Query psy8135
Match_columns 295
No_of_seqs 126 out of 736
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 19:28:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02854 MIF4G: MIF4G domain; 100.0 5.2E-32 1.1E-36 232.9 21.7 204 26-247 2-209 (209)
2 KOG0401|consensus 100.0 1.3E-32 2.9E-37 282.2 11.8 262 3-274 322-599 (970)
3 smart00543 MIF4G Middle domain 100.0 2.3E-28 5E-33 209.6 23.5 197 26-247 2-200 (200)
4 KOG2140|consensus 99.9 7.1E-24 1.5E-28 197.7 13.5 232 2-276 133-373 (739)
5 KOG2141|consensus 99.9 6.7E-23 1.5E-27 197.0 20.0 233 1-266 295-536 (822)
6 KOG3942|consensus 99.3 9.4E-11 2E-15 103.9 13.7 170 54-253 163-338 (348)
7 KOG2051|consensus 99.1 2.3E-09 4.9E-14 108.2 17.0 192 19-244 418-614 (1128)
8 KOG2051|consensus 98.5 4.4E-06 9.5E-11 85.0 17.5 198 22-243 628-833 (1128)
9 KOG1104|consensus 97.1 0.043 9.2E-07 55.0 17.4 205 20-252 23-248 (759)
10 KOG0401|consensus 95.7 0.0036 7.7E-08 65.9 0.7 198 2-205 598-818 (970)
11 PF05918 API5: Apoptosis inhib 95.1 0.61 1.3E-05 46.2 14.0 164 18-203 173-347 (556)
12 PF02847 MA3: MA3 domain; Int 94.0 1.2 2.6E-05 34.1 10.8 110 25-161 2-113 (113)
13 smart00544 MA3 Domain in DAP-5 92.5 1.7 3.6E-05 33.4 9.5 62 26-89 3-66 (113)
14 PF07817 GLE1: GLE1-like prote 91.6 9.6 0.00021 34.1 15.1 172 19-206 24-241 (256)
15 KOG2140|consensus 87.6 8.6 0.00019 37.8 11.4 104 37-170 465-568 (739)
16 KOG2141|consensus 83.8 5.8 0.00013 40.2 8.5 106 33-167 627-732 (822)
17 cd03567 VHS_GGA VHS domain fam 53.4 1.2E+02 0.0026 24.4 9.4 94 146-248 20-118 (139)
18 KOG4728|consensus 42.3 88 0.0019 26.4 6.1 71 20-90 58-131 (176)
19 PF09733 VEFS-Box: VEFS-Box of 42.1 36 0.00078 27.6 3.6 29 144-172 112-140 (140)
20 cd03561 VHS VHS domain family; 38.6 1.9E+02 0.0042 22.7 11.0 89 146-246 19-112 (133)
21 cd03569 VHS_Hrs_Vps27p VHS dom 26.8 3.3E+02 0.0072 21.8 10.1 92 146-248 23-116 (142)
22 KOG1831|consensus 26.5 96 0.0021 34.2 4.6 69 19-89 374-443 (1591)
23 PF12311 DUF3632: Protein of u 25.8 2.8E+02 0.0061 22.7 6.7 65 141-205 78-145 (184)
24 PF00790 VHS: VHS domain; Int 25.3 3.4E+02 0.0075 21.4 8.9 91 146-248 24-120 (140)
25 KOG2412|consensus 23.0 7.8E+02 0.017 24.7 14.4 167 55-241 381-579 (591)
26 PF14069 SpoVIF: Stage VI spor 23.0 2E+02 0.0043 20.9 4.4 33 17-49 29-62 (79)
27 KOG2171|consensus 22.9 1E+03 0.022 26.0 16.1 51 187-243 225-275 (1075)
28 PF05309 TraE: TraE protein; 21.9 3.3E+02 0.0072 22.8 6.4 48 3-50 48-99 (187)
29 PF14842 FliG_N: FliG N-termin 21.9 3.3E+02 0.0072 20.6 5.9 43 28-70 23-65 (108)
30 smart00288 VHS Domain present 21.8 4E+02 0.0087 20.9 10.1 91 146-248 19-113 (133)
31 PF13250 DUF4041: Domain of un 21.7 1.1E+02 0.0024 20.5 2.7 24 26-49 9-32 (56)
32 PF08149 BING4CT: BING4CT (NUC 21.0 72 0.0016 23.2 1.8 23 18-40 54-76 (80)
33 PF14658 EF-hand_9: EF-hand do 20.3 2.1E+02 0.0046 20.0 4.0 54 157-222 12-65 (66)
No 1
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=100.00 E-value=5.2e-32 Score=232.86 Aligned_cols=204 Identities=40% Similarity=0.726 Sum_probs=173.4
Q ss_pred HHHHHHhhccChhhHHHHHHHHHhhccCC-HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhCCCCCCCCchhhHHH
Q psy8135 26 RKVRELLNKLTPEKFDKLSDDLLQLDLNS-SKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKK 104 (295)
Q Consensus 26 ~~v~~iLNkLt~~n~~~i~~~l~~~~i~~-~~~l~~vv~~I~ekAv~e~~f~~~yA~Lc~~L~~~~~~~~~~~~~~~Fr~ 104 (295)
|+++++|||||++||+.+++++.++.... ++.++.+++.||++|+.+|.|+++||+||+.|+... +..|+.
T Consensus 2 r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~--------~~~f~~ 73 (209)
T PF02854_consen 2 RKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRF--------PSEFRS 73 (209)
T ss_dssp HHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHC--------HHHHHH
T ss_pred chHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccc--------hhhHHH
Confidence 78999999999999999999999887664 899999999999999999999999999999999875 368999
Q ss_pred HHHHHHHHHHhhhhhhhhhcCCCCCCccHHHHHHHHHhhhhhHHHHHHHHhhcCCCchhHHHHHHHHhccCCCCCCCCCC
Q psy8135 105 HLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKD 184 (295)
Q Consensus 105 ~Ll~~~q~~F~~~~~~~~~~~~~~l~~ee~e~~~~~k~r~~g~i~FigeLf~~~~i~~~ii~~~l~~Ll~~~~~~~~~~~ 184 (295)
.+++.||++|+...... +.++.....++++.|+++||||||++++++.+++++|+..|+..........+
T Consensus 74 ~ll~~~~~~f~~~~~~~----------~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~ 143 (209)
T PF02854_consen 74 LLLNRCQEEFEERYSNE----------ELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPP 143 (209)
T ss_dssp HHHHHHHHHHHHHT-HH----------HHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHT
T ss_pred HHHHHHHHHHHHhhhhh----------hHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCCC
Confidence 99999999999843110 11122344567788999999999999999999999999999997432100014
Q ss_pred ChhhHHHHHHHHHHhhhhhc-CchhhhHHHHHHHHHHHHHhCC--CCCChHHHHHHHHHHHHHhCC
Q psy8135 185 VSENLECLCQIMKTCGRILD-SEKGQGLMNQYFSRMKTVQTST--PHLPLRIRFMLQDVEDLRRNN 247 (295)
Q Consensus 185 ~e~~iE~l~~LL~~~G~~L~-~~~~~~~ld~~f~~L~~l~~~~--~~~s~rirfmi~~lielR~~~ 247 (295)
++.+|+|+|.+|..||+.|+ ....++.|+++|..++....+. +.+++|+|||+++++|+|+|+
T Consensus 144 ~~~~ie~~~~lL~~~G~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~l~~lr~~~ 209 (209)
T PF02854_consen 144 DEENIECLCTLLKTCGKKLENSEESPKALDEIFERLQKYANSKKDPNLSSRIRFMLEDLIELRNNK 209 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHSSSSSHHHHHHHHHHHHHHHTC
T ss_pred cHhHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhcCC
Confidence 56899999999999999999 3346678999999999999983 489999999999999999975
No 2
>KOG0401|consensus
Probab=99.98 E-value=1.3e-32 Score=282.23 Aligned_cols=262 Identities=35% Similarity=0.667 Sum_probs=212.9
Q ss_pred ccCCCCccccC------CCCCcchHHHHHHHHHHHhhccChhhHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhhcccch
Q psy8135 3 RWIPPSALRRD------ALTPENVQDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYT 76 (295)
Q Consensus 3 ~~~p~~~~~~~------~~~e~~~~~~l~~~v~~iLNkLt~~n~~~i~~~l~~~~i~~~~~l~~vv~~I~ekAv~e~~f~ 76 (295)
+|.|...+... ...+....+++.+.|+++||++||.+++.++.+++...+.+.+.++.+|..||+||+.+|.|+
T Consensus 322 ~~~ps~k~a~~~~~~~~~~~~~~~~~el~~~vrsilnkltp~~~~~l~~q~~~~~i~t~~~l~~vi~~vfdkAi~EP~f~ 401 (970)
T KOG0401|consen 322 APSPSPKRAKSKSDQGAERKDVELKEELAKRVRSLLNKLTPERKELLIEQLIELNVDTDDALKEVIELVFDKAINEPTFC 401 (970)
T ss_pred CCCCcchhhccccccccccchhHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhhccCcHHHHhHHHHHHHHhhhcccccc
Confidence 46666665322 122347899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--hCCCCCCCCchhhHHHHHHHHHHHHHhhhh-hhhhhcCCCCCCccH-----HHHHHHHHhhhhhHH
Q psy8135 77 SMYARLCKRLTE--QAPNFEPPDESCTFKKHLLWVCKNEFENRS-RATEAFGNLPLSPDD-----EDRRQLAKQKMLGNI 148 (295)
Q Consensus 77 ~~yA~Lc~~L~~--~~~~~~~~~~~~~Fr~~Ll~~~q~~F~~~~-~~~~~~~~~~l~~ee-----~e~~~~~k~r~~g~i 148 (295)
.+||++|..|.. ..|..+.......||+.||++||++|+... ...+.+.. ...+++ ++.+...++|.+|++
T Consensus 402 ~~yA~lc~~l~~~~~~~~~~~~~~~~~fr~~lL~rcq~~fe~~~~~~~~~~~~-~~~~~~~e~~le~~k~~~~~rtlgn~ 480 (970)
T KOG0401|consen 402 AMYARLCFDLEGPPSEPELDMGGDEINFRRLLLNRCQKEFEGEDDKIADEYSE-AEEPDELEEELEEEKYILRRRTLGNF 480 (970)
T ss_pred hhcchhcccccCCccCCCcCCCCCcccHHHHHHHHhHHHhhcccHHHHHHhhh-hcCchhHHHHHHhccceecCCccchH
Confidence 999999999987 223333356788999999999999999765 22221111 011111 122345678999999
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHhccCCCCCCCCCCChhhHHHHHHHHHHhhhhhcCchhhhH-HHHHHHHHHHHHhCCC
Q psy8135 149 KFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGL-MNQYFSRMKTVQTSTP 227 (295)
Q Consensus 149 ~FigeLf~~~~i~~~ii~~~l~~Ll~~~~~~~~~~~~e~~iE~l~~LL~~~G~~L~~~~~~~~-ld~~f~~L~~l~~~~~ 227 (295)
+|||+||...+++..|++.|+..|+... .++++++||+|.|++++|..+|..+.+.. |+.+|.+++.++...
