Query psy8139
Match_columns 1101
No_of_seqs 809 out of 5820
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 19:35:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 2.4E-55 5.3E-60 512.0 45.4 585 300-988 288-897 (1051)
2 KOG4221|consensus 100.0 3.7E-50 8E-55 463.0 45.9 638 296-995 86-802 (1381)
3 KOG4221|consensus 100.0 5.2E-46 1.1E-50 428.8 36.3 650 304-994 191-1008(1381)
4 KOG3513|consensus 100.0 2.3E-41 4.9E-46 395.4 45.5 589 304-994 94-804 (1051)
5 KOG4222|consensus 100.0 1.8E-37 3.8E-42 356.7 28.0 599 304-995 185-834 (1281)
6 KOG4222|consensus 100.0 3.9E-27 8.6E-32 271.9 23.1 554 316-986 102-718 (1281)
7 KOG4194|consensus 99.8 1.2E-19 2.6E-24 196.9 20.8 220 406-640 574-797 (873)
8 PHA02785 IL-beta-binding prote 99.7 6.8E-16 1.5E-20 170.8 27.3 208 406-629 82-317 (326)
9 KOG4194|consensus 99.7 2.5E-15 5.5E-20 163.7 20.6 213 450-665 501-731 (873)
10 PHA02785 IL-beta-binding prote 99.6 1.5E-13 3.3E-18 152.0 26.3 260 463-770 37-317 (326)
11 PHA02826 IL-1 receptor-like pr 99.5 3.7E-13 8.1E-18 139.1 19.5 159 460-629 30-213 (227)
12 cd05762 Ig8_MLCK Eighth immuno 99.4 2.5E-12 5.5E-17 114.9 13.2 96 453-548 1-96 (98)
13 cd05762 Ig8_MLCK Eighth immuno 99.4 1.1E-11 2.3E-16 110.8 12.9 90 556-645 8-97 (98)
14 cd05851 Ig3_Contactin-1 Third 99.3 2.8E-11 6.1E-16 106.0 10.6 88 452-543 1-88 (88)
15 cd05747 Ig5_Titin_like M5, fif 99.3 7.1E-11 1.5E-15 104.8 12.5 90 451-540 2-91 (92)
16 PHA02826 IL-1 receptor-like pr 99.2 2E-10 4.4E-15 118.9 17.2 111 405-532 97-212 (227)
17 PF07679 I-set: Immunoglobulin 99.2 2.1E-10 4.5E-15 101.7 13.8 90 453-542 1-90 (90)
18 cd05737 Ig_Myomesin_like_C C-t 99.2 2.8E-10 6E-15 100.9 12.4 85 458-542 7-92 (92)
19 cd05894 Ig_C5_MyBP-C C5 immuno 99.2 4.1E-10 9E-15 97.9 12.8 82 461-542 4-86 (86)
20 cd04972 Ig_TrkABC_d4 Fourth do 99.2 4.7E-10 1E-14 99.0 12.6 86 457-542 5-90 (90)
21 cd05852 Ig5_Contactin-1 Fifth 99.2 2.1E-10 4.6E-15 96.1 9.7 73 467-542 1-73 (73)
22 cd05745 Ig3_Peroxidasin Third 99.1 2.4E-10 5.3E-15 96.6 9.8 74 466-542 1-74 (74)
23 cd05892 Ig_Myotilin_C C-termin 99.1 3.2E-10 7E-15 95.3 10.1 73 470-542 1-75 (75)
24 cd04975 Ig4_SCFR_like Fourth i 99.1 4.6E-10 9.9E-15 100.4 11.5 84 460-543 11-100 (101)
25 cd05870 Ig5_NCAM-2 Fifth immun 99.1 6.6E-10 1.4E-14 99.8 12.4 90 452-542 2-98 (98)
26 KOG0196|consensus 99.1 5.6E-10 1.2E-14 126.9 14.4 145 636-783 326-536 (996)
27 KOG0196|consensus 99.1 1.6E-09 3.4E-14 123.4 17.6 189 685-906 330-537 (996)
28 cd04968 Ig3_Contactin_like Thi 99.1 7.3E-10 1.6E-14 97.4 11.8 87 452-542 1-87 (88)
29 cd05894 Ig_C5_MyBP-C C5 immuno 99.1 1.1E-09 2.5E-14 95.2 12.7 82 557-638 4-86 (86)
30 cd05728 Ig4_Contactin-2-like F 99.1 5.6E-10 1.2E-14 97.2 10.7 84 455-542 2-85 (85)
31 cd05735 Ig8_DSCAM Eight immuno 99.1 1.1E-09 2.3E-14 95.9 12.4 83 563-645 1-88 (88)
32 cd05869 Ig5_NCAM-1 Fifth immun 99.1 1.3E-09 2.9E-14 97.7 12.5 91 452-542 2-97 (97)
33 cd05730 Ig3_NCAM-1_like Third 99.1 1.1E-09 2.4E-14 97.9 11.4 83 460-544 11-94 (95)
34 cd05865 Ig1_NCAM-1 First immun 99.1 1.5E-09 3.2E-14 96.3 11.9 86 457-542 5-95 (96)
35 cd05748 Ig_Titin_like Immunogl 99.1 1.3E-09 2.9E-14 92.2 11.1 74 469-542 1-74 (74)
36 cd05893 Ig_Palladin_C C-termin 99.1 7.8E-10 1.7E-14 93.1 9.5 73 470-542 1-75 (75)
37 cd05866 Ig1_NCAM-2 First immun 99.1 2.2E-09 4.7E-14 94.2 12.6 86 456-542 4-91 (92)
38 cd05737 Ig_Myomesin_like_C C-t 99.1 1.8E-09 4E-14 95.6 12.1 83 556-638 9-92 (92)
39 cd05735 Ig8_DSCAM Eight immuno 99.1 1.9E-09 4E-14 94.4 11.8 81 467-547 1-86 (88)
40 cd05723 Ig4_Neogenin Fourth im 99.1 1.3E-09 2.9E-14 91.1 10.4 71 469-542 1-71 (71)
41 cd05732 Ig5_NCAM-1_like Fifth 99.1 1.6E-09 3.4E-14 97.3 11.6 90 452-542 2-96 (96)
42 cd05851 Ig3_Contactin-1 Third 99.1 1.1E-09 2.3E-14 96.0 10.1 78 557-638 10-87 (88)
43 cd05854 Ig6_Contactin-2 Sixth 99.0 1.9E-09 4.2E-14 93.5 11.3 79 468-546 1-85 (85)
44 cd05743 Ig_Perlecan_D2_like Im 99.0 1.8E-09 3.9E-14 92.3 10.5 75 467-541 1-75 (78)
45 cd05852 Ig5_Contactin-1 Fifth 99.0 1.2E-09 2.5E-14 91.6 9.1 73 563-638 1-73 (73)
46 cd05867 Ig4_L1-CAM_like Fourth 99.0 2.1E-09 4.5E-14 91.4 10.7 74 467-542 1-75 (76)
47 cd07693 Ig1_Robo First immunog 99.0 3.3E-09 7.2E-14 96.1 12.3 91 452-542 1-99 (100)
48 cd04975 Ig4_SCFR_like Fourth i 99.0 3.2E-09 7E-14 94.9 11.9 84 556-639 11-100 (101)
49 cd05891 Ig_M-protein_C C-termi 99.0 3.6E-09 7.7E-14 93.5 12.1 85 458-542 7-92 (92)
50 cd05859 Ig4_PDGFR-alpha Fourth 99.0 3.1E-09 6.8E-14 95.2 11.8 83 461-543 12-100 (101)
51 cd05747 Ig5_Titin_like M5, fif 99.0 3.6E-09 7.8E-14 93.8 12.0 89 545-636 3-91 (92)
52 cd05744 Ig_Myotilin_C_like Imm 99.0 2.7E-09 5.9E-14 90.2 10.7 73 470-542 1-75 (75)
53 cd05745 Ig3_Peroxidasin Third 99.0 1.6E-09 3.4E-14 91.7 8.9 74 562-638 1-74 (74)
54 cd05848 Ig1_Contactin-5 First 99.0 3.6E-09 7.9E-14 93.9 11.7 82 453-536 2-87 (94)
55 cd05892 Ig_Myotilin_C C-termin 99.0 2.3E-09 4.9E-14 90.1 9.8 73 566-638 1-75 (75)
56 cd05868 Ig4_NrCAM Fourth immun 99.0 2.2E-09 4.7E-14 91.1 9.7 74 467-542 1-75 (76)
57 cd04969 Ig5_Contactin_like Fif 99.0 2.4E-09 5.2E-14 90.3 9.8 73 467-542 1-73 (73)
58 cd05853 Ig6_Contactin-4 Sixth 99.0 2.6E-09 5.7E-14 91.5 9.7 79 468-546 1-85 (85)
59 cd05850 Ig1_Contactin-2 First 99.0 6.8E-09 1.5E-13 92.2 12.6 82 453-536 2-87 (94)
60 cd05748 Ig_Titin_like Immunogl 99.0 4.6E-09 9.9E-14 88.9 10.7 73 566-638 2-74 (74)
61 cd05773 Ig8_hNephrin_like Eigh 99.0 7.1E-09 1.5E-13 94.8 12.5 101 543-643 2-109 (109)
62 cd04972 Ig_TrkABC_d4 Fourth do 99.0 8.2E-09 1.8E-13 91.1 12.4 82 557-638 9-90 (90)
63 cd05857 Ig2_FGFR Second immuno 99.0 6.5E-09 1.4E-13 90.8 11.6 81 462-542 4-85 (85)
64 cd05863 Ig2_VEGFR-3 Second imm 99.0 3.2E-09 6.8E-14 86.6 8.7 65 470-542 1-65 (67)
65 PF00041 fn3: Fibronectin type 99.0 3.2E-09 6.9E-14 92.9 9.5 59 715-774 26-85 (85)
66 cd05849 Ig1_Contactin-1 First 99.0 8.1E-09 1.8E-13 91.2 11.9 80 453-536 2-86 (93)
67 cd05773 Ig8_hNephrin_like Eigh 99.0 9.5E-09 2.1E-13 93.9 12.6 95 452-546 4-108 (109)
68 cd04978 Ig4_L1-NrCAM_like Four 98.9 4.6E-09 1E-13 89.5 9.6 74 467-542 1-75 (76)
69 cd04970 Ig6_Contactin_like Six 98.9 6.4E-09 1.4E-13 90.7 10.6 79 468-546 1-85 (85)
70 cd05854 Ig6_Contactin-2 Sixth 98.9 8.9E-09 1.9E-13 89.3 11.4 78 565-642 2-85 (85)
71 cd05743 Ig_Perlecan_D2_like Im 98.9 7.7E-09 1.7E-13 88.4 10.6 75 563-637 1-75 (78)
72 cd05893 Ig_Palladin_C C-termin 98.9 4.9E-09 1.1E-13 88.3 9.2 73 566-638 1-75 (75)
73 cd05746 Ig4_Peroxidasin Fourth 98.9 3.8E-09 8.1E-14 87.9 8.3 68 470-540 1-68 (69)
74 cd05740 Ig_CEACAM_D4 Fourth im 98.9 1E-08 2.2E-13 90.2 11.2 80 459-542 10-90 (91)
75 cd05859 Ig4_PDGFR-alpha Fourth 98.9 1.3E-08 2.7E-13 91.3 11.2 83 557-639 12-100 (101)
76 cd05723 Ig4_Neogenin Fourth im 98.9 8.6E-09 1.9E-13 86.2 9.5 70 566-638 2-71 (71)
77 cd05730 Ig3_NCAM-1_like Third 98.9 1.7E-08 3.7E-13 90.2 11.9 81 557-639 12-93 (95)
78 cd05728 Ig4_Contactin-2-like F 98.9 1.1E-08 2.4E-13 89.1 10.1 78 557-638 8-85 (85)
79 cd05749 Ig2_Tyro3_like Second 98.9 1.1E-08 2.3E-13 87.3 9.7 73 456-536 2-75 (81)
80 cd05876 Ig3_L1-CAM Third immun 98.9 7E-09 1.5E-13 86.8 8.4 70 470-542 1-70 (71)
81 cd05853 Ig6_Contactin-4 Sixth 98.9 1E-08 2.3E-13 87.8 9.5 78 565-642 2-85 (85)
82 cd05760 Ig2_PTK7 Second immuno 98.9 1.1E-08 2.4E-13 87.1 9.7 71 470-542 1-72 (77)
83 PF07679 I-set: Immunoglobulin 98.9 2.1E-08 4.5E-13 88.8 11.8 83 556-638 8-90 (90)
84 cd05868 Ig4_NrCAM Fourth immun 98.9 1.1E-08 2.5E-13 86.7 9.7 74 563-638 1-75 (76)
85 cd05722 Ig1_Neogenin First imm 98.9 1.7E-08 3.7E-13 90.1 11.3 85 455-542 2-95 (95)
86 cd04977 Ig1_NCAM-1_like First 98.9 3E-08 6.5E-13 87.6 12.4 84 457-541 5-91 (92)
87 cd05739 Ig3_RPTP_IIa_LAR_like 98.9 1.7E-08 3.7E-13 83.5 10.1 68 467-540 1-68 (69)
88 cd05726 Ig4_Robo Fhird immunog 98.9 1.3E-08 2.7E-13 89.9 9.9 77 467-546 1-85 (90)
89 cd05744 Ig_Myotilin_C_like Imm 98.9 1.7E-08 3.7E-13 85.3 10.2 73 566-638 1-75 (75)
90 cd05891 Ig_M-protein_C C-termi 98.9 2.8E-08 6E-13 87.9 12.0 83 556-638 9-92 (92)
91 cd04973 Ig1_FGFR First immunog 98.9 1.4E-08 3E-13 87.0 9.7 79 459-542 1-79 (79)
92 cd05724 Ig2_Robo Second immuno 98.9 2.1E-08 4.5E-13 87.9 11.2 81 458-541 2-85 (86)
93 cd05867 Ig4_L1-CAM_like Fourth 98.9 1.9E-08 4.1E-13 85.5 10.5 72 563-638 1-75 (76)
94 cd04969 Ig5_Contactin_like Fif 98.9 1.4E-08 2.9E-13 85.7 9.3 73 563-638 1-73 (73)
95 cd05758 Ig5_KIRREL3-like Fifth 98.9 3E-08 6.6E-13 89.0 12.1 88 452-540 2-97 (98)
96 cd05864 Ig2_VEGFR-2 Second imm 98.9 1.1E-08 2.3E-13 84.6 8.4 68 470-542 1-68 (70)
97 cd05869 Ig5_NCAM-1 Fifth immun 98.8 3E-08 6.5E-13 88.9 11.8 80 559-638 13-97 (97)
98 cd05763 Ig_1 Subgroup of the i 98.8 1.4E-08 3.1E-13 86.1 9.0 71 470-542 1-74 (75)
99 cd05865 Ig1_NCAM-1 First immun 98.8 2.9E-08 6.2E-13 88.1 11.1 80 559-638 11-95 (96)
100 cd05863 Ig2_VEGFR-3 Second imm 98.8 1.6E-08 3.5E-13 82.4 8.7 64 567-638 2-65 (67)
101 cd04971 Ig_TrKABC_d5 Fifth dom 98.8 2.3E-08 4.9E-13 85.6 10.1 70 472-541 3-79 (81)
102 cd04978 Ig4_L1-NrCAM_like Four 98.8 2E-08 4.3E-13 85.6 9.8 75 563-638 1-75 (76)
103 cd04968 Ig3_Contactin_like Thi 98.8 3.2E-08 6.9E-13 87.0 11.4 78 557-638 10-87 (88)
104 cd05857 Ig2_FGFR Second immuno 98.8 2.7E-08 5.8E-13 86.9 10.8 80 559-638 5-85 (85)
105 cd05725 Ig3_Robo Third immunog 98.8 1.7E-08 3.8E-13 83.9 9.0 69 470-542 1-69 (69)
106 cd05746 Ig4_Peroxidasin Fourth 98.8 1.3E-08 2.7E-13 84.7 7.9 68 566-636 1-68 (69)
107 cd04976 Ig2_VEGFR Second immun 98.8 2E-08 4.4E-13 83.8 9.1 69 470-542 1-69 (71)
108 cd05858 Ig3_FGFR-2 Third immun 98.8 2.2E-08 4.9E-13 88.2 9.9 76 467-542 1-89 (90)
109 cd05870 Ig5_NCAM-2 Fifth immun 98.8 2.9E-08 6.3E-13 89.1 10.7 82 557-638 10-98 (98)
110 cd05764 Ig_2 Subgroup of the i 98.8 3.5E-08 7.7E-13 83.5 10.6 73 467-542 1-74 (74)
111 cd05855 Ig_TrkB_d5 Fifth domai 98.8 2.4E-08 5.1E-13 84.2 9.2 69 472-540 3-76 (79)
112 cd04970 Ig6_Contactin_like Six 98.8 2.9E-08 6.3E-13 86.5 10.3 78 565-642 2-85 (85)
113 cd05738 Ig2_RPTP_IIa_LAR_like 98.8 2.1E-08 4.5E-13 84.7 9.0 70 470-542 1-73 (74)
114 cd05856 Ig2_FGFRL1-like Second 98.8 2.1E-08 4.5E-13 87.0 8.9 78 463-542 5-82 (82)
115 cd05866 Ig1_NCAM-2 First immun 98.8 5.8E-08 1.3E-12 85.2 11.5 79 558-637 10-90 (92)
116 cd04971 Ig_TrKABC_d5 Fifth dom 98.8 4.7E-08 1E-12 83.7 10.6 71 568-638 3-80 (81)
117 cd05736 Ig2_Follistatin_like S 98.8 2.9E-08 6.3E-13 84.5 9.2 74 470-543 1-74 (76)
118 cd05732 Ig5_NCAM-1_like Fifth 98.8 5.3E-08 1.2E-12 87.3 11.4 82 557-638 10-96 (96)
119 cd05864 Ig2_VEGFR-2 Second imm 98.8 2.8E-08 6E-13 82.2 8.7 67 567-638 2-68 (70)
120 cd04976 Ig2_VEGFR Second immun 98.8 2.8E-08 6.2E-13 82.9 8.9 68 567-638 2-69 (71)
121 cd04974 Ig3_FGFR Third immunog 98.8 3.1E-08 6.7E-13 87.2 9.3 76 467-542 1-89 (90)
122 cd05739 Ig3_RPTP_IIa_LAR_like 98.8 4.3E-08 9.4E-13 81.1 9.4 68 563-636 1-68 (69)
123 cd05855 Ig_TrkB_d5 Fifth domai 98.8 5.4E-08 1.2E-12 82.0 9.8 70 568-637 3-77 (79)
124 cd05726 Ig4_Robo Fhird immunog 98.8 4.6E-08 1E-12 86.3 9.7 77 563-642 1-85 (90)
125 cd05876 Ig3_L1-CAM Third immun 98.8 3.6E-08 7.8E-13 82.4 8.6 69 567-638 2-70 (71)
126 cd05731 Ig3_L1-CAM_like Third 98.7 3.7E-08 8E-13 82.6 8.4 70 470-542 1-70 (71)
127 cd04967 Ig1_Contactin First Ig 98.7 8.3E-08 1.8E-12 84.9 10.8 82 453-536 2-87 (91)
128 cd05760 Ig2_PTK7 Second immuno 98.7 6.8E-08 1.5E-12 82.2 9.5 71 566-638 1-74 (77)
129 cd05756 Ig1_IL1R_like First im 98.7 3.5E-08 7.6E-13 87.2 7.9 81 460-542 7-94 (94)
130 cd04973 Ig1_FGFR First immunog 98.7 7.5E-08 1.6E-12 82.4 9.6 76 557-637 3-78 (79)
131 cd05736 Ig2_Follistatin_like S 98.7 9.2E-08 2E-12 81.4 10.0 73 567-639 2-74 (76)
132 cd05733 Ig6_L1-CAM_like Sixth 98.7 4.4E-08 9.5E-13 83.4 7.8 67 470-536 1-71 (77)
133 cd05750 Ig_Pro_neuregulin Immu 98.7 7.6E-08 1.6E-12 81.8 8.9 69 470-538 1-73 (75)
134 cd05874 Ig6_NrCAM Sixth immuno 98.7 6.4E-08 1.4E-12 82.2 8.3 66 470-537 1-72 (77)
135 cd05858 Ig3_FGFR-2 Third immun 98.7 1.1E-07 2.4E-12 83.8 10.2 76 563-638 1-89 (90)
136 cd05765 Ig_3 Subgroup of the i 98.7 7.8E-08 1.7E-12 83.1 9.0 76 467-542 1-81 (81)
137 cd05763 Ig_1 Subgroup of the i 98.7 6.9E-08 1.5E-12 81.9 8.4 70 567-638 2-74 (75)
138 cd05725 Ig3_Robo Third immunog 98.7 7.8E-08 1.7E-12 80.0 8.2 69 566-638 1-69 (69)
139 cd05740 Ig_CEACAM_D4 Fourth im 98.7 1.4E-07 3E-12 83.0 10.0 78 557-638 12-90 (91)
140 cd05771 IgC_Tapasin_R Tapasin- 98.7 3.4E-07 7.4E-12 88.3 13.7 116 509-627 2-131 (139)
141 cd05848 Ig1_Contactin-5 First 98.7 1.2E-07 2.7E-12 84.1 9.7 69 562-632 18-87 (94)
142 cd05738 Ig2_RPTP_IIa_LAR_like 98.7 1.2E-07 2.7E-12 79.9 9.1 69 567-638 2-73 (74)
143 cd05752 Ig1_FcgammaR_like Frst 98.7 1.1E-07 2.3E-12 80.7 8.5 67 453-530 1-68 (78)
144 cd07702 Ig2_VEGFR-1 Second imm 98.6 1.4E-07 3.1E-12 78.1 8.8 65 470-537 1-65 (72)
145 cd05873 Ig_Sema4D_like Immunog 98.6 2.6E-07 5.7E-12 79.5 10.6 70 458-531 2-71 (87)
146 cd05856 Ig2_FGFRL1-like Second 98.6 1.6E-07 3.5E-12 81.3 9.5 77 559-637 5-81 (82)
147 cd05764 Ig_2 Subgroup of the i 98.6 1.7E-07 3.6E-12 79.3 9.1 73 563-638 1-74 (74)
148 cd07693 Ig1_Robo First immunog 98.6 2.8E-07 6.1E-12 83.4 11.2 82 557-638 10-99 (100)
149 cd05875 Ig6_hNeurofascin_like 98.6 1.6E-07 3.6E-12 79.6 8.9 66 470-537 1-72 (77)
150 cd05758 Ig5_KIRREL3-like Fifth 98.6 4.8E-07 1E-11 81.2 12.3 80 557-636 10-97 (98)
151 cd04974 Ig3_FGFR Third immunog 98.6 1.9E-07 4.1E-12 82.2 9.4 76 563-638 1-89 (90)
152 cd05731 Ig3_L1-CAM_like Third 98.6 1.6E-07 3.4E-12 78.8 8.4 70 566-638 1-70 (71)
153 cd07701 Ig1_Necl-3 First (N-te 98.6 3.6E-07 7.9E-12 81.0 10.7 83 459-542 4-95 (95)
154 cd05742 Ig1_VEGFR_like First i 98.6 1.8E-07 3.9E-12 81.3 8.3 76 467-542 1-83 (84)
155 cd05750 Ig_Pro_neuregulin Immu 98.6 2.1E-07 4.6E-12 79.0 8.6 68 567-634 2-73 (75)
156 cd05724 Ig2_Robo Second immuno 98.6 3.6E-07 7.8E-12 80.0 10.2 73 557-632 5-79 (86)
157 cd05733 Ig6_L1-CAM_like Sixth 98.6 1.6E-07 3.4E-12 80.0 7.6 67 566-632 1-71 (77)
158 KOG0613|consensus 98.6 1.1E-06 2.3E-11 106.8 17.3 310 304-639 100-428 (1205)
159 cd05850 Ig1_Contactin-2 First 98.6 3.6E-07 7.8E-12 81.1 10.1 66 563-632 19-87 (94)
160 cd05882 Ig1_Necl-1 First (N-te 98.6 7.6E-07 1.7E-11 78.7 12.0 81 460-541 5-94 (95)
161 cd05734 Ig7_DSCAM Seventh immu 98.6 2.4E-07 5.2E-12 79.4 8.6 69 470-541 1-78 (79)
162 cd05898 Ig5_KIRREL3 Fifth immu 98.6 7.9E-07 1.7E-11 78.4 11.9 88 452-540 2-97 (98)
163 cd05874 Ig6_NrCAM Sixth immuno 98.6 2.7E-07 5.9E-12 78.3 8.6 67 566-632 1-71 (77)
164 KOG0520|consensus 98.6 2.5E-07 5.5E-12 109.7 10.8 148 12-177 756-930 (975)
165 cd04977 Ig1_NCAM-1_like First 98.6 7.2E-07 1.6E-11 78.8 11.2 79 558-637 10-91 (92)
166 cd05729 Ig2_FGFR_like Second i 98.5 1.1E-06 2.3E-11 76.7 12.2 81 462-542 4-85 (85)
167 KOG2128|consensus 98.5 2.5E-05 5.5E-10 95.5 27.3 133 139-303 512-648 (1401)
168 cd05895 Ig_Pro_neuregulin-1 Im 98.5 4.3E-07 9.4E-12 77.2 9.2 70 470-539 1-75 (76)
169 cd05765 Ig_3 Subgroup of the i 98.5 3E-07 6.6E-12 79.4 8.2 76 563-638 1-81 (81)
170 cd05754 Ig3_Perlecan_like Thir 98.5 4E-07 8.7E-12 79.3 8.7 78 457-540 6-84 (85)
171 cd05771 IgC_Tapasin_R Tapasin- 98.5 1.9E-06 4.1E-11 83.1 14.2 116 407-531 2-131 (139)
172 cd05756 Ig1_IL1R_like First im 98.5 2.9E-07 6.3E-12 81.3 7.7 80 557-638 8-94 (94)
173 cd05749 Ig2_Tyro3_like Second 98.5 5.6E-07 1.2E-11 76.8 9.2 68 557-632 7-75 (81)
174 cd05849 Ig1_Contactin-1 First 98.5 5.2E-07 1.1E-11 79.7 9.0 66 563-632 19-86 (93)
175 COG5022 Myosin heavy chain [Cy 98.5 3E-05 6.5E-10 95.5 26.5 137 37-203 743-880 (1463)
176 cd05722 Ig1_Neogenin First imm 98.5 7E-07 1.5E-11 79.7 9.7 77 558-637 9-94 (95)
177 cd05861 Ig1_PDGFR-alphabeta Fr 98.5 7.5E-07 1.6E-11 77.1 9.5 76 467-542 1-82 (84)
178 cd05875 Ig6_hNeurofascin_like 98.5 7.1E-07 1.5E-11 75.8 9.1 64 567-632 2-71 (77)
179 cd07702 Ig2_VEGFR-1 Second imm 98.5 6.6E-07 1.4E-11 74.1 8.5 63 567-633 2-65 (72)
180 cd05742 Ig1_VEGFR_like First i 98.5 7.6E-07 1.7E-11 77.3 9.3 76 563-638 1-83 (84)
181 KOG0520|consensus 98.5 3.2E-07 7E-12 108.8 8.5 123 105-237 808-936 (975)
182 KOG0160|consensus 98.4 3.3E-06 7.2E-11 100.6 16.0 88 37-151 671-758 (862)
183 KOG0160|consensus 98.4 1.5E-06 3.3E-11 103.4 13.0 95 125-232 664-758 (862)
184 cd05734 Ig7_DSCAM Seventh immu 98.4 1.1E-06 2.3E-11 75.4 8.5 69 566-637 1-78 (79)
185 cd04979 Ig_Semaphorin_C Immuno 98.4 1.4E-06 3E-11 76.6 9.5 82 459-543 3-87 (89)
186 cd05895 Ig_Pro_neuregulin-1 Im 98.4 1.4E-06 3E-11 74.0 9.0 69 567-635 2-75 (76)
187 cd05861 Ig1_PDGFR-alphabeta Fr 98.4 3E-06 6.5E-11 73.4 10.5 77 563-639 1-83 (84)
188 KOG0613|consensus 98.4 1.6E-06 3.5E-11 105.4 11.4 396 366-779 9-427 (1205)
189 KOG3515|consensus 98.4 3.5E-05 7.6E-10 90.6 21.8 350 405-816 360-721 (741)
190 PF00041 fn3: Fibronectin type 98.4 7.5E-07 1.6E-11 77.7 6.3 74 359-434 10-84 (85)
191 cd04967 Ig1_Contactin First Ig 98.4 2E-06 4.4E-11 76.0 9.0 65 563-631 19-86 (91)
192 KOG3515|consensus 98.3 7.8E-06 1.7E-10 96.0 15.8 260 408-680 460-728 (741)
193 cd05898 Ig5_KIRREL3 Fifth immu 98.3 7.8E-06 1.7E-10 72.1 11.9 80 557-636 10-97 (98)
194 cd05757 Ig2_IL1R_like Second i 98.3 2.7E-06 5.9E-11 74.6 8.9 75 462-540 5-84 (92)
195 cd05729 Ig2_FGFR_like Second i 98.3 5.5E-06 1.2E-10 72.2 10.8 79 559-637 5-84 (85)
196 cd05753 Ig2_FcgammaR_like Seco 98.3 2.9E-06 6.3E-11 73.1 8.5 66 462-535 9-75 (83)
197 smart00410 IG_like Immunoglobu 98.3 1.4E-05 3E-10 69.4 12.8 83 460-542 2-85 (86)
198 smart00409 IG Immunoglobulin. 98.3 1.4E-05 3E-10 69.4 12.8 83 460-542 2-85 (86)
199 cd05754 Ig3_Perlecan_like Thir 98.3 3.9E-06 8.4E-11 73.1 8.3 74 557-636 10-84 (85)
200 cd07701 Ig1_Necl-3 First (N-te 98.2 8.3E-06 1.8E-10 72.4 10.4 82 556-638 5-95 (95)
201 cd05873 Ig_Sema4D_like Immunog 98.2 6.7E-06 1.4E-10 70.8 9.4 66 557-627 5-71 (87)
202 cd05717 Ig1_Necl-1-3_like Firs 98.2 1E-05 2.2E-10 72.2 10.9 83 459-542 4-95 (95)
203 cd05727 Ig2_Contactin-2-like S 98.2 2.6E-06 5.7E-11 74.4 6.5 72 461-534 12-86 (96)
204 cd05752 Ig1_FcgammaR_like Frst 98.2 3.4E-06 7.4E-11 71.5 6.8 58 558-626 10-68 (78)
205 PF13895 Ig_2: Immunoglobulin 98.2 1.3E-05 2.9E-10 68.7 10.7 70 462-541 9-79 (80)
206 cd05882 Ig1_Necl-1 First (N-te 98.2 1.6E-05 3.5E-10 70.2 11.2 80 557-637 6-94 (95)
207 smart00408 IGc2 Immunoglobulin 98.2 8.7E-06 1.9E-10 65.9 8.8 63 466-532 1-63 (63)
208 COG5022 Myosin heavy chain [Cy 98.2 0.0001 2.2E-09 91.0 21.2 145 3-179 736-883 (1463)
209 cd05757 Ig2_IL1R_like Second i 98.2 7E-06 1.5E-10 72.1 8.5 75 559-637 6-85 (92)
210 cd07690 Ig1_CD4 First immunogl 98.2 7.8E-06 1.7E-10 71.7 8.5 72 462-533 2-90 (94)
211 cd05845 Ig2_L1-CAM_like Second 98.2 5.1E-06 1.1E-10 72.5 7.2 72 459-533 10-84 (95)
212 cd00063 FN3 Fibronectin type 3 98.2 2.3E-05 5E-10 69.0 11.7 74 701-775 14-87 (93)
213 cd04979 Ig_Semaphorin_C Immuno 98.2 8.4E-06 1.8E-10 71.7 8.6 80 557-639 5-87 (89)
214 KOG4258|consensus 98.1 5.4E-05 1.2E-09 87.7 15.7 81 700-782 841-923 (1025)
215 cd05871 Ig_Semaphorin_classIII 98.1 1.1E-05 2.5E-10 70.7 8.2 77 462-543 6-89 (91)
216 cd05860 Ig4_SCFR Fourth immuno 98.1 3E-05 6.5E-10 67.8 10.6 83 461-543 12-100 (101)
217 cd05862 Ig1_VEGFR First immuno 98.1 1.2E-05 2.5E-10 69.9 8.2 77 467-543 1-85 (86)
218 KOG4258|consensus 98.1 1.3E-05 2.7E-10 92.7 10.2 124 699-823 499-647 (1025)
219 cd05727 Ig2_Contactin-2-like S 98.1 1.3E-05 2.8E-10 70.1 7.3 72 557-630 12-86 (96)
220 cd05881 Ig1_Necl-2 First (N-te 98.1 6.1E-05 1.3E-09 66.1 11.6 71 460-530 5-84 (95)
221 PHA03376 BARF1; Provisional 98.0 0.00016 3.5E-09 69.0 14.8 123 462-587 21-163 (221)
222 PF00047 ig: Immunoglobulin do 98.0 1.3E-05 2.9E-10 65.3 6.7 61 467-527 1-64 (64)
223 smart00408 IGc2 Immunoglobulin 98.0 2.6E-05 5.7E-10 63.0 7.6 62 563-628 2-63 (63)
224 smart00409 IG Immunoglobulin. 98.0 0.00012 2.7E-09 63.3 12.4 81 558-638 4-85 (86)
225 smart00410 IG_like Immunoglobu 98.0 0.00012 2.7E-09 63.3 12.4 81 558-638 4-85 (86)
226 cd05872 Ig_Sema4B_like Immunog 97.9 6.1E-05 1.3E-09 64.4 8.7 71 460-536 4-74 (85)
227 cd05862 Ig1_VEGFR First immuno 97.9 5.5E-05 1.2E-09 65.7 8.6 77 563-639 1-85 (86)
228 cd05860 Ig4_SCFR Fourth immuno 97.9 0.0002 4.3E-09 62.8 11.4 84 556-639 11-100 (101)
229 cd05753 Ig2_FcgammaR_like Seco 97.9 4.7E-05 1E-09 65.6 7.5 64 559-630 10-74 (83)
230 cd05871 Ig_Semaphorin_classIII 97.9 0.00011 2.3E-09 64.6 9.6 77 558-639 6-89 (91)
231 KOG2128|consensus 97.8 0.0015 3.2E-08 80.6 22.2 158 69-237 480-644 (1401)
232 cd05717 Ig1_Necl-1-3_like Firs 97.8 0.00015 3.2E-09 64.6 10.6 81 556-637 5-94 (95)
233 cd07690 Ig1_CD4 First immunogl 97.8 5E-05 1.1E-09 66.6 7.3 71 559-629 3-90 (94)
234 PF13927 Ig_3: Immunoglobulin 97.8 4.4E-05 9.5E-10 64.5 6.5 73 453-529 2-75 (75)
235 cd05845 Ig2_L1-CAM_like Second 97.8 5.9E-05 1.3E-09 65.9 6.5 71 556-629 11-84 (95)
236 PF13895 Ig_2: Immunoglobulin 97.8 9.4E-05 2E-09 63.4 7.9 69 559-637 10-79 (80)
237 cd05897 Ig2_IL1R2_like Second 97.8 0.00013 2.8E-09 63.9 8.7 72 463-535 6-82 (95)
238 cd05896 Ig1_IL1RAPL-1_like Fir 97.7 0.00022 4.8E-09 62.6 9.4 80 461-542 9-104 (104)
239 PF00047 ig: Immunoglobulin do 97.7 0.00013 2.7E-09 59.5 7.5 61 563-623 1-64 (64)
240 KOG4802|consensus 97.7 0.00014 3E-09 77.2 9.2 156 728-911 193-359 (516)
241 cd05759 Ig2_KIRREL3-like Secon 97.7 0.00024 5.1E-09 61.3 9.3 66 470-535 2-73 (82)
242 cd05751 Ig1_LILRB1_like First 97.7 9.6E-05 2.1E-09 65.1 6.7 73 453-530 3-75 (91)
243 cd04983 IgV_TCR_alpha_like Imm 97.7 0.0002 4.4E-09 65.7 9.0 74 458-531 4-93 (109)
244 cd05897 Ig2_IL1R2_like Second 97.6 0.00022 4.7E-09 62.6 8.1 73 559-632 6-83 (95)
245 cd05885 Ig2_Necl-4 Second immu 97.6 0.00025 5.4E-09 59.7 7.7 64 470-534 2-69 (80)
246 PF00612 IQ: IQ calmodulin-bin 97.6 7.8E-05 1.7E-09 44.9 3.3 21 277-297 1-21 (21)
247 cd05899 IgV_TCR_beta Immunoglo 97.6 0.00026 5.6E-09 65.1 8.4 74 457-531 3-95 (110)
248 cd04980 IgV_L_kappa Immunoglob 97.6 0.00044 9.5E-09 63.0 9.8 75 456-530 4-93 (106)
249 cd05900 Ig_Aggrecan Immunoglob 97.5 0.00056 1.2E-08 62.3 9.5 78 466-543 1-109 (112)
250 KOG0164|consensus 97.5 0.00073 1.6E-08 76.8 12.0 54 40-123 697-750 (1001)
251 cd05714 Ig_CSPGs_LP Immunoglob 97.5 0.00074 1.6E-08 61.5 10.2 78 466-543 1-103 (106)
252 cd05759 Ig2_KIRREL3-like Secon 97.5 0.0007 1.5E-08 58.3 9.4 67 566-632 2-74 (82)
253 cd05879 Ig_P0 Immunoglobulin ( 97.5 0.0012 2.5E-08 60.8 11.1 76 458-533 4-105 (116)
254 PF00612 IQ: IQ calmodulin-bin 97.4 0.00019 4.1E-09 43.2 3.6 18 13-30 2-19 (21)
255 cd05881 Ig1_Necl-2 First (N-te 97.4 0.00099 2.2E-08 58.5 9.5 70 556-625 5-83 (95)
256 cd04982 IgV_TCR_gamma Immunogl 97.4 0.00074 1.6E-08 62.7 9.0 72 458-529 4-98 (116)
257 cd05885 Ig2_Necl-4 Second immu 97.4 0.00082 1.8E-08 56.6 8.2 66 566-631 2-70 (80)
258 cd05713 Ig_MOG_like Immunoglob 97.4 0.0012 2.6E-08 59.4 9.8 76 467-542 1-99 (100)
259 cd05872 Ig_Sema4B_like Immunog 97.4 0.00077 1.7E-08 57.7 7.9 72 557-634 5-76 (85)
260 cd00099 IgV Immunoglobulin var 97.4 0.0006 1.3E-08 62.0 7.9 70 463-532 2-91 (105)
261 cd05877 Ig_LP_like Immunoglobu 97.4 0.0011 2.3E-08 60.5 9.3 78 466-543 1-103 (106)
262 cd05774 Ig_CEACAM_D1 First imm 97.4 0.001 2.2E-08 59.8 8.9 68 462-532 8-94 (105)
263 smart00060 FN3 Fibronectin typ 97.3 0.00084 1.8E-08 57.1 8.0 68 699-770 12-82 (83)
264 cd05880 Ig_EVA1 Immunoglobulin 97.3 0.0017 3.7E-08 59.9 10.0 76 458-533 4-104 (115)
265 cd05878 Ig_Aggrecan_like Immun 97.2 0.0021 4.6E-08 58.7 9.5 77 467-543 2-107 (110)
