RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8133
(99 letters)
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase;
HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Length = 139
Score = 109 bits (274), Expect = 1e-32
Identities = 47/67 (70%), Positives = 55/67 (82%)
Query: 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTG 60
G+VEV++E L T+ PGKVFGELAILYNC RTAT+K + KLWAI+RQCFQTIMMRTG
Sbjct: 73 GKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTG 132
Query: 61 LIRQAEY 67
LI+ EY
Sbjct: 133 LIKHTEY 139
Score = 30.4 bits (69), Expect = 0.054
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 61 LIRQAEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
LI++A + K+L + +I D +
Sbjct: 20 LIKEA-----ILDNDFMKNLELSQIQEIVDCMYP 48
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains,
cyclic nucleotide protein transferase, PKG; HET: CMP;
2.50A {Bos taurus}
Length = 299
Score = 111 bits (278), Expect = 2e-31
Identities = 65/94 (69%), Positives = 77/94 (81%)
Query: 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTG 60
G+VEV++E L T+ PGKVFGELAILYNC RTAT+K + KLWAI+RQCFQTIMMRTG
Sbjct: 89 GKVEVTKEGVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTG 148
Query: 61 LIRQAEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
LI+ EY +FLKSVP F+ LPEE L K++DVLEE
Sbjct: 149 LIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEE 182
Score = 69.6 bits (170), Expect = 6e-16
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 1 GRVEVSRENK------YLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQT 54
G+V V+RE+ +L TL G FGE A+ RTA + AA I+R F+
Sbjct: 207 GKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKH 266
Query: 55 IMMRTGLIRQAEYND------FLKSVPIFKDL 80
++ + Y D + F +L
Sbjct: 267 LIGGLDDVSNKAYEDAEAKAKYEAEAAFFANL 298
Score = 29.5 bits (66), Expect = 0.15
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
+ + K+L + +I D +
Sbjct: 39 EAILDNDFMKNLELSQIQEIVDCMYP 64
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide
binding domain, evolution, PKA signaling, transfer; HET:
CMP; 2.21A {Saccharomyces cerevisiae}
Length = 246
Score = 109 bits (273), Expect = 3e-31
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTG 60
G V+ + +++ PG FGELA++YN R AT+ A SDC LWA++R F+ I++ +
Sbjct: 57 GTVDFYVNDNKVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSS 116
Query: 61 LIRQAEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
++ Y+D LKS+P+ K L K++D L+
Sbjct: 117 FKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDT 150
Score = 68.3 bits (167), Expect = 1e-15
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1 GRVEVSREN-KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIM 56
G V+VS++ ++ L FGE+A+L + R AT+ A K+ + + FQ ++
Sbjct: 175 GAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLL 231
Score = 29.4 bits (66), Expect = 0.13
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
+++ +F L ++ + + LEE
Sbjct: 7 KSIRNNFLFNKLDSDSKRLVINCLEE 32
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit;
beta-barrel, CAMP-binding, catalytic subunit,
transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B*
3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Length = 154
Score = 102 bits (255), Expect = 1e-29
Identities = 24/67 (35%), Positives = 43/67 (64%)
Query: 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTG 60
G ++V N++ +++ G FGELA++Y R AT+KA ++ KLW I+R ++ I+M +
Sbjct: 88 GEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGST 147
Query: 61 LIRQAEY 67
L ++ Y
Sbjct: 148 LRKRKMY 154
Score = 34.6 bits (80), Expect = 0.001
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 31 KRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISD 90
+R I A + + ++ A ++ +F L + I D
Sbjct: 3 RRRGAISAEV---YTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFD 59
Query: 91 VLEE 94
+
Sbjct: 60 AMFP 63
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB
tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A
{Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Length = 416
Score = 105 bits (264), Expect = 7e-29
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 3 VEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLI 62
