~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~r 194 (202)
T 3bpz_A 122 GVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDR 194 (202)
T ss_dssp CEEEEECTTSCCEEEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHH
T ss_pred cEEEEEECCCeEEEEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 6777765443345799999999999999999999999999999999999999999999999887766655444
No 14
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.39 E-value=1.2e-12 Score=76.37 Aligned_cols=73 Identities=29% Similarity=0.390 Sum_probs=62.9
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhcCC
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSVP 75 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~~~ 75 (99)
|.|++...+ ...+++|++||+.+++.+.+++++++|.++|.++.|+++.|..++.++|.+...+...+.+++.
T Consensus 61 G~v~~~~~~--~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r~~ 133 (138)
T 1vp6_A 61 GSVSVATPN--PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRG 133 (138)
T ss_dssp SCEEECSSS--CEEECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHCC
T ss_pred eEEEEEeCC--cceECCCCEeeehHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHhhc
Confidence 455554433 3578999999999999999999999999999999999999999999999999888887777654
No 15
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.39 E-value=1.1e-12 Score=80.74 Aligned_cols=71 Identities=15% Similarity=0.335 Sum_probs=61.9
Q ss_pred CeEEEEEC---C--eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHh
Q psy8133 1 GRVEVSRE---N--KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFL 71 (99)
Q Consensus 1 G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l 71 (99)
|.|++... + ..+..+++|++|||.+++.+.+++++++|.++|.++.|+++.|..++.++|.+...++.++.
T Consensus 89 G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~ 164 (187)
T 3gyd_A 89 GEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLL 164 (187)
T ss_dssp EEEEEEEEETTTEEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHH
Confidence 66777542 2 47889999999999999999999999999999999999999999999999999877775444
No 16
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.37 E-value=2.2e-12 Score=76.33 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=65.1
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCCc-ceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhcC
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNCK-RTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSV 74 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~~-~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~~ 74 (99)
|.|++.. ++ ..+..+++|++||+.+++.+.+ +.++++|.++|.++.|+++.|..++.++|.+...++..+..++
T Consensus 62 G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~rl 141 (154)
T 2z69_A 62 GCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL 141 (154)
T ss_dssp SCEEEECCCC-----CCEEECTTEEESGGGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCEEEEEEccCCCeeccHhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 6777764 22 2578999999999999999988 9999999999999999999999999999999988887776665
Q ss_pred CCC
Q psy8133 75 PIF 77 (99)
Q Consensus 75 ~~~ 77 (99)
...
T Consensus 142 ~~~ 144 (154)
T 2z69_A 142 HQR 144 (154)
T ss_dssp TCC
T ss_pred HHH
Confidence 443
No 17
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.36 E-value=2.7e-12 Score=75.48 Aligned_cols=71 Identities=25% Similarity=0.356 Sum_probs=61.3
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHh
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFL 71 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l 71 (99)
|.|++.. ++ ..+..+++|++||+.+++.+.++.++++|.++|.++.|+++.|..++.++|.+...++..+.
T Consensus 55 G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~ 130 (149)
T 2pqq_A 55 GKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVA 130 (149)
T ss_dssp SCEEEEEECTTSSEEEEEEECTTCEESGGGGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHH
T ss_pred cEEEEEEECCCCcEEEEEEcCCcCEechHHhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHH
Confidence 6777764 22 36889999999999999999999999999999999999999999999999998876665443
No 18
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.35 E-value=1.6e-12 Score=84.76 Aligned_cols=74 Identities=31% Similarity=0.447 Sum_probs=64.7
Q ss_pred CeEEEEECC------eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhcC
Q psy8133 1 GRVEVSREN------KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSV 74 (99)
Q Consensus 1 G~v~v~~~~------~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~~ 74 (99)
|.|++.+.. ..+..+++|++|||.+++.+.+|+++++|.++|.++.|++++|.+++.++|.+...++..+..++
T Consensus 207 G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~ 286 (299)
T 3shr_A 207 GKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKA 286 (299)
T ss_dssp SEEEEEECCSSSCCCEEEEEEETTCEECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred eEEEEEEecCCCCcceEEEEcCCCCEeChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhh
Confidence 778876643 47899999999999999999999999999999999999999999999999998887776665443
No 19
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.32 E-value=1.3e-11 Score=77.63 Aligned_cols=72 Identities=25% Similarity=0.347 Sum_probs=61.5
Q ss_pred CeEEEEEC---C--eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhh
Q psy8133 1 GRVEVSRE---N--KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLK 72 (99)
Q Consensus 1 G~v~v~~~---~--~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~ 72 (99)
|.|++... + ..+..+++|++||+.+++.+.+++++++|.++|.++.|+++.|..++.++|.+...++..+..
T Consensus 56 G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (231)
T 3e97_A 56 GVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLAR 132 (231)
T ss_dssp SEEEEEEECC--CEEEEEEEESSEEESTTTTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cEEEEEEECCCCceEEEEecCCCCEEeeHHHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 77887652 2 368999999999999999999999999999999999999999999999999887666544433
No 20
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.31 E-value=5.1e-12 Score=79.86 Aligned_cols=64 Identities=27% Similarity=0.420 Sum_probs=57.6
Q ss_pred CeEEEEECCe-EEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHH
Q psy8133 1 GRVEVSRENK-YLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQ 64 (99)
Q Consensus 1 G~v~v~~~~~-~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~ 64 (99)
|.|++.+.+. .+..+++|++|||.+++.+.||+++++|.++|.++.|++++|.+++...|.+..
T Consensus 175 G~v~v~~~~~~~~~~l~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~ 239 (246)
T 3of1_A 175 GAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK 239 (246)
T ss_dssp CEEEEEETTTEEEEEEETTCEECHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred cEEEEEEcCCceEEEcCCCCcccHHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence 7788877554 789999999999999999999999999999999999999999999998887643
No 21
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.30 E-value=5.5e-12 Score=85.33 Aligned_cols=72 Identities=25% Similarity=0.367 Sum_probs=61.7
Q ss_pred CeEEEEEC------CeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhh
Q psy8133 1 GRVEVSRE------NKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLK 72 (99)
Q Consensus 1 G~v~v~~~------~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~ 72 (99)
|.|++.+. ...+..+++|++|||.+++.+.+|+++++|.++|.++.|++++|.+++..+|.+..+.+.++-.
T Consensus 298 G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~ 375 (381)
T 4din_B 298 GTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNS 375 (381)
T ss_dssp SCEEEECCSSSSSCCCEEEEECTTCEECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHH
T ss_pred CEEEEEEecCCCCceEEEEEeCCCCEechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 67777652 2368999999999999999999999999999999999999999999999999887665554433
No 22
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.30 E-value=8e-12 Score=82.59 Aligned_cols=73 Identities=23% Similarity=0.361 Sum_probs=62.4
Q ss_pred CeEEEEEC----CeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhcC
Q psy8133 1 GRVEVSRE----NKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSV 74 (99)
Q Consensus 1 G~v~v~~~----~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~~ 74 (99)
|.|++.+. .+.+..+++|++|||.+++.+.+++++++|.++|.++.|++++|..++ ++|.+...++..+..++
T Consensus 63 G~v~~~~~~~~g~~~~~~~~~G~~fGe~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~~ 139 (333)
T 4ava_A 63 GSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQRL 139 (333)
T ss_dssp CCEEEEEECTTCCEEEEEECTTCEESHHHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCcEEEEEecCCCEeeHHHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHHH
Confidence 67777652 237899999999999999999999999999999999999999999999 89988877665554443
No 23
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.30 E-value=1.4e-11 Score=76.61 Aligned_cols=72 Identities=28% Similarity=0.475 Sum_probs=61.2
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhh
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLK 72 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~ 72 (99)
|.|++.. ++ ..+..+++|++||+.+++.+.+++++++|.++|.++.|+++.|..++.++|.+...++..+..
