BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8139
(1101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 127/335 (37%), Gaps = 53/335 (15%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD--NDI 507
A AP F L + +V G P P V WY+ G EI + + + +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYED-GLLFEM-GEI 565
LII D + ATN+ G A L +E P I LPK E G + + GE+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA-RRADRGEYQAHGV 624
+ +K+ +G P P W + + + G Y++ T + +L + R D G Y
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 625 NSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRXX 684
N G D + + V D P PP KV SV L+W+EP DGG KI NYIVE
Sbjct: 182 NRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKC--- 238
Query: 685 XXXXXXXXXXDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVED 744
T + W+R +
Sbjct: 239 -------------------------------------------ATTAERWLRVG--QARE 253
Query: 745 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP 779
T V L YQFR+ AEN G S+P SEP
Sbjct: 254 TRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEP 288
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 354 LPDSP------SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTE 407
+PD P + RD + W P DGGS + Y+VE T + W+R +T
Sbjct: 198 VPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVG--QARETR 255
Query: 408 LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP 440
V L YQFR+ AEN G S+P SEP
Sbjct: 256 YTVINLFGKTSYQFRVIAENKFGLSKPSEPSEP 288
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 1/191 (0%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
AP + + D T E + + Q+ G P P + WY+ G E+ SR+ ++ +D TL
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
+ DEG C ATN G T ++L L+A P ++ +G ++L V
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA-RRADRGEYQAHGVNSLGED 630
G P P W H + L + I +T+ Y +L + + R+ G+Y+ N G
Sbjct: 127 YIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Query: 631 VASFLVTVTDR 641
A V + D+
Sbjct: 187 DAILDVEIQDK 197
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 107/243 (44%), Gaps = 14/243 (5%)
Query: 402 MVEDTE-LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 460
+VE+T L V + G Q+ A NV G + + Q P FI+ L
Sbjct: 248 LVENTATLTVLKVTKGDAGQYTCYASNVAGKD---------SCSAQLGVQEPPRFIKKLE 298
Query: 461 DTTAL-EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
+ + +DE + ++ G P KV WYKD EI S + R+ ++ L ++ ++ D
Sbjct: 299 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 358
Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT 579
G+ C A N AG + + L+++ PP R + L G + L+ + G PP
Sbjct: 359 SGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQ 415
Query: 580 ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
W + L SG +Y+I + ++ I + AD GEYQ N +G D +T+
Sbjct: 416 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Query: 640 DRP 642
P
Sbjct: 476 APP 478
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 88/177 (49%), Gaps = 4/177 (2%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
P F + H L+ V +++G P +VSW+KD E+ S ++ +I+++N ++++ I
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 444
Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSM 572
D GE +C A+N G + L+APP R K+ D + +GE ++L+ ++
Sbjct: 445 LNVDSADIGEYQCKASNDVGSDTCVGSITLKAPP--RFVKKLSD-ISTVVGEEVQLQATI 501
Query: 573 AGMPPPTARWLHN-GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
G P + W + GE + I++++ L+ S A A+ G+Y N G
Sbjct: 502 EGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAG 558
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 12/216 (5%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
P FI L A E + +V+G P +++WYK+ ++ S+ ++ N++++L+I
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRL---EAPPTI-RLPKQYEDGLLFEMGEIIKL 568
++ D GE C A N G + A L + + PP+ R K + L F +
Sbjct: 66 NKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFP----VAF 121
Query: 569 KVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
+ + G P W +GE L + + L+I ++ G+Y N LG
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181
Query: 629 EDVASFLVTVTDRPLPP----GKAKVVMTLGKSVTL 660
+S +T+++ +PP V + LG+S T
Sbjct: 182 TASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTF 217
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 10/236 (4%)
Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF-IRALHDTTALEDEKVEFTVQVEG 478
Q+ +A N +G + S LT++ P P F ++ + AL E F V G
Sbjct: 171 QYNCSASNPLGTASS---SAKLTLSEHEVP---PFFDLKPVSVDLAL-GESGTFKCHVTG 223
Query: 479 IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
K++W KD EI ++ + +TL + + D G+ C A+N AG A
Sbjct: 224 TAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSA 283
Query: 539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
+L ++ PP R K+ E + + E + + + G P W + + ++ ++
Sbjct: 284 QLGVQEPP--RFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS 341
Query: 599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTL 654
+ L + + D G+Y N+ G +S + V + P+ K V TL
Sbjct: 342 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL 397
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRIVTDNDIST 509
A P F++ L D + + E+V+ +EG V+W+KD EI S I +I+T
Sbjct: 476 APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIAT 535
Query: 510 LIIHQAALMDEGEIKCTATNRAG 532
L +A + G+ C N AG
Sbjct: 536 LQFSRAEPANAGKYTCQIKNEAG 558
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 14/229 (6%)
Query: 402 MVEDTE-LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 460
+VE+T L V + G Q+ A NV G + + Q A P FI+ L
Sbjct: 56 LVENTATLTVLKVTKGDAGQYTCYASNVAGKD---------SCSAQLGVQAPPRFIKKLE 106
Query: 461 DTTAL-EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
+ + +DE + ++ G P KV WYKD EI S + R+ ++ L ++ ++ D
Sbjct: 107 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166
Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT 579
G+ C A N AG + + L+++ PP R + L G + L+ + G PP
Sbjct: 167 SGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQ 223
Query: 580 ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
W + L SG +Y+I + ++ I + AD GEYQ N +G
Sbjct: 224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 5/207 (2%)
Query: 450 AAAPSF--IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
A AP F ++ + AL E F V G K++W KD EI ++ +
Sbjct: 2 AMAPPFFDLKPVSVDLAL-GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
+TL + + D G+ C A+N AG A+L ++APP R K+ E + + E +
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPP--RFIKKLEPSRIVKQDEHTR 118
Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
+ + G P W + + ++ ++ + L + + D G+Y N+
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 628 GEDVASFLVTVTDRPLPPGKAKVVMTL 654
G +S + V + P+ K V TL
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETL 205
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
P F + H L+ V +++G P +VSW+KD E+ S ++ +I+++N ++++ I
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 252
Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
D GE +C A+N G + L+A
Sbjct: 253 LNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 14/229 (6%)
Query: 402 MVEDTE-LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 460
+VE+T L V + G Q+ A NV G + + Q P FI+ L
Sbjct: 56 LVENTATLTVLKVTKGDAGQYTCYASNVAGKD---------SCSAQLGVQEPPRFIKKLE 106
Query: 461 DTTAL-EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
+ + +DE + ++ G P KV WYKD EI S + R+ ++ L ++ ++ D
Sbjct: 107 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVED 166
Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT 579
G+ C A N AG + + L+++ PP R + L G + L+ + G PP
Sbjct: 167 SGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL---KGADVHLECELQGTPPFQ 223
Query: 580 ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
W + L SG +Y+I + ++ I + AD GEYQ N +G
Sbjct: 224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 5/207 (2%)
Query: 450 AAAPSF--IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
A AP F ++ + AL E F V G K++W KD EI ++ +
Sbjct: 2 AMAPPFFDLKPVSVDLAL-GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
+TL + + D G+ C A+N AG A+L ++ PP R K+ E + + E +
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP--RFIKKLEPSRIVKQDEHTR 118
Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
+ + G P W + + ++ ++ + L + + D G+Y N+
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 628 GEDVASFLVTVTDRPLPPGKAKVVMTL 654
G +S + V + P+ K V TL
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETL 205
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
P F + H L+ V +++G P +VSW+KD E+ S ++ +I+++N ++++ I
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 252
Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
D GE +C A+N G + L+A
Sbjct: 253 LNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 8/182 (4%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR--RQRIVTDNDIST 509
AP+F + L LE F + G P P+VSW++DG I +S +I + +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLE---APPTIRLPKQYEDGLLFEMGEII 566
L I + G ATN +G + + A L ++ APP Q + G +
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF---VQRLQSMTVRQGSQV 121
Query: 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
+L+V + G+P P ++ +G + S ++I+ +L I++A D G Y + NS
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 627 LG 628
+G
Sbjct: 182 VG 183
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%)
Query: 447 RSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND 506
++ A P+F++ L T + +V V+V GIPTP V +Y+DG EI SS +I + D
Sbjct: 98 KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD 157
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
+ +L+I +A D G ATN G + + A L ++
Sbjct: 158 LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQG 195
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 546 PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG--RYEITHTDRY 603
PT P Q ++ G + ++G P P W +G+ +++ +I+ +D
Sbjct: 6 PTFTQPLQ---SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
L I +A+ G Y N G+ ++ + V PP
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP 104
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 77.4 bits (189), Expect = 4e-14, Method: Composition-based stats.
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 8/187 (4%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ--RIVTDNDIST 509
AP+F + L LE F + G P P+VSW++DG I +S +I + +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLE---APPTIRLPKQYEDGLLFEMGEII 566
L I + G ATN +G + + A L ++ APP Q + G +
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNF---VQRLQSMTVRQGSQV 121
Query: 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
+L+V + G+P P ++ +G + S ++I+ +L I++A D G Y + NS
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 627 LGEDVAS 633
+G ++
Sbjct: 182 VGRATST 188
Score = 64.3 bits (155), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 447 RSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND 506
++ A P+F++ L T + +V V+V GIPTP V +Y+DG EI SS +I + D
Sbjct: 98 KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD 157
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
+ +L+I +A D G ATN G + + A L ++
Sbjct: 158 LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 33.5 bits (75), Expect = 0.76, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 546 PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR--YEITHTDRY 603
PT P Q ++ G + ++G P P W +G+ +++ +I+ +D
Sbjct: 6 PTFTQPLQ---SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
L I +A+ G Y N G+ ++ + V PP
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPP 104
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 80/196 (40%), Gaps = 5/196 (2%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD--NDI 507
A AP F L + +V G P P V WY+ G EI + + + +
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYED-GLLFEM-GEI 565
LII D + ATN+ G A L +E P I LPK E G + + GE+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA-RRADRGEYQAHGV 624
+ +K+ +G P P W + + + G Y++ T + +L + R D G Y
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 625 NSLGEDVASFLVTVTD 640
N G D + + V D
Sbjct: 182 NRFGIDQKTVELDVAD 197
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
P F++ D T L F Q G P P+++W K G ++ S R + I D+ +++
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 67
Query: 513 HQAALM--DEGEIKCTATNRAGHSITKARLRL-------EAPPTIRLPKQYEDGLLFEMG 563
Q + DE +CTATN G T A+L + PTI + Q + + E G
Sbjct: 68 IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLK---VVEKG 124
Query: 564 EIIKLKVSMAGMPPPTARWLHN---GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
+ + G P P W + +P S GR + R L+I + +D+G+Y+
Sbjct: 125 RTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQL---RSGALQIESSEESDQGKYE 181
Query: 621 AHGVNSLG 628
NS G
Sbjct: 182 CVATNSAG 189
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 452 APSF-IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDIST 509
APS R +T AL ++V G P P++ W K DG S Q + T
Sbjct: 205 APSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKVDG----SLSPQWTTAE---PT 257
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT-IRLPKQYEDGLLFEMGEIIKL 568
L I + DEG +C A N G + R+ ++A P +++ E ++G ++
Sbjct: 258 LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEA----DIGSNLRW 313
Query: 569 KVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
+ AG P PT RWL NGEPL S R E+ D LR S D G YQ N G
Sbjct: 314 GCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGD----LRFSKLSLEDSGMYQCVAENKHG 369
Query: 629 EDVASFLVTV 638
AS + V
Sbjct: 370 TIYASAELAV 379
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
A P +++ + DT A + + G P P V W ++G + S R ++ + L
Sbjct: 292 AQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGD----L 347
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
+ +L D G +C A N+ G A L ++A
Sbjct: 348 RFSKLSLEDSGMYQCVAENKHGTIYASAELAVQA 381
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 5/194 (2%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD--NDIST 509
AP F L + +V G P P V WY+ G EI + + + +
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYED-GLLFEM-GEIIK 567
LII D + ATN+ G A L +E P I LPK E G + + GE++
Sbjct: 62 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 121
Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA-RRADRGEYQAHGVNS 626
+K+ +G P P W + + + G Y++ T + +L + R D G Y N
Sbjct: 122 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 181
Query: 627 LGEDVASFLVTVTD 640
G D + + V D
Sbjct: 182 FGIDQKTVELDVAD 195
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 360 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY 419
+ R+ ++ WE PE+DGGS +LGY+VE + GS W A+ V+ TE ++GL G Y
Sbjct: 114 VTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKW--ATCATVKVTEATITGLIQGEEY 171
Query: 420 QFRITAENVVGFSEPGPLSEPL 441
FR++A+N G S+P LS P+
Sbjct: 172 SFRVSAQNEKGISDPRQLSVPV 193
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY 758
+ R+ ++ WE PE+DGGS +LGY+VE + GS W A+ V+ TE ++GL G Y
Sbjct: 114 VTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKW--ATCATVKVTEATITGLIQGEEY 171
Query: 759 QFRITAENVVGFSEPGPLSEPL 780
FR++A+N G S+P LS P+
Sbjct: 172 SFRVSAQNEKGISDPRQLSVPV 193
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
T+ W+PP DGGS + Y+VE R + + + + T V L+ G Y FR+
Sbjct: 22 VTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATN-CHKTSWKVDQLQEGCSYYFRVL 80
Query: 764 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKPRN 811
AEN G P +E + + + P + + ++ +L EKP +
Sbjct: 81 AENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEH 128
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
T+ W+PP DGGS + Y+VE R + + + + T V L+ G Y FR+
Sbjct: 22 VTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATN-CHKTSWKVDQLQEGCSYYFRVL 80
Query: 425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVE 471
AEN G P +E + + + P + + ++ +L EK E
Sbjct: 81 AENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPE 127
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 23/40 (57%)
Query: 640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE 679
D P PP KV SVTL+W P DGG KI NYIVE
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVE 43
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 18/188 (9%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
P FI+ D T L F Q G P P+++W K G ++ S R + I D+ +++
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLR 66
Query: 513 HQAALM--DEGEIKCTATNRAGHSITKARLRL----EAP---PTIRLPKQYEDGLLFEMG 563
Q + DE +CTATN G T A+L + + P P+I + Q + + E
Sbjct: 67 IQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLK---VVEKA 123
Query: 564 EIIKLKVSMAGMPPPTARWLHN---GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
+ + G P P W + +P TS GR + R L+I + +D+G+Y+
Sbjct: 124 RTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQL---RSGALQIESSEESDQGKYE 180
Query: 621 AHGVNSLG 628
NS G
Sbjct: 181 CVATNSAG 188
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 15/169 (8%)
Query: 476 VEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI 535
G+PTP ++WYK G ++ S + + +N L I + D GE C A+N+ G
Sbjct: 246 ASGVPTPDIAWYKKGGDLPSDKAK---FENFNKALRITNVSEEDSGEYFCLASNKMGSIR 302
Query: 536 TKARLRLEAPPT-IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR 594
+R++A P + PK L+ GE +L G P PT +W+ NGEPL S
