RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8137
(88 letters)
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat
domain, structural genomics, PSI, protein structure
initiative; 1.90A {Homo sapiens}
Length = 168
Score = 78.6 bits (193), Expect = 2e-20
Identities = 37/63 (58%), Positives = 51/63 (80%)
Query: 15 ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
++ C++ +FPKGMLLR+F + Y++EIIEEEAF W+E+I+ +PGKG+ALFQVN WL WL
Sbjct: 106 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 165
Query: 75 AEA 77
A
Sbjct: 166 ETA 168
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal
region, MA2 domain, W2 domain, EIF4G2, EIF family
translation; HET: MES PG4; 2.00A {Homo sapiens}
Length = 364
Score = 81.9 bits (201), Expect = 3e-20
Identities = 37/63 (58%), Positives = 51/63 (80%)
Query: 15 ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWL 74
++ C++ +FPKGMLLR+F + Y++EIIEEEAF W+E+I+ +PGKG+ALFQVN WL WL
Sbjct: 302 QVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 361
Query: 75 AEA 77
A
Sbjct: 362 ETA 364
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat,
guanine nucleotide exchange factor, disease mutation,
leukodystrophy; 2.00A {Homo sapiens}
Length = 182
Score = 64.7 bits (157), Expect = 8e-15
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 15 ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISD-AYPGKGEALFQVNAWLNW 73
E F + + Y LEI+ E W + Q+ ++ W
Sbjct: 111 EDFFLEHEALGISMAKVLMAFYQLEILAGETILSWFSQRDTTDKGQQLRKNQQLQRFIQW 170
Query: 74 LAEAESEEEEEE 85
L EAE E E++
Sbjct: 171 LKEAEEESSEDD 182
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat,
AA motif; 2.30A {Saccharomyces cerevisiae} SCOP:
a.118.1.14
Length = 189
Score = 64.6 bits (157), Expect = 1e-14
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 15 ELFCHSLHFPKGM--LLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLN 72
F K L +LY+ +IIEE+ KW +N+S P E W+
Sbjct: 117 MEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTD-PRYDEVKKLTVKWVE 175
Query: 73 WLAEAESEEEEEEE 86
WL A+ E EEE
Sbjct: 176 WLQNADEESSSEEE 189
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding,
phosphorylation, protein biosynthesis, translation
inititation; 1.8A {Homo sapiens}
Length = 208
Score = 54.3 bits (130), Expect = 9e-11
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 15 ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKG---EALFQVNAWL 71
+ + +Y+ +++EEE W E S Y K E + ++
Sbjct: 89 CVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFI 148
Query: 72 NWLAEAESEEEEEEEEN 88
WL EAE E EEE+
Sbjct: 149 KWLKEAEEESSGGEEED 165
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat
motif; 1.50A {Saccharomyces cerevisiae}
Length = 177
Score = 53.6 bits (128), Expect = 1e-10
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 15 ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEA---LFQVNAWL 71
+L + LYN +II EE ++ S + K + ++
Sbjct: 95 RFLGLEHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFI 154
Query: 72 NWLAEAESEEEEEEEEN 88
WL AES+++EE++E
Sbjct: 155 TWLETAESDDDEEDDEL 171
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat
repeat, translation; 2.24A {Homo sapiens} SCOP:
a.118.1.14 a.118.1.14
Length = 339
Score = 54.1 bits (129), Expect = 2e-10
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 17 FCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDA 56
+L P +L +F+ LY+ ++++E+AF W + A
Sbjct: 299 LVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSWESSKDPA 338
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 0.92
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 17/46 (36%)
Query: 42 EEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAESEEEEEEEE 87
E E+ KWRE L E ++ + E+E
Sbjct: 83 EPESIRKWREEQRKR-----------------LQELDAASKVMEQE 111
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 26.0 bits (57), Expect = 1.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 40 IIEEEAFSKWRENISDAYPGKGEALFQVN 68
+ E+A +++I AY KGE + ++N
Sbjct: 573 LPFEKAVDLLKKSIHKAYGKKGEKIVKMN 601
>3ddd_A Putative acetyltransferase; NP_142035.1, structural genomi center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: COA; 2.25A {Pyrococcus horikoshii}
Length = 288
Score = 24.6 bits (53), Expect = 6.1
Identities = 6/43 (13%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 38 LEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAESE 80
+ I + ++ E +V LA + E
Sbjct: 34 VSIFIDAY---NFPGPRESVKSSFEISLEVQPDGCLLAFLKDE 73
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Length = 197
Score = 23.9 bits (51), Expect = 9.1
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 42 EEEAFSKWREN--ISDAYPGKGEALFQVNAWLNWLAEAESEEEEEEEE 87
+ E + A PG+ EA E +E +EE
Sbjct: 151 DSEKHIDFAPTSPFGGARPGRVA-RRNAARKAEASGEAADEADEADEE 197
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 23.7 bits (52), Expect = 9.9
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 20 SLHFPKGMLLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAES 79
SL F G L N L N++I + E + + + AL ++ L + + E
Sbjct: 103 SLEFLMGRALD--NALINMKIEDPEDPAASKGKPREMI---KGALDELGFKLEDVLDQEP 157
Query: 80 E 80
+
Sbjct: 158 D 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.132 0.424
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,535,707
Number of extensions: 77808
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 27
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.4 bits)