V+ + + FGELA++YN + ATI A S LW ++R F+ I+++
Sbjct: 201 VKCDGVGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAK 260
Query: 63 RQAEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
++ Y F++S+P K L +K+ DV+
Sbjct: 261 KRKMYESFIESLPFLKSLEVSERLKVVDVIGT 292
Score = 62.1 bits (150), Expect = 5e-13
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 1 GRVEVSRENK-----------YLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIER 49
G V+++ + K ++ G+ FGELA++ N R A+ A K A++
Sbjct: 317 GEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDV 376
Query: 50 QCFQTIMMRTGLIRQAEYNDFLKSVP 75
Q F+ ++ I + + + +
Sbjct: 377 QAFERLLGPCMEIMKRNIATYEEQLV 402
Score = 33.6 bits (76), Expect = 0.005
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 26 ILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSVPIFKDLPEETL 85
++ R A++ A + E I+ ++ + K + +FK+L E +
Sbjct: 103 VINRFTRRASVCAEA-YNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQM 161
Query: 86 IKISDVLEE 94
++ D + E
Sbjct: 162 SQVLDAMFE 170
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit,
CAMP-dependent protein kinase catalytic subunit A;
isoform diversity; HET: TPO SEP ATP; 3.70A {Homo
sapiens}
Length = 381
Score = 104 bits (261), Expect = 1e-28
Identities = 33/94 (35%), Positives = 57/94 (60%)
Query: 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTG 60
G V+V ++++ ++ G FGELA++Y R AT+KA +D KLW I+R ++ I+M +
Sbjct: 180 GEVDVYVNGEWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGST 239
Query: 61 LIRQAEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
L ++ Y +FL V I + L + + ++D LE
Sbjct: 240 LRKRKMYEEFLSKVSILESLEKWERLTVADALEP 273
Score = 65.1 bits (158), Expect = 4e-14
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 1 GRVEVSR------ENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQT 54
G V + E + L P FGE+A+L N R AT+ A K ++R F+
Sbjct: 298 GTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFER 357
Query: 55 IMMRTGLIRQ---AEYNDFL 71
++ I + YN F+
Sbjct: 358 VLGPCSEILKRNIQRYNSFI 377
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit,
CAMP-dependent protein kinase, alpha-catalytic SU;
cyclic adenosine monophosphate; HET: SEP TPO ANP TAM;
2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Length = 291
Score = 103 bits (257), Expect = 2e-28
Identities = 32/94 (34%), Positives = 57/94 (60%)
Query: 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTG 60
G ++V N++ +++ G FGELA++Y R AT+KA ++ KLW I+R ++ I+M +
Sbjct: 89 GEMDVYVNNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGST 148
Query: 61 LIRQAEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
L ++ Y +FL V I + L + + ++D LE
Sbjct: 149 LRKRKMYEEFLSKVSILESLDKWERLTVADALEP 182
Score = 66.6 bits (162), Expect = 9e-15
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 1 GRVEVSR------ENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQT 54
G V + E + L P FGE+A+L N + AT+ A K ++R F+
Sbjct: 207 GSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFER 266
Query: 55 IMMRTGLIRQ---AEYNDFLK 72
++ I + +YN F+
Sbjct: 267 VLGPCSDILKRNIQQYNSFVS 287
Score = 32.7 bits (74), Expect = 0.011
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 31 KRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISD 90
+R I A + + ++ A ++ +F L + I D
Sbjct: 4 RRRGAISAEV---YTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFD 60
Query: 91 VLEE 94
+
Sbjct: 61 AMFP 64
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit,
CAMP-dependent protein kinase catalytic subunit alpha;
PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus
norvegicus} PDB: 3idc_B*
Length = 161
Score = 98.6 bits (246), Expect = 5e-28
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 1 GRVEVSREN----KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIM 56
G ++ + + + FGELA++YN R ATI A S LW ++R F+ I+
Sbjct: 88 GTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 147
Query: 57 MRTGLIRQAEYNDF 70
++ ++ Y F
Sbjct: 148 VKNNAKKRKMYESF 161
Score = 37.0 bits (86), Expect = 2e-04
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 32 RTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISDV 91
R A++ A + E I+ ++ + K + +FK+L E + ++ D