Sbjct: 303 HTISVRVKAAPYWLDEPKN----LILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAP- 357
Query: 595 YEITHTDRYL---NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
+ +R + + D + + R YQ + N G +A+ V+V D
Sbjct: 358 ---PNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 68/190 (35%), Gaps = 21/190 (11%)
Query: 468 EKVEFTVQVE---GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD-EGEI 523
E T+Q G+P+P + W E + ++ V+ L L D + +
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKR--VSQGHNGDLYFSNVMLQDMQTDY 187
Query: 524 KCTATNRAGHSITK----------ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA 573
C A H+I + R E P+ P+ + G + L+ +
Sbjct: 188 SCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS 247
Query: 574 GMPPPTARWLHNGEPLTSG-GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA 632
G+P P W G L S ++E + LRI++ D GEY N +G
Sbjct: 248 GVPTPDIAWYKKGGDLPSDKAKFENFNKA----LRITNVSEEDSGEYFCLASNKMGSIRH 303
Query: 633 SFLVTVTDRP 642
+ V V P
Sbjct: 304 TISVRVKAAP 313
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 16/235 (6%)
Query: 456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK--DGFEIFSS-----RRQRIVTDNDIS 508
I L + T E+ +V EG P P+++W + DGF R + + S
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM--GEII 566
+L I L D G C A +R G L +E PK + ++ G I
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-----YAPKFISNQTIYYSWEGNPI 118
Query: 567 KLKVSMAGMPPPTARWLHNGE--PLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624
+ + PP + W + P + + T R + L I+ D G Y
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 625 NSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE 679
N +G +++ + D P P K++ + +S+++P+ GG I +Y V+
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD 233
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 375 DGGSPVLGYLVEHR-RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE 433
DGG+P+L Y+V++R + W+ +D +++ L+ Y+ +ITA N +G+SE
Sbjct: 318 DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD-HIILEHLQWTMGYEVQITAANRLGYSE 376
Query: 434 P 434
P
Sbjct: 377 P 377
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 714 DGGSPVLGYLVEHR-RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE 772
DGG+P+L Y+V++R + W+ +D +++ L+ Y+ +ITA N +G+SE
Sbjct: 318 DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD-HIILEHLQWTMGYEVQITAANRLGYSE 376
Query: 773 P 773
P
Sbjct: 377 P 377
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 92/235 (39%), Gaps = 16/235 (6%)
Query: 456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK--DGFEIFSS-----RRQRIVTDNDIS 508
I L + T E+ +V EG P P+++W + DGF R + + S
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM--GEII 566
+L I L D G C A +R G L +E PK + ++ G I
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE-----YAPKFISNQTIYYSWEGNPI 118
Query: 567 KLKVSMAGMPPPTARWLHNGE--PLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624
+ + PP + W + P + + T R + L I+ D G Y
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 625 NSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE 679
N +G +++ + D P P K++ + +S+++P+ GG I +Y V+
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD 233
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
DT AL + V G P P++ W K DG S+ + ++ + L I D
Sbjct: 216 DTYALTGQMVTLECFAFGNPVPQIKWRKLDG-----SQTSKWLSSEPL--LHIQNVDFED 268
Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPT-IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP 578
EG +C A N G + R+ + A P + + E ++G ++ +G P P
Sbjct: 269 EGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEA----DIGSDLRWSCVASGKPRP 324
Query: 579 TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
RWL +G+PL S R E++ + LR S D G YQ N G AS +TV
Sbjct: 325 AVRWLRDGQPLASQNRIEVSGGE----LRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
A P ++ + DT A + ++ G P P V W +DG + S R + L
Sbjct: 293 AQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE----L 348
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
+ L D G +C A N+ G A L ++A
Sbjct: 349 RFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 29/175 (16%)
Query: 467 DEKVEFTVQVEGIPTPKVSWYKDGFEI--FSSRRQRIVTDNDISTLIIHQAALMDEGEIK 524
+EKV T + P W +G E+ R R+V + +I + D G +
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD---LVISNPVKAKDAGSYQ 78
Query: 525 CTATNRAGHSITK-ARLRL----EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP- 578
C ATN G +++ A LR E R P + +G V PPP
Sbjct: 79 CVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEG----------WGVMFTCSPPPH 128
Query: 579 ----TARWLHNGEP--LTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
+ RWL N P + + GR ++ T NL I+ +D G Y + +
Sbjct: 129 YPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHI 181
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 559 LFEMG---EIIKLKVSMAGMPPPTARWLHNGEPLTSG--GRYEITHTDRYLNLRISDARR 613
LF G E + L PP T RW NG L G RY + D L IS+ +
Sbjct: 15 LFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD----LVISNPVK 70
Query: 614 A-DRGEYQAHGVNSLGEDVA 632
A D G YQ N+ G V+
Sbjct: 71 AKDAGSYQCVATNARGTVVS 90
>pdb|1X5Y|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Mouse Myosin-Binding Protein C, Fast-Type Homolog
Length = 111
Score = 60.1 bits (144), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE 426
++W PP+ G + GYLVE+ GS WV A+ VE V L G R FR+
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 427 NVVGFSEPGPLSEPLTV 443
N+ G SEP L +P+T+
Sbjct: 87 NIAGRSEPATLLQPVTI 103
Score = 60.1 bits (144), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 706 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE 765
++W PP+ G + GYLVE+ GS WV A+ VE V L G R FR+
Sbjct: 27 LKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV 86
Query: 766 NVVGFSEPGPLSEPLTV 782
N+ G SEP L +P+T+
Sbjct: 87 NIAGRSEPATLLQPVTI 103
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 33/193 (17%)
Query: 437 LSEPLTVTYQRSPAAA--PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF 494
++EP++ + R+PA P + H + L +G P P WYK F
Sbjct: 203 ITEPISSSAPRTPALVQKPLELMVAHTISLL--------CPAQGFPAPSFRWYK--FIEG 252
Query: 495 SSRRQRIVTDNDI----STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRL 550
++R+Q +V ++ + TLII A + D G+ C N G + L + AP + ++
Sbjct: 253 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI 312
Query: 551 --PKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRI 608
P Q D G G P T W+ +G+ I H++ LRI
Sbjct: 313 DPPTQTVD-----FGRPAVFTCQYTGNPIKTVSWMKDGK--------AIGHSESV--LRI 357
Query: 609 SDARRADRGEYQA 621
++ D+G YQ
Sbjct: 358 ESVKKEDKGMYQC 370
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 534 SITKARLRLEAPPTI---RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
S TK RL + P + R P + L + I L G P P+ RW E T
Sbjct: 195 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTT 254
Query: 591 SGGRYEITHTDRYL----NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
+ + DR L I DA D G+Y NS+G + ++TVT
Sbjct: 255 R--KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 305
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 33/193 (17%)
Query: 437 LSEPLTVTYQRSPAAA--PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF 494
++EP++ + R+PA P + H + L +G P P WYK F
Sbjct: 209 ITEPISSSAPRTPALVQKPLELMVAHTISLL--------CPAQGFPAPSFRWYK--FIEG 258
Query: 495 SSRRQRIVTDNDI----STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRL 550
++R+Q +V ++ + TLII A + D G+ C N G + L + AP + ++
Sbjct: 259 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI 318
Query: 551 --PKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRI 608
P Q D G G P T W+ +G+ I H++ LRI
Sbjct: 319 DPPTQTVD-----FGRPAVFTCQYTGNPIKTVSWMKDGK--------AIGHSESV--LRI 363
Query: 609 SDARRADRGEYQA 621
++ D+G YQ
Sbjct: 364 ESVKKEDKGMYQC 376
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 534 SITKARLRLEAPPTI---RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
S TK RL + P + R P + L + I L G P P+ RW E T
Sbjct: 201 SATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTT 260
Query: 591 SGGRYEITHTDRYL----NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
+ + DR L I DA D G+Y NS+G + ++TVT
Sbjct: 261 R--KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 311
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Query: 485 SWYKDGFEIFSSRRQRIVTDNDIST--LIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542
+++K+G ++ + RI N S L+ DEG C N G K L+L
Sbjct: 245 NYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP-QKHSLKL 303
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
+ ++ E ++ + G+ + + + G+P P W HN +PL SGGR +T +
Sbjct: 304 TVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVTDS-- 360
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
L I + D+G Y N G+ LV V
Sbjct: 361 --GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKC 525
+ + V +V G+P P V W + + R VTD S L+I D+G C
Sbjct: 323 QGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR--ATVTD---SGLVIKGVKNGDKGYYGC 377
Query: 526 TATNRAG 532
ATN G
Sbjct: 378 RATNEHG 384
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
P F R D T + F Q G P PK+ W K G ++ S++R ++ +D S ++
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGSVL 65
Query: 513 HQAAL---MDEGEIKCTATNRAGHSITKARLRL----EAP---PTIRLPKQYEDGLLFEM 562
L DE +C A+N G RL + + P PTI + Q + + E
Sbjct: 66 RIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLK---VVER 122
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPL---TSGGRYEITHTDRYLNLRISDARRADRGEY 619
+ + +G P P W + P+ + GR + ++ L+I + +D+G+Y
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKY 182
Query: 620 QAHGVNSLG 628
+ NS G
Sbjct: 183 ECVATNSAG 191
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 13/175 (7%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
+ TA E++ F+ + G P P +SW+++G I ++ + + L + D
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLI--EENEKYILKGSNTELTVRNIINSDG 70
Query: 521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA 580
G C ATN+AG +A L++ P I Q ++ +E G++ L G P P
Sbjct: 71 GPYVCRATNKAGEDEKQAFLQVFVQPHI---IQLKNETTYENGQVT-LVCDAEGEPIPEI 126
Query: 581 RWLH--NGEPLTSG-----GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
W +G T G GR E+ +L I D + +D G Y + +G
Sbjct: 127 TWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 546 PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN 605
P I +P++ + E GE + +G P P W NG+ + +Y + ++ L
Sbjct: 3 PAISMPQKSFNATA-ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 606 LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
+R + +D G Y N GED + V +P
Sbjct: 62 VR--NIINSDGGPYVCRATNKAGEDEKQAFLQVFVQP 96
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK--DGFEIFSS-----RRQRIVTDNDIS 508
I L + T E+ +V EG P P+++W + DGF R + + S
Sbjct: 98 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 157
Query: 509 TLIIHQAALMDEGEIKCTATNRAG 532
+L I L D G C A +R G
Sbjct: 158 SLHIKDVKLSDSGRYDCEAASRIG 181
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 14/181 (7%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI-FSSRRQRIVTDNDISTL 510
AP L AL +E F VE P P++SW ++ I R I + + T+
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTI 66
Query: 511 IIHQAALMDEGEIKCTATNRAGHSI-TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK-- 567
+ + + D+G CTA N G ++ + L+++ P I P + ++ E +K
Sbjct: 67 LSVEDS--DDGIYCCTANNGVGGAVESCGALQVKMKPKITRPP-----INVKIIEGLKAV 119
Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
L + G P P+ W+ L R + + +LRI + ++ D G+Y+ NSL
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSL 176
Query: 628 G 628
G
Sbjct: 177 G 177
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
P R + +E K G P P VSW K + + R ++ + +L I
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL---ESGSLRI 157
Query: 513 HQAALMDEGEIKCTATNRAGHSITK-ARLRLE 543
H D G+ +C A N G + +K +L +E
Sbjct: 158 HNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 83/213 (38%), Gaps = 32/213 (15%)
Query: 440 PLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ 499
PL YQ +P I D ++E +VEG P P + W+KDG + ++ ++
Sbjct: 2 PLAGQYQ-----SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK 56
Query: 500 RIVTDNDISTLIIHQAAL----MDEGEIKCTATNRAGHSITK-ARLRLEA--------PP 546
L ++ D GE C A NR G ++++ A L++ P
Sbjct: 57 SHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK 116
Query: 547 TIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL-- 604
R+ K + L E G G+P PT W+ +G PL + R
Sbjct: 117 DTRVAKG--ETALLECG-------PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167
Query: 605 ---NLRISDARRADRGEYQAHGVNSLGEDVASF 634
NL IS+ D G Y+ N +G +S+
Sbjct: 168 DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSY 200
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 83/213 (38%), Gaps = 32/213 (15%)
Query: 440 PLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ 499
PL YQ +P I D ++E +VEG P P + W+KDG + ++ ++
Sbjct: 2 PLAGQYQ-----SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK 56
Query: 500 RIVTDNDISTLIIHQAAL----MDEGEIKCTATNRAGHSITK-ARLRLEA--------PP 546
L ++ D GE C A NR G ++++ A L++ P
Sbjct: 57 SHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK 116
Query: 547 TIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL-- 604
R+ K + L E G G+P PT W+ +G PL + R
Sbjct: 117 DTRVAKG--ETALLECG-------PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167
Query: 605 ---NLRISDARRADRGEYQAHGVNSLGEDVASF 634
NL IS+ D G Y+ N +G +S+
Sbjct: 168 DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSY 200
>pdb|2YUW|A Chain A, Solution Structure Of 2nd Fibronectin Domain Of Slow Type
Myosin-Binding Protein C
Length = 110
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 418
S+ T+RW PP++ G + + GY++E+ G+ W+ A+ +++ T+ ++GL +
Sbjct: 18 SVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAK 77
Query: 419 YQFRITAENVVGFSEPGPLSEPLTV 443
R+ A N G SEP S+P+ V
Sbjct: 78 IFVRVKAVNAAGASEPKYYSQPILV 102
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 757
S+ T+RW PP++ G + + GY++E+ G+ W+ A+ +++ T+ ++GL +
Sbjct: 18 SVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAK 77
Query: 758 YQFRITAENVVGFSEPGPLSEPLTV 782
R+ A N G SEP S+P+ V
Sbjct: 78 IFVRVKAVNAAGASEPKYYSQPILV 102
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 355 PDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLE 414
P ++ R T++W PEY GG + Y+VE R + W++A+ + + E VSGL
Sbjct: 17 PVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLT 76
Query: 415 PGWRYQFRITAENVVG-FSEPGPLSEPLT 442
Y+FR+ A+N G S P S+ +T
Sbjct: 77 EDAAYEFRVIAKNAAGAISPPSEPSDAIT 105
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 757
++ R T++W PEY GG + Y+VE R + W++A+ + + E VSGL
Sbjct: 21 NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAA 80
Query: 758 YQFRITAENVVG-FSEPGPLSEPLT 781
Y+FR+ A+N G S P S+ +T
Sbjct: 81 YEFRVIAKNAAGAISPPSEPSDAIT 105
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRIVTDNDISTLI 511
P F++A D T E + +V G+PTP +SW DG + S + +V +N + +LI
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 512 IHQAALMDEGEIKCTATNRAGHS 534
I D G C ATNRAG +
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQN 92
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 473 TVQVE----GIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTA 527
TV++E G P P + W + DG I +R+ R N I L I D G +C A
Sbjct: 221 TVKLECFALGNPVPTILWRRADGKPI--ARKARRHKSNGI--LEIPNFQQEDAGSYECVA 276
Query: 528 TNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE 587
N G ++ K +L A P Q + + M E + + G P PT RWL NG+
Sbjct: 277 ENSRGKNVAKGQLTFYAQPNW---VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 333
Query: 588 PLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
PL + R +I L I+ +D G YQ N G +S ++V
Sbjct: 334 PLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 380
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 20/189 (10%)
Query: 449 PAAAPSFIR-ALHDTTAL--EDEKVEFTVQVEGIPTPKVSWYKDG--FEIFSSRRQRIVT 503
P + P F++ H L E++KV+ + +V+G P P + W +G +I R +V
Sbjct: 1 PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV- 59
Query: 504 DNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEM 562
D S LI + D G +C ATN G +++ A+L+ + + +
Sbjct: 60 --DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQ 117
Query: 563 GEIIKLKVSMAGMPPPTAR----WLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGE 618
G ++ + G PP + W+ N P R ++ NL I+ ++D G
Sbjct: 118 GMVL-----LCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKSDVGN 170
Query: 619 YQAHGVNSL 627
Y N++
Sbjct: 171 YTCVVTNTV 179
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
A P++++ ++D +E V + + G P P W K+G + + R +I + TL
Sbjct: 293 AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTL 348
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
I L D G +C A N+ G + A L + A
Sbjct: 349 NITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA 382
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 25/163 (15%)
Query: 495 SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRL---- 550
S + R + L I + D G C TN T ++ PPT +
Sbjct: 143 SYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTN------TVTNHKVLGPPTPLILRND 196
Query: 551 -------PK---QYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLTSGGRYEITH 599
PK Q+ + + E G +KL+ G P PT W +G+P+ R H