266 cd00063 FN3 Fibronectin type 3 97.2 0.0025 5.4E-08 55.7 9.8 76 359-435 11-86 (93)
267 cd05718 Ig1_PVR_like First imm 97.2 0.0022 4.9E-08 57.4 9.5 75 468-542 1-97 (98)
268 cd04984 IgV_L_lambda Immunoglo 97.2 0.002 4.2E-08 57.7 9.0 68 463-530 2-85 (98)
269 cd05751 Ig1_LILRB1_like First 97.2 0.0011 2.5E-08 58.2 7.3 64 559-626 12-75 (91)
270 cd05775 Ig_SLAM-CD84_like_N N- 97.2 0.0017 3.7E-08 57.8 8.4 78 465-542 2-96 (97)
271 cd05711 Ig_FcalphaRI Immunoglo 97.2 0.0011 2.5E-08 58.5 7.2 68 461-529 9-76 (94)
272 cd05896 Ig1_IL1RAPL-1_like Fir 97.2 0.0019 4.1E-08 56.9 8.3 80 558-637 10-103 (104)
273 cd05741 Ig_CEACAM_D1_like Firs 97.1 0.0021 4.6E-08 56.7 7.9 65 467-534 1-83 (92)
274 PF13927 Ig_3: Immunoglobulin 97.0 0.0012 2.6E-08 55.5 5.8 60 563-625 15-75 (75)
275 cd05715 Ig_P0-like Immunoglobu 97.0 0.0039 8.5E-08 57.8 9.7 76 458-533 4-105 (116)
276 PF07686 V-set: Immunoglobulin 97.0 0.0066 1.4E-07 55.9 11.2 73 458-530 7-101 (114)
277 KOG0165|consensus 97.0 0.1 2.3E-06 60.5 21.9 220 4-237 419-671 (1023)
278 KOG4367|consensus 97.0 0.00077 1.7E-08 71.7 5.0 75 698-775 449-523 (699)
279 cd05900 Ig_Aggrecan Immunoglob 97.0 0.0047 1E-07 56.3 9.5 78 563-640 2-110 (112)
280 cd04983 IgV_TCR_alpha_like Imm 97.0 0.0038 8.1E-08 57.2 9.0 72 557-628 7-94 (109)
281 KOG0164|consensus 97.0 0.013 2.7E-07 67.2 14.1 60 133-208 695-754 (1001)
282 smart00015 IQ Short calmodulin 96.9 0.00098 2.1E-08 42.7 3.0 22 276-297 2-23 (26)
283 cd05877 Ig_LP_like Immunoglobu 96.9 0.0064 1.4E-07 55.3 9.6 78 563-640 2-104 (106)
284 cd05888 Ig1_Nectin-4_like Frst 96.9 0.007 1.5E-07 54.3 9.7 74 469-542 2-99 (100)
285 KOG4152|consensus 96.9 0.18 3.9E-06 55.9 21.6 75 605-680 648-726 (830)
286 cd05714 Ig_CSPGs_LP Immunoglob 96.9 0.0074 1.6E-07 54.9 9.7 78 563-640 2-104 (106)
287 cd05899 IgV_TCR_beta Immunoglo 96.9 0.0048 1E-07 56.6 8.4 70 557-627 7-95 (110)
288 cd00099 IgV Immunoglobulin var 96.9 0.0045 9.7E-08 56.2 8.2 70 559-628 2-91 (105)
289 cd05902 Ig_Neurocan Immunoglob 96.8 0.0091 2E-07 54.2 9.6 77 467-543 2-107 (110)
290 cd05713 Ig_MOG_like Immunoglob 96.8 0.0079 1.7E-07 54.0 9.4 37 602-638 63-99 (100)
291 cd07694 Ig2_CD4 Second immunog 96.8 0.0091 2E-07 50.4 8.6 75 462-542 9-85 (88)
292 cd05901 Ig_Versican Immunoglob 96.8 0.016 3.4E-07 52.8 10.8 38 506-543 77-114 (117)
293 cd07706 IgV_TCR_delta Immunogl 96.7 0.0071 1.5E-07 56.1 8.7 74 457-530 4-94 (116)
294 PHA02987 Ig domain OX-2-like p 96.7 0.015 3.2E-07 56.7 10.3 86 461-546 24-125 (189)
295 cd05879 Ig_P0 Immunoglobulin ( 96.7 0.015 3.2E-07 53.5 9.8 74 557-630 7-106 (116)
296 cd04980 IgV_L_kappa Immunoglob 96.6 0.0077 1.7E-07 54.8 8.0 70 557-626 9-93 (106)
297 cd05711 Ig_FcalphaRI Immunoglo 96.6 0.007 1.5E-07 53.5 7.3 65 559-624 11-75 (94)
298 cd05886 Ig1_Nectin-1_like Firs 96.6 0.018 3.9E-07 51.2 9.8 37 506-542 61-98 (99)
299 cd05878 Ig_Aggrecan_like Immun 96.6 0.014 3E-07 53.4 9.4 78 563-640 2-108 (110)
300 cd05774 Ig_CEACAM_D1 First imm 96.6 0.0095 2.1E-07 53.6 8.1 68 559-629 9-95 (105)
301 TIGR00864 PCC polycystin catio 96.6 3.4 7.5E-05 56.7 33.9 197 418-642 1569-1781(2740)
302 smart00015 IQ Short calmodulin 96.6 0.0023 5E-08 40.9 2.8 18 13-30 4-21 (26)
303 cd05718 Ig1_PVR_like First imm 96.6 0.016 3.6E-07 51.7 9.5 74 565-638 2-97 (98)
304 cd05880 Ig_EVA1 Immunoglobulin 96.5 0.019 4.1E-07 53.0 9.9 73 557-629 7-104 (115)
305 cd04982 IgV_TCR_gamma Immunogl 96.5 0.013 2.7E-07 54.4 8.7 69 557-625 7-98 (116)
306 TIGR00864 PCC polycystin catio 96.5 3.1 6.6E-05 57.2 32.8 191 417-640 1754-1950(2740)
307 cd05887 Ig1_Nectin-3_like Firs 96.5 0.02 4.4E-07 50.4 9.2 74 469-542 2-95 (96)
308 cd07705 Ig2_Necl-1 Second immu 96.5 0.025 5.3E-07 48.6 9.5 63 470-533 2-71 (83)
309 PF10179 DUF2369: Uncharacteri 96.4 1.7 3.7E-05 46.6 25.1 76 603-683 127-213 (300)
310 cd05846 Ig1_MRC-OX-2_like Firs 96.4 0.013 2.8E-07 52.3 7.9 76 467-542 1-96 (97)
311 KOG4802|consensus 96.4 0.032 7E-07 59.9 11.9 127 603-774 208-343 (516)
312 cd07700 IgV_CD8_beta Immunoglo 96.4 0.016 3.4E-07 52.8 8.5 67 463-529 2-93 (107)
313 cd04984 IgV_L_lambda Immunoglo 96.4 0.013 2.8E-07 52.4 7.7 68 559-626 2-85 (98)
314 cd05712 Ig_Siglec_N Immunoglob 96.4 0.018 3.8E-07 53.6 8.8 73 458-530 5-102 (119)
315 cd05761 Ig2_Necl-1-4_like Seco 96.4 0.024 5.2E-07 48.7 8.8 64 470-533 2-70 (82)
316 cd05716 Ig_pIgR Immunoglobulin 96.3 0.019 4.1E-07 51.3 8.2 70 462-531 2-87 (98)
317 smart00060 FN3 Fibronectin typ 96.2 0.016 3.5E-07 48.9 7.3 68 359-430 11-81 (83)
318 cd05755 Ig2_ICAM-1_like Second 96.2 0.024 5.3E-07 50.1 8.2 72 462-533 11-87 (100)
319 cd05741 Ig_CEACAM_D1_like Firs 96.2 0.019 4.1E-07 50.6 7.7 64 563-629 1-82 (92)
320 PHA03376 BARF1; Provisional 96.2 0.082 1.8E-06 51.1 12.0 78 404-490 85-162 (221)
321 cd00098 IgC Immunoglobulin Con 96.2 0.014 3.1E-07 51.8 6.9 68 465-532 11-86 (95)
322 cd05883 Ig2_Necl-2 Second immu 96.1 0.041 8.9E-07 46.6 8.9 62 470-531 2-67 (82)
323 cd05775 Ig_SLAM-CD84_like_N N- 96.1 0.02 4.3E-07 51.0 7.1 69 562-630 3-87 (97)
324 PHA03271 envelope glycoprotein 96.0 3 6.5E-05 45.7 23.8 230 405-653 206-459 (490)
325 cd05888 Ig1_Nectin-4_like Frst 96.0 0.038 8.2E-07 49.5 8.7 74 565-638 2-99 (100)
326 cd05720 Ig_CD8_alpha Immunoglo 96.0 0.019 4.2E-07 51.8 6.8 66 464-529 3-90 (104)
327 cd05715 Ig_P0-like Immunoglobu 96.0 0.049 1.1E-06 50.4 9.7 73 557-629 7-105 (116)
328 cd05884 Ig2_Necl-3 Second immu 96.0 0.037 7.9E-07 47.5 7.9 63 470-532 2-70 (83)
329 cd00098 IgC Immunoglobulin Con 95.9 0.031 6.7E-07 49.6 7.7 68 562-629 12-87 (95)
330 cd05886 Ig1_Nectin-1_like Firs 95.9 0.08 1.7E-06 47.1 10.1 37 602-638 61-98 (99)
331 cd07705 Ig2_Necl-1 Second immu 95.9 0.086 1.9E-06 45.2 9.9 64 566-630 2-72 (83)
332 KOG4367|consensus 95.9 0.012 2.7E-07 62.8 5.6 73 360-435 450-522 (699)
333 PTZ00014 myosin-A; Provisional 95.8 0.02 4.2E-07 70.8 8.0 42 39-84 777-818 (821)
334 cd05761 Ig2_Necl-1-4_like Seco 95.8 0.066 1.4E-06 45.9 9.0 65 566-630 2-71 (82)
335 cd00096 Ig Immunoglobulin doma 95.8 0.036 7.8E-07 45.1 7.4 62 470-531 1-66 (74)
336 cd05883 Ig2_Necl-2 Second immu 95.8 0.047 1E-06 46.3 7.6 63 566-628 2-68 (82)
337 PHA03270 envelope glycoprotein 95.7 3.3 7.2E-05 45.7 22.7 193 364-591 155-363 (466)
338 KOG0165|consensus 95.6 4.4 9.4E-05 47.8 24.5 110 6-121 340-478 (1023)
339 cd05901 Ig_Versican Immunoglob 95.6 0.14 3E-06 46.8 10.4 39 602-640 77-115 (117)
340 cd07698 IgC_MHC_I_alpha3 Class 95.6 0.092 2E-06 46.3 9.2 65 467-531 14-83 (93)
341 PF08205 C2-set_2: CD80-like C 95.6 0.12 2.5E-06 45.2 9.9 67 467-533 14-86 (89)
342 PF07686 V-set: Immunoglobulin 95.6 0.057 1.2E-06 49.6 8.4 70 557-626 10-101 (114)
343 cd05902 Ig_Neurocan Immunoglob 95.5 0.11 2.4E-06 47.1 9.6 39 602-640 70-108 (110)
344 cd04981 IgV_H Immunoglobulin ( 95.5 0.049 1.1E-06 50.4 7.3 71 459-529 4-97 (117)
345 cd05884 Ig2_Necl-3 Second immu 95.4 0.083 1.8E-06 45.3 8.1 64 566-629 2-71 (83)
346 PHA02987 Ig domain OX-2-like p 95.4 0.086 1.9E-06 51.4 8.9 84 558-641 25-124 (189)
347 PTZ00014 myosin-A; Provisional 95.3 0.041 9E-07 68.0 8.2 43 187-233 776-818 (821)
348 PF09294 Interfer-bind: Interf 95.3 0.041 8.8E-07 50.0 6.2 43 720-764 44-86 (106)
349 COG5261 IQG1 Protein involved 95.1 0.083 1.8E-06 62.1 9.0 18 133-150 405-422 (1054)
350 cd05887 Ig1_Nectin-3_like Firs 95.1 0.15 3.3E-06 44.9 8.8 74 565-638 2-95 (96)
351 cd05846 Ig1_MRC-OX-2_like Firs 95.1 0.11 2.4E-06 46.2 8.1 76 563-638 1-96 (97)
352 cd07706 IgV_TCR_delta Immunogl 95.0 0.11 2.5E-06 47.9 8.3 69 557-625 8-93 (116)
353 cd05755 Ig2_ICAM-1_like Second 94.8 0.13 2.9E-06 45.5 7.8 71 559-629 12-87 (100)
354 cd00096 Ig Immunoglobulin doma 94.7 0.14 3.1E-06 41.5 7.6 61 567-627 2-66 (74)
355 cd05889 Ig1_DNAM-1_like First 94.7 0.26 5.7E-06 43.4 9.3 68 469-536 2-89 (96)
356 smart00406 IGv Immunoglobulin 94.6 0.13 2.7E-06 43.8 7.1 58 469-526 1-80 (81)
357 cd05720 Ig_CD8_alpha Immunoglo 94.6 0.13 2.7E-06 46.5 7.3 66 560-625 3-90 (104)
358 cd05772 IgC_SIRP Signal-regula 94.6 0.47 1E-05 43.2 10.9 67 463-531 17-92 (111)
359 cd05716 Ig_pIgR Immunoglobulin 94.5 0.12 2.6E-06 46.1 7.0 69 559-627 3-87 (98)
360 cd05770 IgC_beta2m Class I maj 94.5 0.24 5.2E-06 43.4 8.5 64 465-530 13-82 (93)
361 PF01108 Tissue_fac: Tissue fa 94.5 0.35 7.7E-06 43.9 10.0 53 719-771 50-105 (107)
362 cd07700 IgV_CD8_beta Immunoglo 94.4 0.16 3.4E-06 46.2 7.6 67 559-625 2-93 (107)
363 cd07692 Ig_CD3_epsilon Immunog 94.4 0.072 1.6E-06 42.3 4.4 51 465-529 5-55 (65)
364 cd07694 Ig2_CD4 Second immunog 94.3 0.45 9.6E-06 40.5 9.2 62 559-626 10-73 (88)
365 cd05767 IgC_MHC_II_alpha Class 94.3 0.38 8.2E-06 42.3 9.3 64 466-530 14-83 (94)
366 smart00407 IGc1 Immunoglobulin 94.3 0.27 5.8E-06 41.3 8.1 62 470-531 2-71 (75)
367 PF10446 DUF2457: Protein of u 94.1 0.017 3.8E-07 63.1 0.6 20 1068-1087 123-142 (458)
368 PHA03269 envelope glycoprotein 94.0 9.8 0.00021 42.8 21.1 226 405-650 288-538 (566)
369 cd05712 Ig_Siglec_N Immunoglob 93.9 0.36 7.8E-06 44.8 9.0 69 557-625 8-101 (119)
370 cd07699 IgC_L Immunoglobulin C 93.8 0.11 2.3E-06 46.5 5.2 68 464-531 14-89 (100)
371 PHA03273 envelope glycoprotein 93.7 13 0.00028 41.9 21.4 161 406-586 198-376 (486)
372 smart00407 IGc1 Immunoglobulin 93.4 0.62 1.4E-05 39.0 8.8 62 566-627 2-71 (75)
373 cd05772 IgC_SIRP Signal-regula 93.4 0.75 1.6E-05 41.9 9.9 67 561-629 19-94 (111)
374 cd05766 IgC_MHC_II_beta Class 93.3 0.77 1.7E-05 40.4 9.6 66 466-531 13-83 (94)
375 cd07698 IgC_MHC_I_alpha3 Class 93.3 0.42 9.2E-06 42.0 8.0 65 563-627 14-83 (93)
376 PHA02982 hypothetical protein; 93.1 0.99 2.1E-05 44.4 10.5 119 461-588 33-173 (251)
377 KOG1480|consensus 93.1 0.067 1.5E-06 62.4 3.2 173 450-630 22-209 (909)
378 cd05889 Ig1_DNAM-1_like First 92.9 0.32 7E-06 42.9 6.6 76 353-428 4-82 (96)
379 KOG3632|consensus 92.8 0.61 1.3E-05 56.0 10.4 155 615-772 643-857 (1335)
380 KOG4152|consensus 92.3 0.2 4.3E-06 55.6 5.3 67 748-816 650-717 (830)
381 cd04981 IgV_H Immunoglobulin ( 92.3 0.58 1.3E-05 43.2 7.8 69 557-625 6-97 (117)
382 cd05719 Ig2_PVR_like Second im 92.0 1.2 2.5E-05 39.4 8.9 65 468-533 16-84 (95)
383 cd07692 Ig_CD3_epsilon Immunog 91.9 0.39 8.5E-06 38.2 5.1 52 560-625 4-55 (65)
384 cd05847 IgC_CH2_IgE CH2 domain 91.9 1.1 2.3E-05 39.5 8.6 67 466-532 13-87 (94)
385 PF08205 C2-set_2: CD80-like C 91.8 1.2 2.7E-05 38.6 9.0 67 563-629 14-86 (89)
386 TIGR00868 hCaCC calcium-activa 91.3 49 0.0011 41.6 27.7 72 699-770 766-854 (863)
387 PF10179 DUF2369: Uncharacteri 91.2 25 0.00054 38.0 23.5 28 403-430 12-39 (300)
388 KOG4228|consensus 91.1 0.55 1.2E-05 58.0 7.7 236 522-779 1-250 (1087)
389 cd05767 IgC_MHC_II_alpha Class 91.0 1 2.3E-05 39.5 7.6 30 563-592 15-46 (94)
390 KOG4427|consensus 90.7 0.69 1.5E-05 53.9 7.6 42 265-306 18-59 (1096)
391 smart00406 IGv Immunoglobulin 90.7 0.8 1.7E-05 38.7 6.6 57 566-622 2-80 (81)
392 PF07654 C1-set: Immunoglobuli 90.7 1.7 3.6E-05 37.3 8.5 63 467-532 8-78 (83)
393 cd05770 IgC_beta2m Class I maj 90.6 1.1 2.4E-05 39.3 7.3 63 563-626 15-82 (93)
394 cd05721 IgV_CTLA-4 Immunoglobu 90.6 1.4 3.1E-05 39.8 7.9 68 460-527 6-93 (115)
395 cd05768 IgC_CH4 CH4 domain (fo 90.2 0.72 1.6E-05 41.4 5.9 32 464-495 13-46 (102)
396 PHA03270 envelope glycoprotein 89.7 16 0.00036 40.6 16.5 78 509-591 183-265 (466)
397 cd07691 Ig_CD3_gamma_delta Imm 89.5 0.63 1.4E-05 37.4 4.3 49 467-529 6-54 (69)
398 PF01108 Tissue_fac: Tissue fa 88.7 1.2 2.6E-05 40.4 6.3 70 360-431 32-104 (107)
399 cd07697 IgC_TCR_gamma T cell r 88.7 1.6 3.4E-05 38.6 6.8 64 465-530 14-84 (96)
400 cd07696 IgC_CH3 CH3 domain (th 88.5 2.5 5.5E-05 37.3 8.0 28 464-491 11-41 (96)
401 cd05766 IgC_MHC_II_beta Class 88.4 4 8.7E-05 35.9 9.3 31 562-592 13-45 (94)
402 PF10446 DUF2457: Protein of u 88.3 0.42 9.1E-06 52.7 3.5 23 1006-1028 42-64 (458)
403 cd07703 Ig2_Nectin-2_like Seco 88.3 2 4.3E-05 37.8 7.1 65 469-534 17-85 (95)
404 cd07699 IgC_L Immunoglobulin C 88.2 2.6 5.7E-05 37.6 8.1 65 563-627 17-89 (100)
405 PF07654 C1-set: Immunoglobuli 88.1 2.7 5.8E-05 36.0 7.9 64 563-629 8-79 (83)
406 KOG4597|consensus 88.0 0.91 2E-05 50.3 5.8 120 420-543 166-292 (560)
407 PHA03271 envelope glycoprotein 87.8 32 0.00069 38.1 16.9 78 509-591 208-291 (490)
408 cd05847 IgC_CH2_IgE CH2 domain 87.2 4.3 9.3E-05 35.7 8.7 66 563-628 14-87 (94)
409 cd07697 IgC_TCR_gamma T cell r 87.2 2.3 5.1E-05 37.5 6.9 30 563-592 16-47 (96)
410 KOG0942|consensus 87.1 0.69 1.5E-05 55.5 4.6 18 40-57 30-47 (1001)
411 PF02010 REJ: REJ domain; Int 87.1 0.79 1.7E-05 53.9 5.3 232 405-642 37-301 (440)
412 COG5261 IQG1 Protein involved 86.9 2.8 6E-05 50.1 9.1 40 160-199 405-446 (1054)
413 cd05769 IgC_TCR_beta T cell re 86.7 3.4 7.3E-05 37.9 7.9 69 464-533 15-94 (115)
414 PF08204 V-set_CD47: CD47 immu 86.2 3.1 6.7E-05 38.6 7.4 79 463-542 23-119 (130)
415 PF06524 NOA36: NOA36 protein; 86.1 0.53 1.2E-05 47.6 2.5 11 760-770 172-182 (314)
416 cd05768 IgC_CH4 CH4 domain (fo 86.0 2.6 5.7E-05 37.7 6.8 29 563-591 16-46 (102)
417 PHA03273 envelope glycoprotein 85.5 35 0.00076 38.6 16.1 77 509-590 199-280 (486)
418 KOG3632|consensus 85.2 1.2 2.7E-05 53.6 5.3 102 698-812 682-795 (1335)
419 PHA02982 hypothetical protein; 85.1 6 0.00013 39.2 8.9 106 559-680 35-160 (251)
420 PTZ00415 transmission-blocking 85.1 0.44 9.5E-06 60.3 1.7 36 1004-1039 140-175 (2849)
421 cd07691 Ig_CD3_gamma_delta Imm 84.8 3.3 7.2E-05 33.3 5.9 49 563-625 6-54 (69)
422 cd04986 IgC_CH2 CH2 domain (se 84.7 3.3 7.2E-05 36.7 6.6 29 464-492 16-47 (99)
423 KOG1832|consensus 84.6 0.57 1.2E-05 55.6 2.3 6 285-290 614-619 (1516)
424 cd07696 IgC_CH3 CH3 domain (th 84.5 7 0.00015 34.5 8.7 28 560-587 11-41 (96)
425 PF05764 YL1: YL1 nuclear prot 84.4 0.67 1.4E-05 48.8 2.5 32 1010-1041 36-67 (240)
426 cd07689 Ig2_VCAM-1 Second immu 84.4 4.9 0.00011 35.3 7.3 66 464-530 12-85 (99)
427 cd05719 Ig2_PVR_like Second im 84.1 7.8 0.00017 34.1 8.8 65 565-630 17-85 (95)
428 cd04985 IgC_CH1 CH1 domain (fi 84.0 6.2 0.00013 34.8 8.1 27 466-492 15-43 (95)
429 PHA03269 envelope glycoprotein 83.9 27 0.00058 39.5 14.4 79 508-591 289-373 (566)
430 PF09067 EpoR_lig-bind: Erythr 82.5 9.3 0.0002 34.2 8.6 50 720-770 38-95 (104)
431 KOG4427|consensus 82.2 12 0.00026 44.3 11.3 17 755-771 736-752 (1096)
432 cd07703 Ig2_Nectin-2_like Seco 81.3 8.6 0.00019 33.8 7.9 68 565-633 17-88 (95)
433 PHA02633 hypothetical protein; 80.8 4.1 8.8E-05 32.0 4.8 38 509-546 19-56 (63)
434 cd05721 IgV_CTLA-4 Immunoglobu 80.2 9.3 0.0002 34.7 7.7 65 558-623 8-93 (115)
435 PF03115 Astro_capsid: Astrovi 80.0 0.56 1.2E-05 57.1 0.0 17 414-430 185-201 (787)
436 COG4733 Phage-related protein, 79.8 20 0.00043 43.5 12.2 66 722-790 639-704 (952)
437 KOG4228|consensus 78.8 15 0.00033 46.0 11.4 141 618-815 1-143 (1087)
438 PF09067 EpoR_lig-bind: Erythr 78.7 7.4 0.00016 34.9 6.7 83 346-432 6-96 (104)
439 KOG1832|consensus 78.1 1.5 3.3E-05 52.3 2.7 9 978-986 1371-1379(1516)
440 KOG3241|consensus 77.9 1.2 2.7E-05 42.1 1.5 22 1024-1045 193-214 (227)
441 KOG1026|consensus 77.5 2.8 6.1E-05 50.6 4.8 163 461-642 201-366 (774)
442 PF06328 Lep_receptor_Ig: Ig-l 77.5 13 0.00028 32.3 7.6 66 459-526 10-80 (89)
443 KOG0377|consensus 76.9 3.2 6.9E-05 45.6 4.5 20 40-59 18-37 (631)
444 KOG0942|consensus 76.8 88 0.0019 38.6 16.4 32 58-89 21-52 (1001)
445 cd05769 IgC_TCR_beta T cell re 76.0 17 0.00036 33.4 8.4 30 563-592 18-49 (115)
446 cd07704 Ig2_Nectin-3-4_like Se 75.0 20 0.00044 31.6 8.2 69 462-531 11-84 (97)
447 cd07689 Ig2_VCAM-1 Second immu 74.7 14 0.0003 32.5 7.0 67 560-627 12-86 (99)
448 PF07354 Sp38: Zona-pellucida- 74.6 4.4 9.6E-05 42.0 4.6 47 577-626 12-59 (271)
449 KOG1480|consensus 74.3 0.59 1.3E-05 54.9 -1.8 110 416-535 100-210 (909)
450 KOG0162|consensus 74.1 11 0.00023 44.6 7.9 29 40-72 697-725 (1106)
451 PF08204 V-set_CD47: CD47 immu 73.8 5.9 0.00013 36.8 4.8 76 563-639 27-120 (130)
452 COG4733 Phage-related protein, 73.7 1.4E+02 0.0029 36.8 16.8 24 750-773 762-785 (952)
453 PLN02533 probable purple acid 72.5 27 0.00059 40.5 11.1 21 743-763 101-121 (427)
454 PF03066 Nucleoplasmin: Nucleo 72.2 1.8 3.8E-05 41.6 1.1 9 980-988 97-105 (149)
455 KOG3871|consensus 72.1 1.2 2.6E-05 47.5 -0.1 34 1022-1055 101-135 (449)
456 PF07354 Sp38: Zona-pellucida- 72.0 5.2 0.00011 41.5 4.4 48 480-530 11-59 (271)
457 KOG3117|consensus 70.4 3.5 7.6E-05 42.8 2.8 76 1007-1088 136-212 (340)
458 COG3401 Fibronectin type 3 dom 70.4 57 0.0012 35.4 11.7 151 609-771 129-332 (343)
459 PHA03042 CD47-like protein; Pr 70.3 25 0.00054 36.8 8.7 66 464-536 28-98 (286)
460 cd04986 IgC_CH2 CH2 domain (se 69.6 11 0.00023 33.5 5.3 27 562-588 18-47 (99)
461 KOG4806|consensus 68.7 1.8E+02 0.0039 31.7 16.8 139 610-771 290-436 (454)
462 KOG1189|consensus 68.6 2.3 5E-05 50.0 1.2 43 1013-1055 899-941 (960)
463 PF03115 Astro_capsid: Astrovi 68.1 1.7 3.6E-05 53.1 0.0 8 617-624 365-372 (787)
464 COG5406 Nucleosome binding fac 68.0 3.3 7.2E-05 47.5 2.3 22 1016-1037 951-972 (1001)
465 PF03921 ICAM_N: Intercellular 67.7 83 0.0018 27.4 12.1 83 456-546 7-89 (91)
466 COG3401 Fibronectin type 3 dom 66.5 1.3E+02 0.0027 32.9 13.3 111 312-431 130-240 (343)
467 cd07704 Ig2_Nectin-3-4_like Se 65.6 47 0.001 29.3 8.5 64 559-627 12-84 (97)
468 PHA03042 CD47-like protein; Pr 65.6 33 0.00072 35.9 8.6 67 563-636 31-102 (286)
469 PHA02914 Immunoglobulin-like d 64.9 65 0.0014 35.6 10.8 122 460-590 272-422 (500)
470 PF03066 Nucleoplasmin: Nucleo 63.7 2.3 5E-05 40.9 0.0 6 938-943 101-106 (149)
471 KOG3130|consensus 63.5 4.2 9E-05 44.1 1.8 24 1031-1054 289-313 (514)
472 KOG0262|consensus 63.3 6.6 0.00014 49.1 3.6 39 1035-1073 1338-1377(1640)
473 PF07495 Y_Y_Y: Y_Y_Y domain; 63.3 15 0.00033 29.5 4.8 36 732-771 19-54 (66)
474 KOG0162|consensus 62.8 14 0.00031 43.5 6.0 22 67-88 697-718 (1106)
475 PF11465 Receptor_2B4: Natural 62.6 46 0.00099 29.7 7.6 51 484-536 46-99 (108)
476 PHA02608 67 prohead core prote 62.3 4.5 9.8E-05 32.8 1.4 8 1039-1046 72-79 (80)
477 KOG0943|consensus 61.1 6.2 0.00014 48.7 2.9 27 962-988 1686-1712(3015)
478 cd04985 IgC_CH1 CH1 domain (fi 59.3 31 0.00068 30.3 6.4 26 563-588 16-43 (95)
479 PHA02633 hypothetical protein; 59.2 23 0.00049 28.0 4.6 39 603-641 17-55 (63)
480 COG5406 Nucleosome binding fac 59.1 5.7 0.00012 45.7 2.0 41 1006-1046 935-977 (1001)
481 PF09294 Interfer-bind: Interf 57.3 20 0.00043 32.2 5.0 66 359-426 11-87 (106)
482 PF06832 BiPBP_C: Penicillin-B 56.5 95 0.0021 26.8 8.9 56 469-536 31-86 (89)
483 PF06328 Lep_receptor_Ig: Ig-l 55.8 70 0.0015 27.8 7.7 62 559-622 14-80 (89)
484 KOG0377|consensus 55.6 48 0.001 36.9 8.1 23 66-88 17-39 (631)
485 KOG1824|consensus 55.4 5.1 0.00011 48.7 0.9 27 1022-1048 319-345 (1233)
486 PRK14081 triple tyrosine motif 55.0 4.8E+02 0.01 31.9 34.1 376 314-769 251-652 (667)
487 KOG2652|consensus 53.4 8.3 0.00018 41.4 2.0 39 1014-1052 256-295 (348)
488 PF05320 Pox_RNA_Pol_19: Poxvi 52.2 4.6 9.9E-05 37.7 -0.1 26 1009-1034 1-26 (167)
489 PHA02914 Immunoglobulin-like d 51.8 1.7E+02 0.0037 32.6 11.3 107 557-680 273-405 (500)
490 PF04147 Nop14: Nop14-like fam 51.7 9.1 0.0002 48.4 2.4 44 1006-1049 344-387 (840)
491 KOG2055|consensus 50.1 11 0.00023 42.2 2.2 78 1000-1078 45-122 (514)
492 KOG0262|consensus 49.2 10 0.00022 47.5 2.1 52 1007-1068 1327-1394(1640)
493 TIGR00927 2A1904 K+-dependent 48.7 12 0.00025 46.4 2.4 49 1006-1054 849-897 (1096)
494 PF05764 YL1: YL1 nuclear prot 48.5 13 0.00027 39.3 2.5 41 1005-1045 35-75 (240)
495 PF02724 CDC45: CDC45-like pro 48.5 11 0.00023 46.0 2.2 43 1007-1049 125-167 (622)
496 PF08763 Ca_chan_IQ: Voltage g 46.9 25 0.00053 24.2 2.7 17 279-295 11-27 (35)
497 KOG0699|consensus 46.3 12 0.00027 40.2 1.9 51 999-1049 248-307 (542)
498 KOG0127|consensus 46.1 11 0.00023 43.0 1.5 46 1005-1050 210-268 (678)
499 PF09240 IL6Ra-bind: Interleuk 45.8 1E+02 0.0022 27.3 7.6 78 350-430 1-85 (99)
500 PF02010 REJ: REJ domain; Int 45.7 9.8 0.00021 44.7 1.3 229 311-547 44-302 (440)
No 1
>KOG3513|consensus
Probab=100.00 E-value=2.4e-55 Score=511.99 Aligned_cols=585 Identities=22% Similarity=0.252 Sum_probs=457.0
Q ss_pred HHHhhhhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcC
Q psy8139 300 IEQKKQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP 379 (1101)
Q Consensus 300 ~~~~~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~ 379 (1101)
...++++.|.|.|+..+|+|.|.|.|+|..|.. .-...+.+..+|.--..|.... ......+++.|.+- |.|
T Consensus 288 ~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~-~~~~~v~v~a~P~w~~~~~d~~---~~~gs~v~~eC~a~----g~P 359 (1051)
T KOG3513|consen 288 TYSNYGKVLKIPNVQYEDAGEYECIAENSRGSA-THSGHVTVYAPPYWLQKPQDTE---ADTGSNVTLECKAS----GKP 359 (1051)
T ss_pred eeeccccEEEecccCcCCCeEEEEEEecccccc-eeeEEEEEecCchhhcccceeE---ecCCCCeEEEEEec----CCC
Confidence 345688889999999999999999999999944 4447888888887666665542 22334455555553 222
Q ss_pred eeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecC
Q psy8139 380 VLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRAL 459 (1101)
Q Consensus 380 i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p 459 (1101)
--.|........-..-.+.-......+.|.|++|++.|+|.|+|.|.|..|....+ +.+.| . ..+|.|...|
T Consensus 360 ~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~an---A~L~V--~---a~~P~f~~~p 431 (1051)
T KOG3513|consen 360 NPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYAN---AELKV--L---ASAPVFPLNP 431 (1051)
T ss_pred CCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeee---eEEEE--E---ccCCCCCCCc
Confidence 22222221110000000000122355789999999999999999999999987644 33444 3 3556666665
Q ss_pred cee--EEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE
Q psy8139 460 HDT--TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK 537 (1101)
Q Consensus 460 ~~~--~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s 537 (1101)
-.. .+..|..+.+.|.+.+.|.|.++|.+.+..+..+.++.+..+| +|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 432 ~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~ 508 (1051)
T KOG3513|consen 432 VERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAEST 508 (1051)
T ss_pred cceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceE
Confidence 443 6789999999999999999999999999877778888887766 79999999999999999999999999999
Q ss_pred EEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC--CCeeEEEECCeecCC---CCceEEEeecceEEEEEccCC
Q psy8139 538 ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP--PPTARWLHNGEPLTS---GGRYEITHTDRYLNLRISDAR 612 (1101)
Q Consensus 538 ~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p--~~~v~W~~~g~~l~~---~~~~~~~~~~~~~sl~i~~l~ 612 (1101)
+.|.|..++.+..+|.. ..+..|..+.|.|.+..++ .+.+.|.++|..+.. +.++......+.+.|+|.+++
T Consensus 509 ~~L~Vkd~tri~~~P~~---~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~ 585 (1051)
T KOG3513|consen 509 GNLIVKDATRITLAPSN---TDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVS 585 (1051)
T ss_pred EEEEEecCceEEeccch---hhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeec
Confidence 99999999999886653 3788899999999999877 468999999998763 344544433334679999999
Q ss_pred CCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcc
Q psy8139 613 RADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQL 692 (1101)
Q Consensus 613 ~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~ 692 (1101)
..+.|.|.|+|.....+.+..+.+.|.++|+||.++.+..++.+++.|+|.+..