Sbjct: 2 RRASVCAEA-YNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDA 60
Query: 92 LEE 94
+ E
Sbjct: 61 MFE 63
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ
domain containing guanine nucleotide exchange factor 2,
PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Length = 134
Score = 75.5 bits (186), Expect = 2e-19
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASD-CKLWAIERQCFQTIMMR 58
G VE+S + + L G FG L ++ D C+ I +Q + I+
Sbjct: 67 GTVEISHPDGKVENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNH 125
Score = 34.7 bits (80), Expect = 0.001
Identities = 4/26 (15%), Positives = 12/26 (46%)
Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
+F+ +P F ++ ++ V+
Sbjct: 16 EFMHQLPAFANMTMSVRRELCSVMIF 41
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2,
CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus
musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Length = 469
Score = 79.2 bits (194), Expect = 5e-19
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 1 GRVEVS-RENKYLSTLAPGKVFGELAILYNCKRTATIKAASD-CKLWAIERQCFQTIMMR 58
G V V + TL G FG+LA++ + R A+I D C ++++ F I+
Sbjct: 388 GSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRD 447
Query: 59 TGLIRQAEYND-----FLKSVP 75
L+ VP
Sbjct: 448 VEANTVRLKEHDQDVLVLEKVP 469
Score = 55.3 bits (132), Expect = 1e-10
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 1 GRVEVSR-------ENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQ 53
G ++V + + TL G FGE +IL N R ATI +L IE++ F+
Sbjct: 92 GSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFK 150
Query: 54 TIMMR 58
+ +
Sbjct: 151 ALWEK 155
Score = 35.3 bits (80), Expect = 0.001
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
LK V F+ L +I
Sbjct: 42 TRLKGVKAFEKFHPNLLRQICLCGYY 67
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG
potassium channel; dimer helical bundle beta barrel core
with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium
loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A*
1u12_A 3co2_A
Length = 138
Score = 63.9 bits (156), Expect = 1e-14
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTG 60
G V V+ N L PG FGE+A++ R+AT+ AA+ L ++ FQ + +
Sbjct: 61 GSVSVATPNP--VELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSP 118
Query: 61 LIRQA 65
I +
Sbjct: 119 EIAEI 123
Score = 37.7 bits (88), Expect = 1e-04
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 56 MMRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
+ R +R + + +VP+F+ L L++I L
Sbjct: 1 VRRGDFVRNWQ---LVAAVPLFQKLGPAVLVEIVRALRA 36
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide
binding protein, structural genomics; HET: MSE CMP;
1.79A {Methylobacillus flagellatus KT}
Length = 187
Score = 60.1 bits (146), Expect = 7e-13
Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTI 55
G V V ++ + ++ + G + GE++++ R+A+ A+ + R +
Sbjct: 89 GEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQL 148
Query: 56 MMR 58
+
Sbjct: 149 LAN 151
Score = 37.0 bits (86), Expect = 3e-04
Identities = 4/47 (8%), Positives = 15/47 (31%)
Query: 48 ERQCFQTIMMRTGLIRQAEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
+ + + E + + + +F D E + + ++
Sbjct: 18 QGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQC 64
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic
nucleotide-gated channel 2; CNBD, C-linker, pacemaker,
HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A
{Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A*
3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Length = 202
Score = 59.6 bits (145), Expect = 1e-12
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIM 56
G V V + L+ G FGE+ +L +RTA+++A + C+L+++ F ++
Sbjct: 122 GVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVL 177
Score = 29.2 bits (66), Expect = 0.17
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 62 IRQAEYNDFLKSVPIFKDLPEETLIKISDVLEESL 96
I + S+P+F + + + L+ +
Sbjct: 65 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEV 99
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural
genomics, joint center for structural genomics; HET:
MSE; 1.90A {Geobacter metallireducens}
Length = 142
Score = 56.9 bits (138), Expect = 5e-12