Sbjct: 197 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR---RH 253
Query: 600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
+ L I + ++ D G Y+ NS G++VA +T +P
Sbjct: 254 KSNGI-LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP 295
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 18/188 (9%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
P FI+ D + F Q G P P+V+W K G ++ S R + I D ++
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 513 HQA--ALMDEGEIKCTATNRAGHSITKARLRL----EAP---PTIRLPKQYEDGLLFEMG 563
Q DE +C A N G A+L + + P P I + Q + + E
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 564 EIIKLKVSMAGMPPPTARWLHN---GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
+ + +G P P W + +P S GR + R L+I + D+G+Y+
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL---RSGALQIESSEETDQGKYE 180
Query: 621 AHGVNSLG 628
NS G
Sbjct: 181 CVATNSAG 188
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 18/188 (9%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
P FI+ D + F Q G P P+V+W K G ++ S R + I D ++
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 513 HQA--ALMDEGEIKCTATNRAGHSITKARLRL-------EAPPTIRLPKQYEDGLLFEMG 563
Q DE +C A N G A+L + P I + Q + + E
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 564 EIIKLKVSMAGMPPPTARWLHN---GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
+ + +G P P W + +P S GR + R L+I + D+G+Y+
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL---RSGALQIESSEETDQGKYE 180
Query: 621 AHGVNSLG 628
NS G
Sbjct: 181 CVATNSAG 188
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 23/148 (15%)
Query: 480 PTPKVSWYKDGFEIFSSRRQRIVTDNDI----STLIIHQAALMDEGEIKCTATNRAGHSI 535
PTP WYK F ++R+Q +V ++ + TLII A + D G+ C N G
Sbjct: 243 PTPSFRWYK--FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 300
Query: 536 TKARLRLEAPPTIRL--PKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG 593
+ L + AP + ++ P Q D G G P T W+ +G+
Sbjct: 301 VETVLTVTAPLSAKIDPPTQTVD-----FGRPAVFTCQYTGNPIKTVSWMKDGK------ 349
Query: 594 RYEITHTDRYLNLRISDARRADRGEYQA 621
I H++ LRI ++ D+G YQ
Sbjct: 350 --AIGHSESV--LRIESVKKEDKGMYQC 373
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 472 FTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA 531
FT Q G P VSW KDG I S S L I D+G +C N
Sbjct: 330 FTCQYTGNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDR 379
Query: 532 GHSITKARLRL 542
+ A L+L
Sbjct: 380 ESAEASAELKL 390
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 473 TVQVE----GIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTA 527
TV++E G P P + W + DG I +R+ R N I L I D G +C A
Sbjct: 222 TVKLECFALGNPVPTILWRRADGKPI--ARKARRHKSNGI--LEIPNFQQEDAGSYECVA 277
Query: 528 TNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE 587
N G ++ K +L A P Q + + M E + + G P PT RWL NG+
Sbjct: 278 ENSRGKNVAKGQLTFYAQPNW---VQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD 334
Query: 588 PLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
PL + R +I L I+ +D G YQ N G +S ++V
Sbjct: 335 PLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 20/190 (10%)
Query: 448 SPAAAPSFIR-ALHDTTAL--EDEKVEFTVQVEGIPTPKVSWYKDG--FEIFSSRRQRIV 502
P + P F++ H L E++KV+ + +V+G P P + W +G +I R +V
Sbjct: 1 GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVV 60
Query: 503 TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFE 561
D S LI + D G +C ATN G +++ A+L+ + + +
Sbjct: 61 ---DGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRG 117
Query: 562 MGEIIKLKVSMAGMPPPTAR----WLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRG 617
G ++ + G PP + W+ N P R ++ NL I+ ++D G
Sbjct: 118 QGMVL-----LCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKSDVG 170
Query: 618 EYQAHGVNSL 627
Y N++
Sbjct: 171 NYTCVVTNTV 180
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
A P++++ ++D +E V + + G P P W K+G + + R +I + TL
Sbjct: 294 AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTL 349
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
I L D G +C A N+ G + A L + A
Sbjct: 350 NITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 25/163 (15%)
Query: 495 SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRL---- 550
S + R + L I + D G C TN T ++ PPT +
Sbjct: 144 SYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTN------TVTNHKVLGPPTPLILRND 197
Query: 551 -------PK---QYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLTSGGRYEITH 599
PK Q+ + + E G +KL+ G P PT W +G+P+ R H
Sbjct: 198 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR---RH 254
Query: 600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
+ L I + ++ D G Y+ NS G++VA +T +P
Sbjct: 255 KSNGI-LEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP 296
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 18/190 (9%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
+ P FI+ D + F Q G P P+V+W K G ++ S R + I D +
Sbjct: 5 SPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 511 IIHQA--ALMDEGEIKCTATNRAGHSITKARLRL----EAP---PTIRLPKQYEDGLLFE 561
+ Q DE +C A N G A+L + + P P I + Q + + E
Sbjct: 65 LRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLK---VVE 121
Query: 562 MGEIIKLKVSMAGMPPPTARWLHN---GEPLTSGGRYEITHTDRYLNLRISDARRADRGE 618
+ + +G P P W + +P TS GR + R L+I + D+G+
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQL---RSGGLQIESSEETDQGK 178
Query: 619 YQAHGVNSLG 628
Y+ NS G
Sbjct: 179 YECVASNSAG 188
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 18/188 (9%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
P FI+ D + F Q G P P+V+W K G ++ S R + I D ++
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 513 HQA--ALMDEGEIKCTATNRAGHSITKARLRL----EAP---PTIRLPKQYEDGLLFEMG 563
Q DE +C A N G A+L + + P P I + Q + + E
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK---VVERT 123
Query: 564 EIIKLKVSMAGMPPPTARWLHN---GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
+ + +G P P W + +P S GR + R L+I + D+G+Y+
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL---RSGALQIESSEETDQGKYE 180
Query: 621 AHGVNSLG 628
NS G
Sbjct: 181 CVATNSAG 188
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 67/170 (39%), Gaps = 15/170 (8%)
Query: 478 GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK 537
G P P+++W+KD + S + L I + D+G+ +C ATN AG +
Sbjct: 134 GNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSS 193
Query: 538 -----ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG 592
R++ AP LP +E G + + G P P +W+ E LT
Sbjct: 194 PANLYVRVQNVAPRFSILPMSHE----IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPE 249
Query: 593 GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
+ L ++D + D Y ++SLG A +TV P
Sbjct: 250 DDMPVGRN----VLELTDVK--DSANYTCVAMSSLGVIEAVAQITVKSLP 293
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 23/151 (15%)
Query: 477 EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI----STLIIHQAALMDEGEIKCTATNRAG 532
+G P P WYK F ++R+Q +V ++ + TLII A + D G+ C N G
Sbjct: 273 QGYPVPVFRWYK--FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG 330
Query: 533 HSITKARLRLEAPPTIRL--PKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
+ L + AP + ++ P Q D G G P T W+ +G+
Sbjct: 331 GESVETVLTVTAPLSAKIDPPTQTVD-----FGRPAVFTCQYTGNPIKTVSWMKDGK--- 382
Query: 591 SGGRYEITHTDRYLNLRISDARRADRGEYQA 621
I H++ LRI ++ D+G YQ
Sbjct: 383 -----AIGHSESV--LRIESVKKEDKGMYQC 406
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 89/225 (39%), Gaps = 15/225 (6%)
Query: 453 PSFIR-ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRI-----VTDND 506
P IR A + T V G PTP++SW DG +I ++ R ++ V +
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEII 566
+S L I D G KC A ++ G + A+L + P IR Q E + GE +
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIR---QMEKKAIV-AGETL 544
Query: 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
+ +AG P + W + L + ++ + + R +D+ Y N
Sbjct: 545 IVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVE--RNSDQATYTCVAKNQ 602
Query: 627 LGEDVASFL---VTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDD 668
G L V V R +P + +G+ +TL S P D
Sbjct: 603 EGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGD 647
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%)
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
S L I G C A N AGH L + PP L + F G K
Sbjct: 677 SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDK---AFAQGSDAK 733
Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY----LNLRISDARRADRGEYQAHG 623
++ G P P W T G ++ +D L + + ++ + G Y
Sbjct: 734 VECKADGFPKPQVTW-KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEA 792
Query: 624 VNSLGEDVASFLV 636
+N +G +++ ++
Sbjct: 793 INGIGSGLSAVIM 805
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 42/95 (44%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
++ P + L DTT D +F V+ G P P W KDG I + ++ D
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
L IH+ D G CT N AG + +L ++A
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 565 IIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624
+ K V G P PTA W +G+ +T GG+Y+++ L I +D G Y
Sbjct: 23 VAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVK 82
Query: 625 NSLGEDVASFLVTV 638
NS G +S +T+
Sbjct: 83 NSAGSVSSSCKLTI 96
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 8/184 (4%)
Query: 455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQ 514
F++ + A+E + V G P P +W + G E+ R ++ S L+I
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR-GEEVIQLRSKKYSLLGG-SNLLISN 281
Query: 515 AALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG 574
D G C T + + A L + PP + L I+ + +++G
Sbjct: 282 VTDDDSGTYTCVVTYKNENISASAELTVLVPPWFL---NHPSNLYAYESMDIEFECAVSG 338
Query: 575 MPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF 634
P PT W+ NG+ + ++I NLRI ++D G YQ N G +S
Sbjct: 339 KPVPTVNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSA 395
Query: 635 LVTV 638
+ V
Sbjct: 396 QLIV 399
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 438 SEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR 497
+E ++ + + + P F+ + A E +EF V G P P V+W K+G + S
Sbjct: 298 NENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSD 357
Query: 498 RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
+IV +++ L + ++ DEG +C A N AG++ + A+L + P
Sbjct: 358 YFQIVGGSNLRILGVVKS---DEGFYQCVAENEAGNAQSSAQLIVPKP 402
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 70/181 (38%), Gaps = 16/181 (8%)
Query: 455 FIRALHDTTALEDEKVEFTVQVE---GIPTPKVSWYKDGFEI---FSSRRQRIVTDNDIS 508
F+ D + V E G+P + W KDG + R+Q++ + +
Sbjct: 24 FVSEPSDAVTMRGGNVLLNCSAESDRGVPV--IKWKKDGLILALGMDDRKQQLPNGSLLI 81
Query: 509 TLIIHQAALM-DEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
I+H DEG +C A+ SI ++ +R Q E F MG+ +
Sbjct: 82 QNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAF-MGDTVL 140
Query: 568 LKVSMAGMPPPTARWLHNGE---PLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624
LK + G P PT W N + P+ R + + L+IS + D G Y+
Sbjct: 141 LKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA---LQISRLQPGDSGVYRCSAR 197
Query: 625 N 625
N
Sbjct: 198 N 198
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 8/172 (4%)
Query: 455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQ 514
F+ TA + V +V G P P + W K+ ++ V L I +
Sbjct: 124 FLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISR 183
Query: 515 AALMDEGEIKCTATNRAG-HSITKARLRLEAPPTIRLP---KQYEDGLLFEMGEIIKLKV 570
D G +C+A N A + +A +R+ + P + Q ++ G+ L+
Sbjct: 184 LQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLEC 243
Query: 571 SMAGMPPPTARWLHNGEPL-TSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
++G PPP+ WL E + +Y + NL IS+ D G Y
Sbjct: 244 CVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS---NLLISNVTDDDSGTYTC 292
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 33/209 (15%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS------SRRQRIVTDND 506
P + D + E + EG PTP + WYK G + + S R + + +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 507 ISTLIIH-QAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEI 565
I+H + + DEG C A N G +++ LE +Q ++ +GE
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD-ASLEVAILRDDFRQNPSDVMVAVGEP 128
Query: 566 IKLKVSMA-GMPPPTARWLHNGEPLTS--------GGRYEITHTDRYLNLRISDARRADR 616
++ G P PT W +G PL GG+ IT+T R++D
Sbjct: 129 AVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYT-----------RKSDA 177
Query: 617 GEYQAHGVNSLGE---DVASFLVTVTDRP 642
G+Y G N +GE +VA TV +RP
Sbjct: 178 GKYVCVGTNMVGERESEVAEL--TVLERP 204
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 24/174 (13%)
Query: 474 VQVEGIPTPKV----SWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529
+ V +PTP + +K +FS+ + NDI + + A+L D+G+ C A +
Sbjct: 593 IHVGELPTPVCKNLDTLWKLNATMFSN------STNDILIMELKNASLQDQGDYVCLAQD 646
Query: 530 RAG---HSITKARLRLE-APPTI--RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWL 583
R H + + LE PTI L Q +GE I++ + +G PPP W
Sbjct: 647 RKTKKRHCVVRQLTVLERVAPTITGNLENQTTS-----IGESIEVSCTASGNPPPQIMWF 701
Query: 584 HNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG-EDVASFLV 636
+ E L + +R NL I R+ D G Y + LG V +F +
Sbjct: 702 KDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 753
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 5/132 (3%)
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEII 566
+STL I D+G C A++ +R+ P + E + +GE +
Sbjct: 289 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERV 348
Query: 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
++ G PPP +W NG PL S + H L I + D G Y N
Sbjct: 349 RIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV-----LTIMEVSERDTGNYTVILTNP 403
Query: 627 LGEDVASFLVTV 638
+ ++ S +V++
Sbjct: 404 ISKEKQSHVVSL 415
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
AP+ L + T E +E + G P P++ W+KD + IV + L
Sbjct: 665 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED--SGIVLKDGNRNL 722
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
I + DEG C A + G + +A +E
Sbjct: 723 TIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 464 ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEI 523
A E+V + G P P++ WYK+G + S+ T L I + + D G
Sbjct: 342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH-----TIKAGHVLTIMEVSERDTGNY 396
Query: 524 KCTATN-----RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP 578
TN + H ++ L + PP I ++ G L ++ +PPP
Sbjct: 397 TVILTNPISKEKQSHVVS---LVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP 453
>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human
Fibronectin Type Iii Domain Containing Protein 3a
Length = 110
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV---EDTELMVSGLEPGWRYQFRI 423
+RW PP DGGSP+ Y VE SP + P V + E VS L PG Y FR+
Sbjct: 28 LRWGPPLVDGGSPISCYSVEM----SPI-EKDEPREVYQGSEVECTVSSLLPGKTYSFRL 82
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
A N +GF GP SE +T +P + PS
Sbjct: 83 RAANKMGF---GPFSEKCDIT--TAPGSGPS 108
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 706 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV---EDTELMVSGLEPGWRYQFRI 762
+RW PP DGGSP+ Y VE SP + P V + E VS L PG Y FR+
Sbjct: 28 LRWGPPLVDGGSPISCYSVEM----SPI-EKDEPREVYQGSEVECTVSSLLPGKTYSFRL 82
Query: 763 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
A N +GF GP SE +T +P + PS
Sbjct: 83 RAANKMGF---GPFSEKCDIT--TAPGSGPS 108
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 446 QRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
+ P P F + + D +E F +VEG P P+V W+KD + SR +I D
Sbjct: 35 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE 94
Query: 506 DIS-TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
+ + +L I + D+ + C A N G + A L +E
Sbjct: 95 EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR-YLNLRISDARRADRGEYQA 621
G + + G P P W + P+ ++I + + +L IS+ D +Y
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 622 HGVNSLGE 629
VNSLGE
Sbjct: 116 KAVNSLGE 123
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 446 QRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
+ P P F + + D +E F +VEG P P+V W+KD + SR +I D
Sbjct: 35 EEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE 94
Query: 506 DIS-TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
+ + +L I + D+ + C A N G + A L +E
Sbjct: 95 EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 33.5 bits (75), Expect = 0.74, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR-YLNLRISDARRADRGEYQA 621
G + + G P P W + P+ ++I + + +L IS+ D +Y
Sbjct: 56 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Query: 622 HGVNSLGE 629
VNSLGE
Sbjct: 116 KAVNSLGE 123
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 30/207 (14%)
Query: 472 FTVQVEGIPTPK-VSWYKDGFEIFSSRRQRIVT---DNDISTLIIHQAALMDEGEIKCTA 527
F QV G K +SW+ E S +QRI D+D STL I+ A + D G KC
Sbjct: 22 FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
Query: 528 TNRAGHSITKA-------RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA 580
T G +L + PT P+++++ GE + + PPT
Sbjct: 82 TAEDGTQSEATVNVKIFQKLMFKNAPT---PQEFKE------GEDAVIVCDVVSSLPPTI 132
Query: 581 RWLHNGEP--LTSGGRYEITHTDRYLNLRISDARRADRGEYQAHG-VNSLGE-DVASFLV 636
W H G L R+ I ++ YL +R ++ D G Y+ G + + GE + V
Sbjct: 133 IWKHKGRDVILKKDVRF-IVLSNNYLQIR--GIKKTDEGTYRCEGRILARGEINFKDIQV 189
Query: 637 TVTDRPLPPGKAKVV---MTLGKSVTL 660
