Query psy8137
Match_columns 88
No_of_seqs 115 out of 526
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:31:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ful_A EIF-5, eukaryotic trans 99.9 2.1E-26 7.1E-31 159.4 6.2 84 5-88 84-171 (177)
2 3jui_A Translation initiation 99.9 5.3E-26 1.8E-30 157.5 5.0 81 5-85 101-182 (182)
3 1paq_A Translation initiation 99.9 3E-25 1E-29 154.2 8.2 82 4-86 106-189 (189)
4 2iu1_A EIF5, eukaryotic transl 99.9 6E-25 2E-29 155.4 8.0 81 5-85 78-162 (208)
5 3d3m_A Eukaryotic translation 99.9 4.3E-23 1.5E-27 140.9 9.0 73 5-77 96-168 (168)
6 3l6a_A Eukaryotic translation 99.8 1.1E-20 3.8E-25 142.0 8.8 72 6-77 293-364 (364)
7 1ug3_A EIF4GI, eukaryotic prot 99.3 1.7E-12 6E-17 95.9 5.3 49 5-53 287-335 (339)
8 3c5t_B Exendin-4, exenatide; l 85.5 0.44 1.5E-05 23.8 1.6 14 64-77 8-21 (31)
9 2g49_C Glucagon preproprotein; 75.2 1.6 5.5E-05 21.4 1.6 13 64-76 16-28 (29)
10 1t5q_A Gastric inhibitory poly 74.2 2 6.8E-05 21.2 1.8 13 64-76 16-28 (30)
11 2l63_A GLP-2, glucagon-like pe 74.1 2 6.7E-05 21.6 1.8 14 64-77 16-29 (33)
12 1jrj_A Exendin-4; Trp-CAGE, GL 72.9 1.9 6.5E-05 22.5 1.6 14 64-77 16-29 (39)
13 3iol_B Glucagon; receptor-liga 72.5 2.3 7.8E-05 21.0 1.8 13 64-76 16-28 (31)
14 2b4n_A Gastric inhibitory poly 70.2 2.4 8.1E-05 22.5 1.7 17 63-79 15-31 (42)
15 2rrh_A VIP peptides; peptide h 57.7 6.7 0.00023 18.9 1.8 13 64-76 16-28 (29)
16 1wlx_A Alpha-actinin 4; three- 40.0 8.9 0.0003 24.7 0.8 18 63-80 17-34 (129)
17 3tq7_B Microtubule-associated 38.6 23 0.00077 21.1 2.4 30 10-39 30-60 (82)
18 2csf_A DNA-binding protein SAT 37.8 25 0.00086 21.8 2.6 68 7-80 19-86 (101)
19 1wty_A Hypothetical protein TT 37.2 34 0.0012 20.8 3.2 42 10-53 38-79 (119)
20 2igp_A Retinoblastoma-associat 36.8 55 0.0019 20.3 4.2 33 6-38 15-59 (120)
21 2d2p_A Pituitary adenylate cyc 36.0 20 0.00069 18.4 1.7 11 65-75 17-27 (39)
22 1wwp_A Hypothetical protein TT 35.7 57 0.002 19.7 4.1 44 10-53 37-81 (119)
23 3mtu_A Tropomyosin alpha-1 cha 34.5 41 0.0014 19.3 3.1 30 10-39 38-68 (75)
24 1ayz_A UBC2, ubiquitin-conjuga 31.7 1.1E+02 0.0036 19.9 6.2 10 10-19 105-114 (169)
25 3brj_A Mannitol operon repress 27.2 60 0.002 21.9 3.3 34 12-46 55-88 (175)
26 1mw9_X DNA topoisomerase I; de 25.1 75 0.0026 24.9 4.0 32 10-41 285-317 (592)
27 2ve7_A Kinetochore protein HEC 23.4 1E+02 0.0035 22.1 4.2 37 2-38 4-57 (315)
28 1jog_A Hypothetical protein HI 22.8 93 0.0032 19.7 3.5 42 10-53 57-103 (146)
29 2hkt_A Putative transcriptiona 21.1 57 0.0019 21.9 2.2 34 12-46 55-88 (172)
30 2nn4_A Hypothetical protein YQ 20.9 62 0.0021 18.7 2.1 37 11-47 5-50 (72)
31 1h2v_C 80 kDa nuclear CAP bind 20.5 1.2E+02 0.004 24.6 4.3 44 6-52 563-606 (771)
32 1i7d_A DNA topoisomerase III; 20.0 1E+02 0.0034 24.6 3.8 33 9-41 292-326 (659)
No 1
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.1e-26 Score=159.40 Aligned_cols=84 Identities=23% Similarity=0.305 Sum_probs=64.7
Q ss_pred CChHHHHHHHHHHHh-hcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCC---CcHHHHHHHHHHHHHHhcccccC
Q psy8137 5 PNTPPTATPPELFCH-SLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAY---PGKGEALFQVNAWLNWLAEAESE 80 (88)
Q Consensus 5 ~~~~~~L~alq~~c~-~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~---~~~~~~~~~~~~fv~WL~eaeeE 80 (88)
..|+++|+|||.||. ++..+.+.|+.||+.||+.|||+|++|++||+++++++ .+..++|++++|||+||++||||
T Consensus 84 ~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~LYd~DIleEeaIl~W~~~~skk~v~~e~~~~v~~~~~pFI~WL~eAEEE 163 (177)