T Consensus 49 G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 125 (216)
T 4ev0_A 49 GKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLAR 125 (216)
T ss_dssp SCEEEEEECSSSCEEEEEEECTTCEECHHHHHHCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCEEEEEEecCCCEEeehhhcCCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 6777764 23 278999999999999999999999999999999999999999999999999887665544433
No 24
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.29 E-value=1.9e-11 Score=75.57 Aligned_cols=71 Identities=21% Similarity=0.347 Sum_probs=58.6
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCC----cceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHh
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNC----KRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFL 71 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~----~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l 71 (99)
|.|++.. ++ ..+..+++|++||+.+++.+. +++++++|.++|.++.||++.|..++.++|.+...++..+.
T Consensus 40 G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~ 119 (207)
T 2oz6_A 40 GSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMA 119 (207)
T ss_dssp SEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHH
Confidence 6777764 22 378899999999999999988 89999999999999999999999999999988765554433
No 25
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.28 E-value=1.1e-11 Score=77.83 Aligned_cols=70 Identities=20% Similarity=0.442 Sum_probs=60.1
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHH
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDF 70 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~ 70 (99)
|.|++.. ++ ..+..+++|++||+.+++.+.+++++++|.++|.++.||++.|..++.++|.+...++..+
T Consensus 56 G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 130 (227)
T 3d0s_A 56 GKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVL 130 (227)
T ss_dssp SCEEEEEECTTSCEEEEEEECTTCEESCHHHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHH
T ss_pred eEEEEEEECCCCcEEEEEEecCCCEEeeHHHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHH
Confidence 6777765 22 3688999999999999999999999999999999999999999999999998876555433
No 26
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.28 E-value=1.8e-11 Score=77.05 Aligned_cols=69 Identities=16% Similarity=0.236 Sum_probs=59.2
Q ss_pred CeEEEEE---C--CeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHH
Q psy8133 1 GRVEVSR---E--NKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYND 69 (99)
Q Consensus 1 G~v~v~~---~--~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~ 69 (99)
|.|++.. + ...+..++||++||+.+++.+.+++++++|.++|+++.|+++.|..++.++|.+...++..
T Consensus 60 G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~ 133 (232)
T 2gau_A 60 GKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKA 133 (232)
T ss_dssp SCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHH
T ss_pred CEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCCCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHH
Confidence 6777753 2 2378999999999999999999999999999999999999999999999999876655433
No 27
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.28 E-value=2.8e-11 Score=74.98 Aligned_cols=70 Identities=26% Similarity=0.349 Sum_probs=59.8
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCC-cceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHH
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNC-KRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDF 70 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~-~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~ 70 (99)
|.|++.. ++ ..+..++||++||+.+++.+. +++++++|.++|.++.|+++.|..++.++|.+...++..+
T Consensus 46 G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 121 (210)
T 3ryp_A 46 GSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 121 (210)
T ss_dssp SEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHH
T ss_pred CEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHH
Confidence 6777764 22 368899999999999999988 8999999999999999999999999999998876555433
No 28
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.28 E-value=1.3e-11 Score=80.09 Aligned_cols=70 Identities=27% Similarity=0.419 Sum_probs=60.3
Q ss_pred CeEEEEE---CC---eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHH
Q psy8133 1 GRVEVSR---EN---KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDF 70 (99)
Q Consensus 1 G~v~v~~---~~---~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~ 70 (99)
|.|++.+ ++ ..+..+++|++|||.+++.+.+|+++++|.++|.++.|++++|..++..+|.+..+.+..+
T Consensus 207 G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 207 GSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp EEEEEEEECSTTSCEEEEEEECTTCEECSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred CEEEEEEecCCCCccEEEEEeCCCCEecHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence 6777764 12 4789999999999999999999999999999999999999999999999998765555443
No 29
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.27 E-value=1.8e-11 Score=77.27 Aligned_cols=68 Identities=25% Similarity=0.368 Sum_probs=59.6
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHH
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYN 68 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~ 68 (99)
|.|++.. ++ ..+..+++|++||+.+++.+.+++++++|.++|.++.|+++.|..++.++|.+...++.
T Consensus 61 G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~ 133 (237)
T 3fx3_A 61 GWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILA 133 (237)
T ss_dssp SEEEEEEECTTSCEEEEEEEETTEEECHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHH
T ss_pred eEEEEEEECCCCCEEEEEEeCCCCEechHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHH
Confidence 7778765 22 37889999999999999999999999999999999999999999999999988765543
No 30
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.26 E-value=2.7e-11 Score=76.51 Aligned_cols=84 Identities=10% Similarity=0.091 Sum_probs=67.0
Q ss_pred CeEEEEE---C--CeEEeeeCCCCeeeehhhhcCCc-ceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHH-----
Q psy8133 1 GRVEVSR---E--NKYLSTLAPGKVFGELAILYNCK-RTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYND----- 69 (99)
Q Consensus 1 G~v~v~~---~--~~~v~~l~~G~~fGe~~l~~~~~-~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~----- 69 (99)
|.|++.. + +..+..+++|++||+.+++.+.+ ++++++|.++|+++.|+++.|..++.++|.+...++..
T Consensus 70 G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l 149 (232)
T 1zyb_A 70 GEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNRA 149 (232)
T ss_dssp SEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCEEEEEEccCCCeeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 7777765 2 24788999999999999999988 99999999999999999999999999999877655433
Q ss_pred --HhhcCCCCCCCCHHH
Q psy8133 70 --FLKSVPIFKDLPEET 84 (99)
Q Consensus 70 --~l~~~~~~~~l~~~~ 84 (99)
...++..+...+..+
T Consensus 150 ~~~~~~~~~l~~~~~~~ 166 (232)
T 1zyb_A 150 QNLYSRLWDEPTLDLKS 166 (232)
T ss_dssp HHHHHHTTSCCCCSHHH
T ss_pred HHHHHHHHHHhhcCHHH
Confidence 344455555555554
No 31
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.26 E-value=3.6e-11 Score=82.64 Aligned_cols=60 Identities=30% Similarity=0.408 Sum_probs=52.8
Q ss_pred CeEEEEEC---C----eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhH
Q psy8133 1 GRVEVSRE---N----KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGL 61 (99)
Q Consensus 1 G~v~v~~~---~----~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~ 61 (99)
|.|++... + ..+..+++|++|||.+ +.+.+++++++|.++|.+|.|+++.|..++.++|.
T Consensus 92 G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~ 158 (469)
T 1o7f_A 92 GSLDVKVSETSSHQDAVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (469)
T ss_dssp SCEEEEECSSSCGGGCEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGG
T ss_pred eEEEEEEecCCCCCcceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHH
Confidence 67777652 2 5789999999999999 99999999999999999999999999999876653
No 32
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.25 E-value=2.9e-11 Score=74.23 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=57.2
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeeh-hhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHH
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGEL-AILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEY 67 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~-~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~ 67 (99)
|.|++.. ++ ..+..++||++|||. +++.+.+++++++|.++|.++.||++.|..++.++|.+.....