V P + +V LG+SVTL
Sbjct: 190 IVNVPPTVQARQSIVNATANLGQSVTL 216
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 7/167 (4%)
Query: 476 VEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT--NRAGH 533
V +P P + W G ++ + R + ++ + L I DEG +C R
Sbjct: 125 VSSLP-PTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEI 182
Query: 534 SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG 593
+ ++ + PPT++ +Q +G+ + L G P PT W +GEP+ +
Sbjct: 183 NFKDIQVIVNVPPTVQ-ARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE 241
Query: 594 RYEITH--TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
+ H +D L I + + D EY N GE AS + V
Sbjct: 242 EDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRR--QRIVTDNDISTLIIHQ 514
+++ + TA + V +G P P +SW KDG I + ++ + +D S L I
Sbjct: 201 QSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRN 260
Query: 515 AALMDEGEIKCTATNRAGHSITKARLRLEA 544
DE E C A N+AG L++ A
Sbjct: 261 VDKNDEAEYVCIAENKAGEQDASIHLKVFA 290
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 16/119 (13%)
Query: 118 KAKLLMKRDRAAYTE------LKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWY 171
K K+ + + AY E L+ AC+ +Q+ R L MRK+ ++ M++ A IQ++
Sbjct: 746 KTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWL-MRKK---YMRMRRAAITIQRYV 801
Query: 172 RNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLI 230
R + R A++L +AA I IQ+ R M R+RY +R ATI +Q R YL+
Sbjct: 802 RGHQ-ARCYATFLRRTRAAII-IQKFQR----MYVVRKRYQCMRDATIALQALLRGYLV 854
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 30/180 (16%)
Query: 38 IRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATL 97
+R+ I IQK RG+L+ R++Y+ M+ +A+ IQ + R Q A +AT
Sbjct: 767 LRAACIRIQKTIRGWLM----RKKYMRMRRAAITIQRYVRGHQ----------ARCYAT- 811
Query: 98 KQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHF 157
FL+ A I IQ + ++ KR Y ++ A +++Q R L + +
Sbjct: 812 -----FLRRTRAAIIIQKFQRMYVVRKR----YQCMRDATIALQALLRGYLV--RNKYQM 860
Query: 158 LLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTA 217
+L + K+ +IQ+ R L + H A + +Q YR +A R ++ + R+
Sbjct: 861 MLREHKSIIIQKHVRGW----LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV 916
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 1 MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQ 60
M R Y +R TI +Q L R L R++ + + K+I+IQK+ RG+L R
Sbjct: 828 MYVVRKRYQCMRDATIALQALLRGYLV--RNKYQMMLREHKSIIIQKHVRGWL----ARV 881
Query: 61 EYLAMKSSAVKIQEWYRNLQCMRQARQ 87
Y + V +Q YR + R+ ++
Sbjct: 882 HYHRTLKAIVYLQCCYRRMMAKRELKK 908
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 1 MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQ 60
+++ R+D LRA I IQ R L MR+ ++ +R I IQ+Y RG+ +
Sbjct: 759 LEKIRAD--KLRAACIRIQKTIRGWL-MRK---KYMRMRRAAITIQRYVRGH--QARCYA 810
Query: 61 EYLAMKSSAVKIQEWYR------NLQCMRQARQQYLALKHATL-KQREEFLKLKHATIAI 113
+L +A+ IQ++ R QCMR A AL L + + + + +H +I I
Sbjct: 811 TFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIII 870
Query: 114 QTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMR 151
Q + L R Y +A V +Q +R + R
Sbjct: 871 QKHVRGWL----ARVHYHRTLKAIVYLQCCYRRMMAKR 904
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 16/172 (9%)
Query: 466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALM-----DE 520
+ E E +V P P VSW ++ + ++DN + L + ++ DE
Sbjct: 16 QGEDAEVVCRVSSSPAPAVSW------LYHNEEVTTISDNRFAMLANNNLQILNINKSDE 69
Query: 521 GEIKCTATNRAGHSIT--KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP 578
G +C A I + + PP I +P++ + E GE + +G P P
Sbjct: 70 GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA-ERGEEMTFSCRASGSPEP 128
Query: 579 TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630
W NG+ + +Y + ++ L +R + +D G Y N GED
Sbjct: 129 AISWFRNGKLIEENEKYILKGSNTELTVR--NIINSDGGPYVCRATNKAGED 178
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
+ TA E++ F+ + G P P +SW+++G I ++ + + L + D
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLI--EENEKYILKGSNTELTVRNIINSDG 164
Query: 521 GEIKCTATNRAGHSITKARLRL 542
G C ATN+AG +A L++
Sbjct: 165 GPYVCRATNKAGEDEKQAFLQV 186
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 16/172 (9%)
Query: 466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALM-----DE 520
+ E E +V P P VSW ++ + ++DN + L + ++ DE
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSW------LYHNEEVTTISDNRFAMLANNNLQILNINKSDE 165
Query: 521 GEIKCTATNRAGHSIT--KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP 578
G +C A I + + PP I +P++ + E GE + +G P P
Sbjct: 166 GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA-ERGEEMTFSCRASGSPEP 224
Query: 579 TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630
W NG+ + +Y + ++ L +R + +D G Y N GED
Sbjct: 225 AISWFRNGKLIEENEKYILKGSNTELTVR--NIINSDGGPYVCRATNKAGED 274
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 14/180 (7%)
Query: 472 FTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR 530
FT G P + WY G +I S++R + + S L I+ A + D G +C AT+
Sbjct: 24 FTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 82
Query: 531 AGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
G + +A + LE + ++ F+ GE ++ ++ P P WL++ E +T
Sbjct: 83 KGQT-QEATVVLEIYQKLTF-REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 140
Query: 591 --SGGRYEITHTDRYLNLRISDARRADRGEYQAHG-VNSLGE-DVASFLVTVTDRPLPPG 646
S R+ + + + ++D G Y+ G V + GE D +V V +PP
Sbjct: 141 TISDNRFAMLANNNLQI---LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN---VPPA 194
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
+ TA E++ F+ + G P P +SW+++G I ++ + + L + D
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLI--EENEKYILKGSNTELTVRNIINSDG 260
Query: 521 GEIKCTATNRAGHSITKARLRL 542
G C ATN+AG +A L++
Sbjct: 261 GPYVCRATNKAGEDEKQAFLQV 282
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 13/192 (6%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD--N 505
S A P IR + F G P P + W K+G ++ ++ + V +
Sbjct: 4 SAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 63
Query: 506 DISTLIIHQA-ALMDEGEIKCTATNRAGHSITK-ARLRL----EAPPTIRLPKQYEDGLL 559
IS L I A D+ +C A N G +++ A L + + P + Q +
Sbjct: 64 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 123
Query: 560 FEMGEIIKLKVSMAGMPPPTARWLHNGEPL-TSGGRYEITHTDRYLNLRISDARRADRGE 618
E+G + + G P P W+ N + S RY + D +L +I ++R D+G+
Sbjct: 124 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK--DGFL--QIENSREEDQGK 179
Query: 619 YQAHGVNSLGED 630
Y+ NS+G +
Sbjct: 180 YECVAENSMGTE 191
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
GE + G P PT WL G+ L++ R+++T T IS + +D G Y
Sbjct: 23 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 82
Query: 623 GVNSLGEDVASFLVTV 638
NS G+ A F +T+
Sbjct: 83 VENSEGKQEAEFTLTI 98
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%)
Query: 463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGE 522
T E E F+ +G P P V+W + G + +S R ++ T ST I DEG
Sbjct: 19 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGN 78
Query: 523 IKCTATNRAG 532
N G
Sbjct: 79 YSVVVENSEG 88
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
GE + G P PT WL G+ L++ R+++T T IS + +D G Y
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 88
Query: 623 GVNSLGEDVASFLVTV 638
NS G+ A F +T+
Sbjct: 89 VENSEGKQEAEFTLTI 104
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%)
Query: 463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGE 522
T E E F+ +G P P V+W + G + +S R ++ T ST I DEG
Sbjct: 25 TVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGN 84
Query: 523 IKCTATNRAG 532
N G
Sbjct: 85 YSVVVENSEG 94
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 25/165 (15%)
Query: 472 FTVQVEGIPTPK-VSWYKDGFEIFSSRRQRIVT---DNDISTLIIHQAALMDEGEIKCTA 527
F QV G K +SW+ E S +QRI D+D STL I+ A + D G KC
Sbjct: 22 FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
Query: 528 TNRAGHSITKA-------RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA 580
T G +L + PT P+++++ GE + + PPT
Sbjct: 82 TAEDGTQSEATVNVKIFQKLMFKNAPT---PQEFKE------GEDAVIVCDVVSSLPPTI 132
Query: 581 RWLHNGEP--LTSGGRYEITHTDRYLNLRISDARRADRGEYQAHG 623
W H G L R+ I ++ YL +R ++ D G Y+ G
Sbjct: 133 IWKHKGRDVILKKDVRF-IVLSNNYLQIR--GIKKTDEGTYRCEG 174
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 13/190 (6%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD--NDI 507
A P IR + F G P P + W K+G ++ ++ + V + I
Sbjct: 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 508 STLIIHQA-ALMDEGEIKCTATNRAGHSITK-ARLRL----EAPPTIRLPKQYEDGLLFE 561
S L I A D+ +C A N G +++ A L + + P + Q + E
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 562 MGEIIKLKVSMAGMPPPTARWLHNGEPL-TSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
+G + + G P P W+ N + S RY + D +L +I ++R D+G+Y+
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK--DGFL--QIENSREEDQGKYE 179
Query: 621 AHGVNSLGED 630
NS+G +
Sbjct: 180 CVAENSMGTE 189
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 421 FRITAENVVGFSEPGPLSEPLTVTY---QRSPAAAPSFIRALHDTTALEDEKVEFTVQVE 477
+ AEN VG + +S T+T ++PA P + V T +
Sbjct: 80 YECVAENGVGDA----VSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAI 135
Query: 478 GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK 537
G PTP + W K+ ++ S + + D L I + D+G+ +C A N G +K
Sbjct: 136 GNPTPNIYWIKNQTKVDMSNPRYSLKD---GFLQIENSREEDQGKYECVAENSMGTEHSK 192
Query: 538 A 538
A
Sbjct: 193 A 193
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 360 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY 419
LD V + W+PP DGGS V Y +E R W + T + GL G +Y
Sbjct: 22 LDEAVI-LSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRY--TYTTIEGLRAGKQY 78
Query: 420 QFRITAENVVGFSEPGPLSEPLTV 443
+FRI AEN G S+P + P+ +
Sbjct: 79 EFRIIAENKHGQSKPCEPTAPVLI 102
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY 758
LD V + W+PP DGGS V Y +E R W + T + GL G +Y
Sbjct: 22 LDEAVI-LSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRY--TYTTIEGLRAGKQY 78
Query: 759 QFRITAENVVGFSEPGPLSEPLTV 782
+FRI AEN G S+P + P+ +
Sbjct: 79 EFRIIAENKHGQSKPCEPTAPVLI 102
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
A P FI + T E + F +V P V+W+KD E+ S + + + L
Sbjct: 481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL 540
Query: 511 IIHQAALMDEGEIKCTATNRAG 532
I++ D+GE A N G
Sbjct: 541 TINRVKGDDKGEYTVRAKNSYG 562
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR-IVTDNDISTLI 511
P FI+ + + E +V G+P P VSWY +G + S + IV++ + +LI
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
D G C A NRAG + +L + A
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 553 QYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDAR 612
Q + + + G ++ ++G+P P W NG + S +++ +++ L+ I +
Sbjct: 10 QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVV 69
Query: 613 RA-DRGEYQAHGVNSLGEDVASFLV 636
RA D G Y N GE A+F V
Sbjct: 70 RASDAGAYACVAKNRAGE--ATFTV 92
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI-FSSRRQRIVTDNDI-ST 509
AP FI LE + V+ Q+ IP PK+ W ++ + F++ R + DN T
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP 551
L+I D G +A N AG + RL + A P LP
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY--LNLRISDARRADRGEYQ 620
G+ +KL+ ++ +PPP W N E + + D + L I D + D G Y
Sbjct: 30 GDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYT 89
Query: 621 AHGVNSLGEDVASFLVTVTDRP 642
VN G + + VT RP
Sbjct: 90 VSAVNEAGVTTCNTRLDVTARP 111
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
S A AP F L E V FT +V G P PK+ W+KDG +I + +
Sbjct: 3 SNATAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLD 62
Query: 508 STLIIHQAA--LMDEGEIKCTATNRAGHSITKARLRLEA 544
T +H A L D+G A N G RL ++A
Sbjct: 63 GTCSLHTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQA 101
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEII 566
+STL I D+G C A++ +R+ P + E + +GE +
Sbjct: 159 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERV 218
Query: 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
++ G PPP +W NG PL S + H L I + D G Y N
Sbjct: 219 RIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV-----LTIMEVSERDTGNYTVILTNP 273
Query: 627 LGEDVASFLVTVTDRPLPP 645
+ ++ S +V++ +PP
Sbjct: 274 ISKEKQSHVVSLVVY-VPP 291
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 464 ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEI 523
A E+V + G P P++ WYK+G + S+ T L I + + D G
Sbjct: 212 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNH-----TIKAGHVLTIMEVSERDTGNY 266
Query: 524 KCTATN-----RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP 578
TN + H ++ L + PP I ++ G L ++ +PPP
Sbjct: 267 TVILTNPISKEKQSHVVS---LVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP 323
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 418
+++R + W P +DG SP++ Y++E +P+ V + + T + V GL P
Sbjct: 30 TVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARS 88
Query: 419 YQFRITAENVVG 430
YQFR+ A N VG
Sbjct: 89 YQFRLCAVNDVG 100
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWR 757
+++R + W P +DG SP++ Y++E +P+ V + + T + V GL P
Sbjct: 30 TVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARS 88
Query: 758 YQFRITAENVVG 769
YQFR+ A N VG
Sbjct: 89 YQFRLCAVNDVG 100
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
+ AP F L E V FT +V G P PK+ W+KDG +I + + T
Sbjct: 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 510 LIIHQAA--LMDEGEIKCTATNRAGHSITKARLRLEA 544
+H A L D+G A N G RL ++A
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA 102
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD 601
+ PP IRLP+ + ++GE + L V G P P W G PL + R + +D
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVRTSD 76
Query: 602 RYLNLRISDARRADRGEYQ 620
+ A R+D GEY+
Sbjct: 77 FDTVFFVRQAARSDSGEYE 95
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 435 GPLSEPLTVTYQRSPAAAPS--FIRALHDTTALE-DEKVEFTVQVEGIPTPKVSWYKDGF 491
G L++P+T+ R A P R L T + E++ V +G P P+V W K G
Sbjct: 7 GTLAQPVTI---REIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGA 63
Query: 492 EIFSSRRQRIVTDNDISTLIIHQAALMDEGE 522
+ +SR +D D + + QAA D GE
Sbjct: 64 PLDTSRVHVRTSDFD-TVFFVRQAARSDSGE 93
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV---TDNDIS 508
AP + T + F V+V G P P+ WYK+G +I R RI ++++
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI--ERSDRIYWYWPEDNVC 62
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
L+I D I A N AG + + A L ++A
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 546 PTIRLPKQYE--DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR-YEITHTDR 602
P++ PK +E G +V + G P P W NG + R Y D
Sbjct: 1 PSMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGE 629
L I D D +N GE
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGE 87
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 117
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 355 PDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE-HRRTGSPYWVRASPHMVEDTELMVSGL 413
P + ++ T+ W+P G P Y++E ++ S W + H V+ T V GL
Sbjct: 22 PQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVANH-VKTTLYTVRGL 79
Query: 414 EPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
P Y F + A N G S+P P+S+P+ R+ + PS
Sbjct: 80 RPNTIYLFMVRAINPQGLSDPSPMSDPV-----RTQDSGPS 115
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 701 RDVFTIRWEPPEYDGGSPVLGYLVE-HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ 759
++ T+ W+P G P Y++E ++ S W + H V+ T V GL P Y
Sbjct: 29 KNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVANH-VKTTLYTVRGLRPNTIYL 86
Query: 760 FRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
F + A N G S+P P+S+P+ R+ + PS
Sbjct: 87 FMVRAINPQGLSDPSPMSDPV-----RTQDSGPS 115
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 453 PSFIRALHDT---TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN-DIS 508
P +RA T TA + V +G P P ++W KDG I + + N D S
Sbjct: 11 PPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGS 70
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
LII + DE E C A N+AG L++ A
Sbjct: 71 ELIIKKVDKSDEAEYICIAENKAGEQDATIHLKVFA 106
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL---TSGGRY 595
++ + PP++R +Q + + + L G P PT W +GEP+ + +Y
Sbjct: 5 QVIVNVPPSVRA-RQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKY 63
Query: 596 EITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
+ L ++ D ++D EY N GE A+ + V
Sbjct: 64 SFNYDGSELIIKKVD--KSDEAEYICIAENKAGEQDATIHLKV 104
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
APSF L D +E + V G P P+++W +G I + R + ++ L
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI---QYARSTCEAGVAELH 67
Query: 512 IHQAALMDEGEIKCTATNRAGH 533
I A D G C A N G
Sbjct: 68 IQDALPEDHGTYTCLAENALGQ 89
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
G+ L+ S+ G P P WL NG+P+ T L I DA D G Y
Sbjct: 26 GQDFVLQCSVRGTPVPRITWLLNGQPIQYA---RSTCEAGVAELHIQDALPEDHGTYTCL 82
Query: 623 GVNSLGEDVASFLVTV 638
N+LG+ S VTV
Sbjct: 83 AENALGQVSCSAWVTV 98
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 47/143 (32%)
Query: 636 VTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRXXXXXXXXXXXXD 695
+ + DRP PP K+ G++V L+W+ P+DDG I Y ++ D
Sbjct: 12 IQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQ-------------KAD 58
Query: 696 SPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPG 755
S++ FT+ +EH R S + TEL++ G
Sbjct: 59 KKSMEW--FTV-----------------IEHYH-------RTSATI---TELVI-----G 84
Query: 756 WRYQFRITAENVVGFSEPGPLSE 778