T Consensus 586 l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~-------------------------- 639 (1051)
T KOG3513|consen 586 LEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHVDDISDTTARLSWSPGS-------------------------- 639 (1051)
T ss_pred cccCceEEEEEEEeecchhcccceEEecCCCCCCceeEeeeccceEEEEeecCC--------------------------
Confidence 999999999999988888888999999999999999999999999999999644
Q ss_pred cCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCcc---EEEEcCCCCCceEEEEEEEEcCCc
Q psy8139 693 LPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT---ELMVSGLEPGWRYQFRITAENVVG 769 (1101)
Q Consensus 693 ~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~---~~~i~~L~p~t~Y~~~V~A~n~~G 769 (1101)
++++||..|.|+.+..-...|..+...+...+ +.++.+|.|+..|+|||.|+|..|
T Consensus 640 ---------------------dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG 698 (1051)
T KOG3513|consen 640 ---------------------DNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIG 698 (1051)
T ss_pred ---------------------CCCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccc
Confidence 33345667777777666667877665433333 678889999999999999999999
Q ss_pred cCCCCCCCCcEEecCCCCCCCCCcccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEee
Q psy8139 770 FSEPGPLSEPLTVTYQRSPAAAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISS 847 (1101)
Q Consensus 770 ~g~~S~~s~~~t~~~~~~P~~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~ 847 (1101)
.|+||++|....+ .+++|...|.++. ....+..++.|.| +. ....+|+.+ +|+|.
T Consensus 699 ~gePS~pS~~~rT-~ea~P~~~P~nv~g~g~~~~eLvItW~P---------l~-~~~qNG~gf------------gY~Vs 755 (1051)
T KOG3513|consen 699 IGEPSPPSEKVRT-PEAAPSVNPSNVKGGGGSPTELVITWEP---------LP-EEEQNGPGF------------GYRVS 755 (1051)
T ss_pred cCCCCCCccceec-CCCCCccCCccccccCCCCceEEEEecc---------CC-HHHccCCCc------------eEEEE
Confidence 9999999988765 4689999999998 4455566777866 22 446789999 99999
Q ss_pred eeccCCCCCCceeeeec---cccccCCCCCCCCCccCcccce--eeccccccc---CceeecccCCCCccCCCCCChhhh
Q psy8139 848 FRDKYVDNEDDYDIVET---NEHTGTGAPSDNENESDYFPEK--TIDESVYGY---DTIVYGYDSDDLDRHYPTLDEEEE 919 (1101)
Q Consensus 848 ~r~~~~~~~~~~~~v~~---~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~---~~~v~~~t~e~~P~~~P~~v~~~~ 919 (1101)
|+..+....|....+.+ +.++..+.. -.+|++|+ |+|+|..|. |.+++++++|+.|..+|+.+.+..
T Consensus 756 wr~~g~~~~W~~~~v~~~d~~~~V~~~~s-----t~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~ 830 (1051)
T KOG3513|consen 756 WRPQGADKEWKEVIVSNQDQPRYVVSNES-----TEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKP 830 (1051)
T ss_pred EEeCCCCcccceeEecccCCceEEEcCCC-----CCCcceeEEEEEEecCCCCCCCCceEEEEcCCCCCCCCCccceeec
Confidence 99999888999988876 455554444 23599999 999999998 899999999999999999999999
Q ss_pred hhhhhhhccc---cccccccchhhcccccchhhhhhccccccccccc-ccCCceeEeecCCCCCCCceeec-ee
Q psy8139 920 EEDRESLVKD---RESSVKGKEEEAKVIKDDEYYENLGDVLTKKYSL-PVNSDIQIKIDKPDDEPDYVIKG-KY 988 (1101)
Q Consensus 920 ~~~n~t~v~v---p~~~~nG~i~gY~I~~~~~~y~~~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~~~~~~-~~ 988 (1101)
. +++.+.| |+...||+++||.| .||+.++........ ..+..+.+.|.||++.+-|-|+- +|
T Consensus 831 ~--s~s~~~v~W~~~~~~nG~l~gY~v-----~Y~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~ 897 (1051)
T KOG3513|consen 831 L--SSSEVNLSWKPPLWDNGKLTGYEV-----KYWKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAY 897 (1051)
T ss_pred c--cCceEEEEecCcCccCCccceeEE-----EEEEcCCCcccccceeecCCcceEeeeCCCCCceEEEEEEEe
Confidence 9 6666666 77888899999999 999998875322222 22566688999999999999886 44
No 2
>KOG4221|consensus
Probab=100.00 E-value=3.7e-50 Score=462.97 Aligned_cols=638 Identities=19% Similarity=0.237 Sum_probs=459.4
Q ss_pred HHHHHHHhhhhhhhhhcccc-----cCcceEEEeeecc-cccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEE
Q psy8139 296 FADIIEQKKQAKKTADNQFE-----NQAPLYVRLEEAI-TGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRW 369 (1101)
Q Consensus 296 ~~~~~~~~~~~~l~i~~~~~-----~d~g~Y~c~a~n~-~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W 369 (1101)
+.+.+++-..++|.|.++.. .++|+|+|.|.-. .|.-.+....+.+...+..-..+.... -.-..++.++|
T Consensus 86 ~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t---~~~g~ta~f~c 162 (1381)
T KOG4221|consen 86 YDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTT---LLYGQTALFSC 162 (1381)
T ss_pred hhhHHhhccCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCcccee---EecCCcEEEEE
Confidence 34556667889999999988 9999999999554 343334445555555444332222210 11233444444
Q ss_pred eCCCCCCCcCeeEEEEEEEecCC-CceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccC
Q psy8139 370 EPPEYDGGSPVLGYLVEHRRTGS-PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS 448 (1101)
Q Consensus 370 ~~p~~~g~~~i~~Y~v~~~~~~~-~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~ 448 (1101)
... +.+.. .+.|..... ..|.. ......++.|.|.+|+|+|.|.|+|.+.+...... |....+++...
T Consensus 163 ~vn----~e~~p--~i~w~kn~~pl~~~~-r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~----S~~a~ltv~s~ 231 (1381)
T KOG4221|consen 163 EVN----AEPVP--TIMWLKNDQPLPLDS-RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRT----SNEAELTVLSD 231 (1381)
T ss_pred EEc----CccCc--eeEEecccccccCCC-cEEEcCCCcEEecccccCCCceEEEEEecCCcCCc----cceeEEEecCC
Confidence 322 11111 122222111 11111 12224568899999999999999999998654433 34444544422
Q ss_pred --CCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139 449 --PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCT 526 (1101)
Q Consensus 449 --~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~ 526 (1101)
....-.|...|.+..+..|+++.|.|.+.|.|.|.|.|.+||..+...+ +++... +.+.|.|++++..|+|.|+|.
T Consensus 232 ~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~-g~~slliS~a~~~dSg~YtC~ 309 (1381)
T KOG4221|consen 232 PGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLV-GGSSLLISNATDDDSGKYTCR 309 (1381)
T ss_pred cccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEe-cccceEEeccccccCceEEEE
Confidence 2223346788999999999999999999999999999999999887665 333332 234899999999999999999
Q ss_pred EEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEE
Q psy8139 527 ATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNL 606 (1101)
Q Consensus 527 a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl 606 (1101)
|.|......+++.|.|..+|.+...|. ++...++..+.+.|.+.|.|.+.+.|++||..+..+..+++...+ .+
T Consensus 310 Atn~~D~idasaev~V~a~P~~~~~p~---~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~---~l 383 (1381)
T KOG4221|consen 310 ATNTNDSIDASAEVTVLAPPGFTKAPT---TLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGG---NL 383 (1381)
T ss_pred ecCCCcccccceEEEEEcCCCCCCCCc---ceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCC---Cc
Confidence 999888888899999999999876654 457778999999999999999999999999998886666665432 28
Q ss_pred EEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecC---------CCCCCccEEEEecCCeEEEEeecCCCCCCcccceeE
Q psy8139 607 RISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR---------PLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYI 677 (1101)
Q Consensus 607 ~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~---------P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~ 677 (1101)
.|.++-..|.|.|.|.|.|..|.....+.+.+... |..|..+.+..+....+.++|.+|. ..+..|..|.
T Consensus 384 rIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~-~~~g~i~~~~ 462 (1381)
T KOG4221|consen 384 RILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPA-QISGNISTYT 462 (1381)
T ss_pred EEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCcc-ccCCCcceEE
Confidence 88888889999999999999999888877755433 4566777788888899999999887 5555888888
Q ss_pred EEEE--------------------------------cC-------CCCCCCCccc---------CCCCCCCCceEEEEee
Q psy8139 678 VEYF--------------------------------RP-------PGPPGKPQLL---------PDSPSLDRDVFTIRWE 709 (1101)
Q Consensus 678 v~~~--------------------------------~~-------~~~p~~p~~~---------~~~~~~~~~si~l~W~ 709 (1101)
+.|. ++ .|.++.|..+ ..+-..++.++.+.|.
T Consensus 463 v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~We 542 (1381)
T KOG4221|consen 463 VFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWE 542 (1381)
T ss_pred EEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEec
Confidence 8771 11 1222222221 2333578899999999
Q ss_pred CCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCC
Q psy8139 710 PPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPA 789 (1101)
Q Consensus 710 pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~ 789 (1101)
+|... |++|++|++.|...+.+.|..+. .+.++++|.||.|+|.|.|+|.|+|.+|.|..|....+.|+. +.|+
T Consensus 543 pP~~~-n~~I~~yk~~ys~~~~~~~~~~~---~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls--d~Ps 616 (1381)
T KOG4221|consen 543 PPPFG-NGPITGYKLFYSEDDTGKELRVE---NNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS--DVPS 616 (1381)
T ss_pred CCCCC-CCCceEEEEEEEcCCCCceEEEe---cCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEecc--CCCC
Confidence 99654 46799999999999777777765 588999999999999999999999999999988776666666 9999
Q ss_pred CCCcccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeeecccc
Q psy8139 790 AAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEH 867 (1101)
Q Consensus 790 ~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~ 867 (1101)
+||.++. ..+++++.+.|.||... ..++.+. .|++.|+....+.+.++.-+.
T Consensus 617 aPP~Nl~lev~sStsVrVsW~pP~~~----------t~ng~it------------gYkIRy~~~~~~~~~~~t~v~---- 670 (1381)
T KOG4221|consen 617 APPQNLSLEVVSSTSVRVSWLPPPSE----------TQNGQIT------------GYKIRYRKLSREDEVNETVVK---- 670 (1381)
T ss_pred CCCcceEEEecCCCeEEEEccCCCcc----------cccceEE------------EEEEEecccCcccccceeecc----
Confidence 9999887 66677788999886442 3445555 899999988877766554443
Q ss_pred ccCCCCCCCCCccCcccce--eeccccccc---CceeecccCCCC-cc---CCCCCChhhhhhhhhhhccc-cccccccc
Q psy8139 868 TGTGAPSDNENESDYFPEK--TIDESVYGY---DTIVYGYDSDDL-DR---HYPTLDEEEEEEDRESLVKD-RESSVKGK 937 (1101)
Q Consensus 868 ~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~---~~~v~~~t~e~~-P~---~~P~~v~~~~~~~n~t~v~v-p~~~~nG~ 937 (1101)
++.+...+.+|++.|.|. |.|+|..|. +..+..-|.+.. +. .+|..+.+.... ++..+.| ||...+-.
T Consensus 671 -~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~~g~-~si~vsW~Pp~~~~~~ 748 (1381)
T KOG4221|consen 671 -GNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELHVHPGS-NSIVVSWTPPPHPNIV 748 (1381)
T ss_pred -cchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCceeeeccCc-eeEEEEeCCCCChhhh
Confidence 223333444455999999 888888887 666666665433 33 466666776661 3444444 88888899
Q ss_pred hhhcccccchhhhhhcccccccccccccCCceeEeecCCCCCCCceeec-eeeechhhh
Q psy8139 938 EEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKG-KYEVDNEML 995 (1101)
Q Consensus 938 i~gY~I~~~~~~y~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~ 995 (1101)
|.||+| +|+.-.+....+-.+-...+.++.|..++++-+|+||- +|-..+++.
T Consensus 749 vrgY~i-----g~r~g~~~p~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~ 802 (1381)
T KOG4221|consen 749 VRGYKI-----GYRPGSGIPDTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGN 802 (1381)
T ss_pred hcceEE-----eeecccCCCCCccEEecceeeEEEEEecccCceEEEEEEEeccCCCCc
Confidence 999999 77644444434333334456678888899999999998 777666665
No 3
>KOG4221|consensus
Probab=100.00 E-value=5.2e-46 Score=428.83 Aligned_cols=650 Identities=17% Similarity=0.195 Sum_probs=449.8
Q ss_pred hhhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCC---CCCCCCeeEEEEeCCCCCCCcCe
Q psy8139 304 KQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDS---PSLDRDVFTIRWEPPEYDGGSPV 380 (1101)
Q Consensus 304 ~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~---~~~~~~sv~l~W~~p~~~g~~~i 380 (1101)
..+.|.|.++.++|+|.|.|+|++......|....+++..-|..-....++... ..+....+.|.|....
T Consensus 191 psG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~------- 263 (1381)
T KOG4221|consen 191 PSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSG------- 263 (1381)
T ss_pred CCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecC-------
Confidence 567899999999999999999977766666666666666433322111110000 0123344444444321
Q ss_pred eEEEEEEEecCCCceEEcCc---------cccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCC
Q psy8139 381 LGYLVEHRRTGSPYWVRASP---------HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA 451 (1101)
Q Consensus 381 ~~Y~v~~~~~~~~~w~~~~~---------~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~ 451 (1101)
.+.....|.+.+. ......+|.|++++..|+|.|+|.|.|..-.... ++.++|. .
T Consensus 264 -------~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~ida---saev~V~------a 327 (1381)
T KOG4221|consen 264 -------VPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDA---SAEVTVL------A 327 (1381)
T ss_pred -------CCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCccccc---ceEEEEE------c
Confidence 1111112222111 1123467999999999999999999994433332 3445553 6
Q ss_pred CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA 531 (1101)
Q Consensus 452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~ 531 (1101)
+|.|...|.++...++.++.|.|.+.|.|.|.+.|++||..+..+..+.+...+ .+.|..+...|+|.|+|.+.|..
T Consensus 328 ~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~---~lrIlgi~~sdeg~yQcvaen~~ 404 (1381)
T KOG4221|consen 328 PPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGG---NLRILGIVKSDEGFYQCVAENDA 404 (1381)
T ss_pred CCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCC---CcEEEEEecccchhhhhhhccCc
Confidence 788999999999999999999999999999999999999998887777765544 39999999999999999999999
Q ss_pred CceEEEEEEeeccCCccc---cCCCCCCCeEEeeCCEEEEEEEEe-----ecCCCeeEEEE-CCeecCCCCceEEEeecc
Q psy8139 532 GHSITKARLRLEAPPTIR---LPKQYEDGLLFEMGEIIKLKVSMA-----GMPPPTARWLH-NGEPLTSGGRYEITHTDR 602 (1101)
Q Consensus 532 g~~~~s~~l~V~~~p~~~---~~~~~~~~~~v~~g~~~~l~c~~~-----g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~ 602 (1101)
|.....+.+.+...|.+. .-+..+..+.+..-....+.|++. +.+.+.++|+. ++..+. .+.....+.+
T Consensus 405 G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~r--er~~~tss~g 482 (1381)
T KOG4221|consen 405 GSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVR--ERLQNTSSPG 482 (1381)
T ss_pred ccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchh--hhheeccCCc
Confidence 999988877665433221 112222334444455555666665 22345677764 222222 1222222222
Q ss_pred eEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEE--
Q psy8139 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY-- 680 (1101)
Q Consensus 603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~-- 680 (1101)
..+++.+|.+...|.|+|.|.|..|.+.++..|.|.++|.+|..+.+...+..++.+.|++|...|| +|++|.+.|
T Consensus 483 -~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~-~I~~yk~~ys~ 560 (1381)
T KOG4221|consen 483 -IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNG-PITGYKLFYSE 560 (1381)
T ss_pred -eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCC-CceEEEEEEEc
Confidence 6788999999999999999999999999999999999998887788999999999999999986665 999999988
Q ss_pred ------------------------------------------------EcCCCCCCCCcccCCCCCCCCceEEEEeeCC-
Q psy8139 681 ------------------------------------------------FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPP- 711 (1101)
Q Consensus 681 ------------------------------------------------~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP- 711 (1101)
.+..+.|++|+........++++|.|+|.||
T Consensus 561 ~~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~ 640 (1381)
T KOG4221|consen 561 DDTGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPP 640 (1381)
T ss_pred CCCCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCC
Confidence 2225677888876666778999999999985
Q ss_pred CCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCC--C
Q psy8139 712 EYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP--A 789 (1101)
Q Consensus 712 ~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P--~ 789 (1101)
....++.|++|.|.|+..............++.+.+.+.+|.|+|.|.|+|.|.|..|.|++|.+...-|...+..+ +
T Consensus 641 ~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp 720 (1381)
T KOG4221|consen 641 SETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVP 720 (1381)
T ss_pred cccccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCC
Confidence 55667789999999996654332222222257788999999999999999999999999999988877776422222 2
Q ss_pred CCCcccc-cccccceeccccCCCCCCccccceeeee--cC-----cchh-----HHHHhHhhh-----------------
Q psy8139 790 AAPSFIR-ALHDTTALEDEKPRNTNNCDYESKRTFQ--ST-----SPML-----AAFMLLMLF----------------- 839 (1101)
Q Consensus 790 ~~p~~~~-~~~~s~~~~~w~p~~~~~~~~~~~~~~~--~~-----~~~~-----~~~~v~~~~----------------- 839 (1101)
.+|..+. ......+++.|.||..++-.+..|...+ +. +++. ..|.+-.+.
T Consensus 721 ~~ps~l~~~~g~~si~vsW~Pp~~~~~~vrgY~ig~r~g~~~p~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gd 800 (1381)
T KOG4221|consen 721 GKPSELHVHPGSNSIVVSWTPPPHPNIVVRGYKIGYRPGSGIPDTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGD 800 (1381)
T ss_pred CCCceeeeccCceeEEEEeCCCCChhhhhcceEEeeecccCCCCCccEEecceeeEEEEEecccCceEEEEEEEeccCCC
Confidence 3444333 5566778889998887744333332222 10 0111 000000011
Q ss_pred ----------------------------------------------------ceeeEEeeeeccCCCCCCceeeeecccc
Q psy8139 840 ----------------------------------------------------TFIETISSFRDKYVDNEDDYDIVETNEH 867 (1101)
Q Consensus 840 ----------------------------------------------------~~~~Y~v~~r~~~~~~~~~~~~v~~~~~ 867 (1101)
+...|.|.|...+....-... ..
T Consensus 801 G~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S~tsI~v~w~~~~~~t~~~~~yTVr~~~~gi~~~~~~~-----~~ 875 (1381)
T KOG4221|consen 801 GNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALSSTSIRVTWADNKDQTTDNRIYTVRWSLTGIRNGTLYR-----YD 875 (1381)
T ss_pred CcceeeeeeeccCCCcCCcCCCCCCCcccccccccccceEEEEEecCCCccccceEEEEEEeecccccceeEE-----Ee
Confidence 233444444432222210000 01
Q ss_pred ccCCCCCCCCCccCcccce--eecc--ccccc--CceeecccCCCCccCCCCCChhhhhhhhhhhccc---cccccccch
Q psy8139 868 TGTGAPSDNENESDYFPEK--TIDE--SVYGY--DTIVYGYDSDDLDRHYPTLDEEEEEEDRESLVKD---RESSVKGKE 938 (1101)
Q Consensus 868 ~~~~~~~~l~~~~~~t~Y~--V~a~--n~~G~--~~~v~~~t~e~~P~~~P~~v~~~~~~~n~t~v~v---p~~~~nG~i 938 (1101)
.-+++.....++++++.|+ |.+. |..+. +..+...|.+.+|..||.++++.... +.+++.| ||...||.|
T Consensus 876 ~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~tle~~P~sPP~d~tv~p~e-~P~~v~v~WqPp~e~nG~I 954 (1381)
T KOG4221|consen 876 NSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENRTLELVPSSPPRDLTVQPDE-KPTTVIVHWQPPTEPNGEI 954 (1381)
T ss_pred cccccceeccCcCcCChhhhhhhhhhccCcCCcccceeeeeecccCCCCCChhceecccC-CCCccccccCCCcCCCCce
Confidence 2233445566667999999 3332 33333 99999999999999999999999885 4455555 899999999
Q ss_pred hhcccccchhhhhhcccccccccccccC--CceeEeecCCCCCCCceeec-eeeechhh
Q psy8139 939 EEAKVIKDDEYYENLGDVLTKKYSLPVN--SDIQIKIDKPDDEPDYVIKG-KYEVDNEM 994 (1101)
Q Consensus 939 ~gY~I~~~~~~y~~~~~~~~~~~~l~~~--~~~~~~i~~~~~~~~~~~~~-~~~~~~~~ 994 (1101)
++|.| ||..++......|..-.- ......|.+|.+++-|.|++ +-.+++.+
T Consensus 955 ~~Yii-----~Ys~~~n~~~~dWt~~t~~g~~L~~~v~~l~p~t~yffkiQAr~~kG~g 1008 (1381)
T KOG4221|consen 955 TEYII-----YYSTDGNTPEHDWTIETTAGAELSHQVPNLDPDTGYFFKIQARNEKGPG 1008 (1381)
T ss_pred eeEEE-----EEecCCCCchhhceeeecccchhhhccCCCCCCCceEEEEEeeccCCCC
Confidence 99999 999999999988876553 45578999999999999999 77777776
No 4
>KOG3513|consensus
Probab=100.00 E-value=2.3e-41 Score=395.36 Aligned_cols=589 Identities=21% Similarity=0.250 Sum_probs=417.0
Q ss_pred hhhhhhhhccc-ccCcceEEEeeecccccccccceeeeccCCCCCC-----------CCCcccCCCCCCCCCeeEEEEeC
Q psy8139 304 KQAKKTADNQF-ENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPP-----------GKPQLLPDSPSLDRDVFTIRWEP 371 (1101)
Q Consensus 304 ~~~~l~i~~~~-~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P-----------~~p~~l~~~~~~~~~sv~l~W~~ 371 (1101)
..+.|.|.+.. ..|.|.|+|+|+|..|...+.++.+.....+..+ +.+..|.|....+-..+++.|.-
T Consensus 94 ~~G~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~ 173 (1051)
T KOG3513|consen 94 LGGTLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWML 173 (1051)
T ss_pred ecCceEecCCcchhhcceeEEEeecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehh
Confidence 37889999988 8999999999999999999988776665444333 34445555554554456666643
Q ss_pred CCCCC---------------------------------------------------------------------------
Q psy8139 372 PEYDG--------------------------------------------------------------------------- 376 (1101)
Q Consensus 372 p~~~g--------------------------------------------------------------------------- 376 (1101)
.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a 253 (1051)
T KOG3513|consen 174 NEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETA 253 (1051)
T ss_pred ccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccc
Confidence 21100
Q ss_pred ---CcCeeEEEEEEEecCCCceEEcCccccc--------cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEe
Q psy8139 377 ---GSPVLGYLVEHRRTGSPYWVRASPHMVE--------DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445 (1101)
Q Consensus 377 ---~~~i~~Y~v~~~~~~~~~w~~~~~~~~~--------~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~ 445 (1101)
....+.|.-...+.....|.+++..+.. ...|.|.+++.+|+|.|+|.|.|..|... ....+.+
T Consensus 254 ~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~-----~~~~v~v 328 (1051)
T KOG3513|consen 254 LKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSAT-----HSGHVTV 328 (1051)
T ss_pred cCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccce-----eeEEEEE
Confidence 0000001111111122246665542222 34599999999999999999999999543 2244444
Q ss_pred ccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCc---EEEEecCCeeEEEEeecCCCCCEE
Q psy8139 446 QRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRR---QRIVTDNDISTLIIHQAALMDEGE 522 (1101)
Q Consensus 446 ~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~---~~~~~~~~~~~l~I~~l~~~d~g~ 522 (1101)
. .+|.|+..+.+..+..|++++|.|.+.|.|.|.++|++||.++....+ +.+. .+ +|.|.+|+..|+|.
T Consensus 329 ~----a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~--~g--~L~is~v~~~dsg~ 400 (1051)
T KOG3513|consen 329 Y----APPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKID--DG--TLIISNVQESDSGV 400 (1051)
T ss_pred e----cCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEe--CC--EEEEEecccccCeE
Confidence 3 889999999999999999999999999999999999999999986554 4432 33 89999999999999
Q ss_pred EEEEEEeCCCceEEEEEEeeccC-CccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeec
Q psy8139 523 IKCTATNRAGHSITKARLRLEAP-PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD 601 (1101)
Q Consensus 523 Y~C~a~n~~g~~~~s~~l~V~~~-p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~ 601 (1101)
|+|.|.|..|...+++.|.|... |.+...+. .....+..|..+.+.|...+.|.+.++|.+++..+..++++.+..
T Consensus 401 YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~-~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~e-- 477 (1051)
T KOG3513|consen 401 YQCIAENKYGTIYANAELKVLASAPVFPLNPV-ERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILE-- 477 (1051)
T ss_pred EEeeeecccceEeeeeEEEEEccCCCCCCCcc-ceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECC--
Confidence 99999999999999999999885 77765543 234567789999999999999999999999988777778888765
Q ss_pred ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCC---CCCccEEEEecCCeEEEEeecCCCCCCcccceeEE
Q psy8139 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPL---PPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIV 678 (1101)
Q Consensus 602 ~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~---~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v 678 (1101)
+++|.|.+++.+|.|.|+|.|.|..|.......|.|.+++. +|.+. ....+.+++|.|+.-.++
T Consensus 478 -dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~--~v~~g~~v~l~Ce~shD~---------- 544 (1051)
T KOG3513|consen 478 -DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNT--DVKVGESVTLTCEASHDP---------- 544 (1051)
T ss_pred -CCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchh--hhccCceEEEEeecccCC----------
Confidence 77899999999999999999999999999999999998763 44332 234577999999964322
Q ss_pred EEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEc--CCCCCc
Q psy8139 679 EYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS--GLEPGW 756 (1101)
Q Consensus 679 ~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~--~L~p~t 756 (1101)
.-.+++.|... |..+...+.++ ....... .+...++|. .|.+.-
T Consensus 545 ----------------------~ld~~f~W~~n---------G~~id~~~~~~-~~~~~~~--~~~g~L~i~nv~l~~~G 590 (1051)
T KOG3513|consen 545 ----------------------SLDITFTWKKN---------GRPIDFNPDGD-HFEINDG--SDSGRLTIANVSLEDSG 590 (1051)
T ss_pred ----------------------CcceEEEEEEC---------CEEhhccCCCC-ceEEeCC--cCccceEEEeeccccCc
Confidence 23467788742 22222222222 1111111 111344444 456666
Q ss_pred eEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc--cccccceeccccCCCCCCccccceeeeecCcchhHHHH
Q psy8139 757 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR--ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFM 834 (1101)
Q Consensus 757 ~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~--~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1101)
.|.+.+.. .+.+-.+... .+ + ..||.||..+. ....+++.+.|.|.. +.++|+.
T Consensus 591 ~Y~C~aqT---~~Ds~s~~A~-l~-V---~gpPgpP~~v~~~~i~~t~~~lsW~~g~------------dn~SpI~---- 646 (1051)
T KOG3513|consen 591 KYTCVAQT---ALDSASARAD-LL-V---RGPPGPPPDVHVDDISDTTARLSWSPGS------------DNNSPIE---- 646 (1051)
T ss_pred eEEEEEEE---eecchhcccc-eE-E---ecCCCCCCceeEeeeccceEEEEeecCC------------CCCCCce----
Confidence 66665554 3332222222 22 2 35666666554 678888999998843 4446777
Q ss_pred hHhhhceeeEEeeeeccCCCCCCceeeeeccccccCCCCCCCCCccCcccce--eeccccccc----CceeecccCCCCc
Q psy8139 835 LLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNENESDYFPEK--TIDESVYGY----DTIVYGYDSDDLD 908 (1101)
Q Consensus 835 v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~----~~~v~~~t~e~~P 908 (1101)
.|.+.++.. ....|...........+. .+.+..+|.||+.|+ |.|.|++|. .......|.|++|
T Consensus 647 --------~Y~iq~rt~-~~~~W~~v~~vp~~~~~~-~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P 716 (1051)
T KOG3513|consen 647 --------KYTIQFRTP-FPGKWKAVTTVPGNITGD-ESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAP 716 (1051)
T ss_pred --------EEeEEecCC-CCCcceEeeECCCcccCc-cceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCC
Confidence 888888777 466687765322222222 234466677999999 999999998 5556788999999
Q ss_pred cCCCCCChhhhhhhhhhhccc---cccccccchhhcccccchhhhhhcccc-cccccccccC--CceeEeecCCCCCCCc
Q psy8139 909 RHYPTLDEEEEEEDRESLVKD---RESSVKGKEEEAKVIKDDEYYENLGDV-LTKKYSLPVN--SDIQIKIDKPDDEPDY 982 (1101)
Q Consensus 909 ~~~P~~v~~~~~~~n~t~v~v---p~~~~nG~i~gY~I~~~~~~y~~~~~~-~~~~~~l~~~--~~~~~~i~~~~~~~~~ 982 (1101)
..+|.||.......+...|+| |+...||.-.||+| .|+..+.. ..++-.+... +.+.+......+.+.|
T Consensus 717 ~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~V-----swr~~g~~~~W~~~~v~~~d~~~~V~~~~st~~~tpy 791 (1051)
T KOG3513|consen 717 SVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRV-----SWRPQGADKEWKEVIVSNQDQPRYVVSNESTEPFTPY 791 (1051)
T ss_pred ccCCccccccCCCCceEEEEeccCCHHHccCCCceEEE-----EEEeCCCCcccceeEecccCCceEEEcCCCCCCccee
Confidence 999999999988666777777 58889999999999 99998887 5555444443 5556666666678888
Q ss_pred eeec-eeeechhh
Q psy8139 983 VIKG-KYEVDNEM 994 (1101)
Q Consensus 983 ~~~~-~~~~~~~~ 994 (1101)
.||. .+--.+++
T Consensus 792 evKVqa~N~~GeG 804 (1051)
T KOG3513|consen 792 EVKVQAINDQGEG 804 (1051)
T ss_pred EEEEEEecCCCCC
Confidence 8877 44444444
No 5
>KOG4222|consensus
Probab=100.00 E-value=1.8e-37 Score=356.71 Aligned_cols=599 Identities=21% Similarity=0.237 Sum_probs=409.2
Q ss_pred hhhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcc----------cCCCCCCCCCeeEEEEeCCC
Q psy8139 304 KQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQL----------LPDSPSLDRDVFTIRWEPPE 373 (1101)
Q Consensus 304 ~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~----------l~~~~~~~~~sv~l~W~~p~ 373 (1101)
.+|+|.|.|+...|+|.|.|++.|..|..++....+++..+|..-..|.+ +.|. ..+..--+|.|...