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 1 GRVEVSRE--------NKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCF 52
G VE+ N + ++ PG +FG +++ T++ +A ++ I
Sbjct: 56 GGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARL 115
Query: 53 QTIMMR 58
+ +
Sbjct: 116 REMSEN 121
Score = 32.3 bits (74), Expect = 0.011
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
+ L+ F L +E L I+ + EE
Sbjct: 6 ERLRVYRFFASLTDEQLKDIALISEE 31
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable
regulatory domain of potassium channel, membrane PR
transport protein; 2.20A {Mus musculus}
Length = 160
Score = 55.8 bits (135), Expect = 2e-11
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 1 GRVEVSRENKYLSTLAPGKVFGELAILY--NCKRTATIKAASDCKLWAIERQCFQTIM 56
G +EV ++++ ++ L G VFG++ + A ++A + C L I+R Q ++
Sbjct: 77 GSLEVIQDDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVL 134
Score = 28.8 bits (65), Expect = 0.16
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 62 IRQAEYNDFLKSVPIFKDLPEETLIKISDVLEESL 96
I K P F+ + L ++ +
Sbjct: 20 ICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVH 54
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic
nucleotide binding domain, C-linker, CAM SPHCN1, HCN;
HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Length = 198
Score = 56.1 bits (136), Expect = 2e-11
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 1 GRVEV-SRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIM 56
G V++ + ++L+ G FGE+ +L +R A++K + C L+++ Q F ++
Sbjct: 121 GIVDIIMSDGVIATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVL 177
Score = 28.8 bits (65), Expect = 0.19
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 62 IRQAEYNDFLKSVPIFKDLPEETLIKISDVLEESL 96
+ D + SVP F + ++ +LE +
Sbjct: 64 VANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEV 98
>3ukn_A Novel protein similar to vertebrate potassium VOL channel,
subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD,
CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB:
3ukt_B 3ukv_B
Length = 212
Score = 55.8 bits (135), Expect = 4e-11
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 1 GRVEVSRENKYLSTLAPGKVFGELAILYNC--KRTATIKAASDCKLWAIERQCFQTIM 56
G +EV ++N L+ L G + G ++ K A +KA + C L I + + ++
Sbjct: 125 GSMEVLKDNTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLREVL 182
Score = 24.6 bits (54), Expect = 5.4
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 68 NDFLKSVPIFKDLPEETLIKISDVLEESL 96
N L +P+F+ L +S +++ S
Sbjct: 74 NKELLQLPLFESASRGCLRSLSLIIKTSF 102
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces
coelicolor structural genomics, PSI-2, protein structure
initiative; 2.00A {Streptomyces coelicolor A3}
Length = 149
Score = 54.2 bits (131), Expect = 6e-11
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTI 55
G+V++ R + L+ + P ++ GEL++ RTAT A ++ KL A+ Q
Sbjct: 55 GKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPW 114
Query: 56 MMR 58
+
Sbjct: 115 LNV 117
Score = 33.8 bits (78), Expect = 0.003
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 65 AEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
+D L+ P+F L +E ++ + E
Sbjct: 1 GHMDDVLRRNPLFAALDDEQSAELRASMSE 30
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling;
HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB:
4avb_A* 4avc_A*
Length = 333
Score = 51.6 bits (123), Expect = 2e-09
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 1 GRVEVSREN----KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIM 56
G EVS ++ PG + GE+A+L + R+AT+ W R F T++
Sbjct: 63 GSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMV 122
Query: 57 MR 58
Sbjct: 123 HI 124
Score = 37.7 bits (87), Expect = 2e-04
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 64 QAEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
+ L + +F+ P E L+ ++ ++
Sbjct: 8 TGARVEDLAGMDVFQGCPAEGLVSLAASVQP 38
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 51.0 bits (122), Expect = 3e-09
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 1 GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMR 58
G V V+ N L PG FGE+A++ R+AT+ AA+ L ++ FQ +