Y FR+ +EN+ G SE +++
Sbjct: 85 NEYYFRVFSENMCGLSEDATMTK 107
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE 426
+ W PP+ DG + + GY ++ S W H T ++ L G Y FR+ +E
Sbjct: 36 LTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHY-HRTSATITELVIGNEYYFRVFSE 94
Query: 427 NVVGFSEPGPLSE 439
N+ G SE +++
Sbjct: 95 NMCGLSEDATMTK 107
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRIVTDNDIST 509
A P+F +L D + E + V +++V+G P P VSW ++ + RR + +
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542
L I A D G C A N G +ARL +
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
+APPT ++ + G+ + + + + G P P WL N +P+ R +
Sbjct: 3 KAPPTFKVSLMDQS---VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEG 59
Query: 603 YL-NLRISDARRADRGEYQAHGVNSLG 628
L LRI A R D G Y VN G
Sbjct: 60 GLCRLRILAAERGDAGFYTCKAVNEYG 86
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 472 FTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR 530
FT G P + WY G +I S++R + + S L I+ A + D G +C AT+
Sbjct: 22 FTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 80
Query: 531 AGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
G + +A + LE + ++ F+ GE ++ ++ P P WL++ E +T
Sbjct: 81 KGQT-QEATVVLEIYQKLTF-REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT 138
Query: 591 S 591
+
Sbjct: 139 T 139
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGE--PLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
G + + + P T W +G+ P ++ +I +T L ++ D G Y
Sbjct: 33 GNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYN 92
Query: 621 AHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY 680
VN +G++ F++ D P P + V + + + EPE GG I Y E+
Sbjct: 93 CTAVNRIGQESLEFILVQADTPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEW 151
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN--DISTLIIHQAALMDEGEI 523
E +V T +V P+ +SW++DG + SS I N S L + + D G
Sbjct: 32 EGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNY 91
Query: 524 KCTATNRAGH 533
CTA NR G
Sbjct: 92 NCTAVNRIGQ 101
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 355 PDSPSLDR-----DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY----WVRASPHMVED 405
P SPS+D+ ++++ PE GG P+L Y E R G W A +E
Sbjct: 114 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 173
Query: 406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 439
+V GL+P Y R+ A N G E SE
Sbjct: 174 IVTIV-GLKPETTYAVRLAALNGKGLGEISAASE 206
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 545 PPTIR-LPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG--GRYEITHTD 601
PP I LP + + G+++ + + G P P W G + S GR+ I +TD
Sbjct: 5 PPKIEALPSD----ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD 60
Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVAS 633
L I D ++ D G Y N G D A+
Sbjct: 61 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSAT 92
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 453 PSFIRALHDTTALEDEKV-EFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN--DIST 509
P I AL ++++ KV G PTP+V+W G +I S + R +N D++T
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 510 LIIHQAALMDEGEIKCTATNRAG 532
LII D G + N G
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFG 87
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 14/132 (10%)
Query: 518 MDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP 577
++ + C A N G + ++ + P +++L EM + S+ G P
Sbjct: 223 LNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTA------VEMHHWC-IPFSVDGQPA 275
Query: 578 PTARWLHNGEPLTSGG-------RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630
P+ RWL NG L T R+ LR++ + G Y N G+
Sbjct: 276 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA 335
Query: 631 VASFLVTVTDRP 642
AS + D P
Sbjct: 336 SASIMAAFMDNP 347
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 545 PPTIR-LPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG--GRYEITHTD 601
PP I LP + + G+++ + + G P P W G + S GR+ I +TD
Sbjct: 7 PPKIEALPSD----ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTD 62
Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVAS 633
L I D ++ D G Y N G D A+
Sbjct: 63 DLTTLIIMDVQKQDGGLYTLSLGNEFGSDSAT 94
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 448 SPAAAPSFIRALHDTTALEDEKV-EFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN- 505
S P I AL ++++ KV G PTP+V+W G +I S + R +N
Sbjct: 2 SSRGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT 61
Query: 506 -DISTLIIHQAALMDEGEIKCTATNRAG 532
D++TLII D G + N G
Sbjct: 62 DDLTTLIIMDVQKQDGGLYTLSLGNEFG 89
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 23/163 (14%)
Query: 486 WYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT----KARLR 541
W K+G E+ ++R+ + I++ D GE C H ++ A +
Sbjct: 39 WTKNGVELTATRKNASNME-----YRINKPRAEDSGEYHCVY-----HFVSAPKANATIE 88
Query: 542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARW--LHNG---EPLTSGGRYE 596
++A P I K+ E+ G+ + G P P W NG E S GR+
Sbjct: 89 VKAAPDITGHKRSENK---NEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFF 145
Query: 597 ITHTDRYLNLRISDAR-RADRGEYQAHGVNSLGEDVASFLVTV 638
I + + Y L I + + D GEY+ + NS+G S ++ V
Sbjct: 146 IINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 478 GIPTPKVSWYKDGFEIF-----SSRRQRIVTDNDISTL-IIHQAALMDEGEIKCTATNRA 531
G P P+ W K +F SS R I+ + + L I++ D GE +C ATN
Sbjct: 118 GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSI 177
Query: 532 GHSITKARLRL 542
G + LR+
Sbjct: 178 GSASVSTVLRV 188
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 562 MGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
G+ + +++ P +W HNG L + T+T L L I D D G Y+A
Sbjct: 22 CGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRA 81
Query: 622 HGVNSLGE--DVASFLVTVTD 640
N GE D A+ VT D
Sbjct: 82 VCTNYKGEASDYATLDVTGGD 102
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 468 EKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTA 527
+ F + V+ PT +V WY +G E+ S + + + TL I D G +
Sbjct: 24 QNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVC 83
Query: 528 TNRAGHSITKARL 540
TN G + A L
Sbjct: 84 TNYKGEASDYATL 96
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
PAA I+ L D E VE ++ TP V W KD I S++ +V + ++
Sbjct: 8 PAA---IIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMA 63
Query: 509 TLIIHQAALMDEGEIKC 525
L+I A+L D GE C
Sbjct: 64 MLVIRGASLKDAGEYTC 80
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 12/98 (12%)
Query: 355 PDSPSLDRDVFT---IRWEPPEYDGGSPVLGYLVEHRR---TGSPYWVRASPHMVEDTEL 408
PD P++ T + W P +GG P+ + VE+++ G W+ A+ + + L
Sbjct: 21 PDRPTISTASETSVYVTWIP-RGNGGFPIQSFRVEYKKLKKVGD--WILAT-SAIPPSRL 76
Query: 409 MV--SGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
V +GLE G Y+FR+ A N++G SEP S P V+
Sbjct: 77 SVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 114
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 711 PEYDGGSPVLGYLVEHRR---TGSPYWVRASPHMVEDTELMV--SGLEPGWRYQFRITAE 765
P +GG P+ + VE+++ G W+ A+ + + L V +GLE G Y+FR+ A
Sbjct: 40 PRGNGGFPIQSFRVEYKKLKKVGD--WILAT-SAIPPSRLSVEITGLEKGISYKFRVRAL 96
Query: 766 NVVGFSEPGPLSEPLTVT 783
N++G SEP S P V+
Sbjct: 97 NMLGESEPSAPSRPYVVS 114
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 19/156 (12%)
Query: 486 WYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
W + F +F + +R L I D+G C ++ SITK+ +
Sbjct: 44 WLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSS---PSITKSVFS-KFI 99
Query: 546 PTIRLP----KQYEDGLLFE-------MGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR 594
P I +P K Y ++ + MG+ + L+ G P P RW EP+ S
Sbjct: 100 PLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA- 158
Query: 595 YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630
EI+ + L+I + + D G Y+ N G+D
Sbjct: 159 -EISTSGAV--LKIFNIQLEDEGIYECEAENIRGKD 191
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT-HTDRYLNLRISDARRA 614
D + + G+ + L ++ G PPP WL N + L S + R I+ A
Sbjct: 230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA 289
Query: 615 DRGEYQAHGVNSLGEDVASFLVTV 638
D G+Y N G + + F V+V
Sbjct: 290 DSGKYGLVVKNKYGSETSDFTVSV 313
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 37.7 bits (86), Expect = 0.038, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 472 FTVQVEGIPTPK-VSWYKDGFEIFSSRRQRIVT---DNDISTLIIHQAALMDEGEIKCTA 527
F QV G K +SW+ E S +QRI D+D STL I+ A + D G KC
Sbjct: 22 FLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81
Query: 528 TNRAG 532
T G
Sbjct: 82 TAEDG 86
>pdb|2VKX|A Chain A, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|B Chain B, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|C Chain C, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|D Chain D, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|E Chain E, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
pdb|2VKX|F Chain F, Human Ncam, Fn3 Domains 1 And 2, M610r Mutant
Length = 209
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 355 PDSPSLDR-----DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY----WVRASPHMVED 405
P SPS+D+ ++++ PE GG P+L Y E R G W A +E
Sbjct: 9 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 68
Query: 406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 439
+V GL+P Y R+ A N G E SE
Sbjct: 69 IVTIV-GLKPETTYAVRLAALNGKGLGEISAASE 101
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 696 SPSLDR-----DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY----WVRASPHMVEDTE 746
SPS+D+ ++++ PE GG P+L Y E R G W A +E
Sbjct: 11 SPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIV 70
Query: 747 LMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 778
+V GL+P Y R+ A N G E SE
Sbjct: 71 TIV-GLKPETTYAVRLAALNGKGLGEISAASE 101
>pdb|2VKW|A Chain A, Human Ncam, Fn3 Domains 1 And 2
pdb|2VKW|B Chain B, Human Ncam, Fn3 Domains 1 And 2
Length = 209
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 355 PDSPSLDR-----DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY----WVRASPHMVED 405
P SPS+D+ ++++ PE GG P+L Y E R G W A +E
Sbjct: 9 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 68
Query: 406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 439
+V GL+P Y R+ A N G E SE
Sbjct: 69 IVTIV-GLKPETTYAVRLAALNGKGLGEISAASE 101
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 696 SPSLDR-----DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY----WVRASPHMVEDTE 746
SPS+D+ ++++ PE GG P+L Y E R G W A +E
Sbjct: 11 SPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIV 70
Query: 747 LMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 778
+V GL+P Y R+ A N G E SE
Sbjct: 71 TIV-GLKPETTYAVRLAALNGKGLGEISAASE 101
>pdb|1WWA|X Chain X, Ngf Binding Domain Of Human Trka Receptor
pdb|1WWA|Y Chain Y, Ngf Binding Domain Of Human Trka Receptor
Length = 109
Score = 37.4 bits (85), Expect = 0.045, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 571 SMAGMPPPTARWLHNGEPLTSGG-------RYEITHTDRYLNLRISDARRADRGEYQAHG 623
S+ G P P+ RWL NG L T R+ LR++ + G Y
Sbjct: 27 SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA 86
Query: 624 VNSLGEDVASFLVTVTDRPL 643
N G+ AS + D P
Sbjct: 87 ANPFGQASASIMAAFMDNPF 106
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 66/184 (35%), Gaps = 15/184 (8%)
Query: 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRR-QRIVTDNDISTLIIHQAALMDEGEIKCTAT 528
V F G PTP +SW K+G E R I + +L++ D G C
Sbjct: 33 VRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVE 92
Query: 529 NRAGHSITKARLRL--EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH-- 584
N+ G L + +P L +G ++ + P +WL
Sbjct: 93 NKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHV 152
Query: 585 --NGEPLTSGGRYEITHTDRYLN--------LRISDARRADRGEYQAHGVNSLGEDVASF 634
NG + G +T +++ LR+++ D GEY N +G +F
Sbjct: 153 EVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAF 212
Query: 635 LVTV 638
++V
Sbjct: 213 WLSV 216
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 37.4 bits (85), Expect = 0.046, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 562 MGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
+GE I++ + +G PPP W + E L + +R NL I R+ D G Y
Sbjct: 24 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTC 81
Query: 622 HGVNSLG-EDVASFLV 636
+ LG V +F +
Sbjct: 82 QACSVLGCAKVEAFFI 97
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
AP+ L + T E +E + G P P++ W+KD + IV + L
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED--SGIVLKDGNRNLT 67
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
I + DEG C A + G + +A +E
Sbjct: 68 IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 37.4 bits (85), Expect = 0.049, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
+ P ++ + T D + G P P +SW K+GF F R R T + T
Sbjct: 6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGF-TFPGRDPR-ATIQEQGT 63
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARL 540
L I + D G C AT+ +G + A L
Sbjct: 64 LQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
LK G P P WL G T GR L+I + R +D G Y +S
Sbjct: 28 LKCKATGDPLPVISWLKEG--FTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSS 85
Query: 628 GEDVASFLVTVTD 640
GE S ++ VT+
Sbjct: 86 GETSWSAVLDVTE 98
>pdb|1WWW|X Chain X, Ngf In Complex With Domain 5 Of The Trka Receptor
pdb|1WWW|Y Chain Y, Ngf In Complex With Domain 5 Of The Trka Receptor
Length = 101
Score = 37.4 bits (85), Expect = 0.050, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 571 SMAGMPPPTARWLHNGEPLTSGG-------RYEITHTDRYLNLRISDARRADRGEYQAHG 623
S+ G P P+ RWL NG L T R+ LR++ + G Y
Sbjct: 23 SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA 82
Query: 624 VNSLGEDVASFLVTVTDRP 642
N G+ AS + D P
Sbjct: 83 ANPFGQASASIMAAFMDNP 101
>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578d
Length = 84
Score = 37.4 bits (85), Expect = 0.052, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
G ++L V ++G P RW +GE L S GR ++ LR+ AR D GEY
Sbjct: 11 GGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCD 69
Query: 623 GVNSLGEDVASFLVTVTD 640
+D FLV+V +
Sbjct: 70 A----PQDSRIFLVSVEE 83
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 37.0 bits (84), Expect = 0.054, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 574 GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA 611
G PPPT WLHNG+PL +I H + Y IS+
Sbjct: 31 GNPPPTLHWLHNGQPLRES---KIIHVEYYQEGEISEG 65
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, 30 Structures
Length = 93
Score = 37.0 bits (84), Expect = 0.065, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 29/71 (40%)
Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
L+V G P PTA W + ++ A+RAD G Y+ N L
Sbjct: 22 LEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL 81
Query: 628 GEDVASFLVTV 638
GED A F V V
Sbjct: 82 GEDEAIFEVIV 92
>pdb|2HAZ|A Chain A, Crystal Structure Of The First Fibronectin Domain Of Human
Ncam1
Length = 105
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 355 PDSPSLDR-----DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY----WVRASPHMVED 405
P SPS+D+ ++++ PE GG P+L Y E R G W A +E
Sbjct: 7 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 66
Query: 406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 439
+V GL+P Y R+ A N G E SE
Sbjct: 67 IVTIV-GLKPETTYAVRLAALNGKGLGEISAASE 99
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 696 SPSLDR-----DVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY----WVRASPHMVEDTE 746
SPS+D+ ++++ PE GG P+L Y E R G W A +E
Sbjct: 9 SPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIV 68
Query: 747 LMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 778
+V GL+P Y R+ A N G E SE
Sbjct: 69 TIV-GLKPETTYAVRLAALNGKGLGEISAASE 99
>pdb|1HE7|A Chain A, Human Nerve Growth Factor Receptor Trka
Length = 126
Score = 36.6 bits (83), Expect = 0.071, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 571 SMAGMPPPTARWLHNGEPLTSGG-------RYEITHTDRYLNLRISDARRADRGEYQAHG 623
S+ G P P+ RWL NG L T R+ LR++ + G Y
Sbjct: 23 SVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA 82
Query: 624 VNSLGEDVASFLVTVTDRPL 643
N G+ AS + D P
Sbjct: 83 ANPFGQASASIMAAFMDNPF 102
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%)
Query: 466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKC 525
E V+F + +G P P + W + S++ +T TL + A + D G C
Sbjct: 399 EGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLC 458
Query: 526 TATNRAGHSITKARLRLEA 544
A N G+ A L + +
Sbjct: 459 IAANAGGNDSMPAHLHVRS 477
>pdb|1FC1|A Chain A, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-And 2.8-Angstroms
Resolution
pdb|1FC1|B Chain B, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-And 2.8-Angstroms
Resolution
pdb|1FC2|D Chain D, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-and 2.8-angstroms
Resolution
Length = 224
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG ++ +++ +Q T +S L + +D E KC +N+A
Sbjct: 49 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 108
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 109 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 160
Query: 584 HNGEP 588
NG+P
Sbjct: 161 SNGQP 165
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS------SRRQRIVTDND 506
P + D + E + EG PTP + WYK G + + S R + + +
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 507 ISTLIIH-QAALMDEGEIKCTATNRAGHSIT 536
I+H + + DEG C A N G +++
