BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8137
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97
          Length = 364

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++ C++ +FPKGMLLR+F + Y++      AF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct: 302 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 361


>pdb|3D3M|A Chain A, The Crystal Structure Of The C-Terminal Region Of Death
           Associated Protein 5(Dap5)
 pdb|3D3M|B Chain B, The Crystal Structure Of The C-Terminal Region Of Death
           Associated Protein 5(Dap5)
          Length = 168

 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLXXXXXXAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
           ++ C++ +FPKGMLLR+F + Y++      AF  W+E+I+  +PGKG+ALFQVN WL WL
Sbjct: 106 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 165


>pdb|3HHS|A Chain A, Crystal Structure Of Manduca Sexta Prophenoloxidase
          Length = 694

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 46  FSKWRENISDAYPGKGEALFQVNAW 70
           FS WRE I +AY  K ++L     W
Sbjct: 266 FSDWREPIPEAYYPKLDSLTSARGW 290


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.502 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,999,236
Number of Sequences: 62578
Number of extensions: 56321
Number of successful extensions: 94
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 3
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)