RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8133
         (99 letters)



>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 136

 Score = 54.0 bits (129), Expect = 3e-11
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query: 21  FGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEY 67
           FGELA++Y   R AT+KA ++ KLW I+R  ++ I+M + L ++  Y
Sbjct: 90  FGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 136


>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 136

 Score = 49.0 bits (116), Expect = 2e-09
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 17  PGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQAEY 67
               FGELA++YN  R ATI A S   LW ++R  F+ I+++    ++  Y
Sbjct: 86  NRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 136



 Score = 29.7 bits (66), Expect = 0.030
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
          +  K + +FK+L  E + ++ D + E
Sbjct: 16 EACKDILLFKNLDPEQMSQVLDAMFE 41


>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 132

 Score = 44.4 bits (104), Expect = 1e-07
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 15  LAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTGLIRQ---AEYNDFL 71
           L P   FGE+A+L N  R AT+ A    K   ++R  F+ ++     I +    +YN F+
Sbjct: 72  LGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNSFV 131



 Score = 35.9 bits (82), Expect = 1e-04
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
          +FL  V I + L +   + ++D LE 
Sbjct: 2  EFLSKVSILESLDKWERLTVADALEP 27


>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 147

 Score = 41.3 bits (96), Expect = 2e-06
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 11  YLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMR 58
            ++    G+ FGELA++ N  R A+  A    K  A++ Q F+ ++  
Sbjct: 73  EIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGP 120



 Score = 36.3 bits (83), Expect = 1e-04
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
           F++S+P  K L     +K+ DV+  
Sbjct: 2  SFIESLPFLKSLEVSERLKVVDVIGT 27


>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1
           and 3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 124

 Score = 35.1 bits (80), Expect = 3e-04
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 17  PGKVFGELAILYNCKRTATIKAASD-CKLWAIERQCFQTIM 56
            G  FG+LA++ +  R A+I    D C    ++++ F  I+
Sbjct: 78  EGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRIL 118



 Score = 31.3 bits (70), Expect = 0.007
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
          D L  +     L      +++ VL  
Sbjct: 10 DELLHIKALSHLSTTVKRELAGVLIF 35


>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 193

 Score = 35.4 bits (80), Expect = 4e-04
 Identities = 18/65 (27%), Positives = 36/65 (55%)

Query: 1   GRVEVSRENKYLSTLAPGKVFGELAILYNCKRTATIKAASDCKLWAIERQCFQTIMMRTG 60
           G V V  +      L+ G  FGE+ +L   +RTA+++A + C+L+++    F  ++    
Sbjct: 118 GVVSVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYP 177

Query: 61  LIRQA 65
           ++R+A
Sbjct: 178 MMRRA 182


>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium
          loti [TaxId: 381]}
          Length = 133

 Score = 34.0 bits (77), Expect = 8e-04
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
            + +VP+F+ L    L++I   L  
Sbjct: 11 QLVAAVPLFQKLGPAVLVEIVRALRA 36


>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion
          channel 6 {Thale cress (Arabidopsis thaliana) [TaxId:
          3702]}
          Length = 137

 Score = 33.4 bits (75), Expect = 0.001
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 68 NDFLKSVPIFKDLPEETLIKISDVLEE 94
          +  ++ VP+F+++ E  L  I + L+ 
Sbjct: 5  SSGVRRVPLFENMDERLLDAICERLKP 31


>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1
           and 3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 155

 Score = 31.7 bits (71), Expect = 0.006
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 26  ILYNCKRTATIKAASDCKLWAIERQCFQTIMMR 58
           IL N  R ATI      +L  IE++ F+ +  +
Sbjct: 105 ILDNTPRHATIVTRESSELLRIEQEDFKALWEK 137



 Score = 31.3 bits (70), Expect = 0.009
 Identities = 6/26 (23%), Positives = 8/26 (30%)

Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
            LK V  F+      L +I      
Sbjct: 24 TRLKGVKAFEKFHPNLLRQICLCGYY 49


>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator
          BT4300, N-terminal domain {Bacteroides thetaiotaomicron
          [TaxId: 818]}
          Length = 147

 Score = 30.3 bits (67), Expect = 0.019
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 69 DFLKSVPIFKDLPEETLIKISD 90
          D L  +P+F+ L  E    I D
Sbjct: 6  DTLLQLPLFQGLCHEDFTSILD 27


>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
          [TaxId: 562]}
          Length = 188

 Score = 26.3 bits (56), Expect = 0.59
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 70 FLKSVPIFKDLPEETLIKIS 89
          F+ S P  + LP +T I+++
Sbjct: 1  FVMSAPDIRHLPSDTGIEVA 20


>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
          (Heliothis virescens) [TaxId: 7102]}
          Length = 243

 Score = 24.2 bits (52), Expect = 2.9
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 69 DFLKSVPIFKDLPEETLIKI 88
          +F K +P F  + +   I +
Sbjct: 66 EFAKGLPGFAKISQSDQITL 85


>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 264

 Score = 23.8 bits (51), Expect = 5.2
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 6  SRENKYLSTLAPGKVF 21
          ++  +Y  +L PG  F
Sbjct: 15 AKGRRYTMSLTPGAEF 30


>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 266

 Score = 23.5 bits (50), Expect = 6.3
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 6  SRENKYLSTLAPGKVF 21
            E+++L  L   K  
Sbjct: 22 EDESEFLVDLEKDKKL 37


>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 231

 Score = 23.4 bits (50), Expect = 6.6
 Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 3/22 (13%)

Query: 69 DFLKSVPIFKDLPEE---TLIK 87
          +F K +P F+ L  E    L+K
Sbjct: 60 EFTKKLPGFQTLDHEDQIALLK 81


>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 236

 Score = 23.1 bits (49), Expect = 7.9
 Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 3/22 (13%)

Query: 69 DFLKSVPIFKDLPEE---TLIK 87
          +F K +P F  L      TL+K
Sbjct: 62 EFAKRLPGFTGLSIADQITLLK 83


>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK
          {Desulfitobacterium hafniense [TaxId: 49338]}
          Length = 139

 Score = 23.1 bits (48), Expect = 8.4
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 69 DFLKSVPIFKDLPEETLIKISDVLEE 94
          DF  ++      P E L   + +   
Sbjct: 1  DFCGAIIPDNFFPIEKLRNYTQMGLI 26


>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
          [TaxId: 1423]}
          Length = 195

 Score = 22.8 bits (47), Expect = 9.4
 Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 3/27 (11%)

Query: 62 IRQAEYNDFLKSVPIFKDLPEETLIKI 88
          + ++E    + S    +  PE  L +I
Sbjct: 3  VTKSE---IVISAVKPEQYPEGGLPEI 26


>d1n8ia_ c.1.13.1 (A:) Malate synthase G {Mycobacterium tuberculosis
           [TaxId: 1773]}
          Length = 726

 Score = 23.0 bits (49), Expect = 9.7
 Identities = 9/33 (27%), Positives = 12/33 (36%)

Query: 62  IRQAEYNDFLKSVPIFKDLPEETLIKISDVLEE 94
           I    Y  FL  +      P++  I  S V  E
Sbjct: 75  IDMDAYRQFLTEIGYLLPEPDDFTITTSGVDAE 107


>d2olua1 d.2.1.10 (A:68-292) Penicillin-binding protein 2, PBP2
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 225

 Score = 22.8 bits (48), Expect = 9.9
 Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 1/29 (3%)

Query: 56  MMRTGLIRQAEYNDFLKSVPIFKDLPEET 84
           M     I   ++ D  K + +  +L   T
Sbjct: 190 MHYHKRITDKQWED-AKKIDLKANLVNRT 217


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,823
Number of extensions: 13837
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 34
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)