T Consensus 185 sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~-v~GdP~P~Vrwkk~- 262 (1281)
T KOG4222|consen 185 SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCR-VGGDPQPTVRWKKD- 262 (1281)
T ss_pred cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccc-cCCCCCCceeeecc-
Confidence 67999999999999999999999999999999999999998876555554 2333 33444455555552
Q ss_pred CCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCC
Q psy8139 374 YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 453 (1101)
Q Consensus 374 ~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P 453 (1101)
++..+...|.|.. +..++.|...+|+|+|.|.|.|.|..|.-+++ ..++|. .+|
T Consensus 263 -~~~~P~~ry~i~~----------------d~qtl~i~r~tp~deg~y~C~a~n~vG~l~as---a~ltV~------apP 316 (1281)
T KOG4222|consen 263 -DPSLPRSRYSILD----------------DTQTLRIDRVTPTDEGTYVCPAENLVGGLEAS---ATLTVQ------APP 316 (1281)
T ss_pred -CCCCCccceeeee----------------ccccccccccCCCcccceeeeccccccccccc---cceEEe------cCc
Confidence 3444555555532 22578899999999999999999999987655 445553 789
Q ss_pred eeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEee--------cCCcEEEEecCCeeEEEEeecCCCCCEEEEE
Q psy8139 454 SFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF--------SSRRQRIVTDNDISTLIIHQAALMDEGEIKC 525 (1101)
Q Consensus 454 ~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~--------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C 525 (1101)
.|...|.+..+..|..++|.|.+.|+|.|.+.|.+.|.... ...+..+...+ +|+|.++...|.|.|.|
T Consensus 317 ~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvc 393 (1281)
T KOG4222|consen 317 SFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVC 393 (1281)
T ss_pred ccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCC---CcccccccccccceEee
Confidence 99999999999999999999999999999999999765322 12233333222 89999999999999999
Q ss_pred EEEeCCCceEEEEEEeecc-------CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEE
Q psy8139 526 TATNRAGHSITKARLRLEA-------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598 (1101)
Q Consensus 526 ~a~n~~g~~~~s~~l~V~~-------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~ 598 (1101)
...+..|.....+.+.+.. +|.+...+ .+.+...+....+.|.+.+.|.+.+.|.++|..+.........
T Consensus 394 q~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~---~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~ 470 (1281)
T KOG4222|consen 394 QTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGP---ANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQ 470 (1281)
T ss_pred cccccccccccceeEEEEeeeccCCCCceeeecc---cccccccCcccccChhhhCCCCCCchhhhcccccccCCcccce
Confidence 9999888876655444432 22222222 2335556888999999999999999999998887643322111
Q ss_pred eecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEE
Q psy8139 599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIV 678 (1101)
Q Consensus 599 ~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v 678 (1101)
....++.|.++...|.|.|+|.|.+..|....++.+.|.+.-.. ..+.. ..+...
T Consensus 471 --~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s-~q~~r--------------~~D~S~-------- 525 (1281)
T KOG4222|consen 471 --QEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSS-QQFCR--------------CEDPSA-------- 525 (1281)
T ss_pred --eeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcc-ccccc--------------CCChhh--------
Confidence 12578999999999999999999999999999999998754332 11100 011111
Q ss_pred EEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEE-eCCCCCceeecccccCccEEEEcCCCCCce
Q psy8139 679 EYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHR-RTGSPYWVRASPHMVEDTELMVSGLEPGWR 757 (1101)
Q Consensus 679 ~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~-~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~ 757 (1101)
.+++|+.|..+ +++.++++|+|.++...+..|+++|++++. ..-...|...... ...+.+.|.+|.|++.
T Consensus 526 ----~pS~p~~p~v~----~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~-v~~t~~~I~gL~P~~s 596 (1281)
T KOG4222|consen 526 ----LPSPPGTPGVV----NVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGR-VKTTTYAIRGLKPNLS 596 (1281)
T ss_pred ----CCCCCCCCccc----cCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccc-cccceeeecCcCccce
Confidence 12334444333 467778888888766667788888988865 4445678776654 6778999999999999
Q ss_pred EEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccccccccc-eeccccCC------CCCCccccceeeeecCcchh
Q psy8139 758 YQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT-ALEDEKPR------NTNNCDYESKRTFQSTSPML 830 (1101)
Q Consensus 758 Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~~~~~s~-~~~~w~p~------~~~~~~~~~~~~~~~~~~~~ 830 (1101)
|.|.|+|.|..|.|.||..+..+.+...+...+-........+.+ .++-|..+ ...++|.... .....-+.
T Consensus 597 ylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~k--q~~~~~i~ 674 (1281)
T KOG4222|consen 597 YLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDK--QHGSQYIQ 674 (1281)
T ss_pred eeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeec--ccCccccc
Confidence 999999999999999998888776542222211111111111111 22222211 1122222111 01122233
Q ss_pred HHHHhHhhhceeeEEeeeeccCC-CCCCceeeeeccccccCCCCCCCCCccCcccce--eecccccc-----c-Cceeec
Q psy8139 831 AAFMLLMLFTFIETISSFRDKYV-DNEDDYDIVETNEHTGTGAPSDNENESDYFPEK--TIDESVYG-----Y-DTIVYG 901 (1101)
Q Consensus 831 ~~~~v~~~~~~~~Y~v~~r~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G-----~-~~~v~~ 901 (1101)
+|.|.||.... ..+|....+.. -+.....+.++.+++.|+ +..+-..| . +.....
T Consensus 675 ------------g~~I~~r~~~~~~a~~s~~~v~~----~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~a 738 (1281)
T KOG4222|consen 675 ------------GYRISYRSLGSQLAQWSNAGVTV----PTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTA 738 (1281)
T ss_pred ------------ceEEEeccCccccccccccceec----cCCcceeccccCCCccceeeccCccCCCcceecCCcccccc
Confidence 89999999887 44576665522 122234455566999999 55555433 3 788889
Q ss_pred ccCCCCccCCCCCC---hhhhhhhhhhhccc-----cccccccchhhcccccchhhhhhcccccccccccccCCceeEee
Q psy8139 902 YDSDDLDRHYPTLD---EEEEEEDRESLVKD-----RESSVKGKEEEAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKI 973 (1101)
Q Consensus 902 ~t~e~~P~~~P~~v---~~~~~~~n~t~v~v-----p~~~~nG~i~gY~I~~~~~~y~~~~~~~~~~~~l~~~~~~~~~i 973 (1101)
.|.+.+|+.+|.++ +.... |.|++.| |.+..||++.||+| +.-..+....+-+..++ .....++|
T Consensus 739 lt~e~~PSapp~~~~~~s~~~~--n~Ta~~Vsw~~pp~d~~ng~~qg~ki----~~~~~e~tr~h~n~t~~-a~~~sv~i 811 (1281)
T KOG4222|consen 739 LTLEEPPSAPPQGVQHVSKGSY--NGTAGSVSWAPPPADVQNGILQGYKI----ECSGGEKTRIHINKTTN-ARTGSVTI 811 (1281)
T ss_pred cccccCCCCCCCCccccccccC--CCceeeEEecCCcccccCCcccceeE----EeecCcccccccccccc-CCCCceEe
Confidence 99999999999995 44444 6666666 46667999999999 11111112333333344 45557899
Q ss_pred cCCCCCCCceeec-eeeechhhh
Q psy8139 974 DKPDDEPDYVIKG-KYEVDNEML 995 (1101)
Q Consensus 974 ~~~~~~~~~~~~~-~~~~~~~~~ 995 (1101)
.++..|.-|.+.. ..+--++++
T Consensus 812 ~~l~~g~ay~vtv~a~T~aGvG~ 834 (1281)
T KOG4222|consen 812 GNLVTGIAYSVTVAARTGAGVGV 834 (1281)
T ss_pred ccccccceEEEEEeeecCCccCC
Confidence 9999998888776 444445555
No 6
>KOG4222|consensus
Probab=99.95 E-value=3.9e-27 Score=271.93 Aligned_cols=554 Identities=20% Similarity=0.235 Sum_probs=346.9
Q ss_pred cCcceEEEeeecccccccccceeeeccCCCC-CCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCc
Q psy8139 316 NQAPLYVRLEEAITGLNVGTDLYCVIKKPPG-PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY 394 (1101)
Q Consensus 316 ~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~-~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~ 394 (1101)
.|.|.|+|++.|..|.+++-...+.++..+. .=..|..+ .......+.+.+.+|. |. +. =.|.|..++...
T Consensus 102 ~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~---~~a~ge~avlEcgpP~--gh-pe--ptvSw~Kdg~pl 173 (1281)
T KOG4222|consen 102 HDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDV---QAAVGEEAVLECGPPR--GH-PE--PTVSWVKDGKPL 173 (1281)
T ss_pred CCCceeEeeecCccceeeecCceEEEEEechhcccCcccc---cccccceeEEeccCCC--CC-CC--CcceeecCCCcc
Confidence 3999999999999999999766555543322 22222222 1233455555555552 11 11 112333333333
Q ss_pred eEEc--CccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEE
Q psy8139 395 WVRA--SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEF 472 (1101)
Q Consensus 395 w~~~--~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L 472 (1101)
|... .....+.+.|.|.++...|+|.|.|+|.|.+|.-+.. ...+.+ ..+|.|...|.+..+..|..+.|
T Consensus 174 ~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~----~A~lsv----~e~P~f~~rp~~~~v~~g~~~~f 245 (1281)
T KOG4222|consen 174 DHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESI----PARLSV----QEKPWFWKRPKDLAVLVGAAAEF 245 (1281)
T ss_pred ccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccc----cceeee----ccCCccccccccceeeccccccc
Confidence 3111 1233577899999999999999999999999987643 334443 37899999999999999999999
Q ss_pred EEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCC
Q psy8139 473 TVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPK 552 (1101)
Q Consensus 473 ~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~ 552 (1101)
.|.+.|.|.|.+.|.+.+..+.. .++.+..... +|.|..+++.|+|.|.|.+.|..|....++.++|..+|.+...+
T Consensus 246 ~c~v~GdP~P~Vrwkk~~~~~P~-~ry~i~~d~q--tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp 322 (1281)
T KOG4222|consen 246 DCRVGGDPQPTVRWKKDDPSLPR-SRYSILDDTQ--TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKP 322 (1281)
T ss_pred ccccCCCCCCceeeeccCCCCCc-cceeeeeccc--cccccccCCCcccceeeeccccccccccccceEEecCccccccc
Confidence 99999999999999996665543 3455544422 89999999999999999999999999999999999999998776
Q ss_pred CCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecC--------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEE
Q psy8139 553 QYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT--------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624 (1101)
Q Consensus 553 ~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~--------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~ 624 (1101)
... .+..|..++|.|.+.|.|.|.+.|.+.|...- ...+..+.. ..+|+|+++...|.|.|.|...
T Consensus 323 ~dq---~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~---~g~L~it~v~~~d~g~Yvcq~~ 396 (1281)
T KOG4222|consen 323 RDQ---KVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSP---TGTLTITNVRQSDEGYYVCQTQ 396 (1281)
T ss_pred Ccc---ccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecC---CCCcccccccccccceEeeccc
Confidence 543 67779999999999999999999998764321 122333333 3489999999999999999999
Q ss_pred eCCCCceeEEEEEEecC---CCCCCccEEEE-----ecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCC
Q psy8139 625 NSLGEDVASFLVTVTDR---PLPPGKAKVVM-----TLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDS 696 (1101)
Q Consensus 625 N~~G~~~~s~~l~v~~~---P~~P~~~~~~~-----~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~ 696 (1101)
|..|.+.....+.+++. -.||..+..-. ..+..+.+.|..
T Consensus 397 ~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~a-------------------------------- 444 (1281)
T KOG4222|consen 397 TSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSA-------------------------------- 444 (1281)
T ss_pred ccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhh--------------------------------
Confidence 99998766555544422 12221111000 002222222221
Q ss_pred CCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCC
Q psy8139 697 PSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL 776 (1101)
Q Consensus 697 ~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~ 776 (1101)
.......+.|-.. +..|.-.... . ..-...++++.+|.-...|.|.|.|.+..|++.+|.
T Consensus 445 --tg~P~p~i~wl~d---------g~~v~~~d~~------~--s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSa- 504 (1281)
T KOG4222|consen 445 --TGAPTPNISWLKD---------GCNVMNPDSR------I--SQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSA- 504 (1281)
T ss_pred --hCCCCCCchhhhc---------ccccccCCcc------c--ceeeeceeeeeeeecCCCcceeeeccCcccccccce-
Confidence 1222334455421 1111111000 0 002235678888999999999999999999966653
Q ss_pred CCcEEecCCC---------C------CCCCCcccccccccceeccccCCCCCCccccceeeeecCcchhHHHHhHhhhce
Q psy8139 777 SEPLTVTYQR---------S------PAAAPSFIRALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTF 841 (1101)
Q Consensus 777 s~~~t~~~~~---------~------P~~~p~~~~~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 841 (1101)
..++.... + |+..|..+ .+..+.+.+.|.+... ...+|++
T Consensus 505 --tl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~-~v~~~~v~LsW~~~s~-----------sg~vP~s----------- 559 (1281)
T KOG4222|consen 505 --TLTVEKAGSSQQFCRCEDPSALPSPPGTPGVV-NVSRTSVTLSWQPTSP-----------SGAVPAS----------- 559 (1281)
T ss_pred --eeEhhhcCcccccccCCChhhCCCCCCCCccc-cCCCceEEecccCCCC-----------CCccccc-----------
Confidence 33332111 1 11112111 3344556677765322 3345555
Q ss_pred eeEEeeeeccCCCCCCcee--eeeccccccCCCCCCCCCccCcccce--eeccccccc--Cce--eecccCCCCccCCC-
Q psy8139 842 IETISSFRDKYVDNEDDYD--IVETNEHTGTGAPSDNENESDYFPEK--TIDESVYGY--DTI--VYGYDSDDLDRHYP- 912 (1101)
Q Consensus 842 ~~Y~v~~r~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~--~~~--v~~~t~e~~P~~~P- 912 (1101)
.|++.+-..+..+.|... .+....+.+.++. +.+.|. |+|.|..|. |.. -.+.|.+..+..+=
T Consensus 560 -~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~-------P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~a 631 (1281)
T KOG4222|consen 560 -GYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLK-------PNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGA 631 (1281)
T ss_pred -hhHHHHhhhhhcccccccccccccceeeecCcC-------ccceeeeeeeccccccccCCcccCCccccCCCChhhhhh
Confidence 566655455555566543 2323444555555 999999 999999997 221 22333333222211
Q ss_pred --------------CCChhhhhhhhhhhccc----cccccccchhhcccccchhhhhhcccccc--cccccccCCceeEe
Q psy8139 913 --------------TLDEEEEEEDRESLVKD----RESSVKGKEEEAKVIKDDEYYENLGDVLT--KKYSLPVNSDIQIK 972 (1101)
Q Consensus 913 --------------~~v~~~~~~~n~t~v~v----p~~~~nG~i~gY~I~~~~~~y~~~~~~~~--~~~~l~~~~~~~~~ 972 (1101)
.......+ |+++|.+ +...-.+.|.||+| .|+..+..+. ............+-
T Consensus 632 d~~k~~~~ls~~l~~l~~~~~L--~asslr~~w~~~kq~~~~~i~g~~I-----~~r~~~~~~a~~s~~~v~~~t~~s~v 704 (1281)
T KOG4222|consen 632 DHQKVQRELSNELLRLSNPNVL--NASSLRLGWTKDKQHGSQYIQGYRI-----SYRSLGSQLAQWSNAGVTVPTPESVV 704 (1281)
T ss_pred hHHHHHHhhcccceeecccccc--chhheeeeeeeecccCcccccceEE-----EeccCccccccccccceeccCCccee
Confidence 01122233 5666666 45445789999999 9999888222 11112223333556
Q ss_pred ecCCCCCCCceeec
Q psy8139 973 IDKPDDEPDYVIKG 986 (1101)
Q Consensus 973 i~~~~~~~~~~~~~ 986 (1101)
+.++.+++.|.|+-
T Consensus 705 ~~nl~p~t~ye~f~ 718 (1281)
T KOG4222|consen 705 VPNLKPGTNYEFFV 718 (1281)
T ss_pred ccccCCCccceeec
Confidence 77777777777765
No 7
>KOG4194|consensus
Probab=99.84 E-value=1.2e-19 Score=196.90 Aligned_cols=220 Identities=24% Similarity=0.391 Sum_probs=182.9
Q ss_pred ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEE
Q psy8139 406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVS 485 (1101)
Q Consensus 406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~ 485 (1101)
+.|.+.|++-+|+|.|+|++.|.+|...+. .+.+++ ...|.|...|.++++..|+.+.|.|.+.|.|.|.|.
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysq----k~KltV----~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIa 645 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQ----KAKLTV----NQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIA 645 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhh----eeEEEe----eccCccccCcccceeecccceeeeeeccCCCCccee
Confidence 468999999999999999999999976432 334443 367999999999999999999999999999999999
Q ss_pred EEECCEE-ee--cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEee
Q psy8139 486 WYKDGFE-IF--SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM 562 (1101)
Q Consensus 486 W~~~g~~-~~--~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~ 562 (1101)
|.++|.+ .+ ...+..+..+.. .+.|.|+.++|.|.|+|.|.|.+|.....+.|.|...|.+..|.. ...+..
T Consensus 646 wqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~---~~~V~~ 720 (873)
T KOG4194|consen 646 WQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLE---DQLVVV 720 (873)
T ss_pred ehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEecCCccccccc---ceEEEe
Confidence 9998875 33 234555555554 899999999999999999999999999999999999998877754 347889
Q ss_pred CCEEEEEEEEeecCC-CeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139 563 GEIIKLKVSMAGMPP-PTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~ 640 (1101)
|+++.+.|.+.|.|. |.+.|++.+.++....+..+ .+++.-+++.+....|.|.|+|...|..|.......+.+..
T Consensus 721 get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f--~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 721 GETLVLQCLAEGAPADPRLEWFKEDKPILITERHTF--PDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred cceEEEEEecCCCCCCccccccCCCCceEEeecccC--CCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence 999999999999987 99999999988865443332 33456678888888999999999999999877666665553
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.74 E-value=6.8e-16 Score=170.75 Aligned_cols=208 Identities=14% Similarity=0.224 Sum_probs=144.2
Q ss_pred ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEE-----EeccC
Q psy8139 406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQ-----VEGIP 480 (1101)
Q Consensus 406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~-----~~g~p 480 (1101)
..+.|.++...|+|.|+|.|.|..|....+ +.+++... .+|.+...+....+.+|..+.|.|. ..+.|
T Consensus 82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s-----~~L~V~~~--~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~ 154 (326)
T PHA02785 82 SNMLILNPTQSDSGIYICITKNETYCDMMS-----LNLTIVSV--SESNIDLISYPQIVNERSTGEMVCPNINAFIASNV 154 (326)
T ss_pred ceEEEcccCcccCeEEEEEEECCCcceEEE-----EEEEEEec--CCCccceeeccceecccCcEEEECCChhhcccCCC
Confidence 357899999999999999999988764322 33333221 2233322333445678999999996 34678
Q ss_pred CCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE----EEEeecc---CCccccCCC
Q psy8139 481 TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK----ARLRLEA---PPTIRLPKQ 553 (1101)
Q Consensus 481 ~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s----~~l~V~~---~p~~~~~~~ 553 (1101)
.+.++|+++.. + ...++.... + +.|.|.++...|+|.|+|.|.|..|..... ..|.|.. ||.+..
T Consensus 155 ~~~i~W~k~~~-~-~~~r~~~~~-~--~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~--- 226 (326)
T PHA02785 155 NADIIWSGHRR-L-RNKRLKQRT-P--GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQL--- 226 (326)
T ss_pred CceEEEccCCc-c-CCcceEecC-C--CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecC---
Confidence 89999987642 2 223333322 2 389999999999999999999988875432 3455542 332322
Q ss_pred CCCCeEEeeCCEEEEEEEEeecCC---CeeEEEECCeecCCC-----CceEEEee--------cceEEEEEccCCCCCCe
Q psy8139 554 YEDGLLFEMGEIIKLKVSMAGMPP---PTARWLHNGEPLTSG-----GRYEITHT--------DRYLNLRISDARRADRG 617 (1101)
Q Consensus 554 ~~~~~~v~~g~~~~l~c~~~g~p~---~~v~W~~~g~~l~~~-----~~~~~~~~--------~~~~sl~i~~l~~~~~y 617 (1101)
+....+..|+.+.|.|.+.|.|. +.+.|.+||..+... .++..... ...+.|.|.+++..|.|
T Consensus 227 -p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G 305 (326)
T PHA02785 227 -PEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDAT 305 (326)
T ss_pred -CCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCe
Confidence 23456677999999999999886 489999999988532 12222110 01467999999999999
Q ss_pred EEEEEEEeCCCC
Q psy8139 618 EYQAHGVNSLGE 629 (1101)
Q Consensus 618 ~y~c~A~N~~G~ 629 (1101)
.|+|.|.|..|.
T Consensus 306 ~Y~C~A~n~~~~ 317 (326)
T PHA02785 306 TFTCMAFTIPSI 317 (326)
T ss_pred eeEEEEEeccCc
Confidence 999999998754
No 9
>KOG4194|consensus
Probab=99.67 E-value=2.5e-15 Score=163.71 Aligned_cols=213 Identities=19% Similarity=0.328 Sum_probs=164.0
Q ss_pred CCCCeeeecCceeEEccCCeEEEEEEEec--cCCCeEEEEECCEEeec-----CCcEEEEe-c-------CCeeEEEEee
Q psy8139 450 AAAPSFIRALHDTTALEDEKVEFTVQVEG--IPTPKVSWYKDGFEIFS-----SRRQRIVT-D-------NDISTLIIHQ 514 (1101)
Q Consensus 450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g--~p~~~v~W~~~g~~~~~-----~~~~~~~~-~-------~~~~~l~I~~ 514 (1101)
...|.+...|..+....|..++|+|.+.+ ..+..+.|.+++..... ...+.... . ...+.|.+.|
T Consensus 501 spkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n 580 (873)
T KOG4194|consen 501 SPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN 580 (873)
T ss_pred CCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence 56788899999999999999999999876 44558999997653221 11111111 0 1134799999
Q ss_pred cCCCCCEEEEEEEEeCCCceEE-EEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCee-cCCC
Q psy8139 515 AALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEP-LTSG 592 (1101)
Q Consensus 515 l~~~d~g~Y~C~a~n~~g~~~~-s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~-l~~~ 592 (1101)
++..|+|.|+|.+.|..|...+ .+.++|...|.+...|. .++...|....+.|.+.|.|.|.+.|.++|.+ .+..
T Consensus 581 Vt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~---dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA 657 (873)
T KOG4194|consen 581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPE---DLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAA 657 (873)
T ss_pred eecccCceEEEEEecccCcchhheeEEEeeccCccccCcc---cceeecccceeeeeeccCCCCcceeehhcCCCCCchh
Confidence 9999999999999999998766 68999999999986664 55888999999999999999999999998876 4332
Q ss_pred CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccE-EEEecCCeEEEEeecC
Q psy8139 593 GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAK-VVMTLGKSVTLSWSEP 665 (1101)
Q Consensus 593 ~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~-~~~~~~~sv~lsW~~p 665 (1101)
..-.+..-.....+.|.|+.++|.|.|+|.|.|.+|..+.++.++|.+.|.+-..+. -..+.+.++.|.|...
T Consensus 658 ~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~ 731 (873)
T KOG4194|consen 658 RERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAE 731 (873)
T ss_pred hhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecC
Confidence 222223333456789999999999999999999999999999999998875543332 2334567888999853
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.61 E-value=1.5e-13 Score=152.04 Aligned_cols=260 Identities=17% Similarity=0.184 Sum_probs=165.0
Q ss_pred EEccCCeEEEEEEE-----eccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE
Q psy8139 463 TALEDEKVEFTVQV-----EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK 537 (1101)
Q Consensus 463 ~v~~g~~v~L~C~~-----~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s 537 (1101)
.+.+|+++.|.|.+ .|.|.+.++|+++|.... +......+ ..|.|.++..+|+|.|+|.|.|..|....+
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g--~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s 111 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNG--SNMLILNPTQSDSGIYICITKNETYCDMMS 111 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCC--ceEEEcccCcccCeEEEEEEECCCcceEEE
Confidence 46679999999986 688999999999974321 11112122 258899999999999999999999888888
Q ss_pred EEEeeccCC--ccccCCCCCCCeEEeeCCEEEEEEEE-----eecCCCeeEEEECCeecCCCCceEEEeecceEEEEEcc
Q psy8139 538 ARLRLEAPP--TIRLPKQYEDGLLFEMGEIIKLKVSM-----AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISD 610 (1101)
Q Consensus 538 ~~l~V~~~p--~~~~~~~~~~~~~v~~g~~~~l~c~~-----~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~ 610 (1101)
+.|.|...+ .+... .....+..|....+.|.. .+.|.+.+.|++++. + ...++... ..+.|.|.+
T Consensus 112 ~~L~V~~~~~~~~~~~---~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~---~~~~L~i~~ 183 (326)
T PHA02785 112 LNLTIVSVSESNIDLI---SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR---TPGIITIED 183 (326)
T ss_pred EEEEEEecCCCcccee---eccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec---CCCeEEEee
Confidence 888876532 22211 112356678899999972 467889999987542 2 22333332 245799999
Q ss_pred CCCCCCeEEEEEEEeCCCCceeE----EEEEEecCCCCCC---ccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcC
Q psy8139 611 ARRADRGEYQAHGVNSLGEDVAS----FLVTVTDRPLPPG---KAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRP 683 (1101)
Q Consensus 611 l~~~~~y~y~c~A~N~~G~~~~s----~~l~v~~~P~~P~---~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~ 683 (1101)
++..|.|.|+|.|.|..|..... ..+.|..+..||. ...+....+.+++|.|.+...+.
T Consensus 184 v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~-------------- 249 (326)
T PHA02785 184 VRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPP-------------- 249 (326)
T ss_pred cChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCC--------------
Confidence 99999999999999998865432 3455544333331 11233345788999999753221
Q ss_pred CCCCCCCcccCCCCCCCCceEEEEeeCCCC--CCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEE
Q psy8139 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEY--DGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR 761 (1101)
Q Consensus 684 ~~~p~~p~~~~~~~~~~~~si~l~W~pP~~--~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 761 (1101)
+....+.|..... +...+...+.+...... +. ..........++|.++.......|.
T Consensus 250 -----------------~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~L~I~~V~~~D~G~Y~ 308 (326)
T PHA02785 250 -----------------TTDADVFWISNGMYYEEDDEDGDGRISVANKI---YT-TDKRRVITSRLNINPVKEEDATTFT 308 (326)
T ss_pred -----------------CCCceEEEEECCEECCCcCCCCceeEEEecCc---cc-cccceeeeEEEEECCcchhcCeeeE
Confidence 1123577865211 00001112222222110 00 0000012356899999999999999
Q ss_pred EEEEcCCcc
Q psy8139 762 ITAENVVGF 770 (1101)
Q Consensus 762 V~A~n~~G~ 770 (1101)
|.|.|..|.
T Consensus 309 C~A~n~~~~ 317 (326)
T PHA02785 309 CMAFTIPSI 317 (326)
T ss_pred EEEEeccCc
Confidence 999998864
No 11
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.54 E-value=3.7e-13 Score=139.15 Aligned_cols=159 Identities=19% Similarity=0.233 Sum_probs=118.5
Q ss_pred ceeEEccCCeEEEEEEEeccC-----------CCeEEEEECCEEee--c-CCc---EEEE-e--cCCeeEEEEeecCCCC
Q psy8139 460 HDTTALEDEKVEFTVQVEGIP-----------TPKVSWYKDGFEIF--S-SRR---QRIV-T--DNDISTLIIHQAALMD 519 (1101)
Q Consensus 460 ~~~~v~~g~~v~L~C~~~g~p-----------~~~v~W~~~g~~~~--~-~~~---~~~~-~--~~~~~~l~I~~l~~~d 519 (1101)
..+.+.+|+++.|.|.+.+.| .+.|.|++.+.... . +.+ ..+. . ......|.|.++...|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 456789999999999987644 45899999876421 1 111 0000 0 1112489999999999
Q ss_pred CEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEee-----cCCCeeEEEECCeecCCCCc
Q psy8139 520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG-----MPPPTARWLHNGEPLTSGGR 594 (1101)
Q Consensus 520 ~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g-----~p~~~v~W~~~g~~l~~~~~ 594 (1101)
+|.|+|.|.|..|....+..|.|..++ ....+..|..+.|.|.+.+ .|.|+++|+++|.++..+.+
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~---------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r 180 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSGT---------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR 180 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecCC---------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC
Confidence 999999999988887777888884322 1235678999999999863 45799999999999876666
Q ss_pred eEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139 595 YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 595 ~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~ 629 (1101)
+.+. .+...|.|.++...|+|.|+|.|....+.
T Consensus 181 ~~~~--~~~~~L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 181 IQLR--NNNSTLVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred EEEe--CCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence 5543 33568999999999999999999876443
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.42 E-value=2.5e-12 Score=114.92 Aligned_cols=96 Identities=21% Similarity=0.263 Sum_probs=87.2
Q ss_pred CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG 532 (1101)
Q Consensus 453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g 532 (1101)
|.|...|.++.+..|+.+.|.|.+.|.|.+.+.|+++|..+....++.+......+.|+|.++...|+|.|+|.|.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 56777889999999999999999999999999999999999877777777666778999999999999999999999999
Q ss_pred ceEEEEEEeeccCCcc
Q psy8139 533 HSITKARLRLEAPPTI 548 (1101)
Q Consensus 533 ~~~~s~~l~V~~~p~~ 548 (1101)
....++.|.|..+|..
T Consensus 81 ~~~~~~~l~V~~~P~p 96 (98)
T cd05762 81 SRQAQVNLTVVDKPDP 96 (98)
T ss_pred ceeEEEEEEEecCCCC
Confidence 9999999999987743
No 13
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.35 E-value=1.1e-11 Score=110.84 Aligned_cols=90 Identities=27% Similarity=0.477 Sum_probs=83.0
Q ss_pred CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139 556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL 635 (1101)
Q Consensus 556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~ 635 (1101)
....+..|+.+.|.|.+.|.|.+.+.|+++|.++..+.++.+......+.|+|.++...|.|.|+|.|.|..|....++.
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~ 87 (98)
T cd05762 8 EDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN 87 (98)
T ss_pred cCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence 35578899999999999999999999999999998777777777677889999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q psy8139 636 VTVTDRPLPP 645 (1101)
Q Consensus 636 l~v~~~P~~P 645 (1101)
|.|.+.|.||
T Consensus 88 l~V~~~P~pP 97 (98)
T cd05762 88 LTVVDKPDPP 97 (98)
T ss_pred EEEecCCCCC
Confidence 9999999988
No 14
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.27 E-value=2.8e-11 Score=105.97 Aligned_cols=88 Identities=24% Similarity=0.328 Sum_probs=75.3
Q ss_pred CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA 531 (1101)
Q Consensus 452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~ 531 (1101)
||.|...+.+..+..|+.+.|.|.+.|.|.|.++|++++..+....++ ...+ ..|.|.++...|+|.|+|.|.|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~~~--~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--SMSG--AVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--ecCC--CEEEECcCChhhCEEEEEEEEcCC
Confidence 577888899999999999999999999999999999998876544322 2233 389999999999999999999999
Q ss_pred CceEEEEEEeec
Q psy8139 532 GHSITKARLRLE 543 (1101)
Q Consensus 532 g~~~~s~~l~V~ 543 (1101)
|....++.|.|+
T Consensus 77 G~~~~~~~l~V~ 88 (88)
T cd05851 77 GKDKHQARVYVQ 88 (88)
T ss_pred CceEEEEEEEEC
Confidence 999888888763
No 15
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.26 E-value=7.1e-11 Score=104.78 Aligned_cols=90 Identities=28% Similarity=0.473 Sum_probs=79.6
Q ss_pred CCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR 530 (1101)
Q Consensus 451 ~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~ 530 (1101)
.||.|...|.++.+..|+.+.|.|.+.|.|.|.+.|+++|..+....++.+......+.|.|.++...|+|.|+|.|.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 46788888999999999999999999999999999999999887766777666655679999999999999999999999
Q ss_pred CCceEEEEEE
Q psy8139 531 AGHSITKARL 540 (1101)
Q Consensus 531 ~g~~~~s~~l 540 (1101)
.|....+..|
T Consensus 82 ~G~~~~~~~l 91 (92)
T cd05747 82 EGKQEAQFTL 91 (92)
T ss_pred CCCEeEEEEe
Confidence 9988776654
No 16
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.25 E-value=2e-10 Score=118.87 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=85.0
Q ss_pred cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEe-----cc
Q psy8139 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-----GI 479 (1101)
Q Consensus 405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~-----g~ 479 (1101)
+..|.|.+++..|+|.|.|.|.|..|... ..+.+.+.. .+.+..+..|+++.|.|.+. +.
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~-----~~i~L~V~~----------~~~~~~~~~G~~v~L~C~~~~~~~~~~ 161 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEE-----STIRLTFDS----------GTINYQFNSGKDSKLHCYGTDGISSTF 161 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceE-----EEEEEEEec----------CCccceEecCCCEEEEeeCCCCccccC
Confidence 46899999999999999999999776432 224444321 12245677899999999986 34
Q ss_pred CCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139 480 PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG 532 (1101)
Q Consensus 480 p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g 532 (1101)
|.|.++|+++|..+....++.+...+ ..|.|.++..+|+|.|+|.|....+
T Consensus 162 p~p~I~WyKng~~l~~~~r~~~~~~~--~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 162 KDYTLTWYKNGNIVLYTDRIQLRNNN--STLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred CCceEEEEECCEECCCCCCEEEeCCC--CEEEECcCCHHhCEEEEEEEEEeEC
Confidence 67899999999998766665544333 3899999999999999999998643
No 17
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.22 E-value=2.1e-10 Score=101.73 Aligned_cols=90 Identities=34% Similarity=0.604 Sum_probs=83.6
Q ss_pred CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG 532 (1101)
Q Consensus 453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g 532 (1101)
|.|...|.++.+..|+++.|.|.+.|.|.+.+.|++++..+..+.++.+...+....|.|.++...|+|.|+|.|.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 56788889999999999999999999999999999999999998888888888889999999999999999999999999
Q ss_pred ceEEEEEEee
Q psy8139 533 HSITKARLRL 542 (1101)
Q Consensus 533 ~~~~s~~l~V 542 (1101)
.....+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 8888887765
No 18
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.18 E-value=2.8e-10 Score=100.92 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=72.7
Q ss_pred cCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139 458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536 (1101)
Q Consensus 458 ~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~ 536 (1101)
.|..+.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++...|+|.|+|.|.|..|....
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 35567889999999999999999999999999999877766666544 44568999999999999999999999999887
Q ss_pred EEEEee
Q psy8139 537 KARLRL 542 (1101)
Q Consensus 537 s~~l~V 542 (1101)
...|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 776654
No 19
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.17 E-value=4.1e-10 Score=97.94 Aligned_cols=82 Identities=24% Similarity=0.432 Sum_probs=71.0
Q ss_pred eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR 539 (1101)
Q Consensus 461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~ 539 (1101)
.+.+..|+++.|.|.+.|.|.|.+.|++++.++... .++.+......+.|.|.++...|+|.|+|.|.|..|....+..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 456889999999999999999999999999988753 4566665556679999999999999999999999999888777
Q ss_pred Eee
Q psy8139 540 LRL 542 (1101)
Q Consensus 540 l~V 542 (1101)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 664
No 20
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.16 E-value=4.7e-10 Score=99.02 Aligned_cols=86 Identities=23% Similarity=0.413 Sum_probs=71.3
Q ss_pred ecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139 457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536 (1101)
Q Consensus 457 ~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~ 536 (1101)
..|.+..+..|+.+.|.|.+.|.|.|.+.|+++|..+................|.|.++...|.|.|+|.|.|..|....