T 2ful_A 84 EYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAESD 163 (177)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHHCCCSSSSCHHHHHHHHHTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccCChHHHHHHHHHHHHHHHHHHccccc
Confidence 469999999999995 66666789999999999999999999999998876433 24456899999999999999998
Q ss_pred cccccccC
Q psy8137 81 EEEEEEEN 88 (88)
Q Consensus 81 s~ee~ed~ 88 (88)
||+++||+
T Consensus 164 seeeeee~ 171 (177)
T 2ful_A 164 DDEEDDEL 171 (177)
T ss_dssp -------C
T ss_pred cccccccc
Confidence 88776653
No 2
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=99.92 E-value=5.3e-26 Score=157.47 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=65.4
Q ss_pred CChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcHH-HHHHHHHHHHHHhcccccCccc
Q psy8137 5 PNTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKG-EALFQVNAWLNWLAEAESEEEE 83 (88)
Q Consensus 5 ~~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~~-~~~~~~~~fv~WL~eaeeEs~e 83 (88)
+.|+++|+|||.||.+...+.+.|+.||+.||+.|||+|++|++||++.++...|+. .+|++++|||+||++||||||+
T Consensus 101 ~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd~DileEe~Il~W~~~~~~~~~~~~~~vr~~~~~Fi~WL~eAEEEs~e 180 (182)
T 3jui_A 101 ADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSE 180 (182)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHHTTSSCHHHHHHHHTCCC--CHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhcchhchHHHHHHHHcCCccccchHHHHHHHHHHHHHHHhccCcccCC
Confidence 469999999999999877778899999999999999999999999998775543443 3789999999999999999876
Q ss_pred cc
Q psy8137 84 EE 85 (88)
Q Consensus 84 e~ 85 (88)
||
T Consensus 181 e~ 182 (182)
T 3jui_A 181 DD 182 (182)
T ss_dssp --
T ss_pred CC
Confidence 43
No 3
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=99.92 E-value=3e-25 Score=154.22 Aligned_cols=82 Identities=27% Similarity=0.356 Sum_probs=63.2
Q ss_pred CCChHHHHHHHHHHHh--hcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcHHHHHHHHHHHHHHhcccccCc
Q psy8137 4 GPNTPPTATPPELFCH--SLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAESEE 81 (88)
Q Consensus 4 ~~~~~~~L~alq~~c~--~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~~~~~~~~~~fv~WL~eaeeEs 81 (88)
.+.|+++|+|||.||. +.....+.|+.||+.||+.|||+|++|++||++++....+ .+++++++|||+||++|||||
T Consensus 106 ~~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~DileEe~il~W~~~~~~~~~~-~~v~~~~~~Fi~WL~eAEeEs 184 (189)
T 1paq_A 106 EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRY-DEVKKLTVKWVEWLQNADEES 184 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCCGGG-HHHHHHHHHHHHHHHHTC---
T ss_pred cHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccccccHHHHHHHhCCCchHHH-HHHHHHHHHHHHHHhccCccc
Confidence 3569999999999999 5554567999999999999999999999999887532222 378999999999999999988
Q ss_pred ccccc
Q psy8137 82 EEEEE 86 (88)
Q Consensus 82 ~ee~e 86 (88)
|+|||
T Consensus 185 ~~eee 189 (189)
T 1paq_A 185 SSEEE 189 (189)
T ss_dssp -----
T ss_pred cccCC
Confidence 76543
No 4
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=99.91 E-value=6e-25 Score=155.42 Aligned_cols=81 Identities=22% Similarity=0.360 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHHHhhcC-CChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcH--H-HHHHHHHHHHHHhcccccC
Q psy8137 5 PNTPPTATPPELFCHSLH-FPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGK--G-EALFQVNAWLNWLAEAESE 80 (88)
Q Consensus 5 ~~~~~~L~alq~~c~~~~-~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~--~-~~~~~~~~fv~WL~eaeeE 80 (88)