T Consensus 481 ~~ig~l~~~~ml~e~i~~~~v~~Ll~~~------~~~ee~ie~lc~f~~tig~~lD~~~~s~r~md~~~~~~k~~~~~~- 553 (970)
T KOG0401|consen 481 RFIGELFKLKMLTEKIVHACVQKLLSDD------QPSEESIECLCRFLTTIGKKLDFSKESPRNMDEYFNSMKNLKRKP- 553 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc------cccchhhhhHHhhhhcccccccccCcccchhHHHHHHHHHhhhhh-
Confidence 9999999999999999999999999972 15789999999999999999997554455 999999999988776
Q ss_pred CCChHHHHHHHHHHHHHhCCCccCccCCCCCCC-ChHHHHHHhcCCCC
Q psy8135 228 HLPLRIRFMLQDVEDLRRNNWVPRQANNPEKPV-PINQIIEEDHDPVN 274 (295)
Q Consensus 228 ~~s~rirfmi~~lielR~~~W~~~~~~~~~~p~-~~~~i~~~~~~~~~ 274 (295)
..+.|+|||+++++++|.++|+++.+. .++. ++++++.++....+
T Consensus 554 ~~s~r~RfM~~~~idlR~~~w~~rr~~--~~~~~~ieei~~~~~~~~~ 599 (970)
T KOG0401|consen 554 QRSNRIRFMLQSVIDLRKSGWGPRRAE--ETNDKPIEEIAPEAPSANR 599 (970)
T ss_pred hhccchhhhhccccccccccccchhcc--cCCCCchhhcchhhhhhcc
Confidence 889999999999999999999999873 4444 89999999766554
No 3
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=99.97 E-value=2.3e-28 Score=209.57 Aligned_cols=197 Identities=33% Similarity=0.581 Sum_probs=169.5
Q ss_pred HHHHHHhhccChhhHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhCCCCCCCCchhhHHHH
Q psy8135 26 RKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKH 105 (295)
Q Consensus 26 ~~v~~iLNkLt~~n~~~i~~~l~~~~i~~~~~l~~vv~~I~ekAv~e~~f~~~yA~Lc~~L~~~~~~~~~~~~~~~Fr~~ 105 (295)
+++++++||||++|++.++++|..++..+++..+.+++.|+++|+.+|.|+++||+||..++... ..|+..
T Consensus 2 ~~v~~~lnkLs~~n~~~~~~~l~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~---------~~f~~~ 72 (200)
T smart00543 2 KKVKGLINKLSPSNFESIIKELLKLNNSDKNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKN---------PDFGSL 72 (200)
T ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH---------HHHHHH
Confidence 57999999999999999999999998877889999999999999999999999999999999753 379999
Q ss_pred HHHHHHHHHhhhhhhhhhcCCCCCCccHHHHHHHHHhhhhhHHHHHHHHhhcCCCchhHHHHHHHHhccCCCCCCCCCCC
Q psy8135 106 LLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDV 185 (295)
Q Consensus 106 Ll~~~q~~F~~~~~~~~~~~~~~l~~ee~e~~~~~k~r~~g~i~FigeLf~~~~i~~~ii~~~l~~Ll~~~~~~~~~~~~ 185 (295)
+++.|+++|+..... .+...++++.|+++||||||++++++..++++|+..|+.....+.. .++
T Consensus 73 ll~~~~~~f~~~~e~---------------~~~~~~~~~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~-~~~ 136 (200)
T smart00543 73 LLERLQEEFEKGLES---------------EEESDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDP-PRS 136 (200)
T ss_pred HHHHHHHHHHHHHHH---------------HHHHhhhhHHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCC-CCc
Confidence 999999999874211 1123456788999999999999999999999999999997432111 134
Q ss_pred hhhHHHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHhCCC--CCChHHHHHHHHHHHHHhCC
Q psy8135 186 SENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTP--HLPLRIRFMLQDVEDLRRNN 247 (295)
Q Consensus 186 e~~iE~l~~LL~~~G~~L~~~~~~~~ld~~f~~L~~l~~~~~--~~s~rirfmi~~lielR~~~ 247 (295)
+.++||+|.+|..||+.|+.+..+..|+.++..++....+.+ .+++|+|||+++++++|+++
T Consensus 137 ~~~ve~l~~lL~~~G~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~r~~~~l~~l~~l~~~~ 200 (200)
T smart00543 137 DFSVECLLSLLPTCGKDLEREKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELLIELRKNK 200 (200)
T ss_pred HHHHHHHHHHHHHhhHHHcCcccHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHhhCc
Confidence 679999999999999999943467789999999999998653 58999999999999999863
No 4
>KOG2140|consensus
Probab=99.91 E-value=7.1e-24 Score=197.71 Aligned_cols=232 Identities=20% Similarity=0.360 Sum_probs=193.4
Q ss_pred CccCCCCccccCC--CCC-------cchHHHHHHHHHHHhhccChhhHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhhc
Q psy8135 2 TRWIPPSALRRDA--LTP-------ENVQDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHE 72 (295)
Q Consensus 2 ~~~~p~~~~~~~~--~~e-------~~~~~~l~~~v~~iLNkLt~~n~~~i~~~l~~~~i~~~~~l~~vv~~I~ekAv~e 72 (295)
-+|+||+..+... .++ -..|+.+++.|.|++|+++.+|+..++.+|+..+|.....| +...|++.....
T Consensus 133 G~YIPPaKL~~mq~qi~Dk~s~~yQRmnWEalkksInglInkvn~sNi~~ii~eLfqeNiirgRgl--~crsv~~aq~as 210 (739)
T KOG2140|consen 133 GAYIPPAKLRMMQAQITDKNSIEYQRMNWEALKKSINGLINKVNASNIQEIIRELFQENIIRGRGL--LCRSVMQAQAAS 210 (739)
T ss_pred CeecCHHHHHHHHHHhcccchHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHhccch--hHHHHHHHHhcC
Confidence 4799999877652 222 15899999999999999999999999999998877665555 778888888889
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCCCchhhHHHHHHHHHHHHHhhhhhhhhhcCCCCCCccHHHHHHHHHhhhhhHHHHHH
Q psy8135 73 TKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIG 152 (295)
Q Consensus 73 ~~f~~~yA~Lc~~L~~~~~~~~~~~~~~~Fr~~Ll~~~q~~F~~~~~~~~~~~~~~l~~ee~e~~~~~k~r~~g~i~Fig 152 (295)
|.|+++||.|++.|+..+|.+ +....++++| .+.+.|.. ..|..|++.++||+
T Consensus 211 p~ft~vyaALvAviNskfP~I----gElLlkrLil-qf~r~f~R----------------------nDk~~c~~~~kfia 263 (739)
T KOG2140|consen 211 PGFTPVYAALVAVINSKFPQI----GELLLKRLIL-QFKRSFRR----------------------NDKVSCLNASKFIA 263 (739)
T ss_pred CCCcHHHHHHHHHHccCCchH----HHHHHHHHHH-HHHHHhcc----------------------cchHHHHHHHHHHH
Confidence 999999999999999998866 3556666666 33334432 12356889999999
Q ss_pred HHhhcCCCchhHHHHHHHHhccCCCCCCCCCCChhhHHHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHhCCCCCChH
Q psy8135 153 ELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLR 232 (295)
Q Consensus 153 eLf~~~~i~~~ii~~~l~~Ll~~~~~~~~~~~~e~~iE~l~~LL~~~G~~L~~~~~~~~ld~~f~~L~~l~~~~~~~s~r 232 (295)
+|+++++..+-+.+.++-.||.. |++++||.++.+|+.||..|-. .++..++.+|++|+.+.... .++.|
T Consensus 264 hLinq~VahEIv~Leil~lLLe~--------PTddSvevaI~flkecGakL~~-VSpr~~n~IfErlR~ILhe~-Eld~r 333 (739)
T KOG2140|consen 264 HLINQQVAHEIVALEILTLLLER--------PTDDSVEVAIAFLKECGAKLAE-VSPRALNGIFERLRYILHEG-ELDRR 333 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--------CCCchHHHHHHHHHHHHHHHHH-hChHHHhHHHHHHHHHHhHh-hHHHH
Confidence 99999999999999999999997 8999999999999999999985 46678999999999999887 79999
Q ss_pred HHHHHHHHHHHHhCCCccCccCCCCCCCChHHHHHHhcCCCCCC
Q psy8135 233 IRFMLQDVEDLRRNNWVPRQANNPEKPVPINQIIEEDHDPVNFI 276 (295)
Q Consensus 233 irfmi~~lielR~~~W~~~~~~~~~~p~~~~~i~~~~~~~~~~~ 276 (295)
+++||+.+++.|+.+++.. ..++..++-+.++++-.+-..