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH----- 599
PP I ++ L+ GE L G P PT W GE + + +H
Sbjct: 9 PPRI---VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 600 TDRYLNLRISDAR--RADRGEYQAHGVNSLGEDVA 632
+ LRI R R D G Y N LGE V+
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS 100
>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From
Human Obscurin-Like Protein 1
Length = 104
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 448 SPAAAPSFIRALHDTTALE---DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD 504
S ++ P I + D +L E+V T ++ + P +WYKDG ++ S + D
Sbjct: 3 SGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMD 61
Query: 505 NDISTLIIHQAALMDEGEIKC 525
LI+ +A + D GE +C
Sbjct: 62 GRKHRLILPEAKVQDSGEFEC 82
>pdb|1E4K|A Chain A, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4K|B Chain B, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
Length = 225
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG ++ +++ +Q T +S L + +D E KC +N+A
Sbjct: 49 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 108
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 109 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 160
Query: 584 HNGEP 588
NG+P
Sbjct: 161 SNGQP 165
>pdb|1H3T|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(Mn2f)2
pdb|1H3T|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(Mn2f)2
pdb|1H3U|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(M3n2f)2
pdb|1H3U|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(M3n2f)2
pdb|1H3V|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2,Sg P212121
pdb|1H3V|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2,Sg P212121
pdb|1H3W|M Chain M, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2, Sg C2221
pdb|1H3Y|A Chain A, Crystal Structure Of A Human Igg1 Fc-Fragment,High Salt
Condition
pdb|1H3Y|B Chain B, Crystal Structure Of A Human Igg1 Fc-Fragment,High Salt
Condition
pdb|1H3X|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G0f)2
pdb|1H3X|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G0f)2
Length = 223
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG ++ +++ +Q T +S L + +D E KC +N+A
Sbjct: 47 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 106
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 107 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 158
Query: 584 HNGEP 588
NG+P
Sbjct: 159 SNGQP 163
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
P I+ P+ + GE ++L + G P T W+ + + ++ +++
Sbjct: 7 GPQIIQFPEDQK----VRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG 62
Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG 646
L I AR+ G Y N LG A +TV D+P PP
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 105
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 446 QRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
Q SP P F+R + + E V G P P V W K G ++ +S R D
Sbjct: 11 QGSP---PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 67
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
L++ A D G C A N AG + A + + PP
Sbjct: 68 AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 108
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 33/80 (41%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
G +LK + G PPP W G+ L + R L ++ A D G Y
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 88
Query: 623 GVNSLGEDVASFLVTVTDRP 642
N+ GE A+ VTV + P
Sbjct: 89 ARNAAGEAYAAAAVTVLEPP 108
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn Protein
Length = 102
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTA 527
+V+WYKDG ++ SS + R+ L++ QA + GE C A
Sbjct: 41 EVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEA 85
>pdb|1FRT|C Chain C, Crystal Structure Of The Complex Of Rat Neonatal Fc
Receptor With Fc
Length = 205
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG ++ +++ +Q T +S L + +D E KC +N+A
Sbjct: 33 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 92
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 93 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 144
Query: 584 HNGEP 588
NG+P
Sbjct: 145 SNGQP 149
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 446 QRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
Q SP P F+R + + E V G P P V W K G ++ +S R D
Sbjct: 11 QGSP---PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 67
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
L++ A D G C A N AG + A + + PP
Sbjct: 68 AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 108
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 33/80 (41%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
G +LK + G PPP W G+ L + R L ++ A D G Y
Sbjct: 29 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 88
Query: 623 GVNSLGEDVASFLVTVTDRP 642
N+ GE A+ VTV + P
Sbjct: 89 ARNAAGEAYAAAAVTVLEPP 108
>pdb|1FCC|A Chain A, Crystal Structure Of The C2 Fragment Of Streptococcal
Protein G In Complex With The Fc Domain Of Human Igg
pdb|1FCC|B Chain B, Crystal Structure Of The C2 Fragment Of Streptococcal
Protein G In Complex With The Fc Domain Of Human Igg
Length = 206
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG ++ +++ +Q T +S L + +D E KC +N+A
Sbjct: 34 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 93
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 94 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 145
Query: 584 HNGEP 588
NG+P
Sbjct: 146 SNGQP 150
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 446 QRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
Q SP P F+R + + E V G P P V W K G ++ +S R D
Sbjct: 10 QGSP---PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG 66
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
L++ A D G C A N AG + A + + PP
Sbjct: 67 AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 33/80 (41%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
G +LK + G PPP W G+ L + R L ++ A D G Y
Sbjct: 28 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 87
Query: 623 GVNSLGEDVASFLVTVTDRP 642
N+ GE A+ VTV + P
Sbjct: 88 ARNAAGEAYAAAAVTVLEPP 107
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT-HTDRYLNLRISDARRA 614
D + + G+ + L ++ G PPP WL N + L + R I+ A
Sbjct: 125 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTA 184
Query: 615 DRGEYQAHGVNSLGEDVASFLVTV 638
D G+Y N G + + F V+V
Sbjct: 185 DSGKYGLVVKNKYGSETSDFTVSV 208
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS--SRRQRIVTDNDI 507
+AP + A D E E + P V W + S SR RI ND
Sbjct: 350 CSAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLND- 406
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
TL L D G C TN AG+S A L + T
Sbjct: 407 GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT 446
>pdb|2KBG|A Chain A, Solution Structure Of The Second Fibronectin Type-Iii
Module Of Ncam2
Length = 114
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 375 DGGSPVLGYLVEHR-RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE 433
DGG+P+L Y+V++R + W+ +D +++ L+ Y+ +ITA N +G+SE
Sbjct: 33 DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD-HIILEHLQWTMGYEVQITAANRLGYSE 91
Query: 434 P 434
P
Sbjct: 92 P 92
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 714 DGGSPVLGYLVEHR-RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE 772
DGG+P+L Y+V++R + W+ +D +++ L+ Y+ +ITA N +G+SE
Sbjct: 33 DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD-HIILEHLQWTMGYEVQITAANRLGYSE 91
Query: 773 P 773
P
Sbjct: 92 P 92
>pdb|3RY6|A Chain A, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
pdb|3RY6|B Chain B, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 214
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG ++ +++ +Q T +S L + +D E KC +N+A
Sbjct: 41 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 100
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 101 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 152
Query: 584 HNGEP 588
NG+P
Sbjct: 153 SNGQP 157
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS--SRRQRIVTDN 505
S ++ P + A D E E + P V W + S SR RI N
Sbjct: 3 SGSSGPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLN 60
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
D TL L D G C TN AG+S A L + + P+
Sbjct: 61 D-GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGPS 101
>pdb|1T83|A Chain A, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T83|B Chain B, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T89|A Chain A, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
pdb|1T89|B Chain B, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
Length = 224
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 48 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 107
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 108 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 159
Query: 584 HNGEP 588
NG+P
Sbjct: 160 SNGQP 164
>pdb|1X3D|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Fibronectin Type-Iii Domain Containing Protein 3a
Length = 118
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 626 SLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY 680
S G A T++ P P ++ S+TL W P D+G KI N+++E+
Sbjct: 2 SSGSSGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGS-KIQNFVLEW 55
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 579 TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEY 619
T +W NG + R I+H R+ L I D R D G+Y
Sbjct: 38 TGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDY 78
>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa0343 Protein
Length = 127
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 638 VTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY 680
V D P PP ++ L KSV LSW+ P DD I +I+EY
Sbjct: 13 VYDVPNPPFDLELTDQLDKSVQLSWT-PGDDNNSPITKFIIEY 54
Score = 29.6 bits (65), Expect = 9.5, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 360 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS-GLEPGWR 418
LD+ V + W P + D SP+ +++E+ + V T+ L P
Sbjct: 29 LDKSV-QLSWTPGD-DNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVN 86
Query: 419 YQFRITAENVVGFSEPGPLSEP-LTVTYQ--RSPAAAPS 454
Y FR+ A N +G S P SE LT + ++P + PS
Sbjct: 87 YSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPS 125
Score = 29.6 bits (65), Expect = 9.5, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS-GLEPGWR 757
LD+ V + W P + D SP+ +++E+ + V T+ L P
Sbjct: 29 LDKSV-QLSWTPGD-DNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVN 86
Query: 758 YQFRITAENVVGFSEPGPLSEP-LTVTYQ--RSPAAAPS 793
Y FR+ A N +G S P SE LT + ++P + PS
Sbjct: 87 YSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSGPS 125
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRRTGSP---YWVRASPHMVEDTELMVSGLEPGWRYQFRI 423
+ W+PP + GY++++ + GSP R P + TE ++GLEPG Y +
Sbjct: 201 VSWQPPRAR----ITGYIIKYEKPGSPPREVVPRPRPGV---TEATITGLEPGTEYTIYV 253
Query: 424 TA 425
A
Sbjct: 254 IA 255
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 706 IRWEPPEYDGGSPVLGYLVEHRRTGSP---YWVRASPHMVEDTELMVSGLEPGWRYQFRI 762
+ W+PP + GY++++ + GSP R P + TE ++GLEPG Y +
Sbjct: 201 VSWQPPRAR----ITGYIIKYEKPGSPPREVVPRPRPGV---TEATITGLEPGTEYTIYV 253
Query: 763 TA 764
A
Sbjct: 254 IA 255
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRRTGSP---YWVRASPHMVEDTELMVSGLEPGWRYQFRI 423
+ W+PP + GY++++ + GSP R P + E T ++GLEPG Y +
Sbjct: 220 VSWQPPRAR----ITGYIIKYEKPGSPPREVVPRPRPGVTEAT---ITGLEPGTEYTIYV 272
Query: 424 TA 425
A
Sbjct: 273 IA 274
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 706 IRWEPPEYDGGSPVLGYLVEHRRTGSP---YWVRASPHMVEDTELMVSGLEPGWRYQFRI 762
+ W+PP + GY++++ + GSP R P + E T ++GLEPG Y +
Sbjct: 220 VSWQPPRAR----ITGYIIKYEKPGSPPREVVPRPRPGVTEAT---ITGLEPGTEYTIYV 272
Query: 763 TA 764
A
Sbjct: 273 IA 274
>pdb|2DM4|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
SorlaLR11
Length = 108
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 355 PDSP-----SLDRD---VFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV--RASPHMVE 404
PD+P SL R+ V W PP + G + Y+VE+ R+GS W RA+ + E
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHGL-IREYIVEYSRSGSKMWASQRAASNFTE 66
Query: 405 DTELMVSGLEPGWRYQFRITA 425
L+V+ L Y R+ A
Sbjct: 67 IKNLLVNTL-----YTVRVAA 82
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 697 PSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV--RASPHMVEDTELMVSGLEP 754
P V W PP + G + Y+VE+ R+GS W RA+ + E L+V+ L
Sbjct: 19 PREAEGVIVGHWAPPIHTHGL-IREYIVEYSRSGSKMWASQRAASNFTEIKNLLVNTL-- 75
Query: 755 GWRYQFRITA 764
Y R+ A
Sbjct: 76 ---YTVRVAA 82
>pdb|2DN7|A Chain A, Solution Structures Of The 6th Fn3 Domain Of Human
Receptor- Type Tyrosine-Protein Phosphatase F
Length = 107
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE----DTELMVSGLEPGWRYQFR 422
++W PP+ G +LGY +++ R A P+ ++ D V+GL G Y FR
Sbjct: 25 LQWHPPKELPGE-LLGYRLQYCRAD-----EARPNTIDFGKDDQHFTVTGLHKGTTYIFR 78
Query: 423 ITAENVVGFSE 433
+ A+N G E
Sbjct: 79 LAAKNRAGLGE 89
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 706 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE----DTELMVSGLEPGWRYQFR 761
++W PP+ G +LGY +++ R A P+ ++ D V+GL G Y FR
Sbjct: 25 LQWHPPKELPGE-LLGYRLQYCRAD-----EARPNTIDFGKDDQHFTVTGLHKGTTYIFR 78
Query: 762 ITAENVVGFSE 772
+ A+N G E
Sbjct: 79 LAAKNRAGLGE 89
>pdb|2IG2|H Chain H, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 455
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG ++ +++ +Q T +S L + +D E KC +N+A
Sbjct: 280 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 339
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 340 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 391
Query: 584 HNGEP 588
NG+P
Sbjct: 392 SNGQP 396
>pdb|1MCO|H Chain H, Three-Dimensional Structure Of A Human Immunoglobulin With
A Hinge Deletion
Length = 428
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG ++ +++ +Q T +S L + +D E KC +N+A
Sbjct: 256 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 315
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 316 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 367
Query: 584 HNGEP 588
NG+P
Sbjct: 368 SNGQP 372
>pdb|1DN2|A Chain A, Fc Fragment Of Human Igg1 In Complex With An Engineered 13
Residue Peptide Dcawhlgelvwct-Nh2
pdb|1DN2|B Chain B, Fc Fragment Of Human Igg1 In Complex With An Engineered 13
Residue Peptide Dcawhlgelvwct-Nh2
Length = 207
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 35 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 94
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 95 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 146
Query: 584 HNGEP 588
NG+P
Sbjct: 147 SNGQP 151
>pdb|3DO3|A Chain A, Human 1gg1 Fc Fragment, 2.5 Angstrom Structure
pdb|3DO3|B Chain B, Human 1gg1 Fc Fragment, 2.5 Angstrom Structure
Length = 212
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 36 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 95
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 96 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 147
Query: 584 HNGEP 588
NG+P
Sbjct: 148 SNGQP 152
>pdb|4ACP|A Chain A, Deactivation Of Human Igg1 Fc By Endoglycosidase Treatment
pdb|4ACP|B Chain B, Deactivation Of Human Igg1 Fc By Endoglycosidase Treatment
Length = 240
Score = 33.9 bits (76), Expect = 0.57, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 56 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 115
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 116 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 167
Query: 584 HNGEP 588
NG+P
Sbjct: 168 SNGQP 172
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT---NRAGHSITKAR 539
K+ WYKD + ++ ++ + L++H AL D G +C T ++IT++
Sbjct: 156 KIQWYKDSL-LLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRS- 213
Query: 540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-MPPPTARWLHNGEPLTS 591
+E +R+ K+ E+ + + + + S+ + P +L G PLT+
Sbjct: 214 --IE----LRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTT 260
>pdb|3DNK|A Chain A, Enzyme Deglycosylated Human Igg1 Fc Fragment
pdb|3DNK|B Chain B, Enzyme Deglycosylated Human Igg1 Fc Fragment
Length = 212
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 36 PEVKFNWYVDGVEVHNAKTKPREEQYDSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 95
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 96 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 147
Query: 584 HNGEP 588
NG+P
Sbjct: 148 SNGQP 152
>pdb|2RCJ|C Chain C, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|D Chain D, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|G Chain G, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|H Chain H, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|K Chain K, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|L Chain L, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|O Chain O, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|P Chain P, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|S Chain S, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|T Chain T, Solution Structure Of Human Immunoglobulin M
Length = 523
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG ++ +++ +Q T +S L + +D E KC +N+A
Sbjct: 351 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA 410