+.|+.+|+|||.||.... .+.+.|+.||+.||+.|||+|++|++||++++++++++ . ++|++++|||+||++||||
T Consensus 78 ~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~LYD~DIleEEaIl~W~~~~s~~~~~~e~~k~v~~~~~pFI~WL~EAEEE 157 (208)
T 2iu1_A 78 KAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEE 157 (208)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHHHHTTSSCHHHHHHHHHSCCCSSSCHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccchhhhHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHccccc
Confidence 459999999999985532 35679999999999999999999999999877654433 2 4799999999999999998
Q ss_pred ccccc
Q psy8137 81 EEEEE 85 (88)
Q Consensus 81 s~ee~ 85 (88)
||+++
T Consensus 158 s~eee 162 (208)
T 2iu1_A 158 SSGGE 162 (208)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 76533
No 5
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=99.89 E-value=4.3e-23 Score=140.93 Aligned_cols=73 Identities=51% Similarity=1.003 Sum_probs=67.6
Q ss_pred CChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcHHHHHHHHHHHHHHhccc
Q psy8137 5 PNTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEA 77 (88)
Q Consensus 5 ~~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~~~~~~~~~~fv~WL~ea 77 (88)
..|++||+|||.||.++.++.+.|+.||+.||+.|||+||+|++||++++++.+|+.+++++++|||+||++|
T Consensus 96 ~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd~DvleEe~il~W~~~~~~~~~~~~~~~~~~~~Fi~WL~eA 168 (168)
T 3d3m_A 96 DLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETA 168 (168)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCSCCCTTHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhcchhhHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHhcC
Confidence 4699999999999999888999999999999999999999999999987655667888999999999999986
No 6
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=142.01 Aligned_cols=72 Identities=51% Similarity=1.020 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcHHHHHHHHHHHHHHhccc
Q psy8137 6 NTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEA 77 (88)
Q Consensus 6 ~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~~~~~~~~~~fv~WL~ea 77 (88)
.|++||+|||.||.+.++|.+.++.||+.||+.|||+||+|++||++.++..+|+++++++++|||+||+||
T Consensus 293 ~q~~~L~alq~~~~~~~~~~~~l~~il~~LYd~DileEe~il~W~~~~~~~~~~k~~~~~~~~~Fi~WL~eA 364 (364)
T 3l6a_A 293 LQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETA 364 (364)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCCCSSTTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhcC
Confidence 499999999999999888888999999999999999999999999988766778899999999999999986
No 7
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.31 E-value=1.7e-12 Score=95.92 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=45.1
Q ss_pred CChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhcc
Q psy8137 5 PNTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENI 53 (88)
Q Consensus 5 ~~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~ 53 (88)
..|++||+|||.||+++.+|+++|..+++.||+.|||+||+|++||++.
T Consensus 287 ~~ql~~L~alQ~~~~~~~~~~~~l~~~~~~LYd~dVi~Eeail~W~~~~ 335 (339)
T 1ug3_A 287 QKELQALYALQALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSWESSK 335 (339)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHhCcchhhHHHHHHHHhcC
Confidence 4689999999999999999999999999999999999999999999763
No 8
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=85.49 E-value=0.44 Score=23.81 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhccc
Q psy8137 64 LFQVNAWLNWLAEA 77 (88)
Q Consensus 64 ~~~~~~fv~WL~ea 77 (88)
-++++.||.||.+.