T Consensus 57 G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~ 129 (194)
T 3dn7_A 57 GCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFR 129 (194)
T ss_dssp SEEEEEEECTTSCEEEEEEEETTCEECCHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHH
T ss_pred CeEEEEEECCCCCEEEEEEccCCcEEeehHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHH
Confidence 7788765 22 367889999999998 6788999999999999999999999999999999997765443
No 33
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.25 E-value=3.7e-11 Score=75.01 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=59.5
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCC-cceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHH
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNC-KRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDF 70 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~-~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~ 70 (99)
|.|++.. ++ ..+..+++|++||+.+++.+. ++.++++|.++|.++.|+++.|..++.++|.+...++..+
T Consensus 49 G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 124 (213)
T 1o5l_A 49 GTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDV 124 (213)
T ss_dssp SCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCCCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 6777764 22 368899999999999999876 9999999999999999999999999999998876555433
No 34
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.25 E-value=4.7e-11 Score=76.73 Aligned_cols=70 Identities=26% Similarity=0.349 Sum_probs=60.0
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCC-cceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHH
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNC-KRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDF 70 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~-~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~ 70 (99)
|.|++.. ++ ..+..+++|++||+.+++.+. +++++++|.++|.++.|+++.|..++.++|.+...++..+
T Consensus 96 G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l 171 (260)
T 3kcc_A 96 GSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQM 171 (260)
T ss_dssp CEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHH
T ss_pred CEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 7788765 22 368999999999999999988 8999999999999999999999999999998876555433
No 35
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.23 E-value=2.5e-11 Score=90.31 Aligned_cols=58 Identities=28% Similarity=0.452 Sum_probs=53.0
Q ss_pred CeEEEEECC-eEEeeeCCCCeeeehhhhcCCcceeEEEEccc-eEEEEECHHHHHHHHHh
Q psy8133 1 GRVEVSREN-KYLSTLAPGKVFGELAILYNCKRTATIKAASD-CKLWAIERQCFQTIMMR 58 (99)
Q Consensus 1 G~v~v~~~~-~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~-~~~~~i~~~~f~~~l~~ 58 (99)
|.|+|.+++ ..+..+++||+|||.+++.+.||.+|++|.++ |++++|++++|.+++.+
T Consensus 388 G~V~V~~~~~~~v~~L~~Gd~FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 388 GSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp SEEEEEETTTEEEEEEETTCEECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred eEEEEEEcCCcceEEecCCCcccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 788888754 57899999999999999999999999999885 99999999999999965
No 36
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.22 E-value=9e-11 Score=73.57 Aligned_cols=70 Identities=19% Similarity=0.352 Sum_probs=59.0
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCC-cceeEEEEccceEEEEECHHHHHHHHHhh-----hHHHHHHHHH
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNC-KRTATIKAASDCKLWAIERQCFQTIMMRT-----GLIRQAEYND 69 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~-~~~~~~~a~~~~~~~~i~~~~f~~~l~~~-----~~~~~~~~~~ 69 (99)
|.|++.. ++ ..+..+++|++|||.+++.+. +++++++|.++|.++.|+++.|..++.++ |.+...++..
T Consensus 61 G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~ 140 (230)
T 3iwz_A 61 GSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQ 140 (230)
T ss_dssp SCEEEEEECTTSCEEEEEEECTTCEESCGGGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCEEEEEEecCCCEEEehhhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 6777765 22 368899999999999999875 79999999999999999999999999999 8876655543
Q ss_pred H
Q psy8133 70 F 70 (99)
Q Consensus 70 ~ 70 (99)
+
T Consensus 141 l 141 (230)
T 3iwz_A 141 L 141 (230)
T ss_dssp H
T ss_pred H
Confidence 3
No 37
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.21 E-value=1.4e-10 Score=86.31 Aligned_cols=59 Identities=32% Similarity=0.462 Sum_probs=51.9
Q ss_pred CeEEEEEC-------CeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhh
Q psy8133 1 GRVEVSRE-------NKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTG 60 (99)
Q Consensus 1 G~v~v~~~-------~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~ 60 (99)
|+|.|... +..+..+++|++||| +++.+.||++|++|.++|++|+|++++|..++.+++
T Consensus 92 GsV~V~i~~~~~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~ 157 (999)
T 4f7z_A 92 GSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYR 157 (999)
T ss_dssp SEEEEEECSSSCTTSCEEEEEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred eEEEEEEecCCCCCCceeEEEecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhCh
Confidence 77888642 347899999999999 899999999999999999999999999999987654
No 38
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.21 E-value=1.4e-11 Score=84.34 Aligned_cols=64 Identities=23% Similarity=0.326 Sum_probs=52.7
Q ss_pred EEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhcC
Q psy8133 11 YLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSV 74 (99)
Q Consensus 11 ~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~~ 74 (99)
.+..+++|++|||.+++.+.+|+++++|.++|.++.|+++.|.+++..+|.+....+..+.+++
T Consensus 338 ~l~~l~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L 401 (416)
T 3tnp_B 338 EIARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQL 401 (416)
T ss_dssp EEEEECTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC--------
T ss_pred EEEEeCCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999887655554444443
No 39
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.18 E-value=5e-11 Score=81.96 Aligned_cols=67 Identities=24% Similarity=0.380 Sum_probs=57.3
Q ss_pred CeEEEEECC-eEEeeeCCCCeeeehhhhcCCcceeEEEEcc-ceEEEEECHHHHHHHHHhhhHHHHHHH
Q psy8133 1 GRVEVSREN-KYLSTLAPGKVFGELAILYNCKRTATIKAAS-DCKLWAIERQCFQTIMMRTGLIRQAEY 67 (99)
Q Consensus 1 G~v~v~~~~-~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~-~~~~~~i~~~~f~~~l~~~~~~~~~~~ 67 (99)
|.|++.+.+ ..+..+++|++|||.+++.+.+++++++|.+ +|.++.|++++|..++.++|.....+.
T Consensus 388 G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~ 456 (469)
T 1o7f_A 388 GSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLK 456 (469)
T ss_dssp SEEEEEETTTEEEEEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-----
T ss_pred eEEEEEEcCCeeEEEecCCCEEEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHH
Confidence 788887755 4889999999999999999999999999998 799999999999999999998776543
No 40
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.18 E-value=1.6e-10 Score=72.03 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=60.0
Q ss_pred CeEEEEE---CC--eEEeeeCCCCe--eeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHH
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKV--FGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDF 70 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~--fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~ 70 (99)
|.|++.. ++ ..+..++||++ ||+.+++.+.+++++++|.++|+++.||++.|..++.++|.+...++..+
T Consensus 53 G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l 129 (220)
T 3dv8_A 53 GQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELM 129 (220)
T ss_dssp SCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHH
Confidence 6777765 22 36789999999 79999999999999999999999999999999999999998876655433
No 41
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.17 E-value=1.9e-11 Score=76.55 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=59.7
Q ss_pred CeEEEEEC-----CeEEeeeCCCCeeeehhhhcCCc-ceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhh
Q psy8133 1 GRVEVSRE-----NKYLSTLAPGKVFGELAILYNCK-RTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLK 72 (99)
Q Consensus 1 G~v~v~~~-----~~~v~~l~~G~~fGe~~l~~~~~-~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~ 72 (99)
|.|++... ...+..++||++||+.+++.+.+ ++++++|.++|.++.|+++.|..++.++|.+...++..+..
T Consensus 59 G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (227)
T 3dkw_A 59 GCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 136 (227)
T ss_dssp SCEECCBCCGGGCCBCCCEECTTEEESCTTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCEEEEEEcCCCCEeeeHHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 55666441 23678899999999999999999 99999999999999999999999999999887665544433
No 42
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.15 E-value=2.4e-10 Score=72.64 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=58.5
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCCc--ceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHH
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNCK--RTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDF 70 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~~--~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~ 70 (99)
|.|++.. ++ ..+..++||++||+.+++.+.+ +.++++|.++|.++.|+++.|..++.++|.+...++..+
T Consensus 70 G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 146 (243)
T 3la7_A 70 GAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGL 146 (243)
T ss_dssp SCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 6777765 22 3688999999999999999876 568999999999999999999999999998876655433
No 43
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.10 E-value=6.2e-10 Score=70.87 Aligned_cols=67 Identities=9% Similarity=0.186 Sum_probs=56.0
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHH
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDF 70 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~ 70 (99)
|.|++.. ++ ..+..++||++||+ ++.+. ++++++|.++|+++.|+++.|..++.++|.+...++..+
T Consensus 59 G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l 130 (250)
T 3e6c_C 59 GKIKLDIIFEDGSEKLLYYAGGNSLIGK--LYPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNY 130 (250)
T ss_dssp SCEEEEEECTTSCEEEEEEECTTCEECC--CSCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHH
T ss_pred eEEEEEEECCCCCEEEEEEecCCCEEee--ecCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHH
Confidence 6777765 22 36889999999999 67777 999999999999999999999999999998876655433
No 44
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.10 E-value=6.5e-11 Score=68.85 Aligned_cols=60 Identities=23% Similarity=0.353 Sum_probs=51.0
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEE-EEccceEEEEECHHHHHHHHHhhh
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATI-KAASDCKLWAIERQCFQTIMMRTG 60 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~-~a~~~~~~~~i~~~~f~~~l~~~~ 60 (99)
|.|++...+.....+++|++||+.+++.+.++.+++ +|.++|.++.|++++|..++.+.+
T Consensus 67 G~v~~~~~~g~~~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 67 GTVEISHPDGKVENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp SCEEEECSSSCEEEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred CEEEEEcCCCcEEEecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 677776533223779999999999999999999998 999999999999999999987654
No 45
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.04 E-value=8e-11 Score=68.50 Aligned_cols=63 Identities=19% Similarity=0.275 Sum_probs=50.8
Q ss_pred CeEEEEE--CCe--EEe--eeCCCCeeeehhh---hcCCc------ceeEEEEccceEEEEECHHHHHHHHHhhhHHH
Q psy8133 1 GRVEVSR--ENK--YLS--TLAPGKVFGELAI---LYNCK------RTATIKAASDCKLWAIERQCFQTIMMRTGLIR 63 (99)
Q Consensus 1 G~v~v~~--~~~--~v~--~l~~G~~fGe~~l---~~~~~------~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~ 63 (99)
|.|++.. ++. .+. .+++|++|||.++ +.+.+ ++++++|.++|+++.|++++|.+++.++|.++
T Consensus 56 G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~ 133 (137)
T 1wgp_A 56 GRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSG 133 (137)
T ss_dssp CCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCT
T ss_pred eEEEEEEcCCCcceeeeeeeecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhH
Confidence 5666542 222 344 9999999999996 77764 58999999999999999999999999988764
No 46
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.01 E-value=5.6e-10 Score=68.66 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=45.9
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHH
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQ 53 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~ 53 (99)
|.|++.. ++ ..+..++||++||| +++.+.+++++++|.++|.++.||++.|.