T Consensus 5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~ 84 (90)
T cd04972 5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV 84 (90)
T ss_pred cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence 34566778999999999999999999999999998876544433333344568999999999999999999999999888
Q ss_pred EEEEee
Q psy8139 537 KARLRL 542 (1101)
Q Consensus 537 s~~l~V 542 (1101)
++.|.|
T Consensus 85 ~~~L~v 90 (90)
T cd04972 85 SVQVTV 90 (90)
T ss_pred EEEEeC
Confidence 877764
No 21
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.15 E-value=2.1e-10 Score=96.07 Aligned_cols=73 Identities=27% Similarity=0.427 Sum_probs=64.2
Q ss_pred CCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
|+++.|.|.+.|.|.|.++|++++..+....++.+...+ +|.|.++...|+|.|+|.|.|..|...+++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 678999999999999999999999887766666664433 7999999999999999999999999999888765
No 22
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.14 E-value=2.4e-10 Score=96.60 Aligned_cols=74 Identities=34% Similarity=0.633 Sum_probs=63.6
Q ss_pred cCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 466 ~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
+|+++.|.|.+.|.|.|.++|++++..+....+..+... +.|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 588999999999999999999999998876554444322 28999999999999999999999999988887765
No 23
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.14 E-value=3.2e-10 Score=95.26 Aligned_cols=73 Identities=29% Similarity=0.454 Sum_probs=62.0
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeec-CCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFS-SRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~-~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
+.|.|.+.|.|.|.|.|++++..+.. ..++.+... ++..+|.|.++...|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999999999999999999998864 345555544 33458999999999999999999999999999888875
No 24
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.13 E-value=4.6e-10 Score=100.39 Aligned_cols=84 Identities=18% Similarity=0.267 Sum_probs=70.1
Q ss_pred ceeEEccCCeEEEEEEEec-cCCCeEEEEECCEEeecCCcEEEEecC-----CeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139 460 HDTTALEDEKVEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRIVTDN-----DISTLIIHQAALMDEGEIKCTATNRAGH 533 (1101)
Q Consensus 460 ~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~-----~~~~l~I~~l~~~d~g~Y~C~a~n~~g~ 533 (1101)
..+.+..|+++.|.|.+.| .|+|.+.|+++|.++.......+...+ ..+.|.|..+..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4567889999999999999 999999999999998755443333221 2468999999999999999999999999
Q ss_pred eEEEEEEeec
Q psy8139 534 SITKARLRLE 543 (1101)
Q Consensus 534 ~~~s~~l~V~ 543 (1101)
....+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 8888888775
No 25
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.13 E-value=6.6e-10 Score=99.82 Aligned_cols=90 Identities=26% Similarity=0.499 Sum_probs=71.5
Q ss_pred CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEEC--CEEeec-----CCcEEEEecCCeeEEEEeecCCCCCEEEE
Q psy8139 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD--GFEIFS-----SRRQRIVTDNDISTLIIHQAALMDEGEIK 524 (1101)
Q Consensus 452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~--g~~~~~-----~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~ 524 (1101)
+|.+. .+.+..+.+|++++|.|.+.|.|.|.+.|+++ +..+.. ..++.+....+...|+|.++..+|+|.|+
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 45554 46788999999999999999999999999994 443321 23455444445568999999999999999
Q ss_pred EEEEeCCCceEEEEEEee
Q psy8139 525 CTATNRAGHSITKARLRL 542 (1101)
Q Consensus 525 C~a~n~~g~~~~s~~l~V 542 (1101)
|.|.|..|....++.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999999888877764
No 26
>KOG0196|consensus
Probab=99.12 E-value=5.6e-10 Score=126.94 Aligned_cols=145 Identities=26% Similarity=0.382 Sum_probs=106.2
Q ss_pred EEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEE-----------------------------------
Q psy8139 636 VTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY----------------------------------- 680 (1101)
Q Consensus 636 l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~----------------------------------- 680 (1101)
.-.+.+|++|.++... +.++++.|.|.+|.+.||-.-..|.|.+
T Consensus 326 mpCT~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~ 404 (996)
T KOG0196|consen 326 MPCTRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSD 404 (996)
T ss_pred CCCCCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEec
Confidence 4455788999998765 9999999999999999987666666655
Q ss_pred -----------EcCCCC----CCCCcc----------cCCC------CCCCCceEEEEeeCCCCCCCCCcceEEEEEEeC
Q psy8139 681 -----------FRPPGP----PGKPQL----------LPDS------PSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT 729 (1101)
Q Consensus 681 -----------~~~~~~----p~~p~~----------~~~~------~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~ 729 (1101)
..+.|. |.++.. .|++ ...+.++++|+|..|..++|. |..|.|.|.++
T Consensus 405 L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~-ildYEvky~ek 483 (996)
T KOG0196|consen 405 LLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGV-ILDYEVKYYEK 483 (996)
T ss_pred cccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCc-ceeEEEEEeec
Confidence 111111 111110 0100 145789999999999888776 99999999988
Q ss_pred CCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEec
Q psy8139 730 GSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783 (1101)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~ 783 (1101)
+.+...... .....++.+|.+|.|+|.|.|+|+|.+.+|.|++|....+.|.+
T Consensus 484 ~~~e~~~~~-~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~ 536 (996)
T KOG0196|consen 484 DEDERSYST-LKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLP 536 (996)
T ss_pred cccccceeE-EecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecC
Confidence 643222111 11567889999999999999999999999999999888887764
No 27
>KOG0196|consensus
Probab=99.12 E-value=1.6e-09 Score=123.45 Aligned_cols=189 Identities=19% Similarity=0.179 Sum_probs=125.4
Q ss_pred CCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCc--e------ee--cccccCccEEEEcCCCC
Q psy8139 685 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--V------RA--SPHMVEDTELMVSGLEP 754 (1101)
Q Consensus 685 ~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~--~------~~--~~~~~~~~~~~i~~L~p 754 (1101)
.||++|..+.. +++.+++.|.|.||...+|-+-..|.|.++.-....- . .. ......++++++.+|.|
T Consensus 330 ~PPSaP~nlis--~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~a 407 (996)
T KOG0196|consen 330 RPPSAPRNLIS--NVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLA 407 (996)
T ss_pred CCCCccceeee--ecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecccc
Confidence 45555555443 4899999999999999888888889998876542110 0 01 11224467889999999
Q ss_pred CceEEEEEEEEcCCcc-CCCCCCCCcEEec-CCCCCCCCCcccc-cccccceeccccCCCCCCccccceeeeecCcchhH
Q psy8139 755 GWRYQFRITAENVVGF-SEPGPLSEPLTVT-YQRSPAAAPSFIR-ALHDTTALEDEKPRNTNNCDYESKRTFQSTSPMLA 831 (1101)
Q Consensus 755 ~t~Y~~~V~A~n~~G~-g~~S~~s~~~t~~-~~~~P~~~p~~~~-~~~~s~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~ 831 (1101)
.+.|+|.|.|.|++-. ++.......+.++ .+.+|+..+.... .....++.+.|..|.. .++.++
T Consensus 408 h~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~------------png~il- 474 (996)
T KOG0196|consen 408 HTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQ------------PNGVIL- 474 (996)
T ss_pred ccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCC------------CCCcce-
Confidence 9999999999999743 4433333334343 3455555554443 5556667778865433 445566
Q ss_pred HHHhHhhhceeeEEeeeeccCCCCC-CceeeeeccccccCCCCCCCCCccCcccce--eeccccccc---CceeecccCC
Q psy8139 832 AFMLLMLFTFIETISSFRDKYVDNE-DDYDIVETNEHTGTGAPSDNENESDYFPEK--TIDESVYGY---DTIVYGYDSD 905 (1101)
Q Consensus 832 ~~~v~~~~~~~~Y~v~~r~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~~t~Y~--V~a~n~~G~---~~~v~~~t~e 905 (1101)
.|.|.|.++..+.. .....+..+..++.++. |.+.|. |+|.+..|. +......|.+
T Consensus 475 -----------dYEvky~ek~~~e~~~~~~~t~~~~~ti~gL~-------p~t~YvfqVRarT~aG~G~~S~~~~fqT~~ 536 (996)
T KOG0196|consen 475 -----------DYEVKYYEKDEDERSYSTLKTKTTTATITGLK-------PGTVYVFQVRARTAAGYGPYSGKHEFQTLP 536 (996)
T ss_pred -----------eEEEEEeeccccccceeEEecccceEEeeccC-------CCcEEEEEEEEecccCCCCCCCceeeeecC
Confidence 99999988875332 44444444566666666 999999 999998887 5555555554
Q ss_pred C
Q psy8139 906 D 906 (1101)
Q Consensus 906 ~ 906 (1101)
+
T Consensus 537 ~ 537 (996)
T KOG0196|consen 537 S 537 (996)
T ss_pred c
Confidence 3
No 28
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.11 E-value=7.3e-10 Score=97.44 Aligned_cols=87 Identities=25% Similarity=0.354 Sum_probs=72.3
Q ss_pred CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA 531 (1101)
Q Consensus 452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~ 531 (1101)
||.+...|.+..+..|+.+.|.|.+.|.|.|.++|++++..+....... .. ...|.|.++..+|+|.|+|.|.|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--~~--~~~L~i~~v~~~D~G~Y~C~a~N~~ 76 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--MS--GAVLKIPNIQFEDEGTYECEAENIK 76 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--Ee--CCEEEECCCCcccCEEEEEEEEECC
Confidence 3556667888889999999999999999999999999887665443322 12 2389999999999999999999999
Q ss_pred CceEEEEEEee
Q psy8139 532 GHSITKARLRL 542 (1101)
Q Consensus 532 g~~~~s~~l~V 542 (1101)
|....++.|.|
T Consensus 77 G~~~~~~~l~V 87 (88)
T cd04968 77 GKDTHQGRIYV 87 (88)
T ss_pred CcEEEEEEEEE
Confidence 99988888876
No 29
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.11 E-value=1.1e-09 Score=95.17 Aligned_cols=82 Identities=30% Similarity=0.547 Sum_probs=71.2
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC-CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL 635 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~ 635 (1101)
.+.+..|+++.|.|.+.|.|.|.+.|++++.++... .++.+......+.|.|.++.+.|+|.|+|.|.|..|....+..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 457888999999999999999999999999998753 4566666666789999999999999999999999999887776
Q ss_pred EEE
Q psy8139 636 VTV 638 (1101)
Q Consensus 636 l~v 638 (1101)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 654
No 30
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.11 E-value=5.6e-10 Score=97.23 Aligned_cols=84 Identities=26% Similarity=0.502 Sum_probs=72.0
Q ss_pred eeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139 455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS 534 (1101)
Q Consensus 455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~ 534 (1101)
|...|.+..+..|+++.|.|.+.|.|.|.+.|++++..+....++.. .++ .|.|.++...|+|.|+|.|.|..|..
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~--~~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV--EAG--DLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE--eCC--EEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 44567788999999999999999999999999999998876555443 233 79999999999999999999999998
Q ss_pred EEEEEEee
Q psy8139 535 ITKARLRL 542 (1101)
Q Consensus 535 ~~s~~l~V 542 (1101)
..++.|.|
T Consensus 78 ~~~~~l~V 85 (85)
T cd05728 78 YASAELAV 85 (85)
T ss_pred EEEEEEEC
Confidence 88887765
No 31
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.11 E-value=1.1e-09 Score=95.89 Aligned_cols=83 Identities=28% Similarity=0.506 Sum_probs=70.8
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCC-CceEEEee----cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHT----DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT 637 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~----~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~ 637 (1101)
|+.+.|.|.+.|.|.+.+.|.+++..+... .++.+... ...++|.|.++...|.|.|+|.|.|..|.......|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 678899999999999999999999888643 35544321 1236899999999999999999999999999999999
Q ss_pred EecCCCCC
Q psy8139 638 VTDRPLPP 645 (1101)
Q Consensus 638 v~~~P~~P 645 (1101)
|.++|.+|
T Consensus 81 V~~~P~~P 88 (88)
T cd05735 81 VQEPPDPP 88 (88)
T ss_pred EeCCCCCC
Confidence 99999887
No 32
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.09 E-value=1.3e-09 Score=97.65 Aligned_cols=91 Identities=23% Similarity=0.390 Sum_probs=71.4
Q ss_pred CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC-----CcEEEEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-----RRQRIVTDNDISTLIIHQAALMDEGEIKCT 526 (1101)
Q Consensus 452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-----~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~ 526 (1101)
.|.|...+....+..|+.++|.|.+.|.|.|.++|++++..+... .++.+......+.|.|.++...|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 355665565655666899999999999999999999988765432 223333334456899999999999999999
Q ss_pred EEeCCCceEEEEEEee
Q psy8139 527 ATNRAGHSITKARLRL 542 (1101)
Q Consensus 527 a~n~~g~~~~s~~l~V 542 (1101)
|.|..|....++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999988887765
No 33
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.07 E-value=1.1e-09 Score=97.91 Aligned_cols=83 Identities=30% Similarity=0.476 Sum_probs=69.5
Q ss_pred ceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538 (1101)
Q Consensus 460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~ 538 (1101)
.+..+..|+++.|.|.+.|.|.|.+.|+++|..+... ..+... ...+.|.|.++...|+|.|+|.|.|..|....++
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN--EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEI 88 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence 4567889999999999999999999999999988654 333332 2334799999999999999999999999998888
Q ss_pred EEeecc
Q psy8139 539 RLRLEA 544 (1101)
Q Consensus 539 ~l~V~~ 544 (1101)
.|.|..
T Consensus 89 ~L~V~~ 94 (95)
T cd05730 89 HLKVFA 94 (95)
T ss_pred EEEEEe
Confidence 888753
No 34
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.07 E-value=1.5e-09 Score=96.26 Aligned_cols=86 Identities=26% Similarity=0.397 Sum_probs=68.4
Q ss_pred ecCceeEEccCCeEEEEEEEeccCC-CeEEEEE-CCEEeec-CCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCC-
Q psy8139 457 RALHDTTALEDEKVEFTVQVEGIPT-PKVSWYK-DGFEIFS-SRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRA- 531 (1101)
Q Consensus 457 ~~p~~~~v~~g~~v~L~C~~~g~p~-~~v~W~~-~g~~~~~-~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~- 531 (1101)
..|.+..+..|+++.|.|.+.|.|. |.++|++ ++..+.. ..++.+... +..++|.|.++...|+|.|+|.|.|..
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 3466778999999999999999995 7999997 7766654 334444332 335689999999999999999999996
Q ss_pred CceEEEEEEee
Q psy8139 532 GHSITKARLRL 542 (1101)
Q Consensus 532 g~~~~s~~l~V 542 (1101)
|....++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 77877877765
No 35
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.07 E-value=1.3e-09 Score=92.17 Aligned_cols=74 Identities=32% Similarity=0.504 Sum_probs=65.2
Q ss_pred eEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 469 KVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 469 ~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
++.|.|.+.|.|.|.+.|+++|..+....++.+......+.|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 36899999999999999999999987666777766666779999999999999999999999999888877764
No 36
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.07 E-value=7.8e-10 Score=93.11 Aligned_cols=73 Identities=30% Similarity=0.470 Sum_probs=61.2
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEecC-CeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVTDN-DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~~-~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
+.|.|.+.|.|.|.|+|++++..+... .++.+...+ +...|.|.++.++|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 479999999999999999999988653 445554433 3347999999999999999999999999999888865
No 37
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.07 E-value=2.2e-09 Score=94.17 Aligned_cols=86 Identities=28% Similarity=0.415 Sum_probs=70.7
Q ss_pred eecCceeEEccCCeEEEEEEEeccCCCeEEEEE-CCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139 456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS 534 (1101)
Q Consensus 456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~ 534 (1101)
...|.++.+..|+++.|.|.+.|.|. .+.|++ ++..+....++.+...+....|+|.++..+|+|.|+|.|.|..|..
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 34567888999999999999999998 899998 5777766667777666666799999999999999999999999986
Q ss_pred E-EEEEEee
Q psy8139 535 I-TKARLRL 542 (1101)
Q Consensus 535 ~-~s~~l~V 542 (1101)
. .+..|.+
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 4 3444443
No 38
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.06 E-value=1.8e-09 Score=95.64 Aligned_cols=83 Identities=25% Similarity=0.483 Sum_probs=70.7
Q ss_pred CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEee-cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139 556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT-DRYLNLRISDARRADRGEYQAHGVNSLGEDVASF 634 (1101)
Q Consensus 556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~ 634 (1101)
..+.+.+|+++.|.|.+.|.|.|.+.|++++.++....++.+... +...+|.|.++...|+|.|+|.|.|..|......
T Consensus 9 ~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05737 9 DVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDV 88 (92)
T ss_pred ceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEE
Confidence 345788999999999999999999999999999987766666543 3456899999999999999999999999887776
Q ss_pred EEEE
Q psy8139 635 LVTV 638 (1101)
Q Consensus 635 ~l~v 638 (1101)
.+.|
T Consensus 89 ~v~v 92 (92)
T cd05737 89 TVSV 92 (92)
T ss_pred EEeC
Confidence 6653
No 39
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.06 E-value=1.9e-09 Score=94.37 Aligned_cols=81 Identities=28% Similarity=0.358 Sum_probs=68.2
Q ss_pred CCeEEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEec----CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVTD----NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~----~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~ 541 (1101)
|+.++|.|.+.|.|.+.+.|.+++..+... .++.+... ...++|.|.++...|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 788999999999999999999999887643 34544321 2236899999999999999999999999999999999
Q ss_pred eccCCc
Q psy8139 542 LEAPPT 547 (1101)
Q Consensus 542 V~~~p~ 547 (1101)
|..+|.
T Consensus 81 V~~~P~ 86 (88)
T cd05735 81 VQEPPD 86 (88)
T ss_pred EeCCCC
Confidence 998774
No 40
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.06 E-value=1.3e-09 Score=91.08 Aligned_cols=71 Identities=34% Similarity=0.537 Sum_probs=61.2
Q ss_pred eEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 469 KVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 469 ~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
++.|.|.+.|.|.|.++|++++..+....++.+...+ .|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 3789999999999999999999988766666655444 5888899999999999999999999988887765
No 41
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.05 E-value=1.6e-09 Score=97.28 Aligned_cols=90 Identities=27% Similarity=0.481 Sum_probs=71.8
Q ss_pred CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC-----CcEEEEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-----RRQRIVTDNDISTLIIHQAALMDEGEIKCT 526 (1101)
Q Consensus 452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-----~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~ 526 (1101)
+|.|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... .++.+......+.|+|.++...|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 35553 456788999999999999999999999999988655432 233333344556899999999999999999
Q ss_pred EEeCCCceEEEEEEee
Q psy8139 527 ATNRAGHSITKARLRL 542 (1101)
Q Consensus 527 a~n~~g~~~~s~~l~V 542 (1101)
|.|..|....++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999888877764
No 42
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.05 E-value=1.1e-09 Score=95.96 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=66.3
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV 636 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l 636 (1101)
...+..|+.+.|.|.+.|.|.|.++|++++.++....++.. ....|.|.++.+.|.|.|+|.|.|..|....++.|
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 85 (88)
T cd05851 10 DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM----SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARV 85 (88)
T ss_pred cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec----CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEE
Confidence 34778899999999999999999999999988765433322 24579999999999999999999999998888887
Q ss_pred EE
Q psy8139 637 TV 638 (1101)
Q Consensus 637 ~v 638 (1101)
.|
T Consensus 86 ~V 87 (88)
T cd05851 86 YV 87 (88)
T ss_pred EE
Confidence 76
No 43
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.05 E-value=1.9e-09 Score=93.50 Aligned_cols=79 Identities=27% Similarity=0.403 Sum_probs=64.4
Q ss_pred CeEEEEEEEeccCCC--eEEEEECCEEeecC---CcEEE-EecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139 468 EKVEFTVQVEGIPTP--KVSWYKDGFEIFSS---RRQRI-VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541 (1101)
Q Consensus 468 ~~v~L~C~~~g~p~~--~v~W~~~g~~~~~~---~~~~~-~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~ 541 (1101)
++++|.|.+.|.|.| .++|+++|..+... ..+.. ......++|+|.+++..|+|.|+|.|.|..|....++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999987 58999999887542 23322 2223345899999999999999999999999999999999
Q ss_pred eccCC
Q psy8139 542 LEAPP 546 (1101)
Q Consensus 542 V~~~p 546 (1101)
|..||
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98776
No 44
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.03 E-value=1.8e-09 Score=92.33 Aligned_cols=75 Identities=29% Similarity=0.425 Sum_probs=64.9
Q ss_pred CCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~ 541 (1101)
|+++.|.|.+.|.|.|.+.|++++..+....++.+...++...|.|.++...|+|.|+|.|.|..|.....+.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 678999999999999999999999888766667666666677999999999999999999999999887765443
No 45
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.03 E-value=1.2e-09 Score=91.56 Aligned_cols=73 Identities=22% Similarity=0.352 Sum_probs=63.9
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
|+.+.|.|.+.|.|.|.++|++++..+..+.++.+.. +++|.|.++.+.|.|.|+|.|.|..|....++.|+|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD---DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC---CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 5678999999999999999999998887766766643 457999999999999999999999999988887764
No 46
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.03 E-value=2.1e-09 Score=91.44 Aligned_cols=74 Identities=30% Similarity=0.543 Sum_probs=61.2
Q ss_pred CCeEEEEEEEeccCCCeEEEEECCEEeecCCcE-EEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ-RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
|+++.|.|.+.|.|.|.++|+++|..+...... ...... +.|.|.++.+.|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSS--GALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeC--CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 678999999999999999999999987653211 222222 37999999999999999999999999988888776
No 47
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.02 E-value=3.3e-09 Score=96.14 Aligned_cols=91 Identities=23% Similarity=0.438 Sum_probs=68.2
Q ss_pred CCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecC----C-cEEEEecCCeeEEEEe--ecCCCCCEEEE
Q psy8139 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS----R-RQRIVTDNDISTLIIH--QAALMDEGEIK 524 (1101)
Q Consensus 452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~----~-~~~~~~~~~~~~l~I~--~l~~~d~g~Y~ 524 (1101)
||.|...|.++.+.+|+++.|.|.+.|.|.|.+.|+++|..+... . .......+....+.+. .+...|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 577888899999999999999999999999999999999887651 2 2222223332233333 23689999999
Q ss_pred EEEEeCCCc-eEEEEEEee
Q psy8139 525 CTATNRAGH-SITKARLRL 542 (1101)
Q Consensus 525 C~a~n~~g~-~~~s~~l~V 542 (1101)
|.|.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 444566655
No 48
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.02 E-value=3.2e-09 Score=94.93 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=69.7
Q ss_pred CCeEEeeCCEEEEEEEEee-cCCCeeEEEECCeecCCCCceEEEeec-----ceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139 556 DGLLFEMGEIIKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEITHTD-----RYLNLRISDARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 556 ~~~~v~~g~~~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~-----~~~sl~i~~l~~~~~y~y~c~A~N~~G~ 629 (1101)
..+.+..|+.+.|.|.+.| .|.|.+.|+++|.++.......+...+ ..++|.|..+.+.|.|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4557888999999999999 899999999999999855443332221 2578999999999999999999999999
Q ss_pred ceeEEEEEEe
Q psy8139 630 DVASFLVTVT 639 (1101)
Q Consensus 630 ~~~s~~l~v~ 639 (1101)
.+....|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 8888887764
No 49
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.02 E-value=3.6e-09 Score=93.55 Aligned_cols=85 Identities=21% Similarity=0.354 Sum_probs=71.0
Q ss_pred cCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139 458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536 (1101)
Q Consensus 458 ~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~ 536 (1101)
.|..+.+.+|+++.|.|.+.|.|.|.+.|++++..+....++..... +...+|.|.++..+|+|.|+|.|.|..|....
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 35567899999999999999999999999999988876665554333 33458999999999999999999999999888
Q ss_pred EEEEee
Q psy8139 537 KARLRL 542 (1101)
Q Consensus 537 s~~l~V 542 (1101)
+..|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 776654
No 50
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.02 E-value=3.1e-09 Score=95.21 Aligned_cols=83 Identities=24% Similarity=0.313 Sum_probs=68.7
Q ss_pred eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEec------CCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD------NDISTLIIHQAALMDEGEIKCTATNRAGHS 534 (1101)
Q Consensus 461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~------~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~ 534 (1101)
...+..|+.+.|.|.+.|.|.|.+.|+++|.++........... ...+.|.|.++...|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 45678899999999999999999999999999876543322211 123589999999999999999999999999
Q ss_pred EEEEEEeec
Q psy8139 535 ITKARLRLE 543 (1101)
Q Consensus 535 ~~s~~l~V~ 543 (1101)
..++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888774
No 51
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.01 E-value=3.6e-09 Score=93.83 Aligned_cols=89 Identities=30% Similarity=0.487 Sum_probs=74.5
Q ss_pred CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEE
Q psy8139 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624 (1101)
Q Consensus 545 ~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~ 624 (1101)
||.+...| ....+..|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+......++|.|.++...|.|.|.|.|.
T Consensus 3 ~~~~~~~p---~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 3 PATILTKP---RSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCcccccC---ccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence 45554444 345889999999999999999999999999999877777777666667899999999999999999999
Q ss_pred eCCCCceeEEEE
Q psy8139 625 NSLGEDVASFLV 636 (1101)
Q Consensus 625 N~~G~~~~s~~l 636 (1101)
|..|....+..|
T Consensus 80 N~~G~~~~~~~l 91 (92)
T cd05747 80 NSEGKQEAQFTL 91 (92)
T ss_pred cCCCCEeEEEEe
Confidence 999987766554
No 52
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.01 E-value=2.7e-09 Score=90.17 Aligned_cols=73 Identities=29% Similarity=0.406 Sum_probs=61.2
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
+.|.|.+.|.|.|.+.|++++..+... .++.+... .+...|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 479999999999999999999988743 45555433 34457999999999999999999999999988887765
No 53
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.01 E-value=1.6e-09 Score=91.67 Aligned_cols=74 Identities=27% Similarity=0.459 Sum_probs=63.4
Q ss_pred eCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 562 MGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 562 ~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
+|+.+.|.|.+.|.|.|.++|++++..+.....+.+.. .++|.|.++.+.|.|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 47889999999999999999999999887655544432 458999999999999999999999999888877764
No 54
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.00 E-value=3.6e-09 Score=93.85 Aligned_cols=82 Identities=28% Similarity=0.529 Sum_probs=64.8
Q ss_pred CeeeecCceeEEc---cCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecC-CCCCEEEEEEEE
Q psy8139 453 PSFIRALHDTTAL---EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAA-LMDEGEIKCTAT 528 (1101)
Q Consensus 453 P~~~~~p~~~~v~---~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~-~~d~g~Y~C~a~ 528 (1101)
|.|+..|.++.+. .|+.+.|.|.+.|.|.|.++|+++|..+...........++ .|.|.++. ..|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEE
Confidence 5677777776654 46899999999999999999999999886543333333333 78998885 699999999999
Q ss_pred eCCCceEE
Q psy8139 529 NRAGHSIT 536 (1101)
Q Consensus 529 n~~g~~~~ 536 (1101)
|..|...+
T Consensus 80 N~~G~~~S 87 (94)
T cd05848 80 NSIGSILS 87 (94)
T ss_pred cCCCeEEe
Confidence 99998754
No 55
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.00 E-value=2.3e-09 Score=90.12 Aligned_cols=73 Identities=25% Similarity=0.454 Sum_probs=60.9
Q ss_pred EEEEEEEeecCCCeeEEEECCeecCC-CCceEEEeec-ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 566 IKLKVSMAGMPPPTARWLHNGEPLTS-GGRYEITHTD-RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 566 ~~l~c~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~-~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
+.|.|.+.|.|.|.+.|++++..+.. +.++.+...+ +..+|.|.++...|.|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 36899999999999999999999874 3456554432 3358999999999999999999999999888887764
No 56
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.00 E-value=2.2e-09 Score=91.10 Aligned_cols=74 Identities=23% Similarity=0.407 Sum_probs=61.3
Q ss_pred CCeEEEEEEEeccCCCeEEEEECCEEeecCCc-EEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRR-QRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~-~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
|+++.|.|.+.|.|.|.|+|+++|.++..... ......++ .|.|.++.+.|+|.|+|.|.|..|...+++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 67899999999999999999999998854321 11222332 7999999999999999999999999999988876
No 57
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.00 E-value=2.4e-09 Score=90.25 Aligned_cols=73 Identities=27% Similarity=0.378 Sum_probs=63.6
Q ss_pred CCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
|+.+.|.|.+.|.|.|.++|++++..+....++.+...+ .|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 678999999999999999999999988766666654333 7999999999999999999999999988887765
No 58
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.99 E-value=2.6e-09 Score=91.45 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=63.7
Q ss_pred CeEEEEEEEec--cCCCeEEEEECCEEeec--C-CcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139 468 EKVEFTVQVEG--IPTPKVSWYKDGFEIFS--S-RRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541 (1101)
Q Consensus 468 ~~v~L~C~~~g--~p~~~v~W~~~g~~~~~--~-~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~ 541 (1101)
+++.|.|.+.+ .+.+.+.|+++|..+.. . .++..... ...+.|+|.+++..|+|.|+|.|.|..+....++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 46889999977 44778999999999862 2 23333221 2234899999999999999999999999999999999
Q ss_pred eccCC
Q psy8139 542 LEAPP 546 (1101)
Q Consensus 542 V~~~p 546 (1101)
|..||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99887
No 59
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.98 E-value=6.8e-09 Score=92.17 Aligned_cols=82 Identities=26% Similarity=0.396 Sum_probs=63.7
Q ss_pred CeeeecCceeEEccC---CeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecC-CCCCEEEEEEEE
Q psy8139 453 PSFIRALHDTTALED---EKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAA-LMDEGEIKCTAT 528 (1101)
Q Consensus 453 P~~~~~p~~~~v~~g---~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~-~~d~g~Y~C~a~ 528 (1101)
|.|...|.++.+.+| ++++|.|.+.|.|.|.++|+++|..+...........++ .|.|.++. ..|+|.|+|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEEEEE
Confidence 567777888877665 579999999999999999999999886432222222222 78898865 589999999999
Q ss_pred eCCCceEE
Q psy8139 529 NRAGHSIT 536 (1101)
Q Consensus 529 n~~g~~~~ 536 (1101)
|..|...+
T Consensus 80 N~~G~~~s 87 (94)
T cd05850 80 NRCGTVVS 87 (94)
T ss_pred cCcCcEEE
Confidence 99998765
No 60
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.97 E-value=4.6e-09 Score=88.90 Aligned_cols=73 Identities=37% Similarity=0.639 Sum_probs=64.8
Q ss_pred EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
+.|.|.+.|.|.|.+.|+++|..+..+.++.+...+..+.|.|.++.+.|.|.|+|.|.|..|..+.+..|.|
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 5799999999999999999999997777777776667889999999999999999999999999887777654
No 61
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.97 E-value=7.1e-09 Score=94.75 Aligned_cols=101 Identities=27% Similarity=0.315 Sum_probs=75.0
Q ss_pred ccCCccccCCCCCCCeEE-eeCCEEEEEEEEeecCCCeeEEEECCeecCC-CCceEEEee----cceEEEEEccCC-CCC
Q psy8139 543 EAPPTIRLPKQYEDGLLF-EMGEIIKLKVSMAGMPPPTARWLHNGEPLTS-GGRYEITHT----DRYLNLRISDAR-RAD 615 (1101)
Q Consensus 543 ~~~p~~~~~~~~~~~~~v-~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~----~~~~sl~i~~l~-~~~ 615 (1101)
..+|.+..++........ ..|..+.|.|.+.|.|.+.+.|+++|..+.. +.++.+... ...+.|.|.++. ..|
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 456666666543211111 2457899999999999999999999998864 334443221 124679999997 589
Q ss_pred CeEEEEEEEeCCCCceeEEEEEEecCCC
Q psy8139 616 RGEYQAHGVNSLGEDVASFLVTVTDRPL 643 (1101)
Q Consensus 616 ~y~y~c~A~N~~G~~~~s~~l~v~~~P~ 643 (1101)
.|.|+|.|.|..|.......|.+..+|+
T Consensus 82 ~G~Y~C~A~N~~G~~~~~i~L~~~~~p~ 109 (109)
T cd05773 82 YALFTCTAHNSLGEDSLDIQLVSTSRPD 109 (109)
T ss_pred CEEEEEEEEeCCccCcEEEEEEecCCCC
Confidence 9999999999999999999999987764
No 62
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.97 E-value=8.2e-09 Score=91.10 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=68.0
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV 636 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l 636 (1101)
...+..|+.+.|.|.+.|.|.|.+.|+++|..+................|.|.++.+.|.|.|+|.|.|..|....++.|
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 34588899999999999999999999999988765443333333446789999999999999999999999998888776
Q ss_pred EE
Q psy8139 637 TV 638 (1101)
Q Consensus 637 ~v 638 (1101)
.|
T Consensus 89 ~v 90 (90)
T cd04972 89 TV 90 (90)
T ss_pred eC
Confidence 53
No 63
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.97 E-value=6.5e-09 Score=90.82 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=66.0
Q ss_pred eEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEE-EEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR-IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540 (1101)
Q Consensus 462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~-~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l 540 (1101)
..+..|..+.|.|.+.|.|.|.+.|+++|..+....... .........|.|.++.+.|+|.|+|.|.|..|....++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 357789999999999999999999999999886543321 1112334579999999999999999999999998888877
Q ss_pred ee
Q psy8139 541 RL 542 (1101)
Q Consensus 541 ~V 542 (1101)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 65
No 64
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.96 E-value=3.2e-09 Score=86.58 Aligned_cols=65 Identities=28% Similarity=0.413 Sum_probs=55.1
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
+.|.|.+.|.|.|.++|+++|..+... ...+.|.|.++..+|+|.|+|.|.|..|....+..+.|
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 468999999999999999999988532 22348999999999999999999999998777666554
No 65
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.96 E-value=3.2e-09 Score=92.90 Aligned_cols=59 Identities=36% Similarity=0.647 Sum_probs=46.5
Q ss_pred CCCCcceEEEEEEeCCCCC-ceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCC
Q psy8139 715 GGSPVLGYLVEHRRTGSPY-WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG 774 (1101)
Q Consensus 715 ~~~~i~~Y~V~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S 774 (1101)
+++.+.+|.|.|...++.. |..... ....+.++|.+|.|++.|.|+|.|.|..|.|++|
T Consensus 26 ~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g~g~~S 85 (85)
T PF00041_consen 26 GNGPITGYRVEYRSVNSTSDWQEVTV-PGNETSYTITGLQPGTTYEFRVRAVNSDGEGPPS 85 (85)
T ss_dssp TSSSESEEEEEEEETTSSSEEEEEEE-ETTSSEEEEESCCTTSEEEEEEEEEETTEEEEEE
T ss_pred CCCCeeEEEEEEEecccceeeeeeee-eeeeeeeeeccCCCCCEEEEEEEEEeCCcCcCCC
Confidence 3456888888888877665 444433 2556699999999999999999999999998764
No 66
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.96 E-value=8.1e-09 Score=91.20 Aligned_cols=80 Identities=25% Similarity=0.389 Sum_probs=62.5
Q ss_pred CeeeecCceeEEccC---CeEEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEecCCeeEEEEeecC-CCCCEEEEEEE
Q psy8139 453 PSFIRALHDTTALED---EKVEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVTDNDISTLIIHQAA-LMDEGEIKCTA 527 (1101)
Q Consensus 453 P~~~~~p~~~~v~~g---~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~l~I~~l~-~~d~g~Y~C~a 527 (1101)
|.|...|.++.+.++ ..+.|.|.+.|.|.|.++|++++..+... .++. . .++ .|.|.++. ..|+|.|+|.|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~-~-~~g--~L~I~~~~~~~D~G~Y~C~A 77 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYS-M-VGG--NLVINNPDKYKDAGRYVCIV 77 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEE-E-ECC--EEEECcCCcCCCCEEEEEEE
Confidence 566667777665544 47999999999999999999999887533 3332 2 233 79999985 68999999999
Q ss_pred EeCCCceEE
Q psy8139 528 TNRAGHSIT 536 (1101)
Q Consensus 528 ~n~~g~~~~ 536 (1101)
.|..|...+
T Consensus 78 ~N~~G~~~s 86 (93)
T cd05849 78 SNIYGKVRS 86 (93)
T ss_pred EeCcceEEE
Confidence 999998755
No 67
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.95 E-value=9.5e-09 Score=93.90 Aligned_cols=95 Identities=22% Similarity=0.325 Sum_probs=72.0
Q ss_pred CCeeeecCceeEE----ccCCeEEEEEEEeccCCCeEEEEECCEEeecC-CcEEEEe--c--CCeeEEEEeecC-CCCCE
Q psy8139 452 APSFIRALHDTTA----LEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS-RRQRIVT--D--NDISTLIIHQAA-LMDEG 521 (1101)
Q Consensus 452 ~P~~~~~p~~~~v----~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~-~~~~~~~--~--~~~~~l~I~~l~-~~d~g 521 (1101)
+|.|...|....+ ..|..++|.|.+.|.|.+.++|+++|..+... .++.... . ...+.|+|.++. ..|.|
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G 83 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYA 83 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCE
Confidence 4555554442222 24678999999999999999999999988643 3333221 1 113589999997 58999
Q ss_pred EEEEEEEeCCCceEEEEEEeeccCC
Q psy8139 522 EIKCTATNRAGHSITKARLRLEAPP 546 (1101)
Q Consensus 522 ~Y~C~a~n~~g~~~~s~~l~V~~~p 546 (1101)
.|+|.|.|..|.......|.|..+|
T Consensus 84 ~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 84 LFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEEEEEeCCccCcEEEEEEecCCC
Confidence 9999999999999999999998776
No 68
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.94 E-value=4.6e-09 Score=89.53 Aligned_cols=74 Identities=27% Similarity=0.432 Sum_probs=61.9
Q ss_pred CCeEEEEEEEeccCCCeEEEEECCEEeecCCcE-EEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ-RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
|+.+.|.|.+.|.|.|.+.|+++|..+...... ..... ...|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVD--GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEcc--CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 678999999999999999999999988654332 22222 248999999999999999999999999988888876
No 69
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.94 E-value=6.4e-09 Score=90.68 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=63.4
Q ss_pred CeEEEEEEEeccCCC--eEEEEECCEEeecCC---cEE-EEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139 468 EKVEFTVQVEGIPTP--KVSWYKDGFEIFSSR---RQR-IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541 (1101)
Q Consensus 468 ~~v~L~C~~~g~p~~--~v~W~~~g~~~~~~~---~~~-~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~ 541 (1101)
+++.|.|.+.|.|.| .+.|+++|..+.... .+. .......+.|.|.+++..|+|.|+|.|.|..|....++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468899999999987 679999999876432 121 11222345899999999999999999999999999999999
Q ss_pred eccCC
Q psy8139 542 LEAPP 546 (1101)
Q Consensus 542 V~~~p 546 (1101)
|..||
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98876
No 70
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.94 E-value=8.9e-09 Score=89.35 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=63.9
Q ss_pred EEEEEEEEeecCCC--eeEEEECCeecCCC---CceE-EEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 565 IIKLKVSMAGMPPP--TARWLHNGEPLTSG---GRYE-ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 565 ~~~l~c~~~g~p~~--~v~W~~~g~~l~~~---~~~~-~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
++.|.|.+.|+|.| .+.|+++|.++... .++. +......++|+|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus 2 ~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V 81 (85)
T cd05854 2 NLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVV 81 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEE
Confidence 57899999999977 68999999887542 2332 222234578999999999999999999999999999999999
Q ss_pred ecCC
Q psy8139 639 TDRP 642 (1101)
Q Consensus 639 ~~~P 642 (1101)
.++|
T Consensus 82 ~~~P 85 (85)
T cd05854 82 RGPP 85 (85)
T ss_pred ECCC
Confidence 8765
No 71
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.94 E-value=7.7e-09 Score=88.40 Aligned_cols=75 Identities=25% Similarity=0.424 Sum_probs=64.1
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT 637 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~ 637 (1101)
|+++.|.|.+.|.|.|.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 578899999999999999999999888776677666666678999999999999999999999999876554443
No 72
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.93 E-value=4.9e-09 Score=88.28 Aligned_cols=73 Identities=26% Similarity=0.472 Sum_probs=60.2
Q ss_pred EEEEEEEeecCCCeeEEEECCeecCCC-CceEEEeec-ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 566 IKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHTD-RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~-~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
+.|.|.+.|.|.|.+.|++++.++... .++.+...+ +...|.|.++.+.|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 368999999999999999999988753 445554332 2347999999999999999999999999988887764
No 73
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.93 E-value=3.8e-09 Score=87.85 Aligned_cols=68 Identities=28% Similarity=0.555 Sum_probs=58.2
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l 540 (1101)
+.|.|.+.|.|.|.++|+++|..+....++.+... +.|.|.++...|+|.|+|.|.|..|....++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 46899999999999999999988876666554333 389999999999999999999999998877665
No 74
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.92 E-value=1e-08 Score=90.16 Aligned_cols=80 Identities=20% Similarity=0.384 Sum_probs=65.0
Q ss_pred CceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-E
Q psy8139 459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-K 537 (1101)
Q Consensus 459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s 537 (1101)
+.+..+.+|++++|.|.+.|. .|.+.|++++..+... ++.+... ...|.|.++...|+|.|+|.|.|..|...+ .