T Consensus 8 ~~aakdFv~WL~ng 21 (31)
T 3c5t_B 8 EEAVRLFIEWLKNG 21 (31)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 34588999999854
No 9
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=75.21 E-value=1.6 Score=21.36 Aligned_cols=13 Identities=15% Similarity=0.544 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhcc
Q psy8137 64 LFQVNAWLNWLAE 76 (88)
Q Consensus 64 ~~~~~~fv~WL~e 76 (88)
..+++.||+||..
T Consensus 16 ~~aak~fv~wL~~ 28 (29)
T 2g49_C 16 SRRAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHHHhc
Confidence 3458899999974
No 10
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=74.17 E-value=2 Score=21.15 Aligned_cols=13 Identities=23% Similarity=0.647 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhcc
Q psy8137 64 LFQVNAWLNWLAE 76 (88)
Q Consensus 64 ~~~~~~fv~WL~e 76 (88)
..+++.||+||..
T Consensus 16 ~~~ak~fv~wLl~ 28 (30)
T 1t5q_A 16 KIHQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 4458899999964
No 11
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=74.11 E-value=2 Score=21.65 Aligned_cols=14 Identities=21% Similarity=0.686 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhccc
Q psy8137 64 LFQVNAWLNWLAEA 77 (88)
Q Consensus 64 ~~~~~~fv~WL~ea 77 (88)
..+++.||+||...
T Consensus 16 ~~aak~fl~wL~~~ 29 (33)
T 2l63_A 16 NLAARDFINWLIQT 29 (33)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 45588999999753
No 12
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=72.85 E-value=1.9 Score=22.50 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhccc
Q psy8137 64 LFQVNAWLNWLAEA 77 (88)
Q Consensus 64 ~~~~~~fv~WL~ea 77 (88)
..+++.||+||...
T Consensus 16 ~~aak~fv~wL~~~ 29 (39)
T 1jrj_A 16 EEAVRLFIEWLKNG 29 (39)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 44588999999853
No 13
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=72.52 E-value=2.3 Score=20.97 Aligned_cols=13 Identities=15% Similarity=0.496 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhcc
Q psy8137 64 LFQVNAWLNWLAE 76 (88)
Q Consensus 64 ~~~~~~fv~WL~e 76 (88)
.+.++.||+||..
T Consensus 16 ~~~ak~Fv~wL~~ 28 (31)
T 3iol_B 16 GQAAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc
Confidence 4568899999964
No 14
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=70.16 E-value=2.4 Score=22.49 Aligned_cols=17 Identities=18% Similarity=0.517 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhccccc
Q psy8137 63 ALFQVNAWLNWLAEAES 79 (88)
Q Consensus 63 ~~~~~~~fv~WL~eaee 79 (88)
-.++++.||+||...-.
T Consensus 15 d~~~akdFv~WL~~~k~ 31 (42)
T 2b4n_A 15 DKIHQQDFVNWLLAQKG 31 (42)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 35568899999986543
No 15
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=57.67 E-value=6.7 Score=18.93 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcc
Q psy8137 64 LFQVNAWLNWLAE 76 (88)
Q Consensus 64 ~~~~~~fv~WL~e 76 (88)
..+++.||.||..