T Consensus 26 G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~~~ 82 (195)
T 3b02_A 26 GLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRAMD 82 (195)
T ss_dssp SCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGGCC
T ss_pred CEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHHcC
Confidence 6777765 22 36899999999999 99999999999999999999999999886
No 47
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.00 E-value=2.7e-09 Score=67.49 Aligned_cols=69 Identities=6% Similarity=0.056 Sum_probs=55.2
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCCcc--eeEEEEc-cceEEEEECHHHHHHHHHhhhHHHHHHHHHH
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNCKR--TATIKAA-SDCKLWAIERQCFQTIMMRTGLIRQAEYNDF 70 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~~~--~~~~~a~-~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~ 70 (99)
|.|++.+ ++ ..+..+ +|++||+.+++.+.++ ..++.|. ++|.++.|+++.|..++.++|.+...++..+
T Consensus 45 G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 121 (238)
T 2bgc_A 45 GITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTL 121 (238)
T ss_dssp SEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHH
Confidence 7788765 22 356778 9999999999998864 6677777 5999999999999999999998876655444
No 48
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.98 E-value=5.2e-11 Score=79.77 Aligned_cols=72 Identities=29% Similarity=0.403 Sum_probs=0.0
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHhhcC
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSV 74 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l~~~ 74 (99)
|.+++...+ ...+++|+.|||.+++.+.+++++++|.++|+++.+++++|.+++.++|.........+.+++
T Consensus 278 G~v~v~~~~--~~~l~~G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl 349 (355)
T 3beh_A 278 GSVSVATPN--PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERR 349 (355)
T ss_dssp --------------------------------------------------------------------------
T ss_pred eEEEEEECC--eeEECCCCEEeehHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 455554433 357999999999999999999999999999999999999999999999998877766555544
No 49
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=98.97 E-value=3.3e-09 Score=66.16 Aligned_cols=64 Identities=25% Similarity=0.285 Sum_probs=53.0
Q ss_pred CeEEEEE--CC--eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHHHHh
Q psy8133 1 GRVEVSR--EN--KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFL 71 (99)
Q Consensus 1 G~v~v~~--~~--~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~~~l 71 (99)
|.|++.. ++ ..+..++||++||+ +++++++|.++|+++.||++.|..++.++|.+...++..+.
T Consensus 54 G~v~~~~~~~G~~~~~~~~~~G~~~G~-------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~ 121 (220)
T 2fmy_A 54 GRVRVYLAYEDKEFTLAILEAGDIFCT-------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLG 121 (220)
T ss_dssp SEEEEEEECSSCEEEEEEEETTCEEES-------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred cEEEEEECCCCCEEEEEEcCCCCEeCC-------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHH
Confidence 6677742 23 36889999999999 88999999999999999999999999999988766554443
No 50
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=98.89 E-value=1.1e-08 Score=63.99 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=50.9
Q ss_pred CeEEEEE--CC--eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHHHHHHhhhHHHHHHHH
Q psy8133 1 GRVEVSR--EN--KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYN 68 (99)
Q Consensus 1 G~v~v~~--~~--~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~~~~~~~~~~ 68 (99)
|.|++.. ++ ..+..++||++|| .+++++++|.++|+++.|+++.|..++.++|.+...++.
T Consensus 50 G~v~~~~~~~G~~~~~~~~~~G~~fG-------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~ 114 (222)
T 1ft9_A 50 GRLRVYLVGEEREISLFYLTSGDMFC-------MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIA 114 (222)
T ss_dssp SEEEEEEEETTEEEEEEEEETTCEEE-------SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHH
T ss_pred cEEEEEECCCCCEEEEEEcCCCCEec-------CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHH
Confidence 6677642 33 3688999999999 788999999999999999999999999999977655543
No 51
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=98.85 E-value=4.1e-09 Score=76.28 Aligned_cols=63 Identities=25% Similarity=0.441 Sum_probs=57.0
Q ss_pred CeEEEEECC-eEEeeeCCCCeeeehhhhcCCcceeEEEEcc-ceEEEEECHHHHHHHHHhhhHHH
Q psy8133 1 GRVEVSREN-KYLSTLAPGKVFGELAILYNCKRTATIKAAS-DCKLWAIERQCFQTIMMRTGLIR 63 (99)
Q Consensus 1 G~v~v~~~~-~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~-~~~~~~i~~~~f~~~l~~~~~~~ 63 (99)
|.|++.+.+ ..+..+++|++|||.+++.+.+++++++|.+ +|+++.|++++|.+++.++|...
T Consensus 83 G~V~v~~~g~~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~ 147 (694)
T 3cf6_E 83 GSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANT 147 (694)
T ss_dssp SEEEEEETTTEEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCC
T ss_pred EEEEEEEeCCEEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHH
Confidence 788887755 4889999999999999999999999999999 59999999999999999888663
No 52
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.62 E-value=2.7e-08 Score=61.29 Aligned_cols=51 Identities=29% Similarity=0.419 Sum_probs=43.3
Q ss_pred CeEEEEE---CC--eEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHHHHH
Q psy8133 1 GRVEVSR---EN--KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQ 53 (99)
Q Consensus 1 G~v~v~~---~~--~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~~f~ 53 (99)
|.|++.. ++ ..+..++||++||+ +++.+.+++++++|.++|.++.| ++.|.