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~ 85 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSND--NRTLTFNNVTRSDTGHYQCEASNEVSNMTSDP 85 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCC--CCEEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence 456788999999999999999 9999999999887543 3433322 348999999999999999999999998655 4
Q ss_pred EEEee
Q psy8139 538 ARLRL 542 (1101)
Q Consensus 538 ~~l~V 542 (1101)
+.|.|
T Consensus 86 ~~L~V 90 (91)
T cd05740 86 YILNV 90 (91)
T ss_pred EEEEe
Confidence 55655
No 75
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.90 E-value=1.3e-08 Score=91.32 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=68.0
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEe------ecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH------TDRYLNLRISDARRADRGEYQAHGVNSLGED 630 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~------~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~ 630 (1101)
...+..|..+.|.|.+.|.|.|.+.|+++|.++..+....... ....++|.|.++...|.|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 4467778999999999999999999999999987654332221 1124689999999999999999999999998
Q ss_pred eeEEEEEEe
Q psy8139 631 VASFLVTVT 639 (1101)
Q Consensus 631 ~~s~~l~v~ 639 (1101)
+.+..+.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888887764
No 76
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.90 E-value=8.6e-09 Score=86.18 Aligned_cols=70 Identities=26% Similarity=0.509 Sum_probs=59.4
Q ss_pred EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
+.|.|.+.|.|.|.++|+++|..+.....+.+.. ...+.|.++.+.|.|.|+|.|.|..|....++.|.|
T Consensus 2 v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~---~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 2 VIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVK---EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred EEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEe---cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 5799999999999999999999887666655543 345788899999999999999999999888877754
No 77
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.90 E-value=1.7e-08 Score=90.22 Aligned_cols=81 Identities=28% Similarity=0.541 Sum_probs=68.3
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC-CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL 635 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~ 635 (1101)
...+..|+.+.|.|.+.|.|.|.+.|.++|..+... ..+.. ....+.|.|.++...|.|.|+|.|.|..|....+..
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 446788999999999999999999999999988754 33332 233557999999999999999999999999888888
Q ss_pred EEEe
Q psy8139 636 VTVT 639 (1101)
Q Consensus 636 l~v~ 639 (1101)
|.|.
T Consensus 90 L~V~ 93 (95)
T cd05730 90 LKVF 93 (95)
T ss_pred EEEE
Confidence 8775
No 78
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.89 E-value=1.1e-08 Score=89.08 Aligned_cols=78 Identities=33% Similarity=0.518 Sum_probs=67.3
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV 636 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l 636 (1101)
...+..|+.+.|.|.+.|.|.|.+.|+++|..+....++... .+.|.|.++...|.|.|+|.|.|..|....++.|
T Consensus 8 ~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05728 8 DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTIYASAEL 83 (85)
T ss_pred ccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEE
Confidence 347888999999999999999999999999998766555443 4579999999999999999999999998877776
Q ss_pred EE
Q psy8139 637 TV 638 (1101)
Q Consensus 637 ~v 638 (1101)
.|
T Consensus 84 ~V 85 (85)
T cd05728 84 AV 85 (85)
T ss_pred EC
Confidence 54
No 79
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.89 E-value=1.1e-08 Score=87.35 Aligned_cols=73 Identities=19% Similarity=0.349 Sum_probs=59.3
Q ss_pred eecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139 456 IRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS 534 (1101)
Q Consensus 456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~ 534 (1101)
...|.++.+..|+++.|.|.+.|.|.| .|+|.++|.++... . ....+.|.|.++ .|+|.|.|.|.|..|..
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~----~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P----APSPSVLNVPGL--NETSKFSCEAHNAKGVT 73 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C----CCCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence 345778899999999999999999999 79999999987541 1 122247888887 47899999999999976
Q ss_pred EE
Q psy8139 535 IT 536 (1101)
Q Consensus 535 ~~ 536 (1101)
.+
T Consensus 74 ~s 75 (81)
T cd05749 74 TS 75 (81)
T ss_pred Ee
Confidence 65
No 80
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.89 E-value=7e-09 Score=86.75 Aligned_cols=70 Identities=27% Similarity=0.459 Sum_probs=57.2
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
+.|.|.+.|.|.|.+.|++++..+.... .... .....|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4689999999999999999987665432 2222 22348999999999999999999999999888877776
No 81
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.88 E-value=1e-08 Score=87.76 Aligned_cols=78 Identities=21% Similarity=0.213 Sum_probs=64.0
Q ss_pred EEEEEEEEeecC--CCeeEEEECCeecCC---CCceEEEee-cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 565 IIKLKVSMAGMP--PPTARWLHNGEPLTS---GGRYEITHT-DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 565 ~~~l~c~~~g~p--~~~v~W~~~g~~l~~---~~~~~~~~~-~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
++.|.|.+.++| .+.+.|+++|.++.. +.++..... ...++|.|.+++..|.|+|+|.|.|..+..+.++.|.|
T Consensus 2 ~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V 81 (85)
T cd05853 2 SIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIV 81 (85)
T ss_pred cEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEE
Confidence 578999998855 789999999999963 234433211 23568999999999999999999999999999999999
Q ss_pred ecCC
Q psy8139 639 TDRP 642 (1101)
Q Consensus 639 ~~~P 642 (1101)
.+||
T Consensus 82 ~~pP 85 (85)
T cd05853 82 RGPP 85 (85)
T ss_pred ecCC
Confidence 9776
No 82
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.88 E-value=1.1e-08 Score=87.08 Aligned_cols=71 Identities=24% Similarity=0.480 Sum_probs=56.1
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecCC-cEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSR-RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~-~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
++|.|.+.|.|.|.++|+++|.++.... .+.+.. ....|.|.++.++|+|.|+|.|.|..|...++..+.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 4799999999999999999999886543 333332 2348999999999999999999999998765444333
No 83
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.88 E-value=2.1e-08 Score=88.82 Aligned_cols=83 Identities=39% Similarity=0.640 Sum_probs=75.9
Q ss_pred CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139 556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL 635 (1101)
Q Consensus 556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~ 635 (1101)
..+.+..|+++.|.|.+.+.|.+.+.|+++|..+..+.++.+...+...+|.|.++...|.|.|+|.|.|..|.......
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~ 87 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVN 87 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEE
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEE
Confidence 35578899999999999999999999999999999888888888888999999999999999999999999998888877
Q ss_pred EEE
Q psy8139 636 VTV 638 (1101)
Q Consensus 636 l~v 638 (1101)
|.|
T Consensus 88 l~V 90 (90)
T PF07679_consen 88 LTV 90 (90)
T ss_dssp EEE
T ss_pred EEC
Confidence 765
No 84
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.88 E-value=1.1e-08 Score=86.68 Aligned_cols=74 Identities=26% Similarity=0.331 Sum_probs=60.6
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCCCce-EEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY-EITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
|+.+.|.|.+.|.|.|.++|+++|.++...... .... +...+.|.++++.|.|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV--DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe--cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 567889999999999999999999988643211 1111 2347899999999999999999999999999888876
No 85
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.88 E-value=1.7e-08 Score=90.12 Aligned_cols=85 Identities=29% Similarity=0.515 Sum_probs=65.4
Q ss_pred eeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCc--EEEEecCCeeEEEEeec-----CCCCCEEEEEEE
Q psy8139 455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRR--QRIVTDNDISTLIIHQA-----ALMDEGEIKCTA 527 (1101)
Q Consensus 455 ~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~--~~~~~~~~~~~l~I~~l-----~~~d~g~Y~C~a 527 (1101)
|...|.+..+..|+++.|.|.+.|.|.|.+.|+++|..+..... ......+ ++.|.++ ...|.|.|+|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEE
Confidence 44567788889999999999999999999999999998865432 3332222 5777776 578999999999
Q ss_pred EeC-CCceEE-EEEEee
Q psy8139 528 TNR-AGHSIT-KARLRL 542 (1101)
Q Consensus 528 ~n~-~g~~~~-s~~l~V 542 (1101)
.|. .|...+ .+.|.|
T Consensus 79 ~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 79 QNDSLGSIVSRTARLTV 95 (95)
T ss_pred ECCccCcEEEeeeEEeC
Confidence 999 887644 455543
No 86
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.87 E-value=3e-08 Score=87.64 Aligned_cols=84 Identities=29% Similarity=0.426 Sum_probs=64.6
Q ss_pred ecCceeEEccCCeEEEEEEEeccCCCeEEEEE-CCEEeecCCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeCCCc-
Q psy8139 457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGH- 533 (1101)
Q Consensus 457 ~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~- 533 (1101)
..|.+..+..|+++.|.|.+.|.|. .+.|++ ++..+....++.+... ...++|+|.++..+|+|.|+|.|.|..|.
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~ 83 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTE 83 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence 4566788999999999999999975 999997 5666655444444333 34569999999999999999999998654
Q ss_pred eEEEEEEe
Q psy8139 534 SITKARLR 541 (1101)
Q Consensus 534 ~~~s~~l~ 541 (1101)
...++.|.
T Consensus 84 ~~~sv~l~ 91 (92)
T cd04977 84 SEATVNLK 91 (92)
T ss_pred ceeEEEEE
Confidence 44455554
No 87
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.87 E-value=1.7e-08 Score=83.51 Aligned_cols=68 Identities=22% Similarity=0.375 Sum_probs=55.1
Q ss_pred CCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l 540 (1101)
|++++|.|.+.|.|.|.|+|++++..+.....+.. +...|.|.++. |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999988765443221 22378898874 7999999999999988777665
No 88
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.87 E-value=1.3e-08 Score=89.91 Aligned_cols=77 Identities=30% Similarity=0.440 Sum_probs=62.5
Q ss_pred CCeEEEEEEEeccCCCeEEEEECCEEee--------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDGFEIF--------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~--------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~ 538 (1101)
|+++.|.|.+.|.|.|.+.|++++..+. ...++.+... ..|+|.++...|+|.|+|.|.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 6789999999999999999999876431 1233433222 2799999999999999999999999999999
Q ss_pred EEeeccCC
Q psy8139 539 RLRLEAPP 546 (1101)
Q Consensus 539 ~l~V~~~p 546 (1101)
.|.|....
T Consensus 78 ~l~V~~~~ 85 (90)
T cd05726 78 YLEVTDVI 85 (90)
T ss_pred EEEEeecc
Confidence 99987643
No 89
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.87 E-value=1.7e-08 Score=85.31 Aligned_cols=73 Identities=27% Similarity=0.444 Sum_probs=60.1
Q ss_pred EEEEEEEeecCCCeeEEEECCeecCCC-CceEEEee-cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 566 IKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHT-DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~-~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
+.|.|.+.|.|.|.+.|++++..+... .++.+... .+..+|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 368999999999999999999998743 45554433 23457999999999999999999999999888877654
No 90
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.87 E-value=2.8e-08 Score=87.87 Aligned_cols=83 Identities=23% Similarity=0.472 Sum_probs=69.3
Q ss_pred CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeec-ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139 556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD-RYLNLRISDARRADRGEYQAHGVNSLGEDVASF 634 (1101)
Q Consensus 556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~-~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~ 634 (1101)
..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+.... ...+|.|.++++.|.|.|+|.|.|..|....+.
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 88 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDV 88 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEE
Confidence 3557889999999999999999999999999988766665544332 345799999999999999999999999988877
Q ss_pred EEEE
Q psy8139 635 LVTV 638 (1101)
Q Consensus 635 ~l~v 638 (1101)
.|.|
T Consensus 89 ~v~~ 92 (92)
T cd05891 89 TVSV 92 (92)
T ss_pred EEEC
Confidence 6654
No 91
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.87 E-value=1.4e-08 Score=86.98 Aligned_cols=79 Identities=19% Similarity=0.383 Sum_probs=64.5
Q ss_pred CceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139 459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538 (1101)
Q Consensus 459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~ 538 (1101)
|.+..+..|+++.|.|.+.+. .+.+.|+++|.++....++.+. ++ .|.|.++..+|+|.|+|.|.|..|.....+
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--GE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--CC--EEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence 456778899999999999986 5689999999988766555542 32 799999999999999999999988876665
Q ss_pred EEee
Q psy8139 539 RLRL 542 (1101)
Q Consensus 539 ~l~V 542 (1101)
.|.|
T Consensus 76 ~v~V 79 (79)
T cd04973 76 SVNV 79 (79)
T ss_pred EEeC
Confidence 5543
No 92
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.87 E-value=2.1e-08 Score=87.90 Aligned_cols=81 Identities=38% Similarity=0.539 Sum_probs=65.1
Q ss_pred cCceeEEccCCeEEEEEEE-eccCCCeEEEEECCEEeecC-CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139 458 ALHDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIFSS-RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI 535 (1101)
Q Consensus 458 ~p~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~-~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~ 535 (1101)
.|.+..+..|+++.|.|.+ .|.|.|.+.|++++..+... .++.+.. + +.|.|.++...|+|.|+|.|.|..|...
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~-~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD-D--GNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc-C--CEEEEeECCcccCEEEEEEEEeccCcee
Confidence 3567788999999999998 79999999999999987753 3444333 2 3899999999999999999999999865
Q ss_pred E-EEEEe
Q psy8139 536 T-KARLR 541 (1101)
Q Consensus 536 ~-s~~l~ 541 (1101)
+ .+.|.
T Consensus 79 s~~~~l~ 85 (86)
T cd05724 79 SAAARLS 85 (86)
T ss_pred eeeEEEE
Confidence 4 34443
No 93
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.86 E-value=1.9e-08 Score=85.52 Aligned_cols=72 Identities=29% Similarity=0.507 Sum_probs=60.8
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCCC---ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGG---RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~---~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
|+.+.|.|.+.|.|.|.++|+++|.++.... .+.+ ..+.|.|.++++.|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV----SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe----eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 5788999999999999999999999886432 2222 2567999999999999999999999999888877766
No 94
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.86 E-value=1.4e-08 Score=85.66 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=63.0
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
|+.+.|.|.+.|.|.|.++|++++..+....++.+.. .++|.|.++.+.|.|.|+|.|.|..|....+..|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP---DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC---CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 5678999999999999999999999887666665542 457999999999999999999999999888877764
No 95
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.86 E-value=3e-08 Score=89.02 Aligned_cols=88 Identities=25% Similarity=0.311 Sum_probs=69.1
Q ss_pred CCeeeecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeecC--CcEEEEec----CCeeEEEEeecCCCC-CEEE
Q psy8139 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSS--RRQRIVTD----NDISTLIIHQAALMD-EGEI 523 (1101)
Q Consensus 452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~--~~~~~~~~----~~~~~l~I~~l~~~d-~g~Y 523 (1101)
||.+ ..+....+..|+++.|.|.+.|.|.| .+.|++++..+... .++.+... +..+.|+|.++...| .|.|
T Consensus 2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 4444 34566778999999999999999999 69999999887643 45555433 234589999999955 8999
Q ss_pred EEEEEeCCCceEEEEEE
Q psy8139 524 KCTATNRAGHSITKARL 540 (1101)
Q Consensus 524 ~C~a~n~~g~~~~s~~l 540 (1101)
.|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999988776654
No 96
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.85 E-value=1.1e-08 Score=84.64 Aligned_cols=68 Identities=26% Similarity=0.411 Sum_probs=55.6
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
+.|.|.+.|.|.|.++|+++|.++.....+ . .+ ..|.|.++...|+|.|+|.|.|..|.......+.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~-~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K-RG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c-cC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 368999999999999999999998654322 1 22 37999999999999999999999998777655544
No 97
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.85 E-value=3e-08 Score=88.87 Aligned_cols=80 Identities=26% Similarity=0.465 Sum_probs=64.0
Q ss_pred EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC-----CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139 559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG-----GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS 633 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s 633 (1101)
.+..|+.+.|.|.+.|.|.|.++|++++..+... .++.+......+.|.|.++...|.|.|+|.|.|..|....+
T Consensus 13 ~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 92 (97)
T cd05869 13 AMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS 92 (97)
T ss_pred EEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence 4445799999999999999999999988776432 22333333345789999999999999999999999998888
Q ss_pred EEEEE
Q psy8139 634 FLVTV 638 (1101)
Q Consensus 634 ~~l~v 638 (1101)
..|.|
T Consensus 93 ~~l~v 97 (97)
T cd05869 93 MYLEV 97 (97)
T ss_pred EEEEC
Confidence 77654
No 98
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.84 E-value=1.4e-08 Score=86.05 Aligned_cols=71 Identities=31% Similarity=0.581 Sum_probs=56.6
Q ss_pred EEEEEEEeccCCCeEEEEECCEEee---cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIF---SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~---~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
+.|.|.+.|.|.|.++|++++.... ...++.+...+ ..|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPED--DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCC--CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 3689999999999999999886422 22233333333 38999999999999999999999999888888876
No 99
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.84 E-value=2.9e-08 Score=88.07 Aligned_cols=80 Identities=29% Similarity=0.368 Sum_probs=64.0
Q ss_pred EEeeCCEEEEEEEEeecCC-CeeEEEE-CCeecCC-CCceEEEee-cceEEEEEccCCCCCCeEEEEEEEeCC-CCceeE
Q psy8139 559 LFEMGEIIKLKVSMAGMPP-PTARWLH-NGEPLTS-GGRYEITHT-DRYLNLRISDARRADRGEYQAHGVNSL-GEDVAS 633 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~p~-~~v~W~~-~g~~l~~-~~~~~~~~~-~~~~sl~i~~l~~~~~y~y~c~A~N~~-G~~~~s 633 (1101)
.+..|+++.|.|.+.|.|. |.+.|++ ++..+.. +.++.+... +..++|.|.++++.|.|.|+|.|.|.. |....+
T Consensus 11 ~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s 90 (96)
T cd05865 11 EISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEAT 90 (96)
T ss_pred EECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence 5778999999999999995 7999997 7776654 334444332 235789999999999999999999996 777777
Q ss_pred EEEEE
Q psy8139 634 FLVTV 638 (1101)
Q Consensus 634 ~~l~v 638 (1101)
+.|.|
T Consensus 91 ~~l~v 95 (96)
T cd05865 91 VNVKI 95 (96)
T ss_pred EEEEE
Confidence 77765
No 100
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.84 E-value=1.6e-08 Score=82.40 Aligned_cols=64 Identities=27% Similarity=0.425 Sum_probs=55.1
Q ss_pred EEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 567 ~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
.|.|.+.|.|.|.+.|+++|.++... ...+.|.|.++...|.|.|+|.|.|..|....+..+.+
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 2 KLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred EEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 58999999999999999999988632 12568999999999999999999999998777766655
No 101
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.84 E-value=2.3e-08 Score=85.58 Aligned_cols=70 Identities=20% Similarity=0.356 Sum_probs=56.6
Q ss_pred EEEEEeccCCCeEEEEECCEEeecCCcEEEEe-------cCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139 472 FTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT-------DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541 (1101)
Q Consensus 472 L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~-------~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~ 541 (1101)
|.|.+.|.|.|.|+|+++|..+.......... ....+.|.|.++...|+|.|+|.|.|..|....+..|.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 68999999999999999999987665432221 12345799999999999999999999999988766554
No 102
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.84 E-value=2e-08 Score=85.58 Aligned_cols=75 Identities=28% Similarity=0.354 Sum_probs=62.2
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
|+.+.|.|.+.|.|.|.+.|+++|..+...... .......+.|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 577899999999999999999999988654322 112233578999999999999999999999999888887776
No 103
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.84 E-value=3.2e-08 Score=86.97 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=65.6
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV 636 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l 636 (1101)
...+..|+.+.|.|.+.|.|.|.+.|++++..+....... ...+.|.|.++...|+|.|+|.|.|..|....++.|
T Consensus 10 ~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 85 (88)
T cd04968 10 DTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRI 85 (88)
T ss_pred ceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEE
Confidence 3467889999999999999999999999887665443322 235789999999999999999999999998888877
Q ss_pred EE
Q psy8139 637 TV 638 (1101)
Q Consensus 637 ~v 638 (1101)
.|
T Consensus 86 ~V 87 (88)
T cd04968 86 YV 87 (88)
T ss_pred EE
Confidence 76
No 104
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.84 E-value=2.7e-08 Score=86.92 Aligned_cols=80 Identities=24% Similarity=0.430 Sum_probs=65.3
Q ss_pred EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceE-EEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139 559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYE-ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT 637 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~ 637 (1101)
.+..|..+.|.|.+.|.|.|.+.|+++|..+..+.... ........+|.|.++.+.|.|.|+|.|.|..|....+..|.
T Consensus 5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 84 (85)
T cd05857 5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 84 (85)
T ss_pred EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence 46679999999999999999999999999987554321 12223356799999999999999999999999988877765
Q ss_pred E
Q psy8139 638 V 638 (1101)
Q Consensus 638 v 638 (1101)
|
T Consensus 85 v 85 (85)
T cd05857 85 V 85 (85)
T ss_pred C
Confidence 4
No 105
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.83 E-value=1.7e-08 Score=83.93 Aligned_cols=69 Identities=36% Similarity=0.553 Sum_probs=56.9
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
++|.|.+.|.|.|.+.|++++..+.. .++..... ..|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEILDD---KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCC-CcEEEeeC---CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47899999999999999999876643 34444422 38999999999999999999999999888877764
No 106
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.82 E-value=1.3e-08 Score=84.68 Aligned_cols=68 Identities=29% Similarity=0.546 Sum_probs=58.4
Q ss_pred EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV 636 (1101)
Q Consensus 566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l 636 (1101)
+.|.|.+.|.|.|.+.|+++|..+..+.++.+.. .+.|.|.++...|.|.|+|.|.|..|..+.+..|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 3689999999999999999999887666665543 4589999999999999999999999998777655
No 107
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.82 E-value=2e-08 Score=83.81 Aligned_cols=69 Identities=26% Similarity=0.493 Sum_probs=57.0
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
+.|.|.+.|.|.|.+.|+++|..+.....+. ..+ ..|.|.++...|+|.|+|.|.|..|....+..+.|
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~--~~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK--KSG--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE--cCC--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 4689999999999999999999887654322 222 48999999999999999999999998777666554
No 108
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.82 E-value=2.2e-08 Score=88.25 Aligned_cols=76 Identities=25% Similarity=0.424 Sum_probs=58.7
Q ss_pred CCeEEEEEEEeccCCCeEEEEEC----CEEeecCCc--EEEEec-------CCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKD----GFEIFSSRR--QRIVTD-------NDISTLIIHQAALMDEGEIKCTATNRAGH 533 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~----g~~~~~~~~--~~~~~~-------~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~ 533 (1101)
|+++.|.|.+.|.|.|.|+|+++ +..+..... ..+... ...+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 443332221 111111 12358999999999999999999999999
Q ss_pred eEEEEEEee
Q psy8139 534 SITKARLRL 542 (1101)
Q Consensus 534 ~~~s~~l~V 542 (1101)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 988888877
No 109
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.82 E-value=2.9e-08 Score=89.14 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=65.4
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEEC--CeecCC-----CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHN--GEPLTS-----GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~--g~~l~~-----~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~ 629 (1101)
+..+..|+.+.|.|.+.|.|.|.+.|++. +..+.. +.++.+.......+|.|.++++.|+|.|+|.|.|..|.
T Consensus 10 ~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 89 (98)
T cd05870 10 NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGG 89 (98)
T ss_pred cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCc
Confidence 45788899999999999999999999984 433321 23455544444678999999999999999999999999
Q ss_pred ceeEEEEEE
Q psy8139 630 DVASFLVTV 638 (1101)
Q Consensus 630 ~~~s~~l~v 638 (1101)
...+..|.|
T Consensus 90 ~~~~~~l~~ 98 (98)
T cd05870 90 HQKSMYLDI 98 (98)
T ss_pred ceeEEEEeC
Confidence 888777653
No 110
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.82 E-value=3.5e-08 Score=83.46 Aligned_cols=73 Identities=27% Similarity=0.513 Sum_probs=58.9
Q ss_pred CCeEEEEEEEeccCCCeEEEEE-CCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~-~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+...... ..|.|.++...|.|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDN---GTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecC---CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6789999999999999999997 5666554444433332 27999999999999999999999998877776654
No 111
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.81 E-value=2.4e-08 Score=84.22 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=55.5
Q ss_pred EEEEEeccCCCeEEEEECCEEeecCCcEEE--E---ecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139 472 FTVQVEGIPTPKVSWYKDGFEIFSSRRQRI--V---TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540 (1101)
Q Consensus 472 L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~--~---~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l 540 (1101)
|.|.+.|.|.|.|+|+++|..+....+... . .....+.|.|.++...|+|.|+|.|.|..|....+..+
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~ 76 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA 76 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence 689999999999999999999976554321 1 11234589999999999999999999999987776544
No 112
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.81 E-value=2.9e-08 Score=86.51 Aligned_cols=78 Identities=24% Similarity=0.330 Sum_probs=63.1
Q ss_pred EEEEEEEEeecCCC--eeEEEECCeecCCCC---ceE-EEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 565 IIKLKVSMAGMPPP--TARWLHNGEPLTSGG---RYE-ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 565 ~~~l~c~~~g~p~~--~v~W~~~g~~l~~~~---~~~-~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
++.|.|.+.|.|.| .+.|+++|.++.... .+. .......++|.|.+++..|+|.|+|.|.|..|....++.|.|
T Consensus 2 ~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 81 (85)
T cd04970 2 SITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIV 81 (85)
T ss_pred cEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEE
Confidence 57899999999977 679999998875321 222 222234678999999999999999999999999999999999
Q ss_pred ecCC
Q psy8139 639 TDRP 642 (1101)
Q Consensus 639 ~~~P 642 (1101)
.++|
T Consensus 82 ~~pP 85 (85)
T cd04970 82 RGPP 85 (85)
T ss_pred ECCC
Confidence 9765
No 113
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.81 E-value=2.1e-08 Score=84.68 Aligned_cols=70 Identities=27% Similarity=0.515 Sum_probs=56.0
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeec--CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce-EEEEEEee
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFS--SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS-ITKARLRL 542 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~--~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~-~~s~~l~V 542 (1101)
++|.|.+.|.|.|.++|++++.++.. ..++.... + +.|.|.++...|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~-~--g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLR-S--GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcC-C--cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47899999999999999999988763 34444322 2 279999999999999999999999985 44566665
No 114
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.80 E-value=2.1e-08 Score=87.01 Aligned_cols=78 Identities=21% Similarity=0.369 Sum_probs=62.6
Q ss_pred EEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 463 ~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
.+..|+++.|.|.+.|.|.|.+.|++++..+....... .......|.|.++.++|+|.|+|.|.|..|....++.|.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 45679999999999999999999999988765433222 1223458999999999999999999999998777766654
No 115
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.80 E-value=5.8e-08 Score=85.16 Aligned_cols=79 Identities=22% Similarity=0.393 Sum_probs=64.9
Q ss_pred eEEeeCCEEEEEEEEeecCCCeeEEEE-CCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEE
Q psy8139 558 LLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFL 635 (1101)
Q Consensus 558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~ 635 (1101)
..+..|+++.|.|.+.|.|. .+.|++ ++..+..+.++.+...+....|.|.++...|.|.|+|.|.|..|.. ..+..
T Consensus 10 ~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~ 88 (92)
T cd05866 10 VELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVV 88 (92)
T ss_pred eEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEE
Confidence 46778999999999999998 999997 5777766667777655556799999999999999999999999975 34444
Q ss_pred EE
Q psy8139 636 VT 637 (1101)
Q Consensus 636 l~ 637 (1101)
|.
T Consensus 89 l~ 90 (92)
T cd05866 89 LE 90 (92)
T ss_pred EE
Confidence 43
No 116
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.79 E-value=4.7e-08 Score=83.65 Aligned_cols=71 Identities=24% Similarity=0.422 Sum_probs=57.4
Q ss_pred EEEEEeecCCCeeEEEECCeecCCCCceEEEe-------ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITH-------TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 568 l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-------~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
+.|.+.|.|.|.++|+++|..+..+....... ....+.|.|.++...|.|.|+|.|.|..|....+..+..
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 68999999999999999999997665432221 123567999999999999999999999999877766543
No 117
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.79 E-value=2.9e-08 Score=84.46 Aligned_cols=74 Identities=28% Similarity=0.496 Sum_probs=60.7
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~ 543 (1101)
+.|.|.+.|.|.|.+.|++++..+.......+...+....|.|.++...|.|.|+|.|.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 36899999999999999999998765433333333334489999999999999999999999999988888775
No 118
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.79 E-value=5.3e-08 Score=87.30 Aligned_cols=82 Identities=26% Similarity=0.408 Sum_probs=66.5
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC-----CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG-----GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~ 631 (1101)
+..+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+......+.|.|.+++..|.|.|.|.|.|..|...