T Consensus 334 vqy~iEtlf~iRkdkfk~~----p~v~~~LDlvee~dq~tH~l~ 373 (739)
T KOG2140|consen 334 VQYMIETLFQIRKDKFKSH----PAVLEELDLVEEEDQITHSLS 373 (739)
T ss_pred HHHHHHHHHHHHHHhhccC----CccccccCccchhhheeeeee
Confidence 9999999999999998765 457888888888876655333
No 5
>KOG2141|consensus
Probab=99.91 E-value=6.7e-23 Score=196.97 Aligned_cols=233 Identities=21% Similarity=0.299 Sum_probs=175.7
Q ss_pred CCccCCCCccccCC-CCCcchHHHHHHHHHHHhhccChhhHHHHHHHHHhhccCC-HHHHHHHHHHHHHHhhh-----cc
Q psy8135 1 MTRWIPPSALRRDA-LTPENVQDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNS-SKILKGVILLIFEKALH-----ET 73 (295)
Q Consensus 1 ~~~~~p~~~~~~~~-~~e~~~~~~l~~~v~~iLNkLt~~n~~~i~~~l~~~~i~~-~~~l~~vv~~I~ekAv~-----e~ 73 (295)
.++|||||+|+..+ ..+++...+++++|+|+||||+.+|+..|+..|..++..+ ....+.-+...+.+|+. -.
T Consensus 295 ~sKYvPPslRkkl~~~~~sE~l~rl~rkv~g~LNKLSdaNi~~I~~~i~~Ly~~~sr~~v~~sLtk~l~~~~~~~~~~ld 374 (822)
T KOG2141|consen 295 SSKYVPPSLRKKLETSSESEQLQRLRRKVNGSLNKLSDANIIKIIAGIAELYMNNSRYDVTSSLTKLLLKALLGPFRLLD 374 (822)
T ss_pred ccccCCHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhhHHHHH
Confidence 36899999999864 4577899999999999999999999999999999998753 23334444444444543 33
Q ss_pred cchHHHHHHHHHHHhhCCCCCCCCchhhHHHHHHHHHHHHHhhhhhhhhhcCCCCCCccHHHHHHHHHhhhhhHHHHHHH
Q psy8135 74 KYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGE 153 (295)
Q Consensus 74 ~f~~~yA~Lc~~L~~~~~~~~~~~~~~~Fr~~Ll~~~q~~F~~~~~~~~~~~~~~l~~ee~e~~~~~k~r~~g~i~Fige 153 (295)
.++..||.|.+.|+... +..|..+++..+-+.|-...+..+.. ++ .-+.+.|++.|+++
T Consensus 375 ~~~~~y~AL~~~l~~~v--------g~eigahf~q~~ve~f~~~~~~~~~~---~~----------~~K~~~Nl~~~l~y 433 (822)
T KOG2141|consen 375 SLLTTYAALAAMLHTMV--------GNEIGAHFLQTFVEDFLKSYKEEEEM---DL----------KDKSLNNIVLFLSY 433 (822)
T ss_pred HHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHhc---cc----------ccchhhhHHHHHHH
Confidence 57889999999999764 33444445554445554443321110 00 12458899999999
Q ss_pred HhhcCCCchhHHHHHHHHhccCCCCCCCCCCChhhHHHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHhCCC--CCCh
Q psy8135 154 LGKHEIVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTP--HLPL 231 (295)
Q Consensus 154 Lf~~~~i~~~ii~~~l~~Ll~~~~~~~~~~~~e~~iE~l~~LL~~~G~~L~~~~~~~~ld~~f~~L~~l~~~~~--~~s~ 231 (295)
||++++++..+|+++|+.|... +++.++||+..++..||..|..+ .+..+.+++.-++..+.+.+ ..++
T Consensus 434 lynF~ivs~~LiydiI~kl~~~--------l~e~~ve~ll~ii~~~G~~LRkD-Dp~alk~~i~eiq~~a~~a~~s~~~p 504 (822)
T KOG2141|consen 434 LYNFGIVSCSLIYDIIRKLAEN--------LNETNVEALLTIIANCGFSLRKD-DPLALKDIITEIQSKAASAKISAISP 504 (822)
T ss_pred HHHhhcccHHHHHHHHHHHHhc--------hhhhhHHHHHHHHHHccchhcCC-ChHHHHHHHHHHHHHhhcCCccccch
Confidence 9999999999999999999987 89999999999999999999986 44678888888888776542 2389
Q ss_pred HHHHHHHHHHHHHhCCCccCccCCCCCCCChHHHH
Q psy8135 232 RIRFMLQDVEDLRRNNWVPRQANNPEKPVPINQII 266 (295)
Q Consensus 232 rirfmi~~lielR~~~W~~~~~~~~~~p~~~~~i~ 266 (295)
|+|||++.+..+++|+-++.. ..+|..++-+|
T Consensus 505 R~rFmleti~aLKnN~~kki~---~~d~e~ve~lr 536 (822)
T KOG2141|consen 505 RLRFMLETISALKNNKLKKIP---YADPERVENLR 536 (822)
T ss_pred HHHHHHHHHHHHhcCCCcCCC---cCChHHHHHHH
Confidence 999999999999998876543 34554455455
No 6
>KOG3942|consensus
Probab=99.27 E-value=9.4e-11 Score=103.86 Aligned_cols=170 Identities=21% Similarity=0.200 Sum_probs=136.9
Q ss_pred CHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhCCCCCCCCchhhHHHHHHHHHHHHHhhhhhhhhhcCCCCCCccH
Q psy8135 54 SSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDD 133 (295)
Q Consensus 54 ~~~~l~~vv~~I~ekAv~e~~f~~~yA~Lc~~L~~~~~~~~~~~~~~~Fr~~Ll~~~q~~F~~~~~~~~~~~~~~l~~ee 133 (295)
+++.+-+.+-.|+.+|++...|.-..++||..+...+ ..++.|+..|++.|++.|.-+... ..
T Consensus 163 ~de~l~rc~~~~~r~avegg~ggl~v~klC~n~~~~~------~~gt~f~~~Lln~lrq~f~~r~gl---------~s-- 225 (348)
T KOG3942|consen 163 DDEMLFRCGPTIARQAVEGGGGGLFVCKLCTNLGSSW------RNGTQFMDELLNLLRQGFLLRTGL---------SS-- 225 (348)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCchhHHHHhhhhhhhh------hccchHHHHHHHHHHHhhccchhc---------cc--
Confidence 4577888999999999999999999999999998764 246779999999999999876432 11
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhcC-----CCchhHHHHHHHHhccCCCCCCCCCCChhhHHHHHHHHHHhhhhhcCchh
Q psy8135 134 EDRRQLAKQKMLGNIKFIGELGKHE-----IVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKG 208 (295)
Q Consensus 134 ~e~~~~~k~r~~g~i~FigeLf~~~-----~i~~~ii~~~l~~Ll~~~~~~~~~~~~e~~iE~l~~LL~~~G~~L~~~~~ 208 (295)
....||.+.|.|++|||.+- ++-..+++.|++.|+... + -.+..+||+...|...|.-++.. -
T Consensus 226 -----~~~~rw~~fisfltelf~nlgs~p~~vL~~~l~~cl~~llrsp---d---~~~~e~ecl~~~L~~~g~dle~q-l 293 (348)
T KOG3942|consen 226 -----LASCRWWRFISFLTELFDNLGSCPQVVLQRSLRLCLQILLRSP---D---WPEFEYECLSMKLAVEGLDLEKQ-L 293 (348)
T ss_pred -----hhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHccCC---C---cchHHHHHHHHHHHHcCccchhh-h
Confidence 23357999999999999862 455688999999999972 1 34678999999999999999974 4
Q ss_pred hhHHHHHHHHHHHHHhCCCCCC-hHHHHHHHHHHHHHhCCCccCcc
Q psy8135 209 QGLMNQYFSRMKTVQTSTPHLP-LRIRFMLQDVEDLRRNNWVPRQA 253 (295)
Q Consensus 209 ~~~ld~~f~~L~~l~~~~~~~s-~rirfmi~~lielR~~~W~~~~~ 253 (295)
+..|..+|...++..... .-| .-+|+++..++|+.++.|..+..
T Consensus 294 P~ql~lL~~s~rDafL~~-sep~a~~r~~lllliel~As~wqlpt~ 338 (348)
T KOG3942|consen 294 PFQLLLLFPSRRDAFLVR-SEPLAPWRCPLLLLIELPASAWQLPTT 338 (348)
T ss_pred hHHHHHHHHHHHHhhhcc-ccccccccchhhhccccCccccCCCCC
Confidence 466888888888777654 323 34599999999999999998754
No 7
>KOG2051|consensus
Probab=99.12 E-value=2.3e-09 Score=108.22 Aligned_cols=192 Identities=20% Similarity=0.338 Sum_probs=141.3
Q ss_pred chHHHHHHHHHHHhhccCh----hhHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhCCCCC
Q psy8135 19 NVQDATFRKVRELLNKLTP----EKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFE 94 (295)
Q Consensus 19 ~~~~~l~~~v~~iLNkLt~----~n~~~i~~~l~~~~i~~~~~l~~vv~~I~ekAv~e~~f~~~yA~Lc~~L~~~~~~~~ 94 (295)
......+.++.+.|-+|.- +-++..+-++.. ++.|...-+.++..+|.-....-...++|++|++.|...+|++
T Consensus 418 ~~~~~~~~~~d~Fl~~L~~~vsrdliD~~a~ef~~-nlNtKa~RkrLvKal~~vprt~ldllPyYsRlVAtl~~~M~dv- 495 (1128)
T KOG2051|consen 418 LNTSQVVSNVDCFLLDLPNCVSRDLIDQAAIEFCS-NLNTKANRKRLVKALFVVPRTRLDLLPYYSRLVATLSKCMPDV- 495 (1128)
T ss_pred cchhhHHHHHHHHHccCcchHHHHHHHHHHHHHHH-HhccHHHHHHHHHhhhcccchhhhhhhHHHHHHHHHHhhhhHH-
Confidence 3445566677777766653 333333333332 2667888889999999877677788999999999999877544
Q ss_pred CCCchhhHHHHHHHHHHHHHhhhhhhhhhcCCCCCCccHHHHHHHHHhhhhhHHHHHHHHhhcCCCchhHHHHHHHHhcc
Q psy8135 95 PPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLP 174 (295)
Q Consensus 95 ~~~~~~~Fr~~Ll~~~q~~F~~~~~~~~~~~~~~l~~ee~e~~~~~k~r~~g~i~FigeLf~~~~i~~~ii~~~l~~Ll~ 174 (295)
-..|++...++|.........+ ... ..+-+++|||||.++++++..-++.|++.|+.
