RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8137
         (88 letters)



>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b
           epsilon {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 161

 Score = 65.7 bits (160), Expect = 8e-16
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 15  ELFCHSLHFPKGM--LLRWFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLN 72
                   F K    L     +LY+ +IIEE+   KW +N+S   P   E       W+ 
Sbjct: 97  MEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTD-PRYDEVKKLTVKWVE 155

Query: 73  WLAEAE 78
           WL  A+
Sbjct: 156 WLQNAD 161


>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 52.6 bits (126), Expect = 5e-11
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 15  ELFCHSLHFPKGMLLRWFNNLYNLEIIEEEAFSKW 49
           +    +L  P  +L  +F+ LY+ ++++E+AF  W
Sbjct: 93  QALVVTLEQPPNLLRMFFDALYDEDVVKEDAFYSW 127


>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 195

 Score = 23.0 bits (49), Expect = 5.8
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 9/47 (19%)

Query: 14  PELFCHSLH-----FPKGMLLRWFNNLYNLEIIEEEAFSKWRENISD 55
            E +    H     + K   + W+      E +EE  FS+ RE+++ 
Sbjct: 140 AEAWARLDHKFDLMYAKRAFVHWYVG----EGMEEGEFSEAREDMAA 182


>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 150

 Score = 22.6 bits (48), Expect = 8.3
 Identities = 10/56 (17%), Positives = 21/56 (37%)

Query: 31  WFNNLYNLEIIEEEAFSKWRENISDAYPGKGEALFQVNAWLNWLAEAESEEEEEEE 86
                  L +++         N +D+ PG     F +    N +  ++S +  E+E
Sbjct: 73  VAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKE 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.132    0.424 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 391,151
Number of extensions: 16711
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 9
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.2 bits)