Sbjct: 278 GSVSVATPNP--VELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSS 333
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide
monophosphate, CNMP, CNMP-binding, structural genomics;
NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Length = 137
Score = 48.3 bits (115), Expect = 9e-09
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 15/71 (21%)
Query: 1 GRVEVSREN------KYLSTLAPGKVFGELAILYNC---------KRTATIKAASDCKLW 45
GR+E + S L G G+ + + T T+KA ++ + +
Sbjct: 56 GRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAF 115
Query: 46 AIERQCFQTIM 56
A+ + +
Sbjct: 116 ALIADELKFVA 126
Score = 34.4 bits (79), Expect = 0.002
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 69 DFLKSVPIFKDLPEETLIKISDVLEESL 96
++ VP+F+++ E L I + L+ L
Sbjct: 6 SGVRRVPLFENMDERLLDAICERLKPCL 33
>2z69_A DNR protein; beta barrel, dimerization helix, transcription
regulator; 2.10A {Pseudomonas aeruginosa}
Length = 154
Score = 47.7 bits (114), Expect = 2e-08
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYN-CKRTATIKAASDCKLWAIERQCFQT 54
G V++ R K L F E + + AT +A +L+ + +
Sbjct: 62 GCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLR 121
Query: 55 IMMR 58
+
Sbjct: 122 QLQD 125
Score = 31.5 bits (72), Expect = 0.019
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 64 QAEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
Q + L+S +F+ L L ++ +
Sbjct: 7 QRVHQQLLQSHHLFEPLSPVQLQELLASSDL 37
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged
helix-turn-helix motif, DNA binding, transcription
activator; HET: CMP; 2.40A {Thermus thermophilus}
Length = 216
Score = 47.2 bits (113), Expect = 6e-08
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTI 55
G+V + R + + L+ L PG++FGE+++L +R+A+ A D +L A+ R+ + +
Sbjct: 49 GKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLAL 108
Query: 56 MMR 58
+ R
Sbjct: 109 IRR 111
Score = 26.8 bits (60), Expect = 1.2
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 71 LKSVPIFKDLPEETLIKISDVLEE 94
+K P+F L E + +
Sbjct: 1 MKGSPLFHGLAPEEVDLALSYFQR 24
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP),
dimer, inactive(APO, unliganded allostery, DNA binding,
cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB:
3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Length = 227
Score = 46.5 bits (111), Expect = 1e-07
Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTI 55
G+V++ R L+ + P +FGEL+I RT++ ++ + +++R ++
Sbjct: 56 GKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSW 115
Query: 56 MMR 58
+
Sbjct: 116 IAD 118
Score = 28.0 bits (63), Expect = 0.38
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 65 AEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
+ ++ L IF+ + + ++ L+
Sbjct: 2 SHMDEILARAGIFQGVEPSAIAALTKQLQP 31
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Length = 231
Score = 45.7 bits (109), Expect = 2e-07
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTI 55
G V VSR + + L + V GE A+L + +R+A+++A + + + R+ F+ I
Sbjct: 56 GVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELI 115
Query: 56 MMR 58
+ R
Sbjct: 116 LRR 118
Score = 29.2 bits (66), Expect = 0.18
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
D LK P+F+++PE+ + + V+ E
Sbjct: 6 DDLKRSPLFQNVPEDAMREALKVVTE 31
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding,
DNA-binding nucleotide-binding, transcription,
transcription regulation; HET: CMP; 1.66A {Escherichia
coli}
Length = 260
Score = 45.1 bits (107), Expect = 4e-07
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCK-RTATIKAASDCKLWAIERQCFQT 54
G V V ++ LS L G GEL + + R+A ++A + C++ I + F+
Sbjct: 96 GSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQ 155
Query: 55 IMMR 58
++
Sbjct: 156 LIQV 159
Score = 26.6 bits (59), Expect = 1.5
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
+ S+ + K + TL
Sbjct: 46 ADIGSMVLGKPQTDPTLEWFLSHCHI 71
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery,
DNA binding cyclic A transcription regulator; HET: CMP;
1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A*
3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A*
1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A*
3rdi_A* 3rou_A* 3rpq_A* ...