T Consensus 496 --------at~lv~~L~~eFr~~~hkK~q~-------------~ie--tk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~ 552 (1128)
T KOG2051|consen 496 --------ATELVTMLRKEFRSHLHKKAQI-------------NIE--TKLKIVRFISELCKFQLVPKFEIFSCLKMLLN 552 (1128)
T ss_pred --------HHHHHHHHHHHHHHHHhhhhhh-------------hhh--hhhhhhhhHHhhhhhCccChHHHHHHHHHHHH
Confidence 3445666666776432211100 000 12358999999999999999999999999998
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHhhhhhcC-chhhhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Q psy8135 175 KNRKVQTNKDVSENLECLCQIMKTCGRILDS-EKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDVEDLR 244 (295)
Q Consensus 175 ~~~~~~~~~~~e~~iE~l~~LL~~~G~~L~~-~~~~~~ld~~f~~L~~l~~~~~~~s~rirfmi~~lielR 244 (295)
. .+..+||.+|.+|++||+.|-. +..+..|..++++|+...... .+.+|-.-+|+|..-+=
T Consensus 553 d--------F~~hnIEm~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~rkK~a~-~lDsr~~~~iENay~~~ 614 (1128)
T KOG2051|consen 553 D--------FTHHNIEMACVLLESCGRFLLRSPETKLRMRVFLEQIKRKKRAS-ALDSRQATLIENAYYLC 614 (1128)
T ss_pred h--------cccccHHHHHHHHHhcchhhhcChhHHHHHHHHHHHHHHHHHHh-hhchHHHHHHHHhHHhc
Confidence 6 4566799999999999999975 445567999999999888776 78999999999998875
No 8
>KOG2051|consensus
Probab=98.54 E-value=4.4e-06 Score=85.03 Aligned_cols=198 Identities=16% Similarity=0.290 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhh-ccChhhHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhCCCCCCCCchh
Q psy8135 22 DATFRKVRELLN-KLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESC 100 (295)
Q Consensus 22 ~~l~~~v~~iLN-kLt~~n~~~i~~~l~~~~i~~~~~l~~vv~~I~ekAv~e~~f~~~yA~Lc~~L~~~~~~~~~~~~~~ 100 (295)
-.....+|.++- .|+.+||+.++..+-.+.-..+++-+.++..+..-=.-.-.-...-|.|.+.|+..-|.+
T Consensus 628 ~p~~efiR~Li~~dL~k~tvd~~lkllRkl~W~D~e~~~yli~~~~k~w~iky~~i~~lA~llaGL~~y~~~f------- 700 (1128)
T KOG2051|consen 628 PPMQEFIRYLIRSDLSKDTVDRVLKLLRKLDWSDPEVKQYLISCFSKPWKIKYQNIHALASLLAGLSSYHPEF------- 700 (1128)
T ss_pred CcHHHHHHHHHHHHhccccHHHHHHHHHhcccccHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHhhchhh-------
Confidence 344455555444 677777887887776655456666666777665433222223455677888887654433
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhcCCCCCCccHHHHHHHHHhhhhhHHHHHHHHhhcCCCchhHHHHHHHHhccCCCCCC
Q psy8135 101 TFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQ 180 (295)
Q Consensus 101 ~Fr~~Ll~~~q~~F~~~~~~~~~~~~~~l~~ee~e~~~~~k~r~~g~i~FigeLf~~~~i~~~ii~~~l~~Ll~~~~~~~ 180 (295)
.-.++ -..++.....++. . ....++|+++.++|+||||++.++...+|+..+-.++.-...+.
T Consensus 701 --vi~VI---D~vlE~Ir~glEi------n------~~~~nQrriA~aryL~ELynfemvds~vIl~tLy~~i~~g~~~~ 763 (1128)
T KOG2051|consen 701 --VIHVI---DHVLEDIRPGLEI------N------DYVSNQRRIALARYLGELYNFEMVDSDVILNTLYHLISLGHFEN 763 (1128)
T ss_pred --hhhhH---HHHHHHHHhhhhc------C------cHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcccccCC
Confidence 12222 2234433222210 0 12356788999999999999999999999999988876421111
Q ss_pred C---C-CCCh--hhHHHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHhCCC-CCChHHHHHHHHHHHH
Q psy8135 181 T---N-KDVS--ENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTP-HLPLRIRFMLQDVEDL 243 (295)
Q Consensus 181 ~---~-~~~e--~~iE~l~~LL~~~G~~L~~~~~~~~ld~~f~~L~~l~~~~~-~~s~rirfmi~~liel 243 (295)
+ . +|.+ .-|..+|.+|.+||+.+...+++..|+.++-.++...--.+ ..|--+.++.++.+++
T Consensus 764 ~~~~~ldppddlFRirlV~~lL~tc~~yf~rgs~kkkl~~fL~~fq~Y~~iKk~~~Pld~~~~f~d~~~~ 833 (1128)
T KOG2051|consen 764 LTPSALDPPDDLFRIRLVCMLLQTCGPYFTRGSTKKKLDQFLVAFQRYILIKKSQQPLDMEYEFEDFLEL 833 (1128)
T ss_pred CCcccCCChHHHHHHHHHHHHHHHcccccccchhHHHHHHHHHHHHHHhhcccccCCCchhhhHHhhhhh
Confidence 0 0 1222 24899999999999999987777889999888887765431 2566666766666554
No 9
>KOG1104|consensus
Probab=97.08 E-value=0.043 Score=55.02 Aligned_cols=205 Identities=13% Similarity=0.211 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHHhhccChhhHHHHHHHHHhhc--c--CCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhCCCCCC
Q psy8135 20 VQDATFRKVRELLNKLTPEKFDKLSDDLLQLD--L--NSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEP 95 (295)
Q Consensus 20 ~~~~l~~~v~~iLNkLt~~n~~~i~~~l~~~~--i--~~~~~l~~vv~~I~ekAv~e~~f~~~yA~Lc~~L~~~~~~~~~ 95 (295)
.++.+.+.+.+..-++....-..+-+.+..+. + .-+..-..+++.+..-|+.-|.-...||-|+..++..-
T Consensus 23 ~~e~l~krl~~~i~~vg~~s~ss~e~~l~~l~~~l~~~~~~~~~~iL~~L~~ca~~lP~K~~~yaTLvgllN~kn----- 97 (759)
T KOG1104|consen 23 PAETLEKRLESLIREVGEPSGSSVEDNLENLVAVLEADLENFKSKILDILNTCAVYLPEKITAYATLVGLLNLKN----- 97 (759)
T ss_pred cHHHHHHHHHHHHHhhcCCCCCcHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhccc-----
Confidence 56778888888888887332222333333220 1 11224566778888888899999999999999998642
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhhhhhhcCCCCCCccHHHHHHHHHhhhhhHHHHHHHHhhcCCCchhHHHHHHHHhccC
Q psy8135 96 PDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPK 175 (295)
Q Consensus 96 ~~~~~~Fr~~Ll~~~q~~F~~~~~~~~~~~~~~l~~ee~e~~~~~k~r~~g~i~FigeLf~~~~i~~~ii~~~l~~Ll~~ 175 (295)
-.|...++...-.+|...... ..-.++-+.++|++.|++-+++...-+..+...|+..
T Consensus 98 ----~~fg~~~v~~~~~~~q~sl~~------------------~~~n~ar~llrfL~dL~~~~vl~~~sli~l~esl~~~ 155 (759)
T KOG1104|consen 98 ----FNFGGEFVEYMIEELQESLKS------------------GNWNEARYLLRFLSDLSNCHVLQADSLINLFESLLDA 155 (759)
T ss_pred ----hhhHHHHHHHHHHHHHHHhhc------------------CChHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHH
Confidence 245555555444444422110 0012344899999999999999998888888888876
Q ss_pred CCCCCC-CCCChhhHHHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHhCCC--------------CCC--hHHHHHHH
Q psy8135 176 NRKVQT-NKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTP--------------HLP--LRIRFMLQ 238 (295)
Q Consensus 176 ~~~~~~-~~~~e~~iE~l~~LL~~~G~~L~~~~~~~~ld~~f~~L~~l~~~~~--------------~~s--~rirfmi~ 238 (295)
...... +.-.+--+-|++.-|--+|+.+... -++.|++++..++.....+. ... -=++.+..
T Consensus 156 ~~e~~~Pqvr~D~~v~~vLs~lPw~g~el~e~-~~~~~e~ll~~ie~Yl~~R~~shi~lL~vw~~~~~~~qeeyle~L~~ 234 (759)
T KOG1104|consen 156 AIEENVPQVRRDYYVYCVLSSLPWFGRELNEK-KPTEMEELLVYIEIYLKKRKKSHINLLNVWSGEPDHPQEEYLELLWA 234 (759)
T ss_pred HHhhcCcchhhhHHHHHHHhccchhhhhhccc-chHHHHHHHHHHHHHHHHhcccccchhhcCCCCCCchHHHHHHHHHH
Confidence 321100 0122345778888888899999863 45789999999887765321 011 23678899
Q ss_pred HHHHHHhCCCccCc
Q psy8135 239 DVEDLRRNNWVPRQ 252 (295)
Q Consensus 239 ~lielR~~~W~~~~ 252 (295)
.+..+|.|+|..+.