T Consensus 10 ~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 10 NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 346788999999999999999999999988665432 234443344467899999999999999999999999988
Q ss_pred eEEEEEE
Q psy8139 632 ASFLVTV 638 (1101)
Q Consensus 632 ~s~~l~v 638 (1101)
.++.|.|
T Consensus 90 ~s~~l~v 96 (96)
T cd05732 90 QSMYLEV 96 (96)
T ss_pred EEEEEeC
Confidence 7776653
No 119
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.79 E-value=2.8e-08 Score=82.17 Aligned_cols=67 Identities=24% Similarity=0.503 Sum_probs=56.2
Q ss_pred EEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 567 ~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
.+.|.+.|.|.|.+.|+++|.++.....+ . ....|.|.++.+.|.|.|+|.|.|..|......++.+
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 58899999999999999999999764332 1 1457999999999999999999999998877666655
No 120
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.79 E-value=2.8e-08 Score=82.89 Aligned_cols=68 Identities=25% Similarity=0.431 Sum_probs=57.4
Q ss_pred EEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 567 ~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
.|.|.+.|.|.|.+.|+++|.++..+..+.. ...+|.|.++.+.|+|.|+|.|.|..|....+..+.+
T Consensus 2 ~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 2 RLPVKVKAYPPPEIQWYKNGKLISEKNRTKK----SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCCCEEEc----CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 5899999999999999999999876644322 2568999999999999999999999998777666655
No 121
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.78 E-value=3.1e-08 Score=87.24 Aligned_cols=76 Identities=26% Similarity=0.400 Sum_probs=57.9
Q ss_pred CCeEEEEEEEeccCCCeEEEEECC----EEeecCC--cEEEEe-------cCCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDG----FEIFSSR--RQRIVT-------DNDISTLIIHQAALMDEGEIKCTATNRAGH 533 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g----~~~~~~~--~~~~~~-------~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~ 533 (1101)
|+.++|.|.+.|.|.|.|+|++++ ..+.... ...... .+....|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999953 3222111 111111 122347999999999999999999999999
Q ss_pred eEEEEEEee
Q psy8139 534 SITKARLRL 542 (1101)
Q Consensus 534 ~~~s~~l~V 542 (1101)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 988888877
No 122
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.77 E-value=4.3e-08 Score=81.09 Aligned_cols=68 Identities=25% Similarity=0.442 Sum_probs=55.1
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV 636 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l 636 (1101)
|+.+.|.|.+.|.|.|.|.|.+++.++.....+.. ....|.|.++. +.|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 56789999999999999999999988865544322 24578888875 7899999999999987776654
No 123
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.76 E-value=5.4e-08 Score=82.05 Aligned_cols=70 Identities=23% Similarity=0.403 Sum_probs=56.6
Q ss_pred EEEEEeecCCCeeEEEECCeecCCCCceEE-----EeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEI-----THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT 637 (1101)
Q Consensus 568 l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~-----~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~ 637 (1101)
+.|.+.|.|.|+++|+++|.++..+..... ......++|.|.++...|.|.|+|.|.|..|....+..+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 679999999999999999999976554321 1122356899999999999999999999999877766554
No 124
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.76 E-value=4.6e-08 Score=86.28 Aligned_cols=77 Identities=25% Similarity=0.468 Sum_probs=62.9
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeec--------CCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPL--------TSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF 634 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~ 634 (1101)
|+.+.|.|.+.|.|.|.+.|+++|..+ ....++.+.. ...|.|.++...|+|.|.|.|.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 578899999999999999999987643 1223444332 35799999999999999999999999999999
Q ss_pred EEEEecCC
Q psy8139 635 LVTVTDRP 642 (1101)
Q Consensus 635 ~l~v~~~P 642 (1101)
.|.|.+..
T Consensus 78 ~l~V~~~~ 85 (90)
T cd05726 78 YLEVTDVI 85 (90)
T ss_pred EEEEeecc
Confidence 99998654
No 125
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.76 E-value=3.6e-08 Score=82.42 Aligned_cols=69 Identities=26% Similarity=0.445 Sum_probs=57.1
Q ss_pred EEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 567 ~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
.|.|.+.|.|.|.+.|++++..+..+. ... .....+|.|.++.+.|.|.|+|.|.|..|....+..|.|
T Consensus 2 ~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 2 VLECIAEGLPTPEVHWDRIDGPLSPNR-TKK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred EEEEEeeEecCCeEEEEECCcCCCCCc-eeE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 589999999999999999988775432 221 223678999999999999999999999999888777765
No 126
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.75 E-value=3.7e-08 Score=82.64 Aligned_cols=70 Identities=33% Similarity=0.551 Sum_probs=56.6
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEee
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V 542 (1101)
+.|.|.+.|.|.|.+.|++++..+... .... ......|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC-ceeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 468999999999999999998876433 2222 222348999999999999999999999998888777766
No 127
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.74 E-value=8.3e-08 Score=84.86 Aligned_cols=82 Identities=28% Similarity=0.477 Sum_probs=61.6
Q ss_pred CeeeecCceeEEcc---CCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecC-CCCCEEEEEEEE
Q psy8139 453 PSFIRALHDTTALE---DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAA-LMDEGEIKCTAT 528 (1101)
Q Consensus 453 P~~~~~p~~~~v~~---g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~-~~d~g~Y~C~a~ 528 (1101)
|.|...|.++.+.. |.++.|.|.+.|.|.|.++|++++..+...........++ .|.|.++. ..|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence 56666777766544 4679999999999999999999998874322222222222 78998887 489999999999
Q ss_pred eCCCceEE
Q psy8139 529 NRAGHSIT 536 (1101)
Q Consensus 529 n~~g~~~~ 536 (1101)
|..|...+
T Consensus 80 N~~G~~~S 87 (91)
T cd04967 80 NIVGTVLS 87 (91)
T ss_pred cCCCEEEe
Confidence 99997654
No 128
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.73 E-value=6.8e-08 Score=82.18 Aligned_cols=71 Identities=27% Similarity=0.629 Sum_probs=56.0
Q ss_pred EEEEEEEeecCCCeeEEEECCeecCCCC-ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee--EEEEEE
Q psy8139 566 IKLKVSMAGMPPPTARWLHNGEPLTSGG-RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA--SFLVTV 638 (1101)
Q Consensus 566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~--s~~l~v 638 (1101)
++|.|.+.|.|.|.+.|+++|.++..+. .+.+. .....|.|.++.+.|.|.|.|.|.|..|.... ...|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 3689999999999999999999886543 33332 23468999999999999999999999997643 444444
No 129
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.73 E-value=3.5e-08 Score=87.21 Aligned_cols=81 Identities=23% Similarity=0.286 Sum_probs=63.9
Q ss_pred ceeEEccCCeEEEEEEEec-----cCCCeEEEEECCEEeecC--CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139 460 HDTTALEDEKVEFTVQVEG-----IPTPKVSWYKDGFEIFSS--RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG 532 (1101)
Q Consensus 460 ~~~~v~~g~~v~L~C~~~g-----~p~~~v~W~~~g~~~~~~--~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g 532 (1101)
.+..+.+|+++.|.|.+.+ .|.+.|.|++++..+... ...++...+ ..|.|.++..+|+|.|+|.+.|..|
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQK--DLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecC--CeEEEccCCcccCeEEEEEEcCCCc
Confidence 4566789999999999998 688999999998654321 122222223 3899999999999999999999999
Q ss_pred ceEEEEEEee
Q psy8139 533 HSITKARLRL 542 (1101)
Q Consensus 533 ~~~~s~~l~V 542 (1101)
....++.|.|
T Consensus 85 ~~~~~~~L~v 94 (94)
T cd05756 85 CMKVSISLTV 94 (94)
T ss_pred cEEEEEEEEC
Confidence 9888877765
No 130
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.72 E-value=7.5e-08 Score=82.39 Aligned_cols=76 Identities=24% Similarity=0.372 Sum_probs=63.1
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV 636 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l 636 (1101)
...+..|+.+.|.|.+.+. .+.+.|+++|.++..+.++.+. ..+|.|.++.+.|+|.|+|.|.|..|.......+
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 3467789999999999986 5789999999999876666543 3479999999999999999999999887666555
Q ss_pred E
Q psy8139 637 T 637 (1101)
Q Consensus 637 ~ 637 (1101)
.
T Consensus 78 ~ 78 (79)
T cd04973 78 N 78 (79)
T ss_pred e
Confidence 4
No 131
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.71 E-value=9.2e-08 Score=81.36 Aligned_cols=73 Identities=29% Similarity=0.404 Sum_probs=61.4
Q ss_pred EEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639 (1101)
Q Consensus 567 ~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~ 639 (1101)
.|.|.+.|.|.|.+.|++++..+..+....+...+....|.|.++...|.|.|+|.|.|..|.....+.|.|.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 5899999999999999999998875543333334445679999999999999999999999999988888875
No 132
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.71 E-value=4.4e-08 Score=83.38 Aligned_cols=67 Identities=28% Similarity=0.527 Sum_probs=51.1
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCC----CCCEEEEEEEEeCCCceEE
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAAL----MDEGEIKCTATNRAGHSIT 536 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~----~d~g~Y~C~a~n~~g~~~~ 536 (1101)
++|.|.+.|.|.|.++|++++..+.......+......+.|.|.++.. .|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 478999999999999999999987543222222222334889998864 6899999999999997654
No 133
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.70 E-value=7.6e-08 Score=81.75 Aligned_cols=69 Identities=29% Similarity=0.524 Sum_probs=56.1
Q ss_pred EEEEEEEec-cCCCeEEEEECCEEeecCCcEE---EEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139 470 VEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQR---IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538 (1101)
Q Consensus 470 v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~---~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~ 538 (1101)
+.|.|.+.| .|.|.+.|+++|..+....... +........|.|.++...|.|.|+|.|.|..|....++
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 368999999 9999999999999886544322 33334456899999999999999999999999876654
No 134
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.69 E-value=6.4e-08 Score=82.15 Aligned_cols=66 Identities=24% Similarity=0.469 Sum_probs=50.1
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecC--CcEEEEecCCeeEEEEeecCCC----CCEEEEEEEEeCCCceEEE
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSS--RRQRIVTDNDISTLIIHQAALM----DEGEIKCTATNRAGHSITK 537 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~--~~~~~~~~~~~~~l~I~~l~~~----d~g~Y~C~a~n~~g~~~~s 537 (1101)
+.|.|.+.|.|.|.++|+++|..+... ..+.+...+ ++|.|..+... |+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~--g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNT--GTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCC--ceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 468999999999999999999887433 233332223 37888877653 7899999999999986653
No 135
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.69 E-value=1.1e-07 Score=83.78 Aligned_cols=76 Identities=24% Similarity=0.370 Sum_probs=58.3
Q ss_pred CCEEEEEEEEeecCCCeeEEEEC----CeecCCCCc--eEEEee-------cceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHN----GEPLTSGGR--YEITHT-------DRYLNLRISDARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~----g~~l~~~~~--~~~~~~-------~~~~sl~i~~l~~~~~y~y~c~A~N~~G~ 629 (1101)
|..+.|.|.+.|.|.|.++|.++ |..+..+.. ..+... .....|.|.+++..|.|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 56789999999999999999984 444432221 111111 12368999999999999999999999999
Q ss_pred ceeEEEEEE
Q psy8139 630 DVASFLVTV 638 (1101)
Q Consensus 630 ~~~s~~l~v 638 (1101)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888888876
No 136
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.69 E-value=7.8e-08 Score=83.08 Aligned_cols=76 Identities=29% Similarity=0.453 Sum_probs=56.2
Q ss_pred CCeEEEEEEEeccCCCeEEEEECCE---E-eecCCcE-EEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEe
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDGF---E-IFSSRRQ-RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g~---~-~~~~~~~-~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~ 541 (1101)
|+++.|.|.+.|.|.|.++|++++. . +...... ..........|.|.++...|+|.|.|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 6789999999999999999999732 1 1111110 001111234899999999999999999999999988887776
Q ss_pred e
Q psy8139 542 L 542 (1101)
Q Consensus 542 V 542 (1101)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
No 137
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.69 E-value=6.9e-08 Score=81.88 Aligned_cols=70 Identities=24% Similarity=0.364 Sum_probs=55.7
Q ss_pred EEEEEEeecCCCeeEEEECCeecC---CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 567 KLKVSMAGMPPPTARWLHNGEPLT---SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 567 ~l~c~~~g~p~~~v~W~~~g~~l~---~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
.|.|.+.|.|.|.++|++++.... ...++.+. ...+.|.|.++.+.|.|.|.|.|.|..|....++.|.|
T Consensus 2 ~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 2 RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM--PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred EeEeecccccCCEEEEEeCCCccCCcccccceEEe--cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 589999999999999999876432 12233332 23457999999999999999999999999888887776
No 138
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.67 E-value=7.8e-08 Score=79.98 Aligned_cols=69 Identities=30% Similarity=0.489 Sum_probs=56.7
Q ss_pred EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
+.|.|.+.|.|.|.+.|++++..+... ++.+. ....|.|.++.+.|.|.|+|.|.|..|....+..|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 368999999999999999998766543 34443 2557999999999999999999999999887777654
No 139
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.67 E-value=1.4e-07 Score=82.95 Aligned_cols=78 Identities=21% Similarity=0.404 Sum_probs=63.2
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee-EEE
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA-SFL 635 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~-s~~ 635 (1101)
++.+..|+++.|.|.+.|. .|.+.|++++..+... ++.+. ....+|.|.++...|.|.|.|.|.|..|...+ ...
T Consensus 12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence 4577889999999999999 9999999999887643 33332 33568999999999999999999999997544 555
Q ss_pred EEE
Q psy8139 636 VTV 638 (1101)
Q Consensus 636 l~v 638 (1101)
|.|
T Consensus 88 L~V 90 (91)
T cd05740 88 LNV 90 (91)
T ss_pred EEe
Confidence 554
No 140
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.67 E-value=3.4e-07 Score=88.27 Aligned_cols=116 Identities=16% Similarity=0.275 Sum_probs=80.2
Q ss_pred EEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeec-CC-CeeEEEECC
Q psy8139 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PP-PTARWLHNG 586 (1101)
Q Consensus 509 ~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~-p~-~~v~W~~~g 586 (1101)
+|.|.+++..|+|.|.|.+.+..|.......|.|..+|.+...+. ......|..+.|.|.+.|. |. +.|.|+++|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~---~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g 78 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLE---KLVSMIEEPQTLICHIAGYYPLDVQVEWTREP 78 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCC---CceeecCCcEEEEEEECCCCCCCeEEEEEECC
Confidence 689999999999999999999888888889999999988765543 1233368889999999996 43 589999987
Q ss_pred eecCC------CCceE-EE--eecc---eEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139 587 EPLTS------GGRYE-IT--HTDR---YLNLRISDARRADRGEYQAHGVNSL 627 (1101)
Q Consensus 587 ~~l~~------~~~~~-~~--~~~~---~~sl~i~~l~~~~~y~y~c~A~N~~ 627 (1101)
..... +.... .. .++. .+.|.+..-...+...|+|.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 79 PGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 54211 11000 10 1111 2345555444345678999997654
No 141
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.67 E-value=1.2e-07 Score=84.06 Aligned_cols=69 Identities=32% Similarity=0.492 Sum_probs=55.2
Q ss_pred eCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCC-CCCCeEEEEEEEeCCCCcee
Q psy8139 562 MGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDAR-RADRGEYQAHGVNSLGEDVA 632 (1101)
Q Consensus 562 ~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~-~~~~y~y~c~A~N~~G~~~~ 632 (1101)
.|..+.|.|.+.|.|.|.++|+++|..+........... .++|.|.++. +.|.|.|+|.|.|..|...+
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~--~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLI--DGNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEee--CCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 378999999999999999999999998865433333222 3578898874 68999999999999997643
No 142
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.66 E-value=1.2e-07 Score=79.92 Aligned_cols=69 Identities=26% Similarity=0.471 Sum_probs=55.8
Q ss_pred EEEEEEeecCCCeeEEEECCeecCC--CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEEEE
Q psy8139 567 KLKVSMAGMPPPTARWLHNGEPLTS--GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLVTV 638 (1101)
Q Consensus 567 ~l~c~~~g~p~~~v~W~~~g~~l~~--~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l~v 638 (1101)
+|.|.+.|.|.|.+.|++++.++.. ..++... ..+.|.|.+++..|.|.|+|.|.|..|.. +..+.|.|
T Consensus 2 ~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 2 TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL---RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EEEEEEeEecCCEEEEEECCEECccCCCCCEEEc---CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 6899999999999999999988863 3344432 24579999999999999999999999974 45666655
No 143
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.65 E-value=1.1e-07 Score=80.71 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=55.0
Q ss_pred CeeeecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR 530 (1101)
Q Consensus 453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~ 530 (1101)
|.+...|....+.+|++++|.|.+.+.|.+ .+.|+++|..+.. ....|.|.++ .+|+|.|+|.|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 345566777889999999999999998764 6999999987732 1237999999 99999999999874
No 144
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.65 E-value=1.4e-07 Score=78.08 Aligned_cols=65 Identities=22% Similarity=0.336 Sum_probs=51.2
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEE
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK 537 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s 537 (1101)
+.|.|.+.|.|.|.+.|+++|.++...... ....+ .+|.|.++..+|+|.|+|.|.|........
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~-~~~~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~ 65 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSR-YHVDG--YSLVIKDVTEEDAGIYTILLGIKQYNLFKN 65 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcE-EEeCC--CEEEECcCCHHHCEEEEEEEEccccceEee
Confidence 368999999999999999999987654222 22233 379999999999999999999986554443
No 145
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.64 E-value=2.6e-07 Score=79.49 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=56.7
Q ss_pred cCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139 458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA 531 (1101)
Q Consensus 458 ~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~ 531 (1101)
.|.+..+..|+++.|.|.+.+ |.+.++|+++|.++...........+ .|.|.+++..|+|.|+|.|.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~---~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRD---GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECC---cEEEeCCCHHHCEEEEEEEEecc
Confidence 366788999999999999865 67899999999998765322233333 69999999999999999999864
No 146
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.64 E-value=1.6e-07 Score=81.33 Aligned_cols=77 Identities=29% Similarity=0.492 Sum_probs=61.8
Q ss_pred EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139 559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT 637 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~ 637 (1101)
....|+.+.|.|.+.|.|.|.+.|++++..+....... ......+|.|.++.+.|.|.|+|.|.|..|....+..|.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 45569999999999999999999999998775433222 222357899999999999999999999999876666554
No 147
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.63 E-value=1.7e-07 Score=79.28 Aligned_cols=73 Identities=22% Similarity=0.410 Sum_probs=58.4
Q ss_pred CCEEEEEEEEeecCCCeeEEEE-CCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLH-NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
|+.+.|.|.+.|.|.|.+.|.+ ++..+....++.... ..+|.|.++...|.|.|+|.|.|..|..+....|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 5778999999999999999997 666665544443322 457999999999999999999999998777766653
No 148
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.63 E-value=2.8e-07 Score=83.39 Aligned_cols=82 Identities=30% Similarity=0.508 Sum_probs=58.8
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC----C-ceEEEeecceEEEEEc--cCCCCCCeEEEEEEEeCCCC
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG----G-RYEITHTDRYLNLRIS--DARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~----~-~~~~~~~~~~~sl~i~--~l~~~~~y~y~c~A~N~~G~ 629 (1101)
...+..|+.+.|.|.+.|.|.|.+.|+++|..+... . .......+....+.+. .+...|.|.|+|.|.|..|.
T Consensus 10 ~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~ 89 (100)
T cd07693 10 DLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGE 89 (100)
T ss_pred eeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccc
Confidence 457888999999999999999999999999988651 1 1222222222222332 23688999999999999998
Q ss_pred -ceeEEEEEE
Q psy8139 630 -DVASFLVTV 638 (1101)
Q Consensus 630 -~~~s~~l~v 638 (1101)
.+..+.|.|
T Consensus 90 ~~s~~~~l~v 99 (100)
T cd07693 90 AVSRNASLEV 99 (100)
T ss_pred eecceEEEEe
Confidence 455666554
No 149
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.63 E-value=1.6e-07 Score=79.64 Aligned_cols=66 Identities=24% Similarity=0.438 Sum_probs=50.0
Q ss_pred EEEEEEEeccCCCeEEEEECCEEee--cCCcEEEEecCCeeEEEEeecCC----CCCEEEEEEEEeCCCceEEE
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIF--SSRRQRIVTDNDISTLIIHQAAL----MDEGEIKCTATNRAGHSITK 537 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~--~~~~~~~~~~~~~~~l~I~~l~~----~d~g~Y~C~a~n~~g~~~~s 537 (1101)
+.|.|.+.|.|.|.++|+++|..+. ...++.+...+ +.|.|.++.. .|+|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~--~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRS--GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCC--ceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 3689999999999999999998764 23344433233 4888887642 36999999999999976654
No 150
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.62 E-value=4.8e-07 Score=81.21 Aligned_cols=80 Identities=25% Similarity=0.450 Sum_probs=63.8
Q ss_pred CeEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCC--CceEEEee----cceEEEEEccCCCCC-CeEEEEEEEeCCC
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSG--GRYEITHT----DRYLNLRISDARRAD-RGEYQAHGVNSLG 628 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~--~~~~~~~~----~~~~sl~i~~l~~~~-~y~y~c~A~N~~G 628 (1101)
...+..|..+.|.|.+.|.|.| .+.|.+++..+... .++.+... +..++|.|.++...+ .|.|.|.|.|..|
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 10 TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence 3467889999999999999998 69999999888643 45555432 223689999999955 8999999999999
Q ss_pred CceeEEEE
Q psy8139 629 EDVASFLV 636 (1101)
Q Consensus 629 ~~~~s~~l 636 (1101)
.....+.|
T Consensus 90 ~~~~~~~L 97 (98)
T cd05758 90 SGTAIISL 97 (98)
T ss_pred cccEEEEe
Confidence 87776554
No 151
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.62 E-value=1.9e-07 Score=82.22 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=57.4
Q ss_pred CCEEEEEEEEeecCCCeeEEEECC----eecCCCC--ceEEEe-------ecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNG----EPLTSGG--RYEITH-------TDRYLNLRISDARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g----~~l~~~~--~~~~~~-------~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~ 629 (1101)
|+.+.|.|.+.|.|.|.|+|.+++ ..+.... ...... .+....|.|.++.+.|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 567899999999999999999853 3322111 111111 122357999999999999999999999999
Q ss_pred ceeEEEEEE
Q psy8139 630 DVASFLVTV 638 (1101)
Q Consensus 630 ~~~s~~l~v 638 (1101)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 988888876
No 152
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.61 E-value=1.6e-07 Score=78.78 Aligned_cols=70 Identities=29% Similarity=0.511 Sum_probs=56.8
Q ss_pred EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
+.|.|.+.|.|.|.+.|++++..+..+. .. .......|.|.++...|.|.|+|.|.|..|....+..+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-TK--FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-ee--EecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 3589999999999999999988775432 21 2223568999999999999999999999998887777765
No 153
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.60 E-value=3.6e-07 Score=81.04 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=61.8
Q ss_pred CceeEEccCCeEEEEEEEeccCCCeEEEEECCE--------EeecCCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139 459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGF--------EIFSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATN 529 (1101)
Q Consensus 459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~--------~~~~~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n 529 (1101)
+.++.+.+|++++|.|.+.+.|.+.+.|++.+. ......++.+... ....+|.|.++..+|+|.|.|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 457789999999999999999999999986322 1223345554332 3456899999999999999999998
Q ss_pred CCCceEEEEEEee
Q psy8139 530 RAGHSITKARLRL 542 (1101)
Q Consensus 530 ~~g~~~~s~~l~V 542 (1101)
..+ ....+.|.|
T Consensus 84 ~~~-~~~~~~l~v 95 (95)
T cd07701 84 MPV-KTSKAYLTV 95 (95)
T ss_pred ecC-ccEEEEEEC
Confidence 533 355566654
No 154
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.59 E-value=1.8e-07 Score=81.33 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=58.2
Q ss_pred CCeEEEEEEEecc--CCCeEEEEECCEEeecCC----cEE-EEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139 467 DEKVEFTVQVEGI--PTPKVSWYKDGFEIFSSR----RQR-IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR 539 (1101)
Q Consensus 467 g~~v~L~C~~~g~--p~~~v~W~~~g~~~~~~~----~~~-~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~ 539 (1101)
|+++.|.|.+.+. |.+.+.|.+++..+.... ... .......+.|+|.+++..|+|.|+|.|.|..|....++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6889999999999 888999998776443211 000 111123458999999999999999999999999888887
Q ss_pred Eee
Q psy8139 540 LRL 542 (1101)
Q Consensus 540 l~V 542 (1101)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 155
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.59 E-value=2.1e-07 Score=78.96 Aligned_cols=68 Identities=28% Similarity=0.475 Sum_probs=55.7
Q ss_pred EEEEEEee-cCCCeeEEEECCeecCCCCceE---EEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139 567 KLKVSMAG-MPPPTARWLHNGEPLTSGGRYE---ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF 634 (1101)
Q Consensus 567 ~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~---~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~ 634 (1101)
.|.|.+.| .|.|.+.|+++|..+....... +........|.|.++.+.|.|.|+|.|.|..|....++
T Consensus 2 ~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 2 VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred EEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 58999999 9999999999999887544322 33334467899999999999999999999999876654
No 156
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.58 E-value=3.6e-07 Score=79.95 Aligned_cols=73 Identities=34% Similarity=0.582 Sum_probs=60.4
Q ss_pred CeEEeeCCEEEEEEEE-eecCCCeeEEEECCeecCC-CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139 557 GLLFEMGEIIKLKVSM-AGMPPPTARWLHNGEPLTS-GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA 632 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~-~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~ 632 (1101)
...+..|+++.|.|.+ .|.|.|.+.|+++|..+.. ..++.+.. .++|.|.++...|.|.|+|.|.|..|....
T Consensus 5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 4577889999999998 7899999999999998875 33444332 458999999999999999999999997543
No 157
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.58 E-value=1.6e-07 Score=79.96 Aligned_cols=67 Identities=30% Similarity=0.468 Sum_probs=51.6
Q ss_pred EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCC----CCCeEEEEEEEeCCCCcee
Q psy8139 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARR----ADRGEYQAHGVNSLGEDVA 632 (1101)
Q Consensus 566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~----~~~y~y~c~A~N~~G~~~~ 632 (1101)
+.|.|.+.|.|.|.++|+++|.++.......+......+.|.|.++.. .|+|.|+|.|.|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 368999999999999999999988643322233333467888888754 6899999999999997543
No 158
>KOG0613|consensus
Probab=98.58 E-value=1.1e-06 Score=106.85 Aligned_cols=310 Identities=15% Similarity=0.146 Sum_probs=183.1
Q ss_pred hhhhhhhhcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEE
Q psy8139 304 KQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGY 383 (1101)
Q Consensus 304 ~~~~l~i~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y 383 (1101)
..+.+.+..-...+.++|.....+..+ -...........++.+|++-.. ..+....+...|..+..+++..+..|
T Consensus 100 l~~t~~v~~~~ad~~~~~~~e~~~~i~-~~~~~~v~~~e~pd~~~~~~~s----v~~~~~~v~~~~~~~~~d~~~k~~~~ 174 (1205)
T KOG0613|consen 100 LGSTWAVGDEYADDRPIHLVERKALID-VVPSPEVCQQEKPDPPPSNRES----VLVHRARVLPAWRPPREDGGRKREEY 174 (1205)
T ss_pred cccccccccccccccccccccccccCC-ccccchhhhhcCCCCCCCCccc----eeecCceecccccCCccCccceeecc
Confidence 344445555555666666655444444 2222222233333333333222 25567889999999999999999999
Q ss_pred EEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeE
Q psy8139 384 LVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 463 (1101)
Q Consensus 384 ~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~ 463 (1101)
.++.+..+...|..............+.. +...+.+.|.+.+..+...+. . . ...+.+...+....
T Consensus 175 iie~~~~g~s~~~~~l~~~~~~s~~~~a~--~e~~v~~v~s~gqp~~~~~~~-------~--~---g~~i~~~~~~~~s~ 240 (1205)
T KOG0613|consen 175 IIERRQAGRSPWLKRLTQPTDDSTDTDAH--YESRVRAVVSAGQPEPLERWE-------I--L---GELIAPGSAPSMSV 240 (1205)
T ss_pred eEEEEeccCCCcccccccccCCcceeccc--cceeEEEEEecCCCccchhhh-------h--c---ccccCCCCcccccc
Confidence 99999988888876654333333332222 444444555444333322211 0 0 12222334455566
Q ss_pred EccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139 464 ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543 (1101)
Q Consensus 464 v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~ 543 (1101)
+..++...+.|.+.+.+.+.+.|+.+....... ..+..+..|.+-.+...+.|+|...+..|.........+.
T Consensus 241 t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~ 313 (1205)
T KOG0613|consen 241 TLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAP 313 (1205)
T ss_pred ccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCcccceeeeEEee
Confidence 778889999999999988888777654332211 1222366677777777778888877766655443222211
Q ss_pred c----------------CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCe-eEEEECCeecCCCC--ceEEEeecceE
Q psy8139 544 A----------------PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT-ARWLHNGEPLTSGG--RYEITHTDRYL 604 (1101)
Q Consensus 544 ~----------------~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~-v~W~~~g~~l~~~~--~~~~~~~~~~~ 604 (1101)
. ++...........+....+..+.+.|...+.+.+. +.|++++.....+. ...........
T Consensus 314 i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~ 393 (1205)
T KOG0613|consen 314 IGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSH 393 (1205)
T ss_pred ccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCc
Confidence 1 12111111122223444566788999999888776 99998776654433 23333344466
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe
Q psy8139 605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639 (1101)
Q Consensus 605 sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~ 639 (1101)
.+.+.++.++..|.+.|.|.|..|........++.
T Consensus 394 ~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs 428 (1205)
T KOG0613|consen 394 TYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVS 428 (1205)
T ss_pred chhhhhcCcccccccccceeccCCcccccchhhcc
Confidence 78889999999999999999999976554444443
No 159
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.58 E-value=3.6e-07 Score=81.12 Aligned_cols=66 Identities=32% Similarity=0.508 Sum_probs=53.4
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCCC--ceEEEeecceEEEEEccCC-CCCCeEEEEEEEeCCCCcee
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGG--RYEITHTDRYLNLRISDAR-RADRGEYQAHGVNSLGEDVA 632 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~sl~i~~l~-~~~~y~y~c~A~N~~G~~~~ 632 (1101)
|+.+.|.|.+.|.|.|.++|+++|..+.... .+.+. .++|.|.++. ..|.|.|+|.|.|..|...+
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV----AGNLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE----CCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 4689999999999999999999999886432 33332 4578888765 58999999999999997644
No 160
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.58 E-value=7.6e-07 Score=78.65 Aligned_cols=81 Identities=20% Similarity=0.291 Sum_probs=60.1
Q ss_pred ceeEEccCCeEEEEEEEeccCCCeEEEEECCEEe--------ecCCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI--------FSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNR 530 (1101)
Q Consensus 460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~--------~~~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n~ 530 (1101)
.+..+..|+++.|.|.+.+.|.+.+.|++++..+ ....++.+... ....+|.|.++..+|+|.|+|.+.+.
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 4678899999999999999999999999876532 12234443332 23569999999999999999999883
Q ss_pred CCceEEEEEEe
Q psy8139 531 AGHSITKARLR 541 (1101)
Q Consensus 531 ~g~~~~s~~l~ 541 (1101)
......+.|.
T Consensus 85 -~~~~~~~~~~ 94 (95)
T cd05882 85 -PVRTAKATVT 94 (95)
T ss_pred -ccccEEEEEE
Confidence 3334444443
No 161
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.58 E-value=2.4e-07 Score=79.41 Aligned_cols=69 Identities=22% Similarity=0.417 Sum_probs=51.2
Q ss_pred EEEEEEEeccCCCeEEEEECCEEee--------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE-EEEE
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIF--------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARL 540 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~--------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~-s~~l 540 (1101)
++|.|.+.|.|.|.++|++++.... ...++.+... .+|.|.++...|+|.|.|.|.|..|...+ ++.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 4799999999999999999643211 2233333222 38999999999999999999999997643 4444
Q ss_pred e
Q psy8139 541 R 541 (1101)
Q Consensus 541 ~ 541 (1101)
.
T Consensus 78 ~ 78 (79)
T cd05734 78 T 78 (79)
T ss_pred e
Confidence 4
No 162
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.57 E-value=7.9e-07 Score=78.37 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=68.3
Q ss_pred CCeeeecCceeEEccCCeEEEEEEEeccCCC-eEEEEECCEEeec--CCcEEEEec----CCeeEEEEeecCCCC-CEEE
Q psy8139 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFS--SRRQRIVTD----NDISTLIIHQAALMD-EGEI 523 (1101)
Q Consensus 452 ~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-~v~W~~~g~~~~~--~~~~~~~~~----~~~~~l~I~~l~~~d-~g~Y 523 (1101)
||.+ .......+..|+++.|.|.+.+.|.| .|.|...+..+.. ..++.+... +..+.|+|.++...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 4544 56677788999999999999888887 5788877766544 356666543 467899999998766 7999
Q ss_pred EEEEEeCCCceEEEEEE
Q psy8139 524 KCTATNRAGHSITKARL 540 (1101)
Q Consensus 524 ~C~a~n~~g~~~~s~~l 540 (1101)
.|.|.|..|.......|
T Consensus 81 ~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 81 NCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEeCCccceEEEEe
Confidence 99999999988766554
No 163
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.57 E-value=2.7e-07 Score=78.28 Aligned_cols=67 Identities=25% Similarity=0.381 Sum_probs=49.9
Q ss_pred EEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCC----CCeEEEEEEEeCCCCcee
Q psy8139 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRA----DRGEYQAHGVNSLGEDVA 632 (1101)
Q Consensus 566 ~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~----~~y~y~c~A~N~~G~~~~ 632 (1101)
+.|.|.+.|.|.|+++|+++|.++.......+......++|.|..+... |.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 3689999999999999999999874332222222233567888777643 689999999999997544
No 164
>KOG0520|consensus
Probab=98.55 E-value=2.5e-07 Score=109.73 Aligned_cols=148 Identities=22% Similarity=0.287 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------H--------------HHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy8139 12 RAKTILIQTLWRSKLAMRRDEREFCM-------------I--------------RSKTIVIQKYFRGYLLMRKERQEYLA 64 (1101)
Q Consensus 12 ~~aa~~iQ~~~Rg~~~r~~~~~~~~~-------------~--------------~~aa~~IQ~~~Rg~~~r~~~r~~~~~ 64 (1101)
..||.+||+.+|..-.+++..++... + -.||..||..||||+ .|+.|+.
T Consensus 756 a~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~~~~~r~~~~aa~~iq~~f~~yk----~r~~~l~ 831 (975)
T KOG0520|consen 756 AQAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFSMCDDRSDPAAASRIQKKFRGYK----QRKEFLS 831 (975)
T ss_pred HHHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchhcCccccchhHHHHhhhhhhhHH----hhhhhcc
Confidence 45777888888877555433222110 0 136677888888888 8888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 65 MKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRW 144 (1101)
Q Consensus 65 ~~~aa~~iQ~~~R~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~~R~~~~~~~~r~~~~~~~~aa~~iQ~~~ 144 (1101)
.+.-+++||+.+||+..|+.+++...... ..++.-.++..+|+.+||+ +.+....+...+++.||..+
T Consensus 832 tr~p~v~iqa~~rg~q~r~dy~ki~wSv~--------~lek~~lrwR~k~~g~Rgf----k~~~~~e~~~~a~t~~e~~y 899 (975)
T KOG0520|consen 832 TRQPIVKIQAAVRGYQVRKDYRKITWSVG--------VLEKLILRWRRKGKGFRGF----KGRALFEEQETAATVIEDCY 899 (975)
T ss_pred cCCccccchhhhhchhHhhhhheechhhh--------HHHHHHHHHHHhhhhhccc----ccccchhccccccchHHHHH
Confidence 88888888888888888766654433211 1223334455556666633 44444444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 145 RANLTMRKQRAHFLLMKQKASVIQQWYRNTKLM 177 (1101)
Q Consensus 145 R~~~~r~~~r~~~~~~~~aa~~IQ~~~R~~~~r 177 (1101)
|-|..-+ +..+.++.+|++.||+.+|.+.++
T Consensus 900 d~yKq~~--~~~~~r~~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 900 DFYKQLR--KQTEERLTRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhcCHHHH
Confidence 5544221 123344555555555555555443
No 165
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.55 E-value=7.2e-07 Score=78.82 Aligned_cols=79 Identities=23% Similarity=0.345 Sum_probs=60.0
Q ss_pred eEEeeCCEEEEEEEEeecCCCeeEEEE-CCeecCCCCceEEEe-ecceEEEEEccCCCCCCeEEEEEEEeCCCC-ceeEE
Q psy8139 558 LLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLTSGGRYEITH-TDRYLNLRISDARRADRGEYQAHGVNSLGE-DVASF 634 (1101)
Q Consensus 558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~-~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~-~~~s~ 634 (1101)
..+..|+.+.|.|.+.|.| +.+.|++ ++..+....++.+.. .....+|+|.++.+.|.|.|+|.|.|..|. ...++
T Consensus 10 ~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv 88 (92)
T cd04977 10 GEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATV 88 (92)
T ss_pred EEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEE
Confidence 4678899999999999997 4999997 566555434443332 334578999999999999999999999664 45555
Q ss_pred EEE
Q psy8139 635 LVT 637 (1101)
Q Consensus 635 ~l~ 637 (1101)
.|.