Length = 210
Score = 43.8 bits (104), Expect = 1e-06
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCK-RTATIKAASDCKLWAIERQCFQT 54
G V V ++ LS L G GEL + + R+A ++A + C++ I + F+
Sbjct: 46 GSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQ 105
Query: 55 IMMR 58
++
Sbjct: 106 LIQV 109
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP
regulatory protein, structural genomi 2, protein
structure initiative; 2.20A {Ruegeria pomeroyi} PDB:
3h3z_A*
Length = 237
Score = 42.7 bits (101), Expect = 2e-06
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTI 55
G V++ R +S G+ FGE L N + +A + C++ I F ++
Sbjct: 61 GWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSL 120
Query: 56 MMR 58
M R
Sbjct: 121 MRR 123
Score = 26.9 bits (60), Expect = 1.1
Identities = 3/27 (11%), Positives = 10/27 (37%)
Query: 68 NDFLKSVPIFKDLPEETLIKISDVLEE 94
++ + + LPE+ + +
Sbjct: 10 KAIARNSLLIRSLPEQHVDALLSQAVW 36
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary
phase, DNA-binding, transcription regulation; 1.50A
{Thermus thermophilus}
Length = 202
Score = 41.1 bits (97), Expect = 8e-06
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 1 GRVEVSRENKY-----LSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTI 55
G V + ++ L + PG FGE A+ +R +AA+D +L + +
Sbjct: 34 GLVRLEAVDEEGNALTLRLVRPGGFFGEEALF-GQERIYFAEAATDVRLEPLPENPDPEL 92
Query: 56 MMR 58
+
Sbjct: 93 LKD 95
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics,
porphyromona gingivalis, PSI, protein structure
initiative; 1.90A {Porphyromonas gingivalis} SCOP:
a.4.5.4 b.82.3.2
Length = 232
Score = 41.1 bits (97), Expect = 9e-06
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTI 55
G++++ RE + PG+ FG ++T A + K+ AI + + +
Sbjct: 60 GKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEAL 119
Query: 56 MMR 58
+
Sbjct: 120 LKG 122
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription,
transcription regulation; HET: BOG; 1.90A {Anabaena}
PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Length = 243
Score = 41.2 bits (97), Expect = 1e-05
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYN--CKRTATIKAASDCKLWAIERQCFQ 53
G V++SR ++ L VFG L++L R A + +L + + +
Sbjct: 70 GAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVE 129
Query: 54 TIMMR 58
+
Sbjct: 130 QALKE 134
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 41.0 bits (95), Expect = 2e-05
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 1 GRVEV-------SRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQ 53
G ++V ++ + TL G FGE +IL N R ATI +L IE++ F+
Sbjct: 92 GSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFK 150
Query: 54 TIMMR 58
+ +
Sbjct: 151 ALWEK 155
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural
genomics, joint center for structura genomics, JCSG;
2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4
b.82.3.2
Length = 232
Score = 40.3 bits (95), Expect = 2e-05
Identities = 4/64 (6%), Positives = 18/64 (28%), Gaps = 6/64 (9%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCKR-TATIKAASDCKLWAIERQCFQT 54
G + + + + + ++ ++ A ++ I + +
Sbjct: 70 GEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLS 129
Query: 55 IMMR 58
+ R
Sbjct: 130 DLFR 133
Score = 28.8 bits (65), Expect = 0.25
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 66 EYNDFLKSVPIFKDLPEETLIKISDVL 92
D L +P+F+ L E I D +
Sbjct: 15 TMFDTLLQLPLFQGLCHEDFTSILDKV 41
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix,
transcription factor, CAMP-B proteins, CAMP receptor
protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP:
a.4.5.4 b.82.3.2
Length = 207
Score = 40.3 bits (95), Expect = 2e-05
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 1 GRVEVSRENKY-----LSTLAPGKVFGELAIL----YNCKRTATIKAASDCKLWAIERQC 51
G V + E+ + L G FGEL + +R+A ++A +C++ I
Sbjct: 40 GSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAK 99
Query: 52 FQTIMMR 58
F+ + +
Sbjct: 100 FRELSQQ 106
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration;
HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP:
a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A*
3e5q_A 2h6b_A* 2h6c_A
Length = 250
Score = 40.4 bits (95), Expect = 2e-05
Identities = 7/63 (11%), Positives = 17/63 (26%), Gaps = 8/63 (12%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTI 55