T Consensus 235 qI~~lr~n~w~e~h 248 (759)
T KOG1104|consen 235 QIQKLRQNDWAENH 248 (759)
T ss_pred HHHHHHhcCccccc
Confidence 99999999998753
No 10
>KOG0401|consensus
Probab=95.68 E-value=0.0036 Score=65.92 Aligned_cols=198 Identities=24% Similarity=0.287 Sum_probs=133.7
Q ss_pred CccCCCCccccCC-----CCCcch--HHHHHHHHHHHhhccChhhHHHHHHHHHhhc---c--CCHHHHHHHHHHHHHHh
Q psy8135 2 TRWIPPSALRRDA-----LTPENV--QDATFRKVRELLNKLTPEKFDKLSDDLLQLD---L--NSSKILKGVILLIFEKA 69 (295)
Q Consensus 2 ~~~~p~~~~~~~~-----~~e~~~--~~~l~~~v~~iLNkLt~~n~~~i~~~l~~~~---i--~~~~~l~~vv~~I~ekA 69 (295)
++|+|.++..... ..++.. .+...+.+.+.+++++++.|+.+...+.... + .+.......+..++.++
T Consensus 598 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~e~~~~~~k~~~~~~~~k~ 677 (970)
T KOG0401|consen 598 NRWSPKSLSKKTEGRLAEESDSGLLGKEVVERKGKSGLRKLTPEMFDKISDPILDIADQSMDEEDGEASKQKGEQGGRKA 677 (970)
T ss_pred cccCcccccccccccccccccccccCccccccccccccccCChhhcccccccccccchhhccccccchhhhccccccccc
Confidence 5688888876552 112222 2233578899999999999999999877542 1 24578888899999999
Q ss_pred hhcccchHHHHHHHHHHHhhCC-CCCC-----CCchhhHHHHHHHHHHHHHhhhhhhhhhcCCC--C---CCccHHHHHH
Q psy8135 70 LHETKYTSMYARLCKRLTEQAP-NFEP-----PDESCTFKKHLLWVCKNEFENRSRATEAFGNL--P---LSPDDEDRRQ 138 (295)
Q Consensus 70 v~e~~f~~~yA~Lc~~L~~~~~-~~~~-----~~~~~~Fr~~Ll~~~q~~F~~~~~~~~~~~~~--~---l~~ee~e~~~ 138 (295)
..+++|+.+|+..|........ .+.+ ..+...+...+..+|+.+|...+......... + ...++.....
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~e~~~~~~~~~~ 757 (970)
T KOG0401|consen 678 SDEQHFSSMRAPALEKVVPSLSSDIDDKRNRGSNGELLSDSYLSARCHEEFENGWSRELPSGKDGEREPEMMSPEYYAAK 757 (970)
T ss_pred CccccccccCCccccccccccccccccccccCCccccccccccchhhhhhccccccccCCCCcccccchhhcCcccchhh
Confidence 9999999999999988765432 1111 23456678888999998888766442110000 1 1122222334
Q ss_pred HHHhhhhhHHHHHHHHhhcCCCchhHHHHHHHHhccCCCCCCCCCCChhhHHHHHHHHHHhhhhhcC
Q psy8135 139 LAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDS 205 (295)
Q Consensus 139 ~~k~r~~g~i~FigeLf~~~~i~~~ii~~~l~~Ll~~~~~~~~~~~~e~~iE~l~~LL~~~G~~L~~ 205 (295)
..+++.+|++ +........+.+..++..++...+... . .+..+.++..+.++.++|..++.
T Consensus 758 ~~~~~~~~~v-~~~~~~~l~~~sk~l~ee~~~~~~~~~---~--~~~ie~l~S~~~~~~~v~~~v~~ 818 (970)
T KOG0401|consen 758 AAKRAGLGLV-IALSSELLELLSKSLLEEFLSLRLEKE---A--LKCIEELESPSLLLKTVGENIEP 818 (970)
T ss_pred hhhccCCcch-hhhhHHHHHHHHHHHHHHHHHHhhhhh---h--hhhhhcccchhhhHHHHHHhcCc
Confidence 4567788887 444444456778888888887666542 1 14566788999999999999986
No 11
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.13 E-value=0.61 Score=46.17 Aligned_cols=164 Identities=20% Similarity=0.260 Sum_probs=92.4
Q ss_pred cchHHHHHHHHHHHhhccChhhHHHHHHHHHhhcc----CCHHHHHHHHHHHHHHhhhcccc----hHHHHHHHHHHHhh
Q psy8135 18 ENVQDATFRKVRELLNKLTPEKFDKLSDDLLQLDL----NSSKILKGVILLIFEKALHETKY----TSMYARLCKRLTEQ 89 (295)
Q Consensus 18 ~~~~~~l~~~v~~iLNkLt~~n~~~i~~~l~~~~i----~~~~~l~~vv~~I~ekAv~e~~f----~~~yA~Lc~~L~~~ 89 (295)
++..+-+...++.+|..+|.+.|+.+.+=|-.+.+ .+....++++++|.++|--+..| .....++..-+...
T Consensus 173 ~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~A 252 (556)
T PF05918_consen 173 KEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQA 252 (556)
T ss_dssp HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHh
Confidence 45667888899999999999999988855545555 47889999999999999544333 46777777777777
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHhhhhhhhhhcCCCCCCccHHHHHHHHHhhhhhHHHHHHHHhhc-CCCchhHHHHH
Q psy8135 90 APNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKH-EIVTESILHTC 168 (295)
Q Consensus 90 ~~~~~~~~~~~~Fr~~Ll~~~q~~F~~~~~~~~~~~~~~l~~ee~e~~~~~k~r~~g~i~FigeLf~~-~~i~~~ii~~~ 168 (295)
+|-+.....++.|-..+..+ .|-.. . .+ +|+ ..+-.++.+||+-.+ +-....-+...
T Consensus 253 lp~fs~~v~Sskfv~y~~~k---vlP~l----~-----~l-~e~---------~kl~lLk~lAE~s~~~~~~d~~~~L~~ 310 (556)
T PF05918_consen 253 LPFFSRGVSSSKFVNYMCEK---VLPKL----S-----DL-PED---------RKLDLLKLLAELSPFCGAQDARQLLPS 310 (556)
T ss_dssp GGG-BTTB--HHHHHHHHHH---TCCCT----T--------------------HHHHHHHHHHHHHTT----THHHHHHH
T ss_pred hHHhcCCCChHHHHHHHHHH---hcCCh----h-----hC-ChH---------HHHHHHHHHHHHcCCCCcccHHHHHHH
Confidence 76665444556665555432 22111 0 11 111 123577888888875 32222322233
Q ss_pred HHHhccCCCCCCCCCC--ChhhHHHHHHHHHHhhhhh
Q psy8135 169 IQELLPKNRKVQTNKD--VSENLECLCQIMKTCGRIL 203 (295)
Q Consensus 169 l~~Ll~~~~~~~~~~~--~e~~iE~l~~LL~~~G~~L 203 (295)
|-.+|..+.+.....+ .-..|||++..+...|+.-
T Consensus 311 i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~ 347 (556)
T PF05918_consen 311 IFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKS 347 (556)
T ss_dssp HHHHHHTTS----------HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhC
Confidence 3333322211000011 2236999999999888873
No 12
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=94.02 E-value=1.2 Score=34.14 Aligned_cols=110 Identities=20% Similarity=0.213 Sum_probs=65.3
Q ss_pred HHHHHHHhhc-cChhhHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhhc-ccchHHHHHHHHHHHhhCCCCCCCCchhhH
Q psy8135 25 FRKVRELLNK-LTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHE-TKYTSMYARLCKRLTEQAPNFEPPDESCTF 102 (295)
Q Consensus 25 ~~~v~~iLNk-Lt~~n~~~i~~~l~~~~i~~~~~l~~vv~~I~ekAv~e-~~f~~~yA~Lc~~L~~~~~~~~~~~~~~~F 102 (295)
+++++.+|.- ++....+..+..+.++.++ ....++|..++..+.++ +.+..+|+.|...|... +..+
T Consensus 2 rk~i~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~---------~~~~ 70 (113)
T PF02847_consen 2 RKKIFSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKR---------KLIS 70 (113)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHT---------TSS-
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhc---------CCCC
Confidence 4445544432 2234667777777776555 56778999999999988 89999999999999864 2223
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCCCCCCccHHHHHHHHHhhhhhHHHHHHHHhhcCCCc
Q psy8135 103 KKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVT 161 (295)
Q Consensus 103 r~~Ll~~~q~~F~~~~~~~~~~~~~~l~~ee~e~~~~~k~r~~g~i~FigeLf~~~~i~ 161 (295)
...+..-+++.++....... -..+.+-...+|+|.++..++++
T Consensus 71 ~~~~~~gf~~~l~~l~Dl~~----------------D~P~~~~~la~~~~~~i~~~~lp 113 (113)
T PF02847_consen 71 KEQFQEGFEDLLESLEDLEL----------------DIPKAPEYLAKFLARLIADGILP 113 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------------HSTTHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHHhHhhhccc----------------cchHHHHHHHHHHHHHHHcCCcC
Confidence 33333333333332211100 01123446789999999888764
No 13
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=92.52 E-value=1.7 Score=33.38 Aligned_cols=62 Identities=27% Similarity=0.427 Sum_probs=45.4
Q ss_pred HHHHHHhhc-cChhhHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhhc-ccchHHHHHHHHHHHhh
Q psy8135 26 RKVRELLNK-LTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHE-TKYTSMYARLCKRLTEQ 89 (295)
Q Consensus 26 ~~v~~iLNk-Lt~~n~~~i~~~l~~~~i~~~~~l~~vv~~I~ekAv~e-~~f~~~yA~Lc~~L~~~ 89 (295)
+++..+++. ++.+.++..+..|.++.++ ....+++..++.-+.++ +.+.++|+.|...|.+.
T Consensus 3 k~i~~~l~ey~~~~D~~ea~~~l~~L~~~--~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~ 66 (113)
T smart00544 3 KKIFLIIEEYLSSGDTDEAVHCLLELKLP--EQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQA 66 (113)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHc
Confidence 344444432 2345777788888887665 35677888999888888 58999999999999863
No 14
>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT). This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm []. ; GO: 0016973 poly(A)+ mRNA export from nucleus, 0005643 nuclear pore; PDB: 3PEV_B 3RRN_B 3PEU_B 3RRM_B.
Probab=91.63 E-value=9.6 Score=34.06 Aligned_cols=172 Identities=15% Similarity=0.120 Sum_probs=96.7
Q ss_pred chHHHHHHHHHHHhhccChh--hHHHHHHHHHhh-------------ccC-C----HHHHHHHHHHHHHHhhh----ccc
Q psy8135 19 NVQDATFRKVRELLNKLTPE--KFDKLSDDLLQL-------------DLN-S----SKILKGVILLIFEKALH----ETK 74 (295)
Q Consensus 19 ~~~~~l~~~v~~iLNkLt~~--n~~~i~~~l~~~-------------~i~-~----~~~l~~vv~~I~ekAv~----e~~ 74 (295)
.....++|.|+.-+|+||.+ .+..++.+|.++ ... . .-.+..+++.|+.+|-. .|.