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 411 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 462
Query: 584 HNGEP 588
NG+P
Sbjct: 463 SNGQP 467
>pdb|3SGJ|A Chain A, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGJ|B Chain B, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|A Chain A, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|B Chain B, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
Length = 225
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 49 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 108
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 109 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 160
Query: 584 HNGEP 588
NG+P
Sbjct: 161 SNGQP 165
>pdb|2DTS|A Chain A, Crystal Structure Of The Defucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|2DTS|B Chain B, Crystal Structure Of The Defucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AVE|A Chain A, Crystal Structure Of The Fucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AVE|B Chain B, Crystal Structure Of The Fucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AY4|A Chain A, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
pdb|3AY4|B Chain B, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
Length = 223
Score = 33.5 bits (75), Expect = 0.64, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 47 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 106
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 107 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 158
Query: 584 HNGEP 588
NG+P
Sbjct: 159 SNGQP 163
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 470 VEFTVQVEGIPTPKVSWYK-----------DGFEIFSSRRQRIV--TDNDISTLIIHQAA 516
VEF +V P + W K DG + V TD +I L I
Sbjct: 128 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 187
Query: 517 LMDEGEIKCTATNRAGHSITKARLRLEAPP 546
D GE C A N G S A L + P
Sbjct: 188 FEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSG---GRYEITHTDRYLNLRISDARRADRGEYQAH 622
+K + G P PT RWL NG+ G Y++ +++ +L + +D+G Y
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV--RNQHWSLIMESVVPSDKGNYTCV 86
Query: 623 GVNSLGEDVASFLVTVTDR 641
N G ++ + V +R
Sbjct: 87 VENEYGSINHTYHLDVVER 105
>pdb|3S7G|A Chain A, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|B Chain B, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|C Chain C, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|D Chain D, Aglycosylated Human Igg1 Fc Fragment
Length = 227
Score = 33.5 bits (75), Expect = 0.71, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 51 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 110
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 111 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 162
Query: 584 HNGEP 588
NG+P
Sbjct: 163 SNGQP 167
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 470 VEFTVQVEGIPTPKVSWYK-----------DGFEIFSSRRQRIV--TDNDISTLIIHQAA 516
VEF +V P + W K DG + V TD +I L I
Sbjct: 126 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 185
Query: 517 LMDEGEIKCTATNRAGHSITKARLRLEAPP 546
D GE C A N G S A L + P
Sbjct: 186 FEDAGEYTCLAGNSIGISFHSAWLTVLPAP 215
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSG---GRYEITHTDRYLNLRISDARRADRGEYQAH 622
+K + G P PT RWL NG+ G Y++ +++ +L + +D+G Y
Sbjct: 27 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV--RNQHWSLIMESVVPSDKGNYTCV 84
Query: 623 GVNSLGEDVASFLVTVTDR 641
N G ++ + V +R
Sbjct: 85 VENEYGSINHTYHLDVVER 103
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 470 VEFTVQVEGIPTPKVSWYK-----------DGFEIFSSRRQRIV--TDNDISTLIIHQAA 516
VEF +V P + W K DG + V TD +I L I
Sbjct: 128 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 187
Query: 517 LMDEGEIKCTATNRAGHSITKARLRLEAPP 546
D GE C A N G S A L + P
Sbjct: 188 FEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSG---GRYEITHTDRYLNLRISDARRADRGEYQAH 622
+K + G P PT RWL NG+ G Y++ +++ +L + +D+G Y
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV--RNQHWSLIMESVVPSDKGNYTCV 86
Query: 623 GVNSLGEDVASFLVTVTDR 641
N G ++ + V +R
Sbjct: 87 VENEYGSINHTYHLDVVER 105
>pdb|2IX7|C Chain C, Structure Of Apo-Calmodulin Bound To Unconventional
Myosin V
Length = 58
Score = 33.5 bits (75), Expect = 0.75, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 38 IRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQ 80
+R+ I IQK RG+LL R+ YL M+ +A+ +Q + R Q
Sbjct: 4 LRAACIRIQKTIRGWLL----RKRYLCMQRAAITVQRYVRGYQ 42
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 470 VEFTVQVEGIPTPKVSWYK-----------DGFEIFSSRRQRIV--TDNDISTLIIHQAA 516
VEF +V P + W K DG + V TD +I L I
Sbjct: 128 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 187
Query: 517 LMDEGEIKCTATNRAGHSITKARLRLEAPP 546
D GE C A N G S A L + P
Sbjct: 188 FEDAGEYTCLAGNSIGISFHSAWLTVLPAP 217
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSG---GRYEITHTDRYLNLRISDARRADRGEYQAH 622
+K + G P PT RWL NG+ G Y++ +++ +L + +D+G Y
Sbjct: 29 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV--RNQHWSLIMESVVPSDKGNYTCV 86
Query: 623 GVNSLGEDVASFLVTVTDR 641
N G ++ + V +R
Sbjct: 87 VENEYGSINHTYHLDVVER 105
>pdb|2J6E|A Chain A, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
pdb|2J6E|B Chain B, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
Length = 232
Score = 33.5 bits (75), Expect = 0.76, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 56 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 115
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 116 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 167
Query: 584 HNGEP 588
NG+P
Sbjct: 168 SNGQP 172
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 470 VEFTVQVEGIPTPKVSWYK-----------DGFEIFSSRRQRIV--TDNDISTLIIHQAA 516
VEF +V P + W K DG + V TD +I L I
Sbjct: 127 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 186
Query: 517 LMDEGEIKCTATNRAGHSITKARLRLEAPP 546
D GE C A N G S A L + P
Sbjct: 187 FEDAGEYTCLAGNSIGISFHSAWLTVLPAP 216
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSG---GRYEITHTDRYLNLRISDARRADRGEYQAH 622
+K + G P PT RWL NG+ G Y++ +++ +L + +D+G Y
Sbjct: 28 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV--RNQHWSLIMESVVPSDKGNYTCV 85
Query: 623 GVNSLGEDVASFLVTVTDR 641
N G ++ + V +R
Sbjct: 86 VENEYGSINHTYHLDVVER 104
>pdb|2CRM|A Chain A, Solution Structure Of The Forth Fniii Domain Of Human
Length = 120
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 635 LVTVTDRPLPPGKAKVVMTL-GKSVTLSWSEPEDDGGCKIGNYIVE 679
T D+P P K V + S ++W P+D+GG I Y+VE
Sbjct: 11 FTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVE 56
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 582 WLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630
W L + +YEIT+ D L + D + D G Y+ VN GED
Sbjct: 36 WYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGED 84
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 466 EDEKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIK 524
E V++ ++E + +V+WY ++ +S + I ++ ++ L + +D+G +
Sbjct: 15 EGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYR 74
Query: 525 CTATNRAGHSITKARL 540
C N G + A L
Sbjct: 75 CKVVNDYGEDSSYAEL 90
>pdb|3FJT|A Chain A, Crystal Structure Of A Human Fc Fragment Engineered For
Extended Serum Half-life
pdb|3FJT|B Chain B, Crystal Structure Of A Human Fc Fragment Engineered For
Extended Serum Half-life
Length = 209
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 36 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 95
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 96 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 147
Query: 584 HNGEP 588
NG+P
Sbjct: 148 SNGQP 152
>pdb|3C2S|A Chain A, Structural Characterization Of A Human Fc Fragment
Engineered For Lack Of Effector Functions
Length = 225
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 49 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 108
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 109 SIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 160
Query: 584 HNGEP 588
NG+P
Sbjct: 161 SNGQP 165
>pdb|1V5J|A Chain A, Solution Structure Of Rsgi Ruh-008, Fn3 Domain In Human
Cdna
Length = 108
Score = 33.1 bits (74), Expect = 0.89, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV-EDTELMVSGLEPGWRYQFRITA 425
+ W+PPE + GY++E R+ GS W P + +TEL+V GL Y+FR+ A
Sbjct: 25 LHWDPPELVPKR-LDGYVLEGRQ-GSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVA 82
Score = 33.1 bits (74), Expect = 0.89, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 706 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV-EDTELMVSGLEPGWRYQFRITA 764
+ W+PPE + GY++E R+ GS W P + +TEL+V GL Y+FR+ A
Sbjct: 25 LHWDPPELVPKR-LDGYVLEGRQ-GSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVA 82
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 33.1 bits (74), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 541 RLEAPPTIRLPKQYEDGL-LFEMGEIIKLKVSMAGMPPPTARWLHNG---EPLTSGGRYE 596
R+ P P++ E L + +K K +G P PT RWL NG +P G Y+
Sbjct: 8 RMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYK 67
Query: 597 ITHTDRYLNLRI--SDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
+ RY I +D+G Y N G ++ + V +R
Sbjct: 68 V----RYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVER 110
>pdb|3V8C|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc
Igg1 T125(Yb20) DOUBLE MUTANT (H310 AND H435 IN K)
pdb|3V8C|B Chain B, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc
Igg1 T125(Yb20) DOUBLE MUTANT (H310 AND H435 IN K)
Length = 212
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + + ++ E KC +N+A
Sbjct: 36 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLKQDWLNGKEYKCKVSNKALPA 95
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 96 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 147
Query: 584 HNGEP 588
NG+P
Sbjct: 148 SNGQP 152
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 541 RLEAPPTIRLPKQYEDGL-LFEMGEIIKLKVSMAGMPPPTARWLHNG---EPLTSGGRYE 596
R+ P P++ E L + +K K +G P PT RWL NG +P G Y+
Sbjct: 9 RMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYK 68
Query: 597 ITHTDRYLNLRI--SDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
+ RY I +D+G Y N G ++ + V +R
Sbjct: 69 V----RYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVER 111
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 541 RLEAPPTIRLPKQYEDGL-LFEMGEIIKLKVSMAGMPPPTARWLHNG---EPLTSGGRYE 596
R+ P P++ E L + +K K +G P PT RWL NG +P G Y+
Sbjct: 8 RMPVAPYWTSPEKMEKKLHAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYK 67
Query: 597 ITHTDRYLNLRI--SDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
+ RY I +D+G Y N G ++ + V +R
Sbjct: 68 V----RYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVER 110
>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 119
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 358 PSLDRDVFTI---------RWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTEL 408
PS RDV + W PP G+ + + V R G + +L
Sbjct: 18 PSAPRDVVPVLVSSRFVRLSWRPPAEAKGN-IQTFTVFFSREGDNRERALNTTQPGSLQL 76
Query: 409 MVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
V L+P Y FR+ A N G PG S+P+ V Q P + PS
Sbjct: 77 TVGNLKPEAMYTFRVVAYNEWG---PGESSQPIKVATQ--PESGPS 117
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 697 PSLDRDVFTI---------RWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTEL 747
PS RDV + W PP G+ + + V R G + +L
Sbjct: 18 PSAPRDVVPVLVSSRFVRLSWRPPAEAKGN-IQTFTVFFSREGDNRERALNTTQPGSLQL 76
Query: 748 MVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
V L+P Y FR+ A N G PG S+P+ V Q P + PS
Sbjct: 77 TVGNLKPEAMYTFRVVAYNEWG---PGESSQPIKVATQ--PESGPS 117
>pdb|4DZ8|B Chain B, Human Igg1 Fc Fragment Heterodimer
Length = 207
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 25/126 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 33 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 92
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA-----GMPPP--TARW 582
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 93 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCELVKGFYPSDIAVEW 144
Query: 583 LHNGEP 588
NG+P
Sbjct: 145 ESNGQP 150
>pdb|1L6X|A Chain A, Fc Fragment Of Rituximab Bound To A Minimized Version Of
The B-Domain From Protein A Called Z34c
pdb|2IWG|A Chain A, Complex Between The Pryspry Domain Of Trim21 And Igg Fc
pdb|2IWG|D Chain D, Complex Between The Pryspry Domain Of Trim21 And Igg Fc
Length = 207
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 35 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 94
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 95 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 146
Query: 584 HNGEP 588
NG+P
Sbjct: 147 SNGQP 151
>pdb|2QL1|A Chain A, Structural Characterization Of A Mutated, Adcc-Enhanced
Human Fc Fragment
Length = 225
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 49 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPL 108
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 109 PEEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 160
Query: 584 HNGEP 588
NG+P
Sbjct: 161 SNGQP 165
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
A P FI + T E + F +V P V+W+KD E+ S + + + L
Sbjct: 375 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL 434
Query: 511 IIHQAALMDEGEIKCTATNRAG 532
I++ D+GE A N G
Sbjct: 435 TINRVKGDDKGEYTVRAKNSYG 456
>pdb|3V7M|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc
Igg1 T125(Yb20) IN THE PRESENCE OF ZN2+
Length = 209
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 36 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 95
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 96 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 147
Query: 584 HNGEP 588
NG+P
Sbjct: 148 SNGQP 152
>pdb|4B7I|A Chain A, Crystal Structure Of Human Igg Fc Bearing Hybrid-Type
Glycans
pdb|4B7I|B Chain B, Crystal Structure Of Human Igg Fc Bearing Hybrid-Type
Glycans
Length = 218
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 35 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 94
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 95 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 146
Query: 584 HNGEP 588
NG+P
Sbjct: 147 SNGQP 151
>pdb|4DZ8|A Chain A, Human Igg1 Fc Fragment Heterodimer
Length = 211
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 25/126 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 36 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 95
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA-----GMPPP--TARW 582
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 96 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLEVKGFYPSDIAVEW 147
Query: 583 LHNGEP 588
NG+P
Sbjct: 148 ESNGQP 153
>pdb|2GJ7|A Chain A, Crystal Structure Of A Ge-GiFC COMPLEX
pdb|2GJ7|B Chain B, Crystal Structure Of A Ge-GiFC COMPLEX
Length = 227
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 51 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 110
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP E E+ K +VS+ G P W
Sbjct: 111 PIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQVSLTCLVKGFYPSDIAVEWE 162
Query: 584 HNGEP 588
NG+P
Sbjct: 163 SNGQP 167
>pdb|1OQO|A Chain A, Complex Between G0 Version Of An Fc Bound To A Minimized
Version Of Protein A Called Mini-Z
pdb|1OQO|B Chain B, Complex Between G0 Version Of An Fc Bound To A Minimized
Version Of Protein A Called Mini-Z
pdb|1OQX|A Chain A, G-2 Glycovariant Of Human Igg Fc Bound To Minimized
Version Of Protein A Called Z34c
pdb|1OQX|B Chain B, G-2 Glycovariant Of Human Igg Fc Bound To Minimized
Version Of Protein A Called Z34c
pdb|3V95|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc And
Igg1 T125(Yb20) IN THE PRESENCE OF EDTA
pdb|3V95|B Chain B, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc And
Igg1 T125(Yb20) IN THE PRESENCE OF EDTA
Length = 212
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 36 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 95
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 96 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 147
Query: 584 HNGEP 588
NG+P
Sbjct: 148 SNGQP 152
>pdb|3AGV|A Chain A, Crystal Structure Of A Human Igg-Aptamer Complex
pdb|3AGV|B Chain B, Crystal Structure Of A Human Igg-Aptamer Complex
Length = 211
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 35 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 94
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 95 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 146
Query: 584 HNGEP 588
NG+P
Sbjct: 147 SNGQP 151
>pdb|2WAH|A Chain A, Crystal Structure Of An Igg1 Fc Glycoform (man9glcnac2)
pdb|2WAH|B Chain B, Crystal Structure Of An Igg1 Fc Glycoform (man9glcnac2)
Length = 209
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 35 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 94
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 95 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 146
Query: 584 HNGEP 588
NG+P
Sbjct: 147 SNGQP 151
>pdb|3D6G|A Chain A, Fc Fragment Of Igg1 (herceptin) With Protein-a Mimetic
Peptide Dendrimer Ligand.