T Consensus 34 G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 34 GLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp SCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEEEEEC-CSSCC
T ss_pred CEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEEEEEE-hHhcC
Confidence 6777765 22 36889999999999 88889999999999999999999 86654
No 53
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=94.16 E-value=0.0041 Score=36.39 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=37.3
Q ss_pred CHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 48 ERQCFQTIMMRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 48 ~~~~f~~~l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
..+.+...+..........+..+++++++|..+++.++..++..+..+.|++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ 68 (161)
T 3idb_B 17 EDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKE 68 (161)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECT
T ss_pred hcccCCcccCCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCC
Confidence 3344444444444556667889999999999999999999999999888864
No 54
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=93.36 E-value=0.12 Score=29.18 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 63 RQAEYNDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 63 ~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
....+..+++++++|..+++.++..+...+..+.|++
T Consensus 17 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 53 (139)
T 3ocp_A 17 SKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGK 53 (139)
T ss_dssp HHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECS
T ss_pred HHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCC
Confidence 4556788999999999999999999999998888864
No 55
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=91.96 E-value=0.038 Score=31.97 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 62 IRQAEYNDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 62 ~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
.....+..+++++++|..++..++..+...+..+.|++
T Consensus 31 ~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 68 (154)
T 3pna_A 31 KTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIA 68 (154)
T ss_dssp HHHHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECT
T ss_pred HHHHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECC
Confidence 34556778999999999999999999999998888764
No 56
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=91.00 E-value=0.18 Score=28.89 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 63 RQAEYNDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 63 ~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
...+...+++++++|..+++.++..+...+..+.|++
T Consensus 21 ~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 57 (160)
T 4f8a_A 21 CVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAP 57 (160)
T ss_dssp HHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECT
T ss_pred HHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCC
Confidence 3445678999999999999999999999999888864
No 57
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=89.96 E-value=0.28 Score=27.85 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=30.6
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 65 AEYNDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 65 ~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
..+..+++++++|..+++.++..+...+..+.|++
T Consensus 8 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 42 (154)
T 2z69_A 8 RVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDK 42 (154)
T ss_dssp HHHHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECT
T ss_pred hhHHHHhhcChhhcCCCHHHHHHHHhhCcEEEecC
Confidence 34567899999999999999999999998888864
No 58
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=89.48 E-value=0.35 Score=28.86 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 64 QAEYNDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 64 ~~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
...+..+++++++|..+++.++..+...+..+.|++
T Consensus 34 ~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ 69 (187)
T 3gyd_A 34 FEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPR 69 (187)
T ss_dssp HHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECT
T ss_pred HHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCC
Confidence 345678999999999999999999999998888864
No 59
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=89.01 E-value=0.36 Score=26.87 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=29.5
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 67 YNDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 67 ~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
..++++++++|..+++.++..+...+..+.|++
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 41 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPA 41 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECT
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCC
Confidence 456899999999999999999999998888864
No 60
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=88.93 E-value=0.22 Score=28.04 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=28.8
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 68 NDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 68 ~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
.+++++++.|..+++.++..+...+..+.|++
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 35 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLAR 35 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECT
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCC
Confidence 46889999999999999999999999888864
No 61
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=88.01 E-value=0.19 Score=28.13 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=27.9
Q ss_pred HHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 69 DFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 69 ~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
++++++++|..+++.++..++..+..+.|++
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 36 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTE 36 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCT
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCC
Confidence 4688999999999999999999999988874
No 62
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=87.38 E-value=0.51 Score=28.24 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=30.4
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 65 AEYNDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 65 ~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
.....+++++++|..+++..+..++..++.+.|++
T Consensus 67 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ 101 (198)
T 2ptm_A 67 YNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQP 101 (198)
T ss_dssp HHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECT
T ss_pred HHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCC
Confidence 34568899999999999999999999998888764
No 63
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=86.60 E-value=0.52 Score=26.23 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=29.3
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHhHhhhccCC
Q psy8133 66 EYNDFLKSVPIFKDLPEETLIKISDVLEESLGS 98 (99)
Q Consensus 66 ~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~ 98 (99)
.+..++++++.|..++..++..++..+..+.|+
T Consensus 13 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~ 45 (134)
T 2d93_A 13 QLLEFMHQLPAFANMTMSVRRELCSVMIFEVVE 45 (134)
T ss_dssp HHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEEC
T ss_pred HHHHHHhCCcchhhCCHHHHHHHHHhheEEEec
Confidence 456789999999999999999999999888876
No 64
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=84.64 E-value=0.56 Score=28.60 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=28.8
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 68 NDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 68 ~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
.++++++++|..+++.++..+...+..+.|++
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 36 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQP 36 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECC
Confidence 46899999999999999999999998888864
No 65
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=84.32 E-value=0.72 Score=27.95 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=29.5
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 67 YNDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 67 ~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
...+++++++|..+++.++..+...+..+.|++
T Consensus 7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 39 (227)
T 3dkw_A 7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDK 39 (227)
T ss_dssp SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCT
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECC
Confidence 357899999999999999999999999888874
No 66
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=83.75 E-value=0.19 Score=28.14 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=28.2
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 68 NDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 68 ~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
.++++++++|..+++.++..+...+..+.|++
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 36 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPT 36 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECT
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCC
Confidence 35788999999999999999999998888864
No 67
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=82.71 E-value=0.38 Score=29.07 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=26.7
Q ss_pred HHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 69 DFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 69 ~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
++++++++|..+++.++..+...+..+.|++
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 33 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKK 33 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECT
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCC
Confidence 5789999999999999999999998888874
No 68
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=81.30 E-value=0.58 Score=28.14 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 65 AEYNDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 65 ~~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
.....+++++++|..+++..+..++..+..+.|++
T Consensus 68 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ 102 (202)
T 3bpz_A 68 FNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQP 102 (202)
T ss_dssp HHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECT
T ss_pred HHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECC
Confidence 34467899999999999999999999999888764
No 69
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=80.73 E-value=1.1 Score=29.08 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=28.9
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 68 NDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 68 ~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
.++++++++|..+++.++..+...+..+.|++
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 43 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAA 43 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECT
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECC
Confidence 46899999999999999999999999888864
No 70
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=78.94 E-value=0.95 Score=33.05 Aligned_cols=53 Identities=17% Similarity=0.143 Sum_probs=38.2
Q ss_pred ECHHHHHHHHHhhhHHHH----HHHHHHhhcCCCCCCCCHHHHHHHHhHhh-hccCCC
Q psy8133 47 IERQCFQTIMMRTGLIRQ----AEYNDFLKSVPIFKDLPEETLIKISDVLE-ESLGSA 99 (99)
Q Consensus 47 i~~~~f~~~l~~~~~~~~----~~~~~~l~~~~~~~~l~~~~~~~l~~~~~-~~~~~a 99 (99)
.|.+.|..++...|..+. ..+..+++++++|..++..++..++..+. .+.|++
T Consensus 6 ~p~~~~r~iL~k~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~k 63 (694)
T 3cf6_E 6 FPDAHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKG 63 (694)
T ss_dssp -----CHHHHHSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECST
T ss_pred CcHHHHHHHHcCChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECC
Confidence 466777888876665542 34677899999999999999999999887 567764
No 71
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=77.20 E-value=0.45 Score=28.99 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=29.1
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 67 YNDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 67 ~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
+.++++++++|..+++.++..+...+..+.|++
T Consensus 4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 36 (227)
T 3d0s_A 4 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPR 36 (227)
T ss_dssp CHHHHTTSSTTSSCCSSTTHHHHTTSCEEEECT
T ss_pred HHHHHhcChhhcCCCHHHHHHHHhhCeEEEeCC
Confidence 456899999999999999999999998888864
No 72
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=77.12 E-value=0.93 Score=26.79 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=28.6
Q ss_pred HHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 68 NDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 68 ~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
..+++.++.|..+++.++..+...+..+.|++
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 37 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRK 37 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcC
Confidence 56888899999999999999999999888874
No 73
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=76.96 E-value=2.2 Score=26.10 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=30.0
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHHhH--hhhccCCC
Q psy8133 65 AEYNDFLKSVPIFKDLPEETLIKISDV--LEESLGSA 99 (99)
Q Consensus 65 ~~~~~~l~~~~~~~~l~~~~~~~l~~~--~~~~~~~a 99 (99)
..+..+++++++|..+++.++..+... +..+.|++
T Consensus 14 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ 50 (232)
T 1zyb_A 14 ETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKA 50 (232)
T ss_dssp HHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECT
T ss_pred HHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECC
Confidence 345678999999999999999999998 88887764
No 74
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=76.68 E-value=0.54 Score=28.82 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=30.2
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 66 EYNDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 66 ~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
....+++++++|..+++.++..+...+..+.|++
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~ 41 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDR 41 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECT
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECC
Confidence 4567899999999999999999999998888874
No 75
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=75.61 E-value=1 Score=27.26 Aligned_cols=34 Identities=6% Similarity=-0.084 Sum_probs=18.2
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 66 EYNDFLKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 66 ~~~~~l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
.....+++.++|..+++.++..+...+..+.|++
T Consensus 8 ~~~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~ 41 (230)
T 3iwz_A 8 VVTTTVRNATPSLTLDAGTIERFLAHSHRRRYPT 41 (230)
T ss_dssp --------------CCHHHHHHHHTTSEEEEECT
T ss_pred eehhhhhhcchhccCCHHHHHHHHHhCeEEEeCC
Confidence 3467889999999999999999999999888874
No 76
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=60.48 E-value=5.3 Score=23.94 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=25.1
Q ss_pred hhcCCCCCCCCHHHHHHHHhHhhhccCCC
Q psy8133 71 LKSVPIFKDLPEETLIKISDVLEESLGSA 99 (99)
Q Consensus 71 l~~~~~~~~l~~~~~~~l~~~~~~~~~~a 99 (99)
+.++++|..+++..+..++..++.+.|++
T Consensus 77 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ 105 (212)
T 3ukn_A 77 LLQLPLFESASRGCLRSLSLIIKTSFCAP 105 (212)
T ss_dssp GGGSGGGTTCCHHHHHHHHHHCEEEEECT
T ss_pred HHhcHHhhcCCHHHHHHHHHHhheEEeCC
Confidence 34799999999999999999998888764
No 77
>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A
Probab=49.89 E-value=16 Score=22.42 Aligned_cols=44 Identities=9% Similarity=0.152 Sum_probs=31.9
Q ss_pred eeCCCCeeeehhhhcCCcceeEEEEccceEEEE--ECHHHHHHHHH
Q psy8133 14 TLAPGKVFGELAILYNCKRTATIKAASDCKLWA--IERQCFQTIMM 57 (99)
Q Consensus 14 ~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~--i~~~~f~~~l~ 57 (99)
.++.|...|..+.+.+.--+.++.+-.++.+.. ++.+....++.