T Consensus 24 k~~~~~kr~I~~~vgQls~~~~qi~~i~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~lAk~iv~Q~e~ev~~~~~ 103 (256)
T PF07817_consen 24 KLRFDLKRKINPKVGQLSNSSSQINRIINQISNLLSGQPVKSNDLQQSKNDHPLAYKYLLNFLAKKIVSQAETEVSANPE 103 (256)
T ss_dssp HHHHHHHHHHCCHHHC--SBHHHHHHHHHHHHHH----------HHTTTT-SHHHHHHHHHHHHHHHHHHHHHHHHH-GG
T ss_pred HHHHHhhhhCcCcHhhccCcHHHHHHHHHHHHHHhhhhhhchhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 35566778888889999954 455555666555 111 1 24677777777777755 577
Q ss_pred chHHHHHHHHHHHhhCCCCCCCCchhhHHHHHHHHHHHHHhhhhhhhhhcCCCCCCccHH-------------HHHHHHH
Q psy8135 75 YTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDE-------------DRRQLAK 141 (295)
Q Consensus 75 f~~~yA~Lc~~L~~~~~~~~~~~~~~~Fr~~Ll~~~q~~F~~~~~~~~~~~~~~l~~ee~-------------e~~~~~k 141 (295)
.+--+|.++..|....|+ |...|+.++...---.....-+... +.+.|+. |.+...-
T Consensus 104 ~A~PlA~v~~~l~~~~p~---------~~dillA~l~k~Cp~~vP~~~~~~~-~~~~e~~~k~lGyk~~~~~~E~~~~y~ 173 (256)
T PF07817_consen 104 SAFPLARVAVQLWSQHPE---------FGDILLARLHKKCPYLVPKYPGFTC-DQSTEEYRKRLGYKRDDGGWESEDQYL 173 (256)
T ss_dssp GHHHHHHHHHHHHHHSTC---------HHHHHHHHHHHH-GGGG----T------SSHHHHHHTT--B-TTSB--HHHHH
T ss_pred hhhhHHHHHHHHHHcCCc---------HHHHHHHHHHHcCceeEeecCcccC-CCCHHHHHHHcCCccCCCCccchHHHH
Confidence 777899999999987654 4455555444422111000000000 0011110 1122334
Q ss_pred hhhhhHHHHHHHHhhcCC---------CchhHHHHHHHHhccCCCCCCCCCCChhhHHHHHHHHHHhhhhhcCc
Q psy8135 142 QKMLGNIKFIGELGKHEI---------VTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSE 206 (295)
Q Consensus 142 ~r~~g~i~FigeLf~~~~---------i~~~ii~~~l~~Ll~~~~~~~~~~~~e~~iE~l~~LL~~~G~~L~~~ 206 (295)
.|+.|++++-|.+..... .+....=..+..+++.. + .++-....+..+|+.+|..|-.-
T Consensus 174 ~Rm~Gi~~lyaAi~~~~~~~~~~~~~p~~~~~~W~wlAr~lN~~----p--~~~~~~~lL~~~Le~ag~~l~~~ 241 (256)
T PF07817_consen 174 KRMTGIIRLYAAIIQTPPPKGQKTSNPHGLEHGWRWLARILNLP----P--APNITATLLHSFLEVAGFRLLQI 241 (256)
T ss_dssp HHHHHHHHHHHHHHHS---CCCCTT-SS-THHHHHHHHHHHCS-----C--C-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCCCCCCCCCcHHHHHHHHHHhCCC----C--CcccHHHHHHHHHHHHHHHHHHH
Confidence 578899999999987532 23333455666677651 0 24556889999999999999863
No 15
>KOG2140|consensus
Probab=87.63 E-value=8.6 Score=37.83 Aligned_cols=104 Identities=19% Similarity=0.326 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhCCCCCCCCchhhHHHHHHHHHHHHHhh
Q psy8135 37 PEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFEN 116 (295)
Q Consensus 37 ~~n~~~i~~~l~~~~i~~~~~l~~vv~~I~ekAv~e~~f~~~yA~Lc~~L~~~~~~~~~~~~~~~Fr~~Ll~~~q~~F~~ 116 (295)
.=.|++..-.|+.+.+.+. .-.+++.+|++-+..+..|..+|.-|..+++.- .......+=..|++.|..
T Consensus 465 SldfeEaaHKLLKmkip~~-q~~elc~mii~cc~QerTy~kFYglL~eRfc~l---------~r~~q~~fe~~f~q~Yst 534 (739)
T KOG2140|consen 465 SLDFEEAAHKLLKMKIPES-QEKELCNMIIDCCAQERTYEKFYGLLGERFCML---------HREWQEAFEKCFKQQYST 534 (739)
T ss_pred cCcHHHHHHHHHhccCCch-hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 4467788888888776543 236789999999999999999999988887752 122223333333444443
Q ss_pred hhhhhhhcCCCCCCccHHHHHHHHHhhhhhHHHHHHHHhhcCCCchhHHHHHHH
Q psy8135 117 RSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQ 170 (295)
Q Consensus 117 ~~~~~~~~~~~~l~~ee~e~~~~~k~r~~g~i~FigeLf~~~~i~~~ii~~~l~ 170 (295)
.+.- + ..|-| +..+|+|+|.....++-.++. ||.
T Consensus 535 Ihr~--------------E---tnkLR--nlakffahLlstd~lpw~vl~-~ik 568 (739)
T KOG2140|consen 535 IHRY--------------E---TNKLR--NLAKFFAHLLSTDALPWDVLA-CIK 568 (739)
T ss_pred HHHH--------------h---HHHHH--HHHHHHHHHhcccccchHHHH-Hhh
Confidence 3211 1 22333 788999999998888765543 443
No 16
>KOG2141|consensus
Probab=83.82 E-value=5.8 Score=40.24 Aligned_cols=106 Identities=23% Similarity=0.322 Sum_probs=69.5
Q ss_pred hccChhhHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhCCCCCCCCchhhHHHHHHHHHHH
Q psy8135 33 NKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKN 112 (295)
Q Consensus 33 NkLt~~n~~~i~~~l~~~~i~~~~~l~~vv~~I~ekAv~e~~f~~~yA~Lc~~L~~~~~~~~~~~~~~~Fr~~Ll~~~q~ 112 (295)
--+|.+-+......|+.+.+.. +...+++.+|+.=+.+|..|-++||-|..+++..-.. -...|.-.+-+
T Consensus 627 sImsaeDyiDAFEklLkL~LK~-~Q~rEI~~VllhC~l~EK~yNpfYa~lA~KfCe~~~~-----~~~tfQF~~WD---- 696 (822)
T KOG2141|consen 627 SIMSAEDYIDAFEKLLKLSLKG-KQEREIARVLLHCCLNEKTYNPFYALLALKFCEFNKN-----LKKTFQFALWD---- 696 (822)
T ss_pred eeecchHHHHHHHHHHhccCCC-cchHHHHHHHHHHHhhhcccchHHHHHHHHHHHHhhh-----hHHHHHHHHHH----
Confidence 3456666666677777776643 3457789999999999999999999999999874211 12223222222
Q ss_pred HHhhhhhhhhhcCCCCCCccHHHHHHHHHhhhhhHHHHHHHHhhcCCCchhHHHH
Q psy8135 113 EFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHT 167 (295)
Q Consensus 113 ~F~~~~~~~~~~~~~~l~~ee~e~~~~~k~r~~g~i~FigeLf~~~~i~~~ii~~ 167 (295)
..+..+ .....|..+.++|+|+|.....++..|+..
T Consensus 697 ----~f~ele---------------~ls~~ri~nLa~l~a~Li~~~~lsLtVLK~ 732 (822)
T KOG2141|consen 697 ----RFKELE---------------QLSLFRISNLAKLLASLISNAVLSLTVLKH 732 (822)
T ss_pred ----HHHHhh---------------hcchhhHhHHHHHHHHHHHhcccceeeeee
Confidence 111111 122345669999999999988887666553
No 17
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=53.36 E-value=1.2e+02 Score=24.45 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=54.9
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHHHHhccCCCCCCCCCCChh----hHHHHHHHHHHhhhhhcCch-hhhHHHHHHHHHH
Q psy8135 146 GNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSE----NLECLCQIMKTCGRILDSEK-GQGLMNQYFSRMK 220 (295)
Q Consensus 146 g~i~FigeLf~~~~i~~~ii~~~l~~Ll~~~~~~~~~~~~e~----~iE~l~~LL~~~G~~L~~~~-~~~~ld~~f~~L~ 220 (295)
+.+.-||++.+.+-.+.+--...|..-+.. +++. .+..+=.+.+.||..+...- ++.+++++...+.
T Consensus 20 ~~ileicD~In~~~~~~k~a~rai~krl~~--------~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~ 91 (139)
T cd03567 20 EAIQAFCEQINKEPEGPQLAVRLLAHKIQS--------PQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVS 91 (139)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhc
Confidence 566678888886544433333333333332 3333 46666677788888887532 2456666555442
Q ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCC
Q psy8135 221 TVQTSTPHLPLRIRFMLQDVEDLRRNNW 248 (295)
Q Consensus 221 ~l~~~~~~~s~rirfmi~~lielR~~~W 248 (295)
.-...+ ..+..++-.|..++...+...
T Consensus 92 ~k~~~~-~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 92 PKYLGS-RTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred cccCCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 111112 468999999999998776444
No 18
>KOG4728|consensus
Probab=42.30 E-value=88 Score=26.37 Aligned_cols=71 Identities=11% Similarity=0.092 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHhhccChhhHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhhcc---cchHHHHHHHHHHHhhC
Q psy8135 20 VQDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHET---KYTSMYARLCKRLTEQA 90 (295)
Q Consensus 20 ~~~~l~~~v~~iLNkLt~~n~~~i~~~l~~~~i~~~~~l~~vv~~I~ekAv~e~---~f~~~yA~Lc~~L~~~~ 90 (295)
..-+..+.+=..+++.-+++|.++.+||.-..-+-.+....|+..+|+..++-. .+.-.++.||.......