G++++ K L + G+L A + + +T+
Sbjct: 59 GKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPT---GNNIYATAMEPTRTCWFSEKSLRTV 115
Query: 56 MMR 58
Sbjct: 116 FRT 118
Score = 25.0 bits (55), Expect = 4.8
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 68 NDFLKSVPIFKDLPEETLIKISDV 91
DF ++ P E L + +
Sbjct: 8 KDFCGAIIPDNFFPIEKLRNYTQM 31
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity,
CRP, CLP, C-DI-GMP receptor, quorum SENS binding,
transcription; 2.30A {Xanthomonas campestris PV}
Length = 230
Score = 40.0 bits (94), Expect = 2e-05
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILY-NCKRTATIKAASDCKLWAIERQCFQT 54
G V + E L G+ GE+ + + R ++ + C+L I + Q
Sbjct: 61 GSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEISYERLQQ 120
Query: 55 IMMR 58
+
Sbjct: 121 LFQT 124
Score = 25.7 bits (57), Expect = 2.2
Identities = 2/27 (7%), Positives = 7/27 (25%)
Query: 68 NDFLKSVPIFKDLPEETLIKISDVLEE 94
+++ L T+ +
Sbjct: 10 TTTVRNATPSLTLDAGTIERFLAHSHR 36
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix,
homodimer, transcription regulator; 3.60A {Pseudomonas
aeruginosa}
Length = 227
Score = 38.8 bits (91), Expect = 6e-05
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCKR-TATIKAASDCKLWAIERQCFQT 54
G V++ R K L F E + + AT +A +L+ + +
Sbjct: 59 GCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLR 118
Query: 55 IMMR 58
+
Sbjct: 119 QLQD 122
Score = 28.4 bits (64), Expect = 0.27
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 64 QAEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
Q + L+S +F+ L L ++ +
Sbjct: 4 QRVHQQLLQSHHLFEPLSPVQLQELLASSDL 34
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Length = 213
Score = 38.7 bits (91), Expect = 6e-05
Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCKR-TATIKAASDCKLWAIERQCFQT 54
G ++ + + + P ++ I + R + A + K+ +I ++ F
Sbjct: 49 GTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLD 108
Query: 55 IMMR 58
++M+
Sbjct: 109 LLMK 112
Score = 25.3 bits (56), Expect = 3.9
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 71 LKSVPIFKDLPEETLIKISDVLEE 94
+ S I L K+ +
Sbjct: 1 MGSDKIHHHHHHMDLKKLLPCGKV 24
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic
nucleotide-binding domain, structural genomics, joint
for structural genomics; 2.55A {Eubacterium rectale atcc
33656}
Length = 220
Score = 37.2 bits (87), Expect = 3e-04
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 1 GRVEVSREN-----KYLSTLAPG--KVFGELAILYNCKRTATIKAASDCKLWAIERQCFQ 53
G++ + L L + I+ + + TI+A D LW I + ++
Sbjct: 53 GQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYK 112
Query: 54 TIMMR 58
IM
Sbjct: 113 GIMKD 117
Score = 27.6 bits (62), Expect = 0.51
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 69 DFLKSVPIFKDLPEETLIKISDV 91
F P++ DL ISD
Sbjct: 3 SFENYFPLWNDLNTAQKKLISDN 25
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat
transcription; HET: PR3; 2.3A {Listeria monocytogenes}
SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Length = 238
Score = 37.0 bits (86), Expect = 3e-04
Identities = 5/65 (7%), Positives = 16/65 (24%), Gaps = 7/65 (10%)
Query: 1 GRVEVSREN-----KYLSTLAPGKVFGELAILYNCKRT--ATIKAASDCKLWAIERQCFQ 53
G +++ + L V I + + I+ +
Sbjct: 45 GITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELK 104
Query: 54 TIMMR 58
++ +
Sbjct: 105 ELLSK 109
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme
sensor, catabolite gene activator protein; HET: HEM;
2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Length = 222
Score = 36.5 bits (85), Expect = 4e-04
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 11/62 (17%)
Query: 1 GRVEVSREN----KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIM 56
GR+ V L L G +F + ++A ++ + + F+ +
Sbjct: 50 GRLRVYLVGEEREISLFYLTSGDMFCMHS-------GCLVEATERTEVRFADIRTFEQKL 102
Query: 57 MR 58
Sbjct: 103 QT 104
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken
structural genomics/proteomics in RSGI; 1.92A {Thermus
thermophilus} PDB: 2zdb_A
Length = 195
Score = 34.5 bits (80), Expect = 0.002
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 1 GRVEVSRENKY-----LSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQ 53
G V V L + PG FGE A L T +A ++ + +E +
Sbjct: 26 GLVRVVELLPDGRLITLRHVLPGDYFGEEA-LEGKAYRYTAEAMTEAVVQGLEPRAMD 82