T Consensus 16 ~~~ak~fl~~l~~ 28 (29)
T 2rrh_A 16 QMAVKKYLNSILN 28 (29)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3458899999963
No 16
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=40.03 E-value=8.9 Score=24.71 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhcccccC
Q psy8137 63 ALFQVNAWLNWLAEAESE 80 (88)
Q Consensus 63 ~~~~~~~fv~WL~eaeeE 80 (88)
+.+++.||=.|++.|+|+
T Consensus 17 FAKrAa~fNnW~e~A~Ed 34 (129)
T 1wlx_A 17 YAKRAAPFNNWMESAMED 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhHHHH
Confidence 678899999999999875
No 17
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=38.59 E-value=23 Score=21.08 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhcCCC-hHHHHHHHHHHHhhh
Q psy8137 10 TATPPELFCHSLHFP-KGMLLRWFNNLYNLE 39 (88)
Q Consensus 10 ~L~alq~~c~~~~~~-~~~~~~il~~LYd~D 39 (88)
-|..|+.+|...... ..++..|+..||..+
T Consensus 30 KLRdIEiLcQ~~e~~~~~~~~~I~~ILYaTe 60 (82)
T 3tq7_B 30 KLRDIELICQEHESENSPVISGIIGILYATE 60 (82)
T ss_dssp HHHHHHHHHHTC-----CHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHhccc
Confidence 377889999885532 247788999999864
No 18
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=37.76 E-value=25 Score=21.79 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhccCCCCCcHHHHHHHHHHHHHHhcccccC
Q psy8137 7 TPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAESE 80 (88)
Q Consensus 7 ~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~~~~~~~~~~~~~~~~~fv~WL~eaeeE 80 (88)
+.++-..|..-......+..+|...+-.- -.+.+++ |++|..++.... ..+...+..+.+||+..+++
T Consensus 19 Tk~i~~~I~~ELK~~~IsQa~FAk~vlnR-sQGtLSe--lLR~~enPkP~~---~~lW~~Lk~m~nWL~Lpe~e 86 (101)
T 2csf_A 19 TAAIYDEIQQEMKRAKVSQALFAKVAANK-SQGWLCE--LLRWKENPSPEN---RTLWENLCTIRRFLNLPQHE 86 (101)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHTCC-CHHHHHH--HHHHCCCCCTTC---HHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHh-chhHHHH--HHhcccCCCcch---hhHHHHHHHHHHHHcCCHHH
Confidence 34444555555555555566665544211 1134444 789998876432 44666677899999987753
No 19
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=37.19 E-value=34 Score=20.75 Aligned_cols=42 Identities=10% Similarity=0.142 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhcc
Q psy8137 10 TATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENI 53 (88)
Q Consensus 10 ~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~ 53 (88)
++..+..++...........-+++.++..++|+++ -.|....
T Consensus 38 awk~~k~~l~~~g~~~~s~rd~~r~a~~~glI~~~--~~w~~m~ 79 (119)
T 1wty_A 38 AWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPED--PFWLEML 79 (119)
T ss_dssp HHHHHHHHHHHHTCCCSSHHHHHHHHHHHTSSCCC--HHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCcH--HHHHHHH
Confidence 34445555544332233567799999999999888 6788653
No 20
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=36.85 E-value=55 Score=20.34 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHHhhcCCC------------hHHHHHHHHHHHhh
Q psy8137 6 NTPPTATPPELFCHSLHFP------------KGMLLRWFNNLYNL 38 (88)
Q Consensus 6 ~~~~~L~alq~~c~~~~~~------------~~~~~~il~~LYd~ 38 (88)
-|-.|+..|..|...+.++ .+.|..|++.||..
T Consensus 15 ~q~~~~~~i~~fL~~~~~~~~is~k~L~~Pt~kdF~~if~fL~~~ 59 (120)
T 2igp_A 15 FIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGF 59 (120)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCCTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHHHHh
Confidence 5788999999999875432 24788999988863
No 21
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=35.99 E-value=20 Score=18.41 Aligned_cols=11 Identities=18% Similarity=0.305 Sum_probs=9.0
Q ss_pred HHHHHHHHHhc
Q psy8137 65 FQVNAWLNWLA 75 (88)
Q Consensus 65 ~~~~~fv~WL~ 75 (88)
.+++.||.||.
T Consensus 17 ~~ak~fl~~l~ 27 (39)
T 2d2p_A 17 MAVKKYLAAVL 27 (39)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 35889999996
No 22
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=35.72 E-value=57 Score=19.74 Aligned_cols=44 Identities=2% Similarity=-0.123 Sum_probs=29.2
Q ss_pred HHHHHHHHH-hhcCCChHHHHHHHHHHHhhhccChhHHHHHHhcc
Q psy8137 10 TATPPELFC-HSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENI 53 (88)
Q Consensus 10 ~L~alq~~c-~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~~ 53 (88)
++..+..++ ...........-+++.++..++|+++.-..|....