T Consensus 58 ~v~~~Lr~~Gd~~e~r~~s~F~t~~~qL~it~~~a~~~f~~V~~~lF~~Gi~wg~~va~~~~~g~la~~~~~~~ 131 (176)
T KOG4728|consen 58 PVHRVLRRAGDEFERRYRSVFKTMLDQLHITPEDAYDSFSQVANELFEDGINWGRRVALLIFGGGLAVHSVQIE 131 (176)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccceeeeehhhHHHHHHHHHhc
Confidence 445555666668999999999999999974433345788999999999998755 34455677877776653
No 19
>PF09733 VEFS-Box: VEFS-Box of polycomb protein; InterPro: IPR019135 The VEFS-Box is found in the the C-terminal region of the VRN2, EMF2, FIS2, and Su(z)12 polycomb proteins. This domain is characterised by an acidic cluster and a tryptophan/methionine-rich sequence, the acidic-W/M domain []. In some proteins the VEFS-Box is associated with a zinc-finger domain located roughly 100 residues towards the N terminus. These proteins are part of the polycomb cluster of proteins which control HOX gene transcription as it functions in heterochromatin-mediated repression [].
Probab=42.06 E-value=36 Score=27.55 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=25.3
Q ss_pred hhhHHHHHHHHhhcCCCchhHHHHHHHHh
Q psy8135 144 MLGNIKFIGELGKHEIVTESILHTCIQEL 172 (295)
Q Consensus 144 ~~g~i~FigeLf~~~~i~~~ii~~~l~~L 172 (295)
+.+...++..|+.+|+++...|..|+..|
T Consensus 112 ~~~f~lHl~~L~d~glLd~~~i~~c~~~l 140 (140)
T PF09733_consen 112 RREFLLHLINLWDFGLLDARTIDECMKIL 140 (140)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHhhC
Confidence 44778999999999999999999998754
No 20
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=38.59 E-value=1.9e+02 Score=22.69 Aligned_cols=89 Identities=10% Similarity=0.104 Sum_probs=56.1
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHHHHhccCCCCCCCCCCChh----hHHHHHHHHHHhhhhhcCchh-hhHHHHHHHHHH
Q psy8135 146 GNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSE----NLECLCQIMKTCGRILDSEKG-QGLMNQYFSRMK 220 (295)
Q Consensus 146 g~i~FigeLf~~~~i~~~ii~~~l~~Ll~~~~~~~~~~~~e~----~iE~l~~LL~~~G~~L~~~~~-~~~ld~~f~~L~ 220 (295)
..+.-|+++.+.+-.+.+-....|+.-|.. +++. .+..+=.+++.||+.+...-+ ++++++ |.
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~--------~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~----l~ 86 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKY--------GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLE----LV 86 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHH----HH
Confidence 567788888887766655555555555554 2333 466666677777887765322 234444 44
Q ss_pred HHHhCCCCCChHHHHHHHHHHHHHhC
Q psy8135 221 TVQTSTPHLPLRIRFMLQDVEDLRRN 246 (295)
Q Consensus 221 ~l~~~~~~~s~rirfmi~~lielR~~ 246 (295)
.+...++..+..++-.+..++.-.+.
T Consensus 87 ~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 87 KIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 44443235689999999999886653
No 21
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=26.84 E-value=3.3e+02 Score=21.79 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=54.2
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHHHHhccCCCCCCCCCCChh--hHHHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHH
Q psy8135 146 GNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSE--NLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQ 223 (295)
Q Consensus 146 g~i~FigeLf~~~~i~~~ii~~~l~~Ll~~~~~~~~~~~~e~--~iE~l~~LL~~~G~~L~~~~~~~~ld~~f~~L~~l~ 223 (295)
+.+.-|+++.+.+-...+-...+|+.-|... ++... .+..+=.+++.||..+...-+ -..+++.|..+.
T Consensus 23 ~~ileicD~In~~~~~~k~a~ral~krl~~~------n~~vql~AL~LLe~~vkNCG~~fh~eva---s~~fl~~l~~l~ 93 (142)
T cd03569 23 ASILEICDMIRSKDVQPKYAMRALKKRLLSK------NPNVQLYALLLLESCVKNCGTHFHDEVA---SREFMDELKDLI 93 (142)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHHCCHHHHHHHh---hHHHHHHHHHHH
Confidence 5677788888866555443333333333320 12222 466677777888888875321 234444555555
Q ss_pred hCCCCCChHHHHHHHHHHHHHhCCC
Q psy8135 224 TSTPHLPLRIRFMLQDVEDLRRNNW 248 (295)
Q Consensus 224 ~~~~~~s~rirfmi~~lielR~~~W 248 (295)
.. ..+++++-.+..++.-.+...
T Consensus 94 ~~--~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 94 KT--TKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred cc--cCCHHHHHHHHHHHHHHHHHh
Confidence 43 457899998888888765433
No 22
>KOG1831|consensus
Probab=26.53 E-value=96 Score=34.23 Aligned_cols=69 Identities=13% Similarity=0.260 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHhhccChhhHHHHHHHHHhhccCCHHHHHHHHHHH-HHHhhhcccchHHHHHHHHHHHhh
Q psy8135 19 NVQDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLI-FEKALHETKYTSMYARLCKRLTEQ 89 (295)
Q Consensus 19 ~~~~~l~~~v~~iLNkLt~~n~~~i~~~l~~~~i~~~~~l~~vv~~I-~ekAv~e~~f~~~yA~Lc~~L~~~ 89 (295)
..-+.+..++--.||.||..||-.-++++.+. -+++...-+..-| ..++..|++|-.+|.++...|...
T Consensus 374 ~~~e~v~dkilF~lNNlsq~N~~qKvdevk~~--ltp~y~~Wfs~YiV~qR~S~E~Nf~~LYskFi~ai~n~ 443 (1591)
T KOG1831|consen 374 GPPEDVVDKILFPLNNLSQLNFNQKVDEVKEI--LTPEYYPWFSQYIVTQRVSKEINFHELYSKFISAIKNS 443 (1591)
T ss_pred CCchhhhhhheeeechHhhhhhHHHHHHHHHH--cChhhHHHHHHHHhhhhhhcccchHHHHHHHHHHHhCc
Confidence 56678899999999999999999999999864 3555555555433 347778999999999999998764
No 23
>PF12311 DUF3632: Protein of unknown function (DUF3632); InterPro: IPR022085 This domain family is found in eukaryotes, and is approximately 170 amino acids in length. There is a conserved ALE sequence motif.
Probab=25.82 E-value=2.8e+02 Score=22.68 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=43.9
Q ss_pred HhhhhhHHHHHHHHhhcCCCch---hHHHHHHHHhccCCCCCCCCCCChhhHHHHHHHHHHhhhhhcC
Q psy8135 141 KQKMLGNIKFIGELGKHEIVTE---SILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDS 205 (295)
Q Consensus 141 k~r~~g~i~FigeLf~~~~i~~---~ii~~~l~~Ll~~~~~~~~~~~~e~~iE~l~~LL~~~G~~L~~ 205 (295)
..++.+...|+|-|...++++. ..-.-.++.-|+...........+..|.+++.-+..+|..|-.
T Consensus 78 ~~~w~Nl~aF~ArL~a~~~~~~~~~~~al~~lr~aLE~~~~~~~~~~~~~~v~aAa~Wi~~aG~~l~~ 145 (184)
T PF12311_consen 78 RQEWINLNAFLARLTAAGIIDWDLSLYALWALRDALEDSEEEPSGPELDARVPAAAQWIIHAGERLYE 145 (184)
T ss_pred HHHHHhHHHHHHHHHhccCCCCchhhhHHHHHHHHHhccccccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999986 3333445555551111000013455799999999999999975
No 24
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=25.30 E-value=3.4e+02 Score=21.43 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=51.8
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHHHHhccCCCCCCCCCCChh----hHHHHHHHHHHhhhhhcCchhhhHHHHHHHHHHH
Q psy8135 146 GNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSE----NLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKT 221 (295)
Q Consensus 146 g~i~FigeLf~~~~i~~~ii~~~l~~Ll~~~~~~~~~~~~e~----~iE~l~~LL~~~G~~L~~~~~~~~ld~~f~~L~~ 221 (295)
+.+.-|+++.+.+-...+-...+|+.=|.. .++. .+..+-.+++.||..+...-+ -..+++.|..
T Consensus 24 ~~~l~icD~i~~~~~~~kea~~~l~krl~~--------~~~~vq~~aL~lld~lvkNcg~~f~~ev~---~~~fl~~l~~ 92 (140)
T PF00790_consen 24 SLILEICDLINSSPDGAKEAARALRKRLKH--------GNPNVQLLALTLLDALVKNCGPRFHREVA---SKEFLDELVK 92 (140)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHHHHHHHTT--------SSHHHHHHHHHHHHHHHHHSHHHHHHHHT---SHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHh---HHHHHHHHHH
Confidence 444568888888755544444444444443 2333 356666777788888875321 1234455555
Q ss_pred HHhCCCCCChH--HHHHHHHHHHHHhCCC
Q psy8135 222 VQTSTPHLPLR--IRFMLQDVEDLRRNNW 248 (295)
Q Consensus 222 l~~~~~~~s~r--irfmi~~lielR~~~W 248 (295)
+..++ ..... +|-.+..++.-.....
T Consensus 93 l~~~~-~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 93 LIKSK-KTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHT-TTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHccC-CCCchhHHHHHHHHHHHHHHHHH
Confidence 55443 22333 8888888887665333
No 25
>KOG2412|consensus
Probab=23.00 E-value=7.8e+02 Score=24.69 Aligned_cols=167 Identities=14% Similarity=0.159 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHhhh----cccchHHHHHHHHHHHhhCCCCCCCCchhhHHHHHHHHHHHH--H----hhhhh-----
Q psy8135 55 SKILKGVILLIFEKALH----ETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNE--F----ENRSR----- 119 (295)
Q Consensus 55 ~~~l~~vv~~I~ekAv~----e~~f~~~yA~Lc~~L~~~~~~~~~~~~~~~Fr~~Ll~~~q~~--F----~~~~~----- 119 (295)
+.++..++..++.++-+ .|.-+.-.|.+|.+|...+|. |..+|+.++++. | .-...