T Consensus 139 ~IG~gavIgagsvV~~dVp~~~vv~G~PAk~ir~r~~~~~i~~l~~ 184 (220)
T 4hur_A 139 KIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFIRKRFSDGVIEEWLA 184 (220)
T ss_dssp EECTTCEECTTCEECSCBCTTEEEETTTTEEEEESSCHHHHHHHHH
T ss_pred EECCCCEEcCCCEEcccCCCCcEEeCCCCEeehhcCCHHHHHHHHH
Confidence 477788888888877665577788888888876 66666665553
No 78
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=48.78 E-value=11 Score=21.20 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=14.4
Q ss_pred CeEEEEECCeEEeeeCCCCeee
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFG 22 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fG 22 (99)
|++.+..++.....+++||.|-
T Consensus 70 G~~~lt~ddG~~~~l~aGD~~~ 91 (116)
T 3es4_A 70 GEALYSQADADPVKIGPGSIVS 91 (116)
T ss_dssp CCEEEEETTCCCEEECTTEEEE
T ss_pred eEEEEEeCCCeEEEECCCCEEE
Confidence 5566655544456788888763
No 79
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=47.87 E-value=48 Score=20.64 Aligned_cols=44 Identities=11% Similarity=-0.044 Sum_probs=31.1
Q ss_pred CHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhH
Q psy8133 48 ERQCFQTIMMRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISDV 91 (99)
Q Consensus 48 ~~~~f~~~l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~ 91 (99)
++......+.+.....-.....+.++++.|..|+.++...|...
T Consensus 53 ~~~~~~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~ 96 (248)
T 3l0l_A 53 SMWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKA 96 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHH
Confidence 34444445555555556667899999999999999987766543
No 80
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=47.56 E-value=19 Score=21.57 Aligned_cols=21 Identities=19% Similarity=0.412 Sum_probs=13.6
Q ss_pred CeEEEEECCeEEeeeCCCCee
Q psy8133 1 GRVEVSRENKYLSTLAPGKVF 21 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~f 21 (99)
|++.+..++.....+++||++
T Consensus 108 Gel~l~ld~ge~~~L~~GDsi 128 (172)
T 3es1_A 108 GEIELELDDGAKRTVRQGGII 128 (172)
T ss_dssp SCEEEECGGGCEEEECTTCEE
T ss_pred CEEEEEECCCeEEEECCCCEE
Confidence 555665552234679999997
No 81
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=45.02 E-value=20 Score=20.22 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=14.4
Q ss_pred CeEEEEECCeEEeeeCCCCeee
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFG 22 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fG 22 (99)
|++.+..+++.. .+++||+|-
T Consensus 84 G~~~l~~~g~~~-~l~~GD~i~ 104 (133)
T 2pyt_A 84 GELHVRHEGETM-IAKAGDVMF 104 (133)
T ss_dssp EEEEEEETTEEE-EEETTCEEE
T ss_pred CEEEEEECCEEE-EECCCcEEE
Confidence 556666666544 799999873
No 82
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=43.25 E-value=65 Score=20.86 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=27.8
Q ss_pred CeEEEEECCeEEeee-CCCCeeeeh---hhhcCCcceeEEEEccceEEEEEC
Q psy8133 1 GRVEVSRENKYLSTL-APGKVFGEL---AILYNCKRTATIKAASDCKLWAIE 48 (99)
Q Consensus 1 G~v~v~~~~~~v~~l-~~G~~fGe~---~l~~~~~~~~~~~a~~~~~~~~i~ 48 (99)
|.+.|..+++....+ ++.+.|.+. ++.-..-..+++.|.++++++...
T Consensus 58 G~~~V~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~~v~s 109 (270)
T 2qjv_A 58 GLASVXAADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLELAVCS 109 (270)
T ss_dssp SCEEEEETTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEEEEEE
T ss_pred ceEEEEECCEEEeccccccccccCCCCcEEEECCCCEEEEEecCCceEEEEe
Confidence 445555555443332 355666654 333333347888899898887654
No 83
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=43.13 E-value=51 Score=19.62 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=27.0
Q ss_pred HHHHhhhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhH
Q psy8133 54 TIMMRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISDV 91 (99)
Q Consensus 54 ~~l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~ 91 (99)
..+.+..........++.++++.|..++.++...|...
T Consensus 23 ~~~~~~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~ 60 (199)
T 3cqv_A 23 EEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKA 60 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHH
Confidence 33334444455566789999999999999987766544
No 84
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=41.61 E-value=31 Score=17.78 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=14.5
Q ss_pred CeEEEEECCe-EEeeeCCCCeee
Q psy8133 1 GRVEVSRENK-YLSTLAPGKVFG 22 (99)
Q Consensus 1 G~v~v~~~~~-~v~~l~~G~~fG 22 (99)
|++.+..++. ....+.+||.+=
T Consensus 48 G~~~~~~~~g~~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 48 GPLLLETPEGSVTSQLTRGVSYT 70 (97)
T ss_dssp EEEEEEETTEEEEEEECTTCCEE
T ss_pred cEEEEEeCCCCEEEEEcCCCEEE
Confidence 4556655553 456789998873
No 85
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=39.53 E-value=42 Score=17.51 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=23.9
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEECHH
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQ 50 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~~~ 50 (99)
|++.+..++.....+++||.+= +-.+.+.. ..+.+++.++.++..
T Consensus 57 G~~~~~~~~~~~~~l~~Gd~~~---ip~~~~H~--~~~~~~~~~l~i~~~ 101 (107)
T 2i45_A 57 GDMAVDFADGGSMTIREGEMAV---VPKSVSHR--PRSENGCSLVLIELS 101 (107)
T ss_dssp SCEEEEETTSCEEEECTTEEEE---ECTTCCEE--EEEEEEEEEEEEECC
T ss_pred CEEEEEECCCcEEEECCCCEEE---ECCCCcEe--eEeCCCeEEEEEECC
Confidence 5555555552345688888762 11233333 333456777776543
No 86
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=37.38 E-value=78 Score=20.01 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=25.9
Q ss_pred HHhhhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhH
Q psy8133 56 MMRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISDV 91 (99)
Q Consensus 56 l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~ 91 (99)
+.+..........++.++++.|..|+.++...|...