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA
transcription regulator, DNA binding protein; HET: HEM;
2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Length = 220
Score = 33.4 bits (77), Expect = 0.006
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 1 GRVEVSREN----KYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIM 56
GRV V L+ L G +F A I+A D + + + FQ I+
Sbjct: 54 GRVRVYLAYEDKEFTLAILEAGDIFCTH-------TRAFIQAMEDTTILYTDIRNFQNIV 106
Query: 57 MR 58
+
Sbjct: 107 VE 108
Score = 25.7 bits (57), Expect = 2.3
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 71 LKSVPIFKDLPEETLIKISDVLEE 94
L + + L E + E
Sbjct: 6 LTDTNLLEVLNSEEYSGVLKEFRE 29
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.30
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 28/89 (31%)
Query: 20 VFG----------ELAILYNCKRT---ATIKAASDCKLWAIERQCFQTIMMRT-GL---- 61
+FG EL LY IK +++ L + R + T GL
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE-TLSELIRTTLDAEKVFTQGLNILE 217
Query: 62 -IRQAEY---NDFLKSVPIFKDLPEETLI 86
+ D+L S+PI P LI
Sbjct: 218 WLENPSNTPDKDYLLSIPI--SCP---LI 241
Score = 27.3 bits (60), Expect = 1.0
Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 69/137 (50%)
Query: 3 VEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLI 62
+++ N P L I + ++ I R+ + ++ T +
Sbjct: 1662 LDIVINN-------PV----NLTIHFGGEKGKRI------------RENYSAMIFETIV- 1697
Query: 63 RQAEYNDFLKSVPIFKDL-----------PEETL--------------IKISDVLEE--- 94
+ LK+ IFK++ + L + L+
Sbjct: 1698 -----DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL 1752
Query: 95 ----------SLG--SA 99
SLG +A
Sbjct: 1753 IPADATFAGHSLGEYAA 1769
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.52
Identities = 19/104 (18%), Positives = 29/104 (27%), Gaps = 17/104 (16%)
Query: 2 RVEVSRENKYLSTLAPGKVFGE-LAILYNCKRTATIKA-ASDCK-------------LWA 46
++ + L L K + L +L N + A CK L A
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 47 IERQCFQTIMMRTGLIRQAEYNDFLKSVPI-FKDLPEETLIKIS 89
L + LK + +DLP E L +
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-TTN 326
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 26.9 bits (60), Expect = 0.93
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 61 LIRQAEYNDFLKSVPIFKDLPEETLIKI 88
L+ QA F +V +DLP +I
Sbjct: 8 LLHQAR---FFTTVNHLRDLPPTVQPEI 32
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 26.4 bits (59), Expect = 1.5
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 62 IRQAEYNDFLKSVPIFKDLPEETLIKI 88
+ ++E + S + PE L +I
Sbjct: 3 VTKSE---IVISAVKPEQYPEGGLPEI 26
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 26.4 bits (59), Expect = 1.5
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 62 IRQAEYNDFLKSVPIFKDLPEETLIKI 88
IR E +K D P ++
Sbjct: 3 IRDVE---LVKVARTPGDYPPPLKGEV 26
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 26.4 bits (59), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 57 MRTGLIRQAEYNDFLKSVPIFKDLPEETLIKI 88
M +Q F+ S P + LP +T I++
Sbjct: 1 MTNLNYQQTH---FVMSAPDIRHLPSDTGIEV 29
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri,
dihydroorotate; alpha-beta barrel, TIM barrel,
oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium
falciparum} SCOP: c.1.4.1
Length = 443
Score = 24.7 bits (54), Expect = 6.6
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 23 ELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEYNDFLKSVPIF-K--- 78
L +T + + MM+ +N K +F K
Sbjct: 247 NLEKNNIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAP 306
Query: 79 DLPEETLIKISDVLEES 95
DL +E +I+DVL E+
Sbjct: 307 DLNQEQKKEIADVLLET 323
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN
binding domain, orotate complex, oxidoreductase; HET:
MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Length = 336
Score = 24.4 bits (54), Expect = 8.1
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 63 RQAEYNDFLKSVPIF-K---DLPEETLIKISDVLEES 95
+ K VPI K DL EE LI+++D L
Sbjct: 201 QNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRH 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.387
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,458,801
Number of extensions: 72087
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 99
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)