RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8135
(295 letters)
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human
(Homo sapiens) [TaxId: 9606]}
Length = 243
Score = 173 bits (439), Expect = 1e-53
Identities = 95/249 (38%), Positives = 142/249 (57%), Gaps = 25/249 (10%)
Query: 17 PENVQ-DATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKY 75
PEN++ FRKVR +LNKLTP+ F++L + L +++ + LKGVI L+FEKA+ E +
Sbjct: 3 PENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSF 62
Query: 76 TSMYARLCKRLTEQ-APNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGN-------- 126
+ YA +C+ L P + P + F+K LL C+ EFE + F
Sbjct: 63 SVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAA 122
Query: 127 ------LPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQ 180
L + E+ + A+++ +GNIKFIGEL K +++TE+I+H C+ +LL
Sbjct: 123 SAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLL------- 175
Query: 181 TNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDV 240
E+LECLC+++ T G+ LD EK + M+QYF++M+ + RIRFMLQDV
Sbjct: 176 -KNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKE-RKTSSRIRFMLQDV 233
Query: 241 EDLRRNNWV 249
DLR NWV
Sbjct: 234 IDLRLCNWV 242
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 129 bits (325), Expect = 1e-36
Identities = 36/259 (13%), Positives = 79/259 (30%), Gaps = 42/259 (16%)
Query: 25 FRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCK 84
RK+ L L+ +K+ + +L ++ VI + + A L
Sbjct: 8 VRKL--LYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLA 65
Query: 85 RLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKM 144
L + H++ + E + Q+
Sbjct: 66 GLVLYQEDVG---------IHVVDGVLEDIRLG---------------MEVNQPKFNQRR 101
Query: 145 LGNIKFIGELGKHEIVTESILHTCIQELL------PKNRKVQTNKDVSENLECLCQIMKT 198
+ + KF+GEL + +V +++ + + + + +C I+ T
Sbjct: 102 ISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDT 161
Query: 199 CGRILDSEKGQGLMNQYFS---------RMKTVQTSTPHLPLRIRFMLQDVEDLRRNNWV 249
CG+ D + ++ + + V T P+ I +M+ D +L R
Sbjct: 162 CGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIK 221
Query: 250 PRQANNPEKPVPINQIIEE 268
+ E + + E
Sbjct: 222 LCN-SLEESIRQVQDLERE 239
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 262
Score = 39.1 bits (91), Expect = 3e-04
Identities = 33/275 (12%), Positives = 77/275 (28%), Gaps = 51/275 (18%)
Query: 27 KVRELLNKLTPEKFDKLSDDLLQL------DLNSSKILKGVILLIFEKALHETKYTSMYA 80
+ L+ K+ + L +L L DL + K ++ L+ A + ++Y
Sbjct: 2 HLESLICKVGEKSACSLESNLEGLAGVLEADLPNYK--SKILRLLCTVARLLPEKLTIYT 59
Query: 81 RLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLA 140
L L + NF + + E +
Sbjct: 60 TLVGLLNARNYNF---------GGEFVEAMIRQL------------------KESLKANN 92
Query: 141 KQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSENL-ECLCQIMKTC 199
+ + ++F+ +L ++ + + + ++ + + +
Sbjct: 93 YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV 152
Query: 200 GRILDSEKGQG---LMNQYFSRMKTVQT-----------STPHLPL-RIRFMLQDVEDLR 244
G+ L +K + S +K Q PH + + ++ L+
Sbjct: 153 GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK 212
Query: 245 RNNWVPRQANNPEKPVPINQIIEEDHDPVNFILPH 279
++ W R P H+ F P
Sbjct: 213 KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPP 247
>d1gc5a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon
Thermococcus litoralis [TaxId: 2265]}
Length = 467
Score = 33.3 bits (76), Expect = 0.031
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 208 GQ-GLMNQYFSRM--KTVQTSTPHLPLRIRFMLQDVEDLRRNNWVPRQANNPEKPVPINQ 264
GQ G+M + P P + D +VP N K V
Sbjct: 120 GQAGIMANLLGGVYRIPTIVHVPQNPKLQAELFVDG-----PIYVPVFEGNKLKLVHPKD 174
Query: 265 IIEEDHDPVNFIL 277
I E+ + +++I
Sbjct: 175 AIAEEEELIHYIY 187
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4
{Human (Homo sapiens) [TaxId: 9606]}
Length = 279
Score = 28.3 bits (62), Expect = 1.1
Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 12/133 (9%)
Query: 56 KILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFE 115
+L + + E+ E Y L K+ + P + P+ + ++ + + E
Sbjct: 14 DLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQI-LQEVN 72
Query: 116 NRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPK 175
+ + E L+ + L K+ E+ + + Q+L
Sbjct: 73 DFAGQRELVAE-----------NLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENG 121
Query: 176 NRKVQTNKDVSEN 188
++++ +K E
Sbjct: 122 FKQLENSKRKFER 134
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 26.7 bits (58), Expect = 3.6
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 53 NSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKN 112
IL+ I + E+ E Y L K+ + + E + T K + N
Sbjct: 20 WGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISN-LN 78
Query: 113 EFENRSRATEAFGN 126
E + + E
Sbjct: 79 EMNDYAGQHEVISE 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,111,766
Number of extensions: 52934
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 10
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)