T Consensus 70 ~~~~~~~~l~~~VewaK~lP~F~~L~~~DQi~LLk~ 105 (270)
T 1n83_A 70 CAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKA 105 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChhhcCHHHHHHHHHH
Confidence 333444445566789999999999999987666543
No 87
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=36.49 E-value=19 Score=20.15 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=13.3
Q ss_pred CeEEEEECCeEEeeeCCCCeee
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFG 22 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fG 22 (99)
|++.+..++.....+++||++-
T Consensus 77 G~~~l~~~~g~~~~l~~GD~~~ 98 (123)
T 3bcw_A 77 GEARLVDPDGTVHAVKAGDAFI 98 (123)
T ss_dssp EEEEEECTTCCEEEEETTCEEE
T ss_pred EEEEEEECCCeEEEECCCCEEE
Confidence 4555555233345689998863
No 88
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=35.40 E-value=26 Score=18.74 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=12.9
Q ss_pred CeEEEEECCeEEeeeCCCCee
Q psy8133 1 GRVEVSRENKYLSTLAPGKVF 21 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~f 21 (99)
|++.+..++.....+++||.+
T Consensus 58 G~~~~~i~~g~~~~l~~GD~i 78 (101)
T 1o5u_A 58 GKVEVTTEDGKKYVIEKGDLV 78 (101)
T ss_dssp EEEEEEETTCCEEEEETTCEE
T ss_pred CEEEEEECCCCEEEECCCCEE
Confidence 455555552334568898886
No 89
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=31.55 E-value=61 Score=17.03 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=21.2
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEE
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAI 47 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i 47 (99)
|++.+..+++ ...+++||++= +-.+.+. ++.+.+++.++.+
T Consensus 67 G~~~~~i~~~-~~~l~~Gd~i~---i~~~~~H--~~~~~~~~~~~~i 107 (114)
T 2ozj_A 67 GEAVITFDDQ-KIDLVPEDVLM---VPAHKIH--AIAGKGRFKMLQI 107 (114)
T ss_dssp EEEEEEETTE-EEEECTTCEEE---ECTTCCB--EEEEEEEEEEEEE
T ss_pred CEEEEEECCE-EEEecCCCEEE---ECCCCcE--EEEeCCCcEEEEE
Confidence 4455555554 45688988752 2223333 3444456655543
No 90
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=31.29 E-value=91 Score=18.99 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=24.7
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEE
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAI 47 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i 47 (99)
|++++..+++. ..+++||++= .....+..+.|.+++.++.+
T Consensus 66 G~~~~~i~~~~-~~l~~Gd~~~-----~p~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 66 GNGEIFIENNK-KTISNGDFLE-----ITANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp SEEEEEESSCE-EEEETTEEEE-----ECSSCCEEEEESSSEEEEEE
T ss_pred CEEEEEECCEE-EEECCCCEEE-----ECCCCCEEEEECCCcEEEEE
Confidence 45555555443 5678887642 12223556778899988866
No 91
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=30.77 E-value=78 Score=19.56 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=25.1
Q ss_pred HhhhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhH
Q psy8133 57 MRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISDV 91 (99)
Q Consensus 57 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~ 91 (99)
.+.....-.....+.++++.|..++.++...|...
T Consensus 56 ~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~ 90 (244)
T 1nq7_A 56 AIQITHAIQYVVEFAKRITGFMELCQNDQILLLKS 90 (244)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 33334445556789999999999999887666543
No 92
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=28.85 E-value=1.1e+02 Score=19.02 Aligned_cols=44 Identities=11% Similarity=0.001 Sum_probs=29.4
Q ss_pred CHHHHHHHHHhhhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhH
Q psy8133 48 ERQCFQTIMMRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISDV 91 (99)
Q Consensus 48 ~~~~f~~~l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~ 91 (99)
+.......+.+..........++.++++.|..|+.++...|...
T Consensus 44 ~~~~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~ 87 (244)
T 1pdu_A 44 SEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQS 87 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 34444444444444455556789999999999999887666543
No 93
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=28.52 E-value=43 Score=21.18 Aligned_cols=22 Identities=36% Similarity=0.318 Sum_probs=14.6
Q ss_pred CeEEEEECCeEEeeeCCCCeee
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFG 22 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fG 22 (99)
|++.+..++.....+++||.|-
T Consensus 195 G~v~lt~~~G~~~~~~aGD~~~ 216 (238)
T 3myx_A 195 GRVVLSLENGSSLTVNTGDTVF 216 (238)
T ss_dssp CCEEEEETTSCEEEECTTCEEE
T ss_pred eEEEEEeCCCCEEEECCCCEEE
Confidence 5666665444456789998873
No 94
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=28.36 E-value=1.2e+02 Score=19.29 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=28.3
Q ss_pred HHHHHhhhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhH
Q psy8133 53 QTIMMRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISDV 91 (99)
Q Consensus 53 ~~~l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~ 91 (99)
+..+..........+.++.+++|.|..|+.++...|...
T Consensus 78 ~~~~~~~~~~~v~~iVewAK~iPgF~~L~~~DQi~LLk~ 116 (273)
T 3vi8_A 78 FHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKY 116 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCcCcccCCHHHHHHHHHH
Confidence 333444444556667889999999999999987766543
No 95
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=28.35 E-value=66 Score=17.58 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=13.3
Q ss_pred CeEEEEECCeEEeeeCCCCee
Q psy8133 1 GRVEVSRENKYLSTLAPGKVF 21 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~f 21 (99)
|++.+..+++ ...+++||++
T Consensus 68 G~~~~~~~g~-~~~l~~GD~v 87 (119)
T 3lwc_A 68 GRLSVSTDGE-TVTAGPGEIV 87 (119)
T ss_dssp EEEEEEETTE-EEEECTTCEE
T ss_pred CEEEEEECCE-EEEECCCCEE
Confidence 4555555554 4569999886
No 96
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=28.16 E-value=55 Score=19.12 Aligned_cols=20 Identities=10% Similarity=0.416 Sum_probs=13.8
Q ss_pred CeEEEEECCeEEeeeCCCCee
Q psy8133 1 GRVEVSRENKYLSTLAPGKVF 21 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~f 21 (99)
|++.+..+++ ...+++||+|
T Consensus 93 G~~~l~i~g~-~~~l~~GD~i 112 (151)
T 4axo_A 93 GTLDIIIDGR-KVSASSGELI 112 (151)
T ss_dssp EEEEEEETTE-EEEEETTCEE
T ss_pred eEEEEEECCE-EEEEcCCCEE
Confidence 5666666554 5669999886
No 97
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=27.60 E-value=1e+02 Score=18.30 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=14.6
Q ss_pred CeEEEEECCeEEeeeCCCCeee
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFG 22 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fG 22 (99)
|++.+..+++ ...+++||+|=
T Consensus 119 G~v~vtl~g~-~~~L~~Gds~~ 139 (166)
T 2vpv_A 119 GIVEVTVCKN-KFLSVKGSTFQ 139 (166)
T ss_dssp SEEEEEETTE-EEEEETTCEEE
T ss_pred eEEEEEECCE-EEEEcCCCEEE
Confidence 6677766664 44689999863
No 98
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=27.47 E-value=97 Score=18.09 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=22.5
Q ss_pred CeEEEEECCe---EEeeeCCCCeeeehhhhcCCcceeEEEEc---cceEEEEE
Q psy8133 1 GRVEVSRENK---YLSTLAPGKVFGELAILYNCKRTATIKAA---SDCKLWAI 47 (99)
Q Consensus 1 G~v~v~~~~~---~v~~l~~G~~fGe~~l~~~~~~~~~~~a~---~~~~~~~i 47 (99)
|++.+..++. ....+++||++=- -.+.+ ..+... +++.++.+
T Consensus 149 G~~~~~~~~~~~~~~~~l~~GD~~~~---~~~~~--H~~~n~~~~~~~~~l~v 196 (198)
T 2bnm_A 149 GEIHMKWGDKENPKEALLPTGASMFV---EEHVP--HAFTAAKGTGSAKLIAV 196 (198)
T ss_dssp SCEEEEESCTTSCEEEEECTTCEEEE---CTTCC--EEEEESTTSCCEEEEEE
T ss_pred eeEEEEECCcCCcccEEECCCCEEEe---CCCCc--eEEEecCCCCCeEEEEE
Confidence 5555555551 4567999998632 12333 334444 45666554
No 99
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=26.46 E-value=1.2e+02 Score=18.62 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=28.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhH
Q psy8133 51 CFQTIMMRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISDV 91 (99)
Q Consensus 51 ~f~~~l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~ 91 (99)
.....+.+.....-....++.++++.|..++.++...|...