T Consensus 37 awk~~k~~l~~~~g~~~~s~rd~~r~a~~~glI~~~~~~~w~~m~ 81 (119)
T 1wwp_A 37 FWKALQAYLREKEGLEGASPKGVIRLAREVGLLRDEEARLALGMV 81 (119)
T ss_dssp HHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 445555666 33222223566789999999999999766788653
No 23
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=34.54 E-value=41 Score=19.30 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhcCC-ChHHHHHHHHHHHhhh
Q psy8137 10 TATPPELFCHSLHF-PKGMLLRWFNNLYNLE 39 (88)
Q Consensus 10 ~L~alq~~c~~~~~-~~~~~~~il~~LYd~D 39 (88)
-|..++.+|..... ..++...|+..||..+
T Consensus 38 KLRdiE~l~q~~e~e~~~l~~~I~~ILYat~ 68 (75)
T 3mtu_A 38 KLRNIELICQENEGENDPVLQRIVDILYATD 68 (75)
T ss_dssp HHHHHHHHHHHTGGGTCHHHHHHHHHHHCBT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccC
Confidence 47778889988542 2467888999999763
No 24
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=31.74 E-value=1.1e+02 Score=19.88 Aligned_cols=10 Identities=10% Similarity=0.019 Sum_probs=4.1
Q ss_pred HHHHHHHHHh
Q psy8137 10 TATPPELFCH 19 (88)
Q Consensus 10 ~L~alq~~c~ 19 (88)
+|.+|+.+..
T Consensus 105 vL~si~~ll~ 114 (169)
T 1ayz_A 105 ILTSIQSLFN 114 (169)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 3444444433
No 25
>3brj_A Mannitol operon repressor; APC85967.1, MTLR, vibrio parahaem RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.75A {Vibrio parahaemolyticus rimd 2210633} SCOP: a.285.1.1
Probab=27.23 E-value=60 Score=21.91 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHH
Q psy8137 12 TPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAF 46 (88)
Q Consensus 12 ~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~i 46 (88)
+|++-...+.+ |-+.+..-++.+|-.++|+-+.+
T Consensus 55 yaVePLL~~~G-PL~dlsVRLKLlygLGvIs~~~Y 88 (175)
T 3brj_A 55 SVVGPLLQDSG-PLGDLSVRLKLLFGLGVLPDDIY 88 (175)
T ss_dssp HHHHHHHSTTS-TTCSHHHHHHHHHHHTCSCHHHH
T ss_pred HHHHHHhcCCC-CcchHHHHHHHHHHcCCCCHHHH
Confidence 45555555555 67788999999999999998764
No 26
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Probab=25.15 E-value=75 Score=24.85 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=24.1
Q ss_pred HHHHHHHHHhh-cCCChHHHHHHHHHHHhhhcc
Q psy8137 10 TATPPELFCHS-LHFPKGMLLRWFNNLYNLEII 41 (88)
Q Consensus 10 ~L~alq~~c~~-~~~~~~~~~~il~~LYd~Div 41 (88)
.+..||..|.. ..+.......|.+.||+.++|
T Consensus 285 ~ts~LQ~~As~~lg~sa~~tm~iAQ~LYE~glI 317 (592)
T 1mw9_X 285 ITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYI 317 (592)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTSB
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCee
Confidence 45778888876 455556778899999997655
No 27
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=23.44 E-value=1e+02 Score=22.09 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=27.5
Q ss_pred CCCC-----ChHHHHHHHHHHHhhcCCC------------hHHHHHHHHHHHhh
Q psy8137 2 DPGP-----NTPPTATPPELFCHSLHFP------------KGMLLRWFNNLYNL 38 (88)
Q Consensus 2 ~~~~-----~~~~~L~alq~~c~~~~~~------------~~~~~~il~~LYd~ 38 (88)
||.| -|-.|+..|-.|...+.++ .+.|..|++.||..
T Consensus 4 DpRpl~Dk~~q~~~~~~i~~fL~~~~~~~~is~k~L~~Pt~KdF~~if~fL~~~ 57 (315)
T 2ve7_A 4 DPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGF 57 (315)
T ss_dssp CCSCTTCHHHHHHHHHHHHHHHHHTTCSSCCCTGGGSSCCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCcccCCCCCHHHHHHHHHHHHHh
Confidence 5665 5888999999998875432 24788899988864
No 28
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=22.75 E-value=93 Score=19.69 Aligned_cols=42 Identities=10% Similarity=0.011 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhcCCC-----hHHHHHHHHHHHhhhccChhHHHHHHhcc
Q psy8137 10 TATPPELFCHSLHFP-----KGMLLRWFNNLYNLEIIEEEAFSKWRENI 53 (88)
Q Consensus 10 ~L~alq~~c~~~~~~-----~~~~~~il~~LYd~DiveEe~il~W~~~~ 53 (88)
|+..+..++...... .....-+++.++..++|+++ -.|..-.