pdb|3D6G|B Chain B, Fc Fragment Of Igg1 (herceptin) With Protein-a Mimetic
Peptide Dendrimer Ligand
Length = 210
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 36 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 95
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 96 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 147
Query: 584 HNGEP 588
NG+P
Sbjct: 148 SNGQP 152
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 448 SPAAAPSFIRA--LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
S ++ P IR ++ T A++ V + G P P + W KDG + S++ RI
Sbjct: 3 SGSSGPPVIRQGPVNQTVAVDGTFV-LSCVATGSPVPTILWRKDGV-LVSTQDSRIKQLE 60
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
+ L I A L D G C A+ +G + A + ++
Sbjct: 61 N-GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
>pdb|2E7B|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Kiaa1556
Length = 103
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 548 IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLR 607
+R + +D + E G L+ ++ + P +W + L G +Y + L L
Sbjct: 9 VRFQEALKDLEVLE-GGAATLRCVLSSVAAPV-KWCYGNNVLRPGDKYSLRQEGAMLELV 66
Query: 608 ISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
+ + R D G Y S G+ S +TVT P P
Sbjct: 67 VRNLRPQDSGRYSC----SFGDQTTSATLTVTALPSGP 100
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSG---GRYEITHTDRYLNLRISDARRADRGEYQAH 622
+K + G P PT RWL NG+ G Y++ +++ +L + +D+G Y
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV--RNQHWSLIMESVVPSDKGNYTCV 94
Query: 623 GVNSLGEDVASFLVTVTDR 641
N G ++ + V +R
Sbjct: 95 VENEYGSINHTYHLDVVER 113
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRR----TGSPYWVRAS------PHMVEDTELMVSGLEPG 416
+RW PP+ GG + Y V + +G AS PH + T + VS LEP
Sbjct: 351 LRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPH 410
Query: 417 WRYQFRITAENVV 429
Y F + A N V
Sbjct: 411 MNYTFTVEARNGV 423
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 706 IRWEPPEYDGGSPVLGYLVEHRR----TGSPYWVRAS------PHMVEDTELMVSGLEPG 755
+RW PP+ GG + Y V + +G AS PH + T + VS LEP
Sbjct: 351 LRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPH 410
Query: 756 WRYQFRITAENVV 768
Y F + A N V
Sbjct: 411 MNYTFTVEARNGV 423
>pdb|1HZH|H Chain H, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
pdb|1HZH|K Chain K, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
Length = 457
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSR-----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA--- 531
P K +WY DG E+ +++ Q T +S L + ++ E KC +N+A
Sbjct: 281 PEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 340
Query: 532 --GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPP--TARWL 583
+I+KA+ + P LP + E+ K +VS+ G P W
Sbjct: 341 PIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQVSLTCLVKGFYPSDIAVEWE 392
Query: 584 HNGEP 588
NG+P
Sbjct: 393 SNGQP 397
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSG---GRYEITHTDRYLNLRISDARRADRGEYQAH 622
+K + G P PT RWL NG+ G Y++ +++ +L + +D+G Y
Sbjct: 37 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV--RNQHWSLIMESVVPSDKGNYTCV 94
Query: 623 GVNSLGEDVASFLVTVTDR 641
N G ++ + V +R
Sbjct: 95 VENEYGSINHTYHLDVVER 113
>pdb|2YZ8|A Chain A, Crystal Structure Of The 32th Ig-Like Domain Of Human
Obscurin (Kiaa1556)
Length = 103
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 548 IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLR 607
+R + +D + E G L+ ++ + P +W + L G +Y + L L
Sbjct: 9 VRFQEALKDLEVLE-GGAATLRCVLSSVAAPV-KWCYGNNVLRPGDKYSLRQEGAXLELV 66
Query: 608 ISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
+ + R D G Y S G+ S +TVT P P
Sbjct: 67 VRNLRPQDSGRYSC----SFGDQTTSATLTVTALPSGP 100
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
G L+ ++ + P W E L GGRY + L+I D AD GEY
Sbjct: 23 GATATLQCELSKVAP--VEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSC- 79
Query: 623 GVNSLGEDVASFLVTVTDRPLP 644
G++ S T+T R LP
Sbjct: 80 ---MCGQERTS--ATLTVRALP 96
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYK----DGFEIFSSRRQRIV---------TDNDI 507
+ TA+ VEF +V P + W K +G ++ + TD ++
Sbjct: 231 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKEL 290
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
L +H D GE C A N G S A L
Sbjct: 291 EVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323
>pdb|3MX0|A Chain A, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
pdb|3MX0|C Chain C, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
Length = 409
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRR----TGSPYWVRAS------PHMVEDTELMVSGLEPG 416
+RW PP+ GG + Y V + +G AS PH + T + VS LEP
Sbjct: 320 LRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPH 379
Query: 417 WRYQFRITAENVV 429
Y F + A N V
Sbjct: 380 MNYTFTVEARNGV 392
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 706 IRWEPPEYDGGSPVLGYLVEHRR----TGSPYWVRAS------PHMVEDTELMVSGLEPG 755
+RW PP+ GG + Y V + +G AS PH + T + VS LEP
Sbjct: 320 LRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPH 379
Query: 756 WRYQFRITAENVV 768
Y F + A N V
Sbjct: 380 MNYTFTVEARNGV 392
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRR----TGSPYWVRAS------PHMVEDTELMVSGLEPG 416
+RW PP+ GG + Y V + +G AS PH + T + VS LEP
Sbjct: 348 LRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPH 407
Query: 417 WRYQFRITAENVV 429
Y F + A N V
Sbjct: 408 MNYTFTVEARNGV 420
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 706 IRWEPPEYDGGSPVLGYLVEHRR----TGSPYWVRAS------PHMVEDTELMVSGLEPG 755
+RW PP+ GG + Y V + +G AS PH + T + VS LEP
Sbjct: 348 LRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPH 407
Query: 756 WRYQFRITAENVV 768
Y F + A N V
Sbjct: 408 MNYTFTVEARNGV 420
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 371 PPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTEL--MVSGLEPGWRYQFRITAENV 428
PP + GY + HR+T R +E L + +GLE G +Y F+++A V
Sbjct: 52 PPSGTQNGFITGYKIRHRKTTR----RGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTV 107
Query: 429 VGFSEP 434
G P
Sbjct: 108 NGTGPP 113
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 710 PPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTEL--MVSGLEPGWRYQFRITAENV 767
PP + GY + HR+T R +E L + +GLE G +Y F+++A V
Sbjct: 52 PPSGTQNGFITGYKIRHRKTTR----RGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTV 107
Query: 768 VGFSEP 773
G P
Sbjct: 108 NGTGPP 113
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRR----TGSPYWVRAS------PHMVEDTELMVSGLEPG 416
+RW PP+ GG + Y V + +G AS PH + T + VS LEP
Sbjct: 348 LRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPH 407
Query: 417 WRYQFRITAENVV 429
Y F + A N V
Sbjct: 408 XNYTFTVEARNGV 420
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 706 IRWEPPEYDGGSPVLGYLVEHRR----TGSPYWVRAS------PHMVEDTELMVSGLEPG 755
+RW PP+ GG + Y V + +G AS PH + T + VS LEP
Sbjct: 348 LRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPH 407
Query: 756 WRYQFRITAENVV 768
Y F + A N V
Sbjct: 408 XNYTFTVEARNGV 420
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 477 EGIPTPKVSWYKDGFEIFSSRRQR--------IVTDNDISTLIIHQAALMDEGEIKCTAT 528
+G P + SW+KDG + ++ ++ D LI D GE C A
Sbjct: 130 DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQ 189
Query: 529 NRAGHSITKARLRLEA 544
N G ++ ++A
Sbjct: 190 NGYGTAMRSEAAHMDA 205
Score = 29.6 bits (65), Expect = 10.0, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 22/148 (14%)
Query: 454 SFIRALHDTTALEDEKVEFTVQVEGIPTPKVSW-YKDG---------FEIFSSRRQRIVT 503
S A D E+E ++ T G +P+V W + G +I + R+
Sbjct: 3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62
Query: 504 DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE-----APPTIRLPKQYEDGL 558
+ S + D GE C + G + + + L + PTI +P G
Sbjct: 63 SS--SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG- 119
Query: 559 LFEMGEIIKLKVSMAGMPPPTARWLHNG 586
+ G PP W +G
Sbjct: 120 ----NRAVLTCSEHDGSPPSEYSWFKDG 143
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 477 EGIPTPKVSWYKDGFEIFSSRRQRIVTDND-------ISTLIIHQAALMDEGEIKCTATN 529
+G P + +W+KDG + ++ + N L+ + D GE C A N
Sbjct: 133 DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARN 192
Query: 530 RAGHSITKARLRLEA 544
G +T +R+EA
Sbjct: 193 GYGTPMTSNAVRMEA 207
>pdb|2E3V|A Chain A, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|B Chain B, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
pdb|2E3V|C Chain C, Crystal Structure Of The First Fibronectin Type Iii Domain
Of Neural Cell Adhesion Molecule Splicing Isoform From
Human Muscle Culture Lambda-4.4
Length = 122
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 367 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRA---SPHMVEDTELMVSGLEPGWRYQFRI 423
++++ PE GG P+L Y E R G W + + + + GL+P Y R+
Sbjct: 25 VQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASXEGIVTIVGLKPETTYAVRL 84
Query: 424 TAENVVGFSEPGPLSE 439
A N G E SE
Sbjct: 85 AALNGKGLGEISAASE 100
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 706 IRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRA---SPHMVEDTELMVSGLEPGWRYQFRI 762
++++ PE GG P+L Y E R G W + + + + GL+P Y R+
Sbjct: 25 VQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASXEGIVTIVGLKPETTYAVRL 84
Query: 763 TAENVVGFSEPGPLSE 778
A N G E SE
Sbjct: 85 AALNGKGLGEISAASE 100
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGR---YEITHTDRYLNLRISDARRADRGEYQAH 622
+K + G P PT RWL NG+ R Y++ +++ +L +D+G Y
Sbjct: 29 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKV--RNQHWSLIXESVVPSDKGNYTCV 86
Query: 623 GVNSLGEDVASFLVTVTDR 641
N G ++ + V +R
Sbjct: 87 VENEYGSINHTYHLDVVER 105
Score = 30.4 bits (67), Expect = 5.2, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 470 VEFTVQVEGIPTPKVSWYK-----------DGFEIFSSRRQRIV--TDNDISTLIIHQAA 516
VEF +V P + W K DG + V TD +I L I
Sbjct: 128 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 187
Query: 517 LMDEGEIKCTATNRAGHSITKARL 540
D GE C A N G S A L
Sbjct: 188 FEDAGEYTCLAGNSIGISFHSAWL 211
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 562 MGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEY 619
+G+ I LK ++ P +W NG P+ R ++ R L I++A D G+Y
Sbjct: 21 LGKEICLKCEISENIP--GKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDY 76
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGR---YEITHTDRYLNLRISDARRADRGEYQAH 622
+K + G P PT RWL NG+ R Y++ +++ +L +D+G Y
Sbjct: 36 VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKV--RNQHWSLIXESVVPSDKGNYTCV 93
Query: 623 GVNSLGEDVASFLVTVTDR 641
N G ++ + V +R
Sbjct: 94 VENEYGSINHTYHLDVVER 112
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 30.4 bits (67), Expect = 6.3, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRAD 615
+ L G++++L+ + + WL +G L R IT + + + D+ AD
Sbjct: 11 ESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESNRTRITGEE----VEVQDSVPAD 65
Query: 616 RGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKA 648
G Y + G D F V V+D LP G +
Sbjct: 66 SGLYACVTSSPSGSDTTYFSVNVSD-ALPSGPS 97
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 30.0 bits (66), Expect = 7.6, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 472 FTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR 530
FT G P + WY G +I S++R + + S L I+ A + D G +C AT+
Sbjct: 20 FTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 78
Query: 531 AGHS 534
G +
Sbjct: 79 KGQT 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,657,100
Number of Sequences: 62578
Number of extensions: 1244308
Number of successful extensions: 3802
Number of sequences better than 100.0: 195
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 3333
Number of HSP's gapped (non-prelim): 429
length of query: 1101
length of database: 14,973,337
effective HSP length: 109
effective length of query: 992
effective length of database: 8,152,335
effective search space: 8087116320
effective search space used: 8087116320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)