T Consensus 381 ~~~~~~iaka~V~Q~Etev~~~PeaAfPla~V~l~i~~q~Pd---------v~dlllA~l~KkCP~~VPf~~~~~~Eq~~ 451 (591)
T KOG2412|consen 381 DWCLNFIAKAFVKQAETEVASKPEAAFPLAKVILYIWSQFPD---------VGDLLLARLHKKCPYVVPFHIVNSTEQYQ 451 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhCch---------HHHHHHHHHHhcCCccccccccCcHHHHH
Confidence 56777788888877733 444455589999999998764 445566555552 1 10000
Q ss_pred hhhhcCCCCCCccHHHHHHHHHhhhhhHHHHHHHHhhcCC-C---------chhHHHHHHHHhccCCCCCCCCCCChhhH
Q psy8135 120 ATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEI-V---------TESILHTCIQELLPKNRKVQTNKDVSENL 189 (295)
Q Consensus 120 ~~~~~~~~~l~~ee~e~~~~~k~r~~g~i~FigeLf~~~~-i---------~~~ii~~~l~~Ll~~~~~~~~~~~~e~~i 189 (295)
..-++.. .+...-++...+-.|..|++++-|-+..... . +-..--.++..+++.. . ..+..-
T Consensus 452 k~mGyk~--~d~nk~Eqnd~YleRm~Gi~rLYAAIi~l~~p~~~~~~~hpf~i~~gW~wLA~iln~~---p---~~~~ta 523 (591)
T KOG2412|consen 452 KMMGYKA--WDSNKWEQNDAYLERMDGIMRLYAAIIQLDIPVGNATNVHPFGINHGWAWLARILNKI---P---LLDTTA 523 (591)
T ss_pred Hhhcccc--cccccccccchHHHHhHhHHHHHHHHHHhcccccCCCCCCcchhhcccHHHHHHhCCC---C---ccchHH
Confidence 0001100 0110111112333567799999998887543 1 1122234566666651 1 123445
Q ss_pred HHHHHHHHHhhhhhcCchhhhH-------HHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy8135 190 ECLCQIMKTCGRILDSEKGQGL-------MNQYFSRMKTVQTSTPHLPLRIRFMLQDVE 241 (295)
Q Consensus 190 E~l~~LL~~~G~~L~~~~~~~~-------ld~~f~~L~~l~~~~~~~s~rirfmi~~li 241 (295)
-.+..+|.++|-.|-..-+..+ -+.|+.++......+ +.|+|.++..-+
T Consensus 524 tll~s~Lq~aG~~L~q~Yg~Qf~Klli~i~E~y~~r~~a~~~~g---~~rl~ill~~~l 579 (591)
T KOG2412|consen 524 TLLNSFLQTAGFGLLQRYGSQFLKLLILIREHYLPRLAAKKDTG---DLRLRILLEAWL 579 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---chHHHHHHHHHH
Confidence 5677888899988876333332 244555554333222 379998888776
No 26
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=22.99 E-value=2e+02 Score=20.87 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=16.3
Q ss_pred CcchHHHHHHHHHHHhhc-cChhhHHHHHHHHHh
Q psy8135 17 PENVQDATFRKVRELLNK-LTPEKFDKLSDDLLQ 49 (295)
Q Consensus 17 e~~~~~~l~~~v~~iLNk-Lt~~n~~~i~~~l~~ 49 (295)
++.....+.++|-+++|+ +|++..+.++..+..
T Consensus 29 dE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~ 62 (79)
T PF14069_consen 29 DEKKVRQLIKQVSQIANKPVSKEQEDQIVQAIIN 62 (79)
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 344444555555555553 445555555555443
No 27
>KOG2171|consensus
Probab=22.95 E-value=1e+03 Score=26.05 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Q psy8135 187 ENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDVEDL 243 (295)
Q Consensus 187 ~~iE~l~~LL~~~G~~L~~~~~~~~ld~~f~~L~~l~~~~~~~s~rirfmi~~liel 243 (295)
.-++++..++.+.++.+. +.+..+++..-.++.++ .+...+|.+...++=-
T Consensus 225 ~~l~~l~El~e~~pk~l~-----~~l~~ii~~~l~Ia~n~-~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 225 SALEALIELLESEPKLLR-----PHLSQIIQFSLEIAKNK-ELENSIRHLALEFLVS 275 (1075)
T ss_pred HHHHHHHHHHhhchHHHH-----HHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHHH
Confidence 358999999999999886 36888888888888887 7888888877666543
No 28
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=21.92 E-value=3.3e+02 Score=22.76 Aligned_cols=48 Identities=27% Similarity=0.270 Sum_probs=38.6
Q ss_pred ccCCCCccccCC----CCCcchHHHHHHHHHHHhhccChhhHHHHHHHHHhh
Q psy8135 3 RWIPPSALRRDA----LTPENVQDATFRKVRELLNKLTPEKFDKLSDDLLQL 50 (295)
Q Consensus 3 ~~~p~~~~~~~~----~~e~~~~~~l~~~v~~iLNkLt~~n~~~i~~~l~~~ 50 (295)
..+||.+.+... ..+++=.+...+.+-.++-..||+|.+...+.|+.+
T Consensus 48 vivPp~~~~~~~vs~~~as~~Yl~~m~~~~~~L~lNvtP~~v~~~~~~Ll~~ 99 (187)
T PF05309_consen 48 VIVPPTLNKPFWVSGNSASAEYLEQMGRYVAQLLLNVTPENVDFQFDSLLPY 99 (187)
T ss_pred EEECCcccccEEEECCcCCHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh
Confidence 368999976551 224566788889999999999999999999999875
No 29
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=21.85 E-value=3.3e+02 Score=20.57 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=28.8
Q ss_pred HHHHhhccChhhHHHHHHHHHhhccCCHHHHHHHHHHHHHHhh
Q psy8135 28 VRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKAL 70 (295)
Q Consensus 28 v~~iLNkLt~~n~~~i~~~l~~~~i~~~~~l~~vv~~I~ekAv 70 (295)
.-.+|..|+++.+..++..+..+.--+.+.+..|++.+++...
T Consensus 23 Aa~vlk~l~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF~~~~~ 65 (108)
T PF14842_consen 23 AAEVLKHLDEEEIERISREMAKLGSVSPEEVEEVLEEFYDEIR 65 (108)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHT-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH
Confidence 3457888999999999998888766677778888877776443
No 30
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=21.77 E-value=4e+02 Score=20.93 Aligned_cols=91 Identities=11% Similarity=0.069 Sum_probs=53.0
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHHHHhccCCCCCCCCCCChh----hHHHHHHHHHHhhhhhcCchhhhHHHHHHHHHHH
Q psy8135 146 GNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSE----NLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKT 221 (295)
Q Consensus 146 g~i~FigeLf~~~~i~~~ii~~~l~~Ll~~~~~~~~~~~~e~----~iE~l~~LL~~~G~~L~~~~~~~~ld~~f~~L~~ 221 (295)
+.+.-|+++.+.+-.+.+-...+|+.=|.. +++. .+..+=.+++.||..+...- .-..+++.|..
T Consensus 19 ~~~l~icD~i~~~~~~~k~a~r~l~krl~~--------~n~~v~l~AL~lLe~~vkNcg~~f~~ev---~s~~fl~~L~~ 87 (133)
T smart00288 19 ELILEICDLINSTPDGPKDAVRLLKKRLNN--------KNPHVALLALTLLDACVKNCGSKFHLEV---ASKEFLNELVK 87 (133)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHHHCCHHHHHHH---HhHHHHHHHHH
Confidence 556677899887755555444444444443 2333 46666677778888886532 12334455555
Q ss_pred HHhCCCCCChHHHHHHHHHHHHHhCCC
Q psy8135 222 VQTSTPHLPLRIRFMLQDVEDLRRNNW 248 (295)
Q Consensus 222 l~~~~~~~s~rirfmi~~lielR~~~W 248 (295)
+...+ ...+.++-.+..++.-.....
T Consensus 88 l~~~~-~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 88 LIKPK-YPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHcCC-CCcHHHHHHHHHHHHHHHHHH
Confidence 55554 223448888888777655433
No 31
>PF13250 DUF4041: Domain of unknown function (DUF4041)
Probab=21.72 E-value=1.1e+02 Score=20.54 Aligned_cols=24 Identities=8% Similarity=0.232 Sum_probs=20.4
Q ss_pred HHHHHHhhccChhhHHHHHHHHHh
Q psy8135 26 RKVRELLNKLTPEKFDKLSDDLLQ 49 (295)
Q Consensus 26 ~~v~~iLNkLt~~n~~~i~~~l~~ 49 (295)
.+..+++++++..|++.+.+.|..
T Consensus 9 ~EcD~~i~kv~~~Ni~~~~~rI~k 32 (56)
T PF13250_consen 9 GECDAAISKVKYNNIDTMEKRIEK 32 (56)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHH
Confidence 456779999999999999988875
No 32
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=21.05 E-value=72 Score=23.21 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=19.0
Q ss_pred cchHHHHHHHHHHHhhccChhhH
Q psy8135 18 ENVQDATFRKVRELLNKLTPEKF 40 (295)
Q Consensus 18 ~~~~~~l~~~v~~iLNkLt~~n~ 40 (295)
+..+++--+.|+++|+||.++.+
T Consensus 54 et~kqRrE~EV~~LLeKippd~I 76 (80)
T PF08149_consen 54 ETKKQRREREVRSLLEKIPPDMI 76 (80)
T ss_pred cchhHHhHHHHHHHHHhCCccce
Confidence 34677778899999999998865
No 33
>PF14658 EF-hand_9: EF-hand domain
Probab=20.25 E-value=2.1e+02 Score=19.98 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=37.6
Q ss_pred cCCCchhHHHHHHHHhccCCCCCCCCCCChhhHHHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHH
Q psy8135 157 HEIVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTV 222 (295)
Q Consensus 157 ~~~i~~~ii~~~l~~Ll~~~~~~~~~~~~e~~iE~l~~LL~~~G~~L~~~~~~~~ld~~f~~L~~l 222 (295)
-|.|+.+-|.++++.+-.. .|.+..++-++..+.--|. + +.-.++.++..|+.+
T Consensus 12 tG~V~v~~l~~~Lra~~~~-------~p~e~~Lq~l~~elDP~g~--~---~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 12 TGRVPVSDLITYLRAVTGR-------SPEESELQDLINELDPEGR--D---GSVNFDTFLAIMRDW 65 (66)
T ss_pred CceEeHHHHHHHHHHHcCC-------CCcHHHHHHHHHHhCCCCC--C---ceEeHHHHHHHHHHh
Confidence 3778888888888887773 2788889888888755554 1 223467777777654
Done!