T Consensus 57 awk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~--~~w~~m~ 103 (146)
T 1jog_A 57 SLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM--SKWVAYR 103 (146)
T ss_dssp HHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH--HHHHHHH
T ss_pred HHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH--HHHHHHH
Confidence 344445555443221 23567799999999999888 5787643
No 29
>2hkt_A Putative transcriptional regulator; structural genomics, APC27974, YGGD, mannitol operon repressor, MTLR, shigella flexneri 2A 2457T, PSI-2; 2.50A {Shigella flexneri} PDB: 3c8g_D* 3c8g_A* 3c8g_B*
Probab=21.09 E-value=57 Score=21.94 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHH
Q psy8137 12 TPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAF 46 (88)
Q Consensus 12 ~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~i 46 (88)
+|++-...+.+ |-+.+..-++.+|-.++|+.+.+
T Consensus 55 yAV~pLL~~sG-PLg~lsVRlKLlygLGvIs~~~y 88 (172)
T 2hkt_A 55 YAVKPLLAQSG-PLDDIDVALRLIYALGKMDKWLY 88 (172)
T ss_dssp HTHHHHSSTTS-TTCSHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHhcCCC-CchhHHHHHHHHHHcCCCCHHHH
Confidence 44454444444 67788999999999999998753
No 30
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=20.89 E-value=62 Score=18.74 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcCC----Ch-----HHHHHHHHHHHhhhccChhHHH
Q psy8137 11 ATPPELFCHSLHF----PK-----GMLLRWFNNLYNLEIIEEEAFS 47 (88)
Q Consensus 11 L~alq~~c~~~~~----~~-----~~~~~il~~LYd~DiveEe~il 47 (88)
++-+|.+...-+. .. .++..=++.||+.++|+-+.++
T Consensus 5 lYDVqQLLK~fG~~IY~GdR~~DielM~~El~~Ly~~~lId~~~y~ 50 (72)
T 2nn4_A 5 FYDVQQLLKTFGHIVYFGDRELEIEFMLDELKELYMNHMIEKEQWA 50 (72)
T ss_dssp HHHHHHHHHTTTCCCCCSCHHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHCCEEEEeCChHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 5666766665321 12 1445567899999999988876
No 31
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=20.47 E-value=1.2e+02 Score=24.63 Aligned_cols=44 Identities=9% Similarity=0.082 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhccChhHHHHHHhc
Q psy8137 6 NTPPTATPPELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWREN 52 (88)
Q Consensus 6 ~~~~~L~alq~~c~~~~~~~~~~~~il~~LYd~DiveEe~il~W~~~ 52 (88)
.|..+|.++-.|=.++. .+...++..|-..+||+-.+|..|-=.
T Consensus 563 ~q~~il~~v~~~W~~~~---q~~~ividkll~~~iv~p~~Vv~w~f~ 606 (771)
T 1h2v_C 563 GKLHVLRVMFEVWRNHP---QMIAVLVDKMIRTQIVDCAAVANWIFS 606 (771)
T ss_dssp HHHHHHHHHHHHHTTCH---HHHHHHHHHHHHTTSSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcCC---ceEehHHHHHHhcCCCCHHHHHHHHcC
Confidence 47778888877776633 367788889999999999999999944
No 32
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=20.01 E-value=1e+02 Score=24.56 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhh-cCCChHHHHHHHHHHHh-hhcc
Q psy8137 9 PTATPPELFCHS-LHFPKGMLLRWFNNLYN-LEII 41 (88)
Q Consensus 9 ~~L~alq~~c~~-~~~~~~~~~~il~~LYd-~Div 41 (88)
=-|..||..|.. ..+.......|.+.||+ ..+|
T Consensus 292 f~ts~LQ~~As~~lg~sa~~Tm~iAQ~LYE~~glI 326 (659)
T 1i7d_A 292 FSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLI 326 (659)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCCB
T ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCeE
Confidence 346788999977 45555678899999999 5655
Done!