T Consensus 33 ~~~~~~~~~a~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~ 73 (240)
T 3oll_A 33 SMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLES 73 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHH
Confidence 33344444445555667889999999999999987766543
No 100
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=25.95 E-value=34 Score=18.41 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=12.7
Q ss_pred CeEEEEECCeEE-eeeCCCCee
Q psy8133 1 GRVEVSRENKYL-STLAPGKVF 21 (99)
Q Consensus 1 G~v~v~~~~~~v-~~l~~G~~f 21 (99)
|++.+..+++.. ..+++||++
T Consensus 62 G~~~l~~~~~~~~~~l~~Gd~i 83 (112)
T 2opk_A 62 GSAGIECEGDTAPRVMRPGDWL 83 (112)
T ss_dssp SCEEEEETTCSSCEEECTTEEE
T ss_pred CeEEEEECCEEEEEEECCCCEE
Confidence 455555555431 568888876
No 101
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=25.93 E-value=83 Score=16.77 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=20.7
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEE
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLW 45 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~ 45 (99)
|++.+..+++ ...+++||.+= .......++.+.+++.++
T Consensus 65 G~~~~~i~~~-~~~l~~Gd~i~-----ip~~~~H~~~~~~~~~~~ 103 (114)
T 3fjs_A 65 GEVEIGVDGA-QRRLHQGDLLY-----LGAGAAHDVNAITNTSLL 103 (114)
T ss_dssp SCEEEEETTE-EEEECTTEEEE-----ECTTCCEEEEESSSEEEE
T ss_pred CEEEEEECCE-EEEECCCCEEE-----ECCCCcEEEEeCCCcEEE
Confidence 4455555554 45688887752 122224455666665543
No 102
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=25.83 E-value=1.2e+02 Score=18.65 Aligned_cols=41 Identities=12% Similarity=0.230 Sum_probs=28.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhH
Q psy8133 51 CFQTIMMRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISDV 91 (99)
Q Consensus 51 ~f~~~l~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~ 91 (99)
.....+.+...........+.++++.|..|+.++...|...
T Consensus 36 ~~~~~~~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~ 76 (243)
T 3ltx_A 36 HLLNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHLIEC 76 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHH
Confidence 33334444444555566789999999999999987766543
No 103
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=25.62 E-value=84 Score=16.73 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=10.8
Q ss_pred CeEEEEECCeEEeeeCCCCee
Q psy8133 1 GRVEVSRENKYLSTLAPGKVF 21 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~f 21 (99)
|++.+..++.....+++||++
T Consensus 69 G~~~~~~~~~~~~~l~~Gd~~ 89 (125)
T 3h8u_A 69 GEAEYHQGNGIVTHLKAGDIA 89 (125)
T ss_dssp CEEEEECSTTCEEEEETTEEE
T ss_pred eEEEEEECCCeEEEeCCCCEE
Confidence 444444412233457788764
No 104
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=24.06 E-value=52 Score=17.39 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=11.6
Q ss_pred CeEEEEECCeEEeeeCCCCee
Q psy8133 1 GRVEVSRENKYLSTLAPGKVF 21 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~f 21 (99)
|++.+..+++....+++||.+
T Consensus 56 G~~~~~i~~~~~~~l~~Gd~i 76 (117)
T 2b8m_A 56 GEMTLTLEDQEPHNYKEGNIV 76 (117)
T ss_dssp SEEEEEETTSCCEEEETTCEE
T ss_pred CEEEEEECCEEEEEeCCCCEE
Confidence 444444444433367887765
No 105
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=23.78 E-value=1.4e+02 Score=18.57 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=22.6
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEE
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAI 47 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i 47 (99)
|++.+..+++ ...+++||++-- -.+.+..+.-...+++.++.+
T Consensus 90 G~l~~~~~~~-~~~L~~Gd~~~~---~~~~~H~~~N~~~~~~~~l~v 132 (261)
T 1rc6_A 90 GNITAKAEGK-TFALSEGGYLYC---PPGSLMTFVNAQAEDSQIFLY 132 (261)
T ss_dssp SEEEEEETTE-EEEEETTEEEEE---CTTCCCEEEECSSSCEEEEEE
T ss_pred eEEEEEECCE-EEEECCCCEEEE---CCCCCEEEEeCCCCCEEEEEE
Confidence 5666666654 457999988642 223333333222344555544
No 106
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=22.76 E-value=1.4e+02 Score=18.45 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=25.6
Q ss_pred HhhhHHHHHHHHHHhhcCCCCCCCCHHHHHHHHhH
Q psy8133 57 MRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISDV 91 (99)
Q Consensus 57 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~ 91 (99)
.+...........+.++++.|..|+.++...|...
T Consensus 71 ~~~~~~~l~~~VewAK~lP~F~~L~~~DQ~~LLk~ 105 (245)
T 3n00_A 71 SMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKA 105 (245)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHH
Confidence 33444445566789999999999999987766543
No 107
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=22.74 E-value=95 Score=17.43 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=20.5
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEE
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAI 47 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i 47 (99)
|++.+..+++....+++||.+= +-.+.+........+++.++.+
T Consensus 77 G~~~~~~~~~~~~~l~~Gd~i~---ip~~~~H~~~n~~~~~~~~l~v 120 (147)
T 2f4p_A 77 GKGFYQERGKPARILKKGDVVE---IPPNVVHWHGAAPDEELVHIGI 120 (147)
T ss_dssp EEEEEEETTSCCEEEETTCEEE---ECTTCCEEEEEBTTBCEEEEEE
T ss_pred CEEEEEECCEEEEEECCCCEEE---ECCCCcEEeEeCCCCCEEEEEE
Confidence 3444444444335678887763 2223343333333344555444
No 108
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=22.21 E-value=87 Score=15.72 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=20.6
Q ss_pred CeEEEEECCeEEeeeCCCCeeeehhhhcCCcceeEEEEccceEEEEEC
Q psy8133 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIE 48 (99)
Q Consensus 1 G~v~v~~~~~~v~~l~~G~~fGe~~l~~~~~~~~~~~a~~~~~~~~i~ 48 (99)
|++.+..+++ ...+++||.+= +-.+.+. ++.+.+++.++.++
T Consensus 59 G~~~~~~~~~-~~~l~~Gd~~~---ip~~~~H--~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 59 GTLQIAFRDQ-NITLQAGEMYV---IPKGVEH--KPMAKEECKIMIIE 100 (102)
T ss_dssp SEEEEECSSC-EEEEETTEEEE---ECTTCCB--EEEEEEEEEEEEEE
T ss_pred CEEEEEECCE-EEEEcCCCEEE---ECCCCeE--eeEcCCCCEEEEEE
Confidence 3444443443 34577877641 1123333 33444677777664
No 109
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.58 E-value=56 Score=13.30 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=9.5
Q ss_pred CCHHHHHHHHhHhhh
Q psy8133 80 LPEETLIKISDVLEE 94 (99)
Q Consensus 80 l~~~~~~~l~~~~~~ 94 (99)
++++|+..+.+++..
T Consensus 9 fdekqieelldncie 23 (31)
T 4h62_V 9 FDEKQIEELLDNCIE 23 (31)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 456677777776654
No 110
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=20.59 E-value=1.5e+02 Score=17.91 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHHhH
Q psy8133 61 LIRQAEYNDFLKSVPIFKDLPEETLIKISDV 91 (99)
Q Consensus 61 ~~~~~~~~~~l~~~~~~~~l~~~~~~~l~~~ 91 (99)
.........+.++++.|..++.++...|...
T Consensus 52 ~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~ 82 (232)
T 1osh_A 52 TNHVQVLVEFTKKLPGFQTLDHEDQIALLKG 82 (232)
T ss_dssp HHHHHHHHHHHHTSTTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchhhCCHHHHHHHHHH
Confidence 3445556788999999999999987666543
Done!