T Consensus 89 ~l~ 91 (92)
T cd04977 89 NLK 91 (92)
T ss_pred EEE
Confidence 543
No 166
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.55 E-value=1.1e-06 Score=76.72 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=63.9
Q ss_pred eEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEE-ecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV-TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540 (1101)
Q Consensus 462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~-~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l 540 (1101)
+.+..|+.+.|.|.+.+.|.+.+.|++++..+......... .......|.|.++..+|.|.|.|.+.|..|....+..|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 34667999999999999999999999999877644333222 12334579999999999999999999999987777666
Q ss_pred ee
Q psy8139 541 RL 542 (1101)
Q Consensus 541 ~V 542 (1101)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 53
No 167
>KOG2128|consensus
Probab=98.54 E-value=2.5e-05 Score=95.50 Aligned_cols=133 Identities=17% Similarity=0.076 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 139 SVQQRWRANLTMRKQRAHFLLMKQ-KASVIQQWYRNTKLMRLEASYL---HELKAATITIQRRYRANVAMRTQRERYVAL 214 (1101)
Q Consensus 139 ~iQ~~~R~~~~r~~~r~~~~~~~~-aa~~IQ~~~R~~~~rr~~~~~~---~~~~~aa~~iQ~~~Rg~~~~~~~r~~~~~~ 214 (1101)
..|+..||...+...-..+-..-. -..++|+..||+..|..++..+ .........||++|||++.---........
T Consensus 512 s~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~ 591 (1401)
T KOG2128|consen 512 SLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSA 591 (1401)
T ss_pred hHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHh
Confidence 355555555544333222222111 1233466677766665443332 223346666777777666311223334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 215 RTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRK 294 (1101)
Q Consensus 215 ~~a~i~iQ~~~Rg~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQs~~r~~~~r~ 294 (1101)
...++.+|++.||+++|+.+.+..+ .++....++++||+++|.+..|+
T Consensus 592 ~~evv~~qs~~R~~lsrk~~~~~~q--------------------------------~~~~~~~~~i~iqs~~r~f~~r~ 639 (1401)
T KOG2128|consen 592 KKEVVKFQSLTRGALSRKKYSRKLQ--------------------------------YFKDNMTKIIKIQSKIRKFPNRK 639 (1401)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHH--------------------------------HHHHhhhhHHHHHHHHHhcccch
Confidence 5566777777777776666554322 24455678999999999999999
Q ss_pred hHHHHHHHh
Q psy8139 295 KFADIIEQK 303 (1101)
Q Consensus 295 ~~~~~~~~~ 303 (1101)
.|.++....
T Consensus 640 ~y~~L~~s~ 648 (1401)
T KOG2128|consen 640 DYKLLFTSE 648 (1401)
T ss_pred HHHHHhcCC
Confidence 999887543
No 168
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.54 E-value=4.3e-07 Score=77.18 Aligned_cols=70 Identities=27% Similarity=0.511 Sum_probs=54.2
Q ss_pred EEEEEEEec-cCCCeEEEEECCEEeecC----CcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139 470 VEFTVQVEG-IPTPKVSWYKDGFEIFSS----RRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR 539 (1101)
Q Consensus 470 v~L~C~~~g-~p~~~v~W~~~g~~~~~~----~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~ 539 (1101)
+.|.|.+.+ .|.+.+.|+++|..+... .++.+......+.|.|.++...|+|.|+|.|.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 368999874 688899999999887532 1233333345568999999999999999999999998776653
No 169
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.54 E-value=3e-07 Score=79.38 Aligned_cols=76 Identities=25% Similarity=0.334 Sum_probs=55.7
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCe---e--cCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGE---P--LTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT 637 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~---~--l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~ 637 (1101)
|+.+.|.|.+.|.|.|.+.|++++. . +................|.|.++.+.|.|.|.|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 5678999999999999999998632 1 1111100000111246899999999999999999999999988877765
Q ss_pred E
Q psy8139 638 V 638 (1101)
Q Consensus 638 v 638 (1101)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 4
No 170
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.52 E-value=4e-07 Score=79.34 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=62.2
Q ss_pred ecCceeEEccCCeEEEEEEEec-cCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139 457 RALHDTTALEDEKVEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI 535 (1101)
Q Consensus 457 ~~p~~~~v~~g~~v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~ 535 (1101)
..|..+.+..|++++|.|.+.+ .|.+.+.|++++..+... .... .+.|.|.++.++|+|.|.|.|.|..|...
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----~~~~--~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR----AMDF--NGILTIRNVQLSDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc----cccc--CCEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence 3466778899999999999874 788899999988654321 1111 23899999999999999999999999888
Q ss_pred EEEEE
Q psy8139 536 TKARL 540 (1101)
Q Consensus 536 ~s~~l 540 (1101)
.++.|
T Consensus 80 ~~~~l 84 (85)
T cd05754 80 ATATL 84 (85)
T ss_pred EEEEE
Confidence 87665
No 171
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.52 E-value=1.9e-06 Score=83.06 Aligned_cols=116 Identities=14% Similarity=0.204 Sum_probs=74.9
Q ss_pred eEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEecc-CC-CeE
Q psy8139 407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PT-PKV 484 (1101)
Q Consensus 407 ~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~-p~-~~v 484 (1101)
+|.|.+++..|+|.|.|.+.+..|... ..+.+.+. .+|.+...+.......|..++|.|.+.|. |. +.|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~-----~~~~l~v~----~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i 72 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQ-----QIIQLSVS----EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQV 72 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCccee-----eEEEEEEe----cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEE
Confidence 689999999999999999988665543 33455543 56777666666555578999999999985 54 489
Q ss_pred EEEECCEEeec-----CC----cEEEEecCC---eeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139 485 SWYKDGFEIFS-----SR----RQRIVTDND---ISTLIIHQAALMDEGEIKCTATNRA 531 (1101)
Q Consensus 485 ~W~~~g~~~~~-----~~----~~~~~~~~~---~~~l~I~~l~~~d~g~Y~C~a~n~~ 531 (1101)
+|+++|..... .. ......++. .+.|.+..-...+...|+|.+.+..
T Consensus 73 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 73 EWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred EEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 99998754211 11 011111121 1244444333334668999997653
No 172
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.52 E-value=2.9e-07 Score=81.34 Aligned_cols=80 Identities=20% Similarity=0.106 Sum_probs=62.1
Q ss_pred CeEEeeCCEEEEEEEEee-----cCCCeeEEEECCeecCCC--CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139 557 GLLFEMGEIIKLKVSMAG-----MPPPTARWLHNGEPLTSG--GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g-----~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~ 629 (1101)
...+.+|+++.|.|.+.+ .|.+.+.|++++..+... ....+.. ....|.|.++.+.|+|.|.|.+.|..|.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~~~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QKDLLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence 346778999999999999 688999999998764321 1112222 2467999999999999999999999998
Q ss_pred ceeEEEEEE
Q psy8139 630 DVASFLVTV 638 (1101)
Q Consensus 630 ~~~s~~l~v 638 (1101)
...++.|.|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 877776654
No 173
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.52 E-value=5.6e-07 Score=76.80 Aligned_cols=68 Identities=18% Similarity=0.321 Sum_probs=54.9
Q ss_pred CeEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA 632 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~ 632 (1101)
.+.+..|+++.|.|.+.|.|.| .|.|.++|.++... . ....+.|.|.++. +.|.|.|.|.|..|...+
T Consensus 7 ~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~----~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 7 DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P----APSPSVLNVPGLN--ETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C----CCCCCEEEEcccc--CCeEEEEEEEeccCcEEe
Confidence 4578889999999999999999 79999999988641 1 1124578888875 679999999999996543
No 174
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.51 E-value=5.2e-07 Score=79.71 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=53.7
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCC-CCceEEEeecceEEEEEccCC-CCCCeEEEEEEEeCCCCcee
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTS-GGRYEITHTDRYLNLRISDAR-RADRGEYQAHGVNSLGEDVA 632 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~sl~i~~l~-~~~~y~y~c~A~N~~G~~~~ 632 (1101)
|..+.|.|.+.|.|.|.++|++++..+.. ..++.+. .+.|.|.++. ..|.|.|.|.|.|..|...+
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 86 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV----GGNLVINNPDKYKDAGRYVCIVSNIYGKVRS 86 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE----CCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence 45799999999999999999999988853 3344332 4679999885 68999999999999997643
No 175
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.50 E-value=3e-05 Score=95.50 Aligned_cols=137 Identities=21% Similarity=0.215 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 37 MIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTL 116 (1101)
Q Consensus 37 ~~~~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~ 116 (1101)
.+...++.||++|||++ .|++|++..+.+..||...+|++.|+... +.....+++.+|..
T Consensus 743 ~~~~~~~~iq~aiR~~~----~rrr~~~~~k~i~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~~ 802 (1463)
T COG5022 743 KLDNIATRIQRAIRGRY----LRRRYLQALKRIKKIQVIQHGFRLRRLVD----------------YELKWRLFIKLQPL 802 (1463)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccchhhhcc----------------cchHHHhHHHhhHH
Confidence 45688999999999999 89999999999999999999988865433 22455678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 117 YKAKLLMKRDRAAYTELKQACVSVQ-QRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQ 195 (1101)
Q Consensus 117 ~R~~~~~~~~r~~~~~~~~aa~~iQ-~~~R~~~~r~~~r~~~~~~~~aa~~IQ~~~R~~~~rr~~~~~~~~~~~aa~~iQ 195 (1101)
++ ....|..+......+..+| ..+|....+... .......+++.+|+++|.+..++. +..+.+..+.+|
T Consensus 803 ~~----~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~--e~~~~~~~~~L~~~~~rs~~~~kr----~~~L~k~~i~~~ 872 (1463)
T COG5022 803 LS----LLGSRKEYRSYLACIIKLQKTIKREKKLRETE--EVEFSLKAEVLIQKFGRSLKAKKR----FSLLKKETIYLQ 872 (1463)
T ss_pred hH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHhhhhhHH----HHHhhhHHHHHH
Confidence 88 4456666777777777788 555555433211 234455677777777777765443 344445555577
Q ss_pred HHHHHHHH
Q psy8139 196 RRYRANVA 203 (1101)
Q Consensus 196 ~~~Rg~~~ 203 (1101)
..+|.-.+
T Consensus 873 ~~~r~~~a 880 (1463)
T COG5022 873 SAQRVELA 880 (1463)
T ss_pred HHHHHHHH
Confidence 77775554
No 176
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.49 E-value=7e-07 Score=79.69 Aligned_cols=77 Identities=26% Similarity=0.356 Sum_probs=58.3
Q ss_pred eEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCc--eEEEeecceEEEEEccC-----CCCCCeEEEEEEEeC-CCC
Q psy8139 558 LLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR--YEITHTDRYLNLRISDA-----RRADRGEYQAHGVNS-LGE 629 (1101)
Q Consensus 558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~sl~i~~l-----~~~~~y~y~c~A~N~-~G~ 629 (1101)
..+..|+++.|.|.+.|.|.|.+.|.++|..+..... +.+.. .+++.|.++ .+.|.|.|+|.|.|. .|.
T Consensus 9 ~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~---~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 9 IVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLP---NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred eEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEcc---CCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 4667799999999999999999999999998875432 22222 345666665 578999999999999 887
Q ss_pred c-eeEEEEE
Q psy8139 630 D-VASFLVT 637 (1101)
Q Consensus 630 ~-~~s~~l~ 637 (1101)
. +..+.|.
T Consensus 86 ~~s~~~~l~ 94 (95)
T cd05722 86 IVSRTARLT 94 (95)
T ss_pred EEEeeeEEe
Confidence 5 3344443
No 177
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.49 E-value=7.5e-07 Score=77.12 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=54.7
Q ss_pred CCeEEEEEEEeccCCCeEEEEECCEEeecCC----cEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC--ceEEEEEE
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR----RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG--HSITKARL 540 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~----~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g--~~~~s~~l 540 (1101)
|++++|.|.+.+.|.+.+.|.+++....... ...+......+.|.|.+++.+|+|.|.|.|.|..+ ....+..|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7889999999999999999998775332111 11111112245899999999999999999999876 44445555
Q ss_pred ee
Q psy8139 541 RL 542 (1101)
Q Consensus 541 ~V 542 (1101)
.|
T Consensus 81 ~V 82 (84)
T cd05861 81 TV 82 (84)
T ss_pred EE
Confidence 55
No 178
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.49 E-value=7.1e-07 Score=75.75 Aligned_cols=64 Identities=28% Similarity=0.430 Sum_probs=48.8
Q ss_pred EEEEEEeecCCCeeEEEECCeecCC--CCceEEEeecceEEEEEccCC---C-CCCeEEEEEEEeCCCCcee
Q psy8139 567 KLKVSMAGMPPPTARWLHNGEPLTS--GGRYEITHTDRYLNLRISDAR---R-ADRGEYQAHGVNSLGEDVA 632 (1101)
Q Consensus 567 ~l~c~~~g~p~~~v~W~~~g~~l~~--~~~~~~~~~~~~~sl~i~~l~---~-~~~y~y~c~A~N~~G~~~~ 632 (1101)
.|.|.+.|.|.|.++|+++|.++.. +.++.+ ....++|.|..+. + .+.|.|+|.|.|..|...+
T Consensus 2 ~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~--~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 2 IIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM--RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred EEEEeccccCCCEEEEEECCEEccCcCCCcEEE--eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 5899999999999999999987642 333433 2335678888764 2 3589999999999997544
No 179
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.48 E-value=6.6e-07 Score=74.09 Aligned_cols=63 Identities=24% Similarity=0.379 Sum_probs=50.8
Q ss_pred EEEEEEeecCCCeeEEEECCeecCCC-CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139 567 KLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS 633 (1101)
Q Consensus 567 ~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s 633 (1101)
.|.|.+.|.|.|.+.|+++|.++... ..+.. . ..+|.|.++...|+|.|+|.|.|..+.....
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~--~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~ 65 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV--D--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKN 65 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCCCcEEEe--C--CCEEEECcCCHHHCEEEEEEEEccccceEee
Confidence 58899999999999999999998754 23322 2 3479999999999999999999986654443
No 180
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.48 E-value=7.6e-07 Score=77.34 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=58.6
Q ss_pred CCEEEEEEEEeec--CCCeeEEEECCeecCCCCc-----eEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139 563 GEIIKLKVSMAGM--PPPTARWLHNGEPLTSGGR-----YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL 635 (1101)
Q Consensus 563 g~~~~l~c~~~g~--p~~~v~W~~~g~~l~~~~~-----~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~ 635 (1101)
|+.+.|.|.+.+. |.+.+.|.+++..+..... ...........|.|.++++.|+|.|+|.|.|..|..+.+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6788999999999 8899999987765432211 11111223578999999999999999999999999888887
Q ss_pred EEE
Q psy8139 636 VTV 638 (1101)
Q Consensus 636 l~v 638 (1101)
+.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 181
>KOG0520|consensus
Probab=98.46 E-value=3.2e-07 Score=108.85 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q psy8139 105 KLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAH------FLLMKQKASVIQQWYRNTKLMR 178 (1101)
Q Consensus 105 ~~~~aa~~iQ~~~R~~~~~~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~r~~------~~~~~~aa~~IQ~~~R~~~~rr 178 (1101)
....+|..||..|| .++.|+.|...+..++.||+.+||+..|+.+++. ..++-.++..+|..+|||+.++
T Consensus 808 ~~~~aa~~iq~~f~----~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~ 883 (975)
T KOG0520|consen 808 SDPAAASRIQKKFR----GYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRA 883 (975)
T ss_pred cchhHHHHhhhhhh----hHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhccccccc
Confidence 34578999999999 5588999999999999999999999988766543 2234447889999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 179 LEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDE 237 (1101)
Q Consensus 179 ~~~~~~~~~~~aa~~iQ~~~Rg~~~~~~~r~~~~~~~~a~i~iQ~~~Rg~~~R~~~~~~ 237 (1101)
. +.....|++.||..+|-|.. ..+..+.++.+|++.||+.+|.+.+|.++|++
T Consensus 884 ~----~e~~~~a~t~~e~~yd~yKq--~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~ 936 (975)
T KOG0520|consen 884 L----FEEQETAATVIEDCYDFYKQ--LRKQTEERLTRAVVRVQSMFRSPKAQQQYRRL 936 (975)
T ss_pred c----hhccccccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5 44444588889999996654 22467888899999999999999998666654
No 182
>KOG0160|consensus
Probab=98.44 E-value=3.3e-06 Score=100.61 Aligned_cols=88 Identities=28% Similarity=0.460 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 37 MIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTL 116 (1101)
Q Consensus 37 ~~~~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~ 116 (1101)
.+..+++.||+.+|+|+ .|+.|..++++++.||+.+||+++|+ . .. ...||+.||+.
T Consensus 671 vl~~~~~~iq~~~r~~~----~r~~f~~~r~~~~~~Q~~~rG~~~r~---~---------------~~-~~~aai~~q~~ 727 (862)
T KOG0160|consen 671 VLSAAKVLIQRQIRGYL----ARKKFLQLRSAVIIIQAYSRGVLARR---E---------------TE-REAAAIGIQKE 727 (862)
T ss_pred HHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHHHH---h---------------hH-HHHHHHHhHHH
Confidence 45578888999999999 89999999999999999999999865 1 11 66789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 117 YKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMR 151 (1101)
Q Consensus 117 ~R~~~~~~~~r~~~~~~~~aa~~iQ~~~R~~~~r~ 151 (1101)
+| ++..|+.|.....+++.+|+.+|++++|+
T Consensus 728 ~r----~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 728 CR----SYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99 66788889999999999999999999876
No 183
>KOG0160|consensus
Probab=98.43 E-value=1.5e-06 Score=103.42 Aligned_cols=95 Identities=34% Similarity=0.406 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 125 RDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAM 204 (1101)
Q Consensus 125 ~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~r~~~~~~~~aa~~IQ~~~R~~~~rr~~~~~~~~~~~aa~~iQ~~~Rg~~~~ 204 (1101)
...++-.-+..+++.||+.+|+|+. |+.|..++++++.||+.+||+++|+ ... ...|++.||+.||+++.
T Consensus 664 le~~R~~vl~~~~~~iq~~~r~~~~----r~~f~~~r~~~~~~Q~~~rG~~~r~---~~~--~~~aai~~q~~~r~~~~- 733 (862)
T KOG0160|consen 664 LEARRSDVLSAAKVLIQRQIRGYLA----RKKFLQLRSAVIIIQAYSRGVLARR---ETE--REAAAIGIQKECRSYLN- 733 (862)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHHHH---hhH--HHHHHHHhHHHHHHHHH-
Confidence 3333344456677889999999995 4557788899999999999999987 112 67788889999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 205 RTQRERYVALRTATITIQTRFRAYLIAK 232 (1101)
Q Consensus 205 ~~~r~~~~~~~~a~i~iQ~~~Rg~~~R~ 232 (1101)
|+.|..++.+++.+|+.+|++++|.
T Consensus 734 ---r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 734 ---RRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8899999999999999999999987
No 184
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.42 E-value=1.1e-06 Score=75.41 Aligned_cols=69 Identities=30% Similarity=0.479 Sum_probs=51.1
Q ss_pred EEEEEEEeecCCCeeEEEECCeecC--------CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc-eeEEEE
Q psy8139 566 IKLKVSMAGMPPPTARWLHNGEPLT--------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED-VASFLV 636 (1101)
Q Consensus 566 ~~l~c~~~g~p~~~v~W~~~g~~l~--------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~-~~s~~l 636 (1101)
++|.|.+.|.|.|.+.|++++.... ...++.+. ..++|.|.++...|.|.|.|.|.|..|.. +.+..|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 3689999999999999998643211 12233332 24689999999999999999999999976 344444
Q ss_pred E
Q psy8139 637 T 637 (1101)
Q Consensus 637 ~ 637 (1101)
+
T Consensus 78 ~ 78 (79)
T cd05734 78 T 78 (79)
T ss_pred e
Confidence 3
No 185
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.42 E-value=1.4e-06 Score=76.64 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=60.2
Q ss_pred CceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCC--cEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC-ceE
Q psy8139 459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR--RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG-HSI 535 (1101)
Q Consensus 459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~--~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g-~~~ 535 (1101)
|..+.+..|+++.|.|.+.+ |.+.+.|++++..+.... ........ ..|.|.++..+|+|.|.|.|.+..+ ...
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCccceeE
Confidence 45677889999999999987 888999999988765432 11222222 2599999999999999999987654 344
Q ss_pred EEEEEeec
Q psy8139 536 TKARLRLE 543 (1101)
Q Consensus 536 ~s~~l~V~ 543 (1101)
.+..|.|.
T Consensus 80 ~~~~l~V~ 87 (89)
T cd04979 80 ATYSLNVL 87 (89)
T ss_pred eEEEEEEe
Confidence 45556553
No 186
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.41 E-value=1.4e-06 Score=74.03 Aligned_cols=69 Identities=26% Similarity=0.460 Sum_probs=54.0
Q ss_pred EEEEEEee-cCCCeeEEEECCeecCCC----CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139 567 KLKVSMAG-MPPPTARWLHNGEPLTSG----GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL 635 (1101)
Q Consensus 567 ~l~c~~~g-~p~~~v~W~~~g~~l~~~----~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~ 635 (1101)
.|.|.+.+ .|.+.+.|+++|..+... .++.+.......+|.|.++...|+|.|+|.|.|..|..+.++.
T Consensus 2 ~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 2 VLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred EEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 58999875 678999999999888532 2233333345678999999999999999999999998766543
No 187
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.38 E-value=3e-06 Score=73.35 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=56.2
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCCC----ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCC--CceeEEEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGG----RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG--EDVASFLV 636 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~----~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G--~~~~s~~l 636 (1101)
|+++.|.|.+.+.|.+.+.|.+++....... ...+........|.|.++++.|+|.|.|.|.|..+ ....+..+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 6788999999999999999998765432111 11111222367899999999999999999999876 45556666
Q ss_pred EEe
Q psy8139 637 TVT 639 (1101)
Q Consensus 637 ~v~ 639 (1101)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 653
No 188
>KOG0613|consensus
Probab=98.37 E-value=1.6e-06 Score=105.41 Aligned_cols=396 Identities=19% Similarity=0.115 Sum_probs=217.0
Q ss_pred EEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEe
Q psy8139 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445 (1101)
Q Consensus 366 ~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~ 445 (1101)
.++|+.|..+++...++|.+.........|..... ....-....+..+..-+..+|.+.+..+....+..+......
T Consensus 9 ~lr~~r~~~~~~~~~t~~~~~~~s~l~~~r~~~s~--~~~~~v~~~~e~~~a~~~~rv~~~~r~~~~~~s~~~~~~~~~- 85 (1205)
T KOG0613|consen 9 CLRPDRPGKLVFEAKTTYTVDKLSILPDVRDSGSF--IPDYGVLQVKEGETALLTGRVDGEPRPELIWGSSGIEIDMMV- 85 (1205)
T ss_pred ccCcccCCCcccccCCCCCccccccChhhccCCCc--cccCcceeccCCcceeeeeeeccccccCCCCcccccchhhcc-
Confidence 78899998888888888988776554444443222 222345667778888899999999988766544333333222
Q ss_pred ccCCCCCCeeeecCceeE-----EccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139 446 QRSPAAAPSFIRALHDTT-----ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520 (1101)
Q Consensus 446 ~~~~~~~P~~~~~p~~~~-----v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~ 520 (1101)
+.++.....+.+.. ........+.-...+.+.+.|. ...+..+......-....+....+.+..+..-+.
T Consensus 86 ----pa~~~~~~~~~~~~l~~t~~v~~~~ad~~~~~~~e~~~~i~-~~~~~~v~~~e~pd~~~~~~~sv~~~~~~v~~~~ 160 (1205)
T KOG0613|consen 86 ----PATEYSLVTHMNTELGSTWAVGDEYADDRPIHLVERKALID-VVPSPEVCQQEKPDPPPSNRESVLVHRARVLPAW 160 (1205)
T ss_pred ----cccccccccccccccccccccccccccccccccccccccCC-ccccchhhhhcCCCCCCCCccceeecCceecccc
Confidence 22222222111110 0000111111111111111111 1111111111111111111222333333332232
Q ss_pred EEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEee-CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEe
Q psy8139 521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM-GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH 599 (1101)
Q Consensus 521 g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~-g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~ 599 (1101)
+...|-+.+..+.......+....+............+.... +....+-....|.|.+...|..+|..+..+.......
T Consensus 161 ~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~~~~s~~~~a~~e~~v~~v~s~gqp~~~~~~~~~g~~i~~~~~~~~s~ 240 (1205)
T KOG0613|consen 161 RPPREDGGRKREEYIIERRQAGRSPWLKRLTQPTDDSTDTDAHYESRVRAVVSAGQPEPLERWEILGELIAPGSAPSMSV 240 (1205)
T ss_pred cCCccCccceeecceEEEEeccCCCcccccccccCCcceeccccceeEEEEEecCCCccchhhhhcccccCCCCcccccc
Confidence 323332222222222223333333333322222222223333 2333333444578899999999999998887777776
Q ss_pred ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEE
Q psy8139 600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE 679 (1101)
Q Consensus 600 ~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~ 679 (1101)
......+.|...-+.+.|.|...+.|..|.... .++.........+....++|..+....++.+..|...
T Consensus 241 t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~----------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~ 310 (1205)
T KOG0613|consen 241 TLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK----------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTE 310 (1205)
T ss_pred ccchhheeeeEEeecCCCchHHHHhcchhhhcc----------cCCCccccccccCCccccceeeecccCCcccceeeeE
Confidence 666677777777778889998888888776433 2333334444566778899999999999999999888
Q ss_pred EEcC----CCCCC-------CC---ccc---CCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeeccccc
Q psy8139 680 YFRP----PGPPG-------KP---QLL---PDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742 (1101)
Q Consensus 680 ~~~~----~~~p~-------~p---~~~---~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~ 742 (1101)
++.+ +++.+ +| ... .....-+.+.+++.|.-+...-.....+|.+.-....+..|........
T Consensus 311 ~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1205)
T KOG0613|consen 311 EAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTV 390 (1205)
T ss_pred EeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccc
Confidence 8544 22221 11 111 1111335667778887654433344566666655555556655555445
Q ss_pred CccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCc
Q psy8139 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEP 779 (1101)
Q Consensus 743 ~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~ 779 (1101)
....+.+.++.++..|..+|.|.|..|...+.+.+.+
T Consensus 391 ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~v 427 (1205)
T KOG0613|consen 391 TSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTV 427 (1205)
T ss_pred cCcchhhhhcCcccccccccceeccCCcccccchhhc
Confidence 6678899999999999999999999998666554433
No 189
>KOG3515|consensus
Probab=98.36 E-value=3.5e-05 Score=90.65 Aligned_cols=350 Identities=12% Similarity=0.033 Sum_probs=192.5
Q ss_pred cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCee-eecCceeEEccCCeEEEEEEEeccC-CC
Q psy8139 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF-IRALHDTTALEDEKVEFTVQVEGIP-TP 482 (1101)
Q Consensus 405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~-~~~p~~~~v~~g~~v~L~C~~~g~p-~~ 482 (1101)
...+.+..+...+.+.|.|.|.+....... +....+.+. .+|.+ ...+......+++.......+.+.| .+
T Consensus 360 ~~~~~~q~~~~~~~g~v~c~a~~~~~~~~s---ss~~~l~~l----~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~ 432 (741)
T KOG3515|consen 360 VISHYAQPSSQQDGGQVTCPADNLELAHSS---SSSFLLPVL----PSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAER 432 (741)
T ss_pred eEEeeecccchhcCceEEcccccccccccc---ccceecccc----CCchhhhhcccceeeccCccccccCcccCCCccc
Confidence 345677788889999999999987743322 222333322 33333 3334444455555544444333444 45
Q ss_pred eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEee
Q psy8139 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM 562 (1101)
Q Consensus 483 ~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~ 562 (1101)
.+.|...+..+.....-.+....+.....+.++...|.|.|.|.+.|+.|.......+.+...|.+.... .......
T Consensus 433 ~~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~---~~~~~~~ 509 (741)
T KOG3515|consen 433 TFYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQ---DQVEGAT 509 (741)
T ss_pred chhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccc---cccccCC
Confidence 7999999888876544333333332345566788899999999999999998887777777766553221 2224445
Q ss_pred CCEEEEEEEEeecC--CCeeEEEECCeecCCCC--ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 563 GEIIKLKVSMAGMP--PPTARWLHNGEPLTSGG--RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 563 g~~~~l~c~~~g~p--~~~v~W~~~g~~l~~~~--~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
++++.+.|.....+ .-.+.|.+.+.+.+... ............+.+.+......|.|.|.+.|..-.+.....+.+
T Consensus 510 ~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~ 589 (741)
T KOG3515|consen 510 GNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKA 589 (741)
T ss_pred CCcccceeeccccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEe
Confidence 66788899887665 34688888776654211 111111222455667777767789999999882212222333333
Q ss_pred ecCC---CCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeC-CCCC
Q psy8139 639 TDRP---LPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYD 714 (1101)
Q Consensus 639 ~~~P---~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~p-P~~~ 714 (1101)
...+ ..+.++.........++++|.+ ....+....|.. |...
T Consensus 590 ~s~~~v~~~tp~~~~~~~g~v~as~~~~a----------------------------------~~~~~~~~~~~k~p~~~ 635 (741)
T KOG3515|consen 590 YSALIVTVRTPNMYTAQEGCVNASDDCVA----------------------------------SGVPSTSFTTAKTPLQT 635 (741)
T ss_pred cccccccccCCceeeeccCccccccccee----------------------------------cccccceeecccCCCcc
Confidence 3222 1112222222222244444421 111223345554 3222
Q ss_pred CCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcc
Q psy8139 715 GGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 794 (1101)
Q Consensus 715 ~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~ 794 (1101)
-.+ ...|..-+ |.. . ....+..+-+-.++..|.+.|.+.|..|.+.-+ ..... ..-+..|.+
T Consensus 636 ~~~-~~~~~~~~-------~~~-~---~~s~~~~~~~~~~~~~y~~~c~t~n~lg~~~v~---~~~~~---~t~~~~~~n 697 (741)
T KOG3515|consen 636 TEG-PHIREKAT-------QQG-Q---THSSSEWILNHIDGSDYENGCTTQNLLGSDHVS---GAIHS---GTASVGPIN 697 (741)
T ss_pred cCC-ceEEEeee-------ecc-c---cccccccccCCcchhhhcceeeecccCCCcccc---ceecC---CcCCCCccc
Confidence 111 11111111 111 0 122233455677888999999999999975433 22221 234455555
Q ss_pred cc--cccccceeccccCCCCCCcc
Q psy8139 795 IR--ALHDTTALEDEKPRNTNNCD 816 (1101)
Q Consensus 795 ~~--~~~~s~~~~~w~p~~~~~~~ 816 (1101)
+. .+...++-+-|.|..+..+.
T Consensus 698 ~~~~~~~~~~i~l~~~p~fdgg~~ 721 (741)
T KOG3515|consen 698 LTYDNLTYSTISLEWMPGFDGGLQ 721 (741)
T ss_pred eEeeeeeeeeeceeeeeccccccc
Confidence 55 44455566778775554443
No 190
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.36 E-value=7.5e-07 Score=77.73 Aligned_cols=74 Identities=34% Similarity=0.690 Sum_probs=60.5
Q ss_pred CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCc-eEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCC
Q psy8139 359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP 434 (1101)
Q Consensus 359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~-w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~ 434 (1101)
.++.+++.|+|.+|. .++..+.+|.|++....+.. |..... ......+.|.+|.|++.|.|++.|.|..|.+.+
T Consensus 10 ~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g~g~~ 84 (85)
T PF00041_consen 10 NISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTV-PGNETSYTITGLQPGTTYEFRVRAVNSDGEGPP 84 (85)
T ss_dssp EECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEE-ETTSSEEEEESCCTTSEEEEEEEEEETTEEEEE
T ss_pred ECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeee-eeeeeeeeeccCCCCCEEEEEEEEEeCCcCcCC
Confidence 678999999999996 66779999999999877665 444332 234458999999999999999999999987653
No 191
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.35 E-value=2e-06 Score=75.95 Aligned_cols=65 Identities=35% Similarity=0.589 Sum_probs=51.9
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCC--CceEEEeecceEEEEEccCC-CCCCeEEEEEEEeCCCCce
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSG--GRYEITHTDRYLNLRISDAR-RADRGEYQAHGVNSLGEDV 631 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~sl~i~~l~-~~~~y~y~c~A~N~~G~~~ 631 (1101)
|..+.|.|.+.|+|.|.++|++++..+... ..+... .+.|.|.++. ..|.|.|+|.|.|..|...
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV----GGNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE----CCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 467999999999999999999999988432 233222 4578888876 4899999999999999643
No 192
>KOG3515|consensus
Probab=98.34 E-value=7.8e-06 Score=95.99 Aligned_cols=260 Identities=12% Similarity=0.056 Sum_probs=161.5
Q ss_pred EEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC--eEE
Q psy8139 408 LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP--KVS 485 (1101)
Q Consensus 408 l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~--~v~ 485 (1101)
....++...|.|.|.|.|.|..|..... +...+ ...|.+...-.......+.++.+.|.....|.. .+.
T Consensus 460 ~s~~~v~~~d~g~y~~tatns~gg~~~~-----~~~~~----~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~ 530 (741)
T KOG3515|consen 460 GSGVNVSRSDGGSYGLTATNSPGGAQAY-----LLLGV----HTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHH 530 (741)
T ss_pred cccceeeeccCCcceeeeccCCCceeeE-----Eeecc----ccCCcccccccccccCCCCcccceeeccccccchhhhc
Confidence 3455688889999999999998876421 22122 244444433334455667778999988776654 478
Q ss_pred EEECCEEeecCC--cEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEee-
Q psy8139 486 WYKDGFEIFSSR--RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM- 562 (1101)
Q Consensus 486 W~~~g~~~~~~~--~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~- 562 (1101)
|.+.+.+..... ............+.+.......+|.|.|.+.+..-.+.....+.+..++.....+.. .....+
T Consensus 531 ~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~--~~~~~~g 608 (741)
T KOG3515|consen 531 EPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTVRTPN--MYTAQEG 608 (741)
T ss_pred ccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccccCCc--eeeeccC
Confidence 988776543210 000111112235666666666789999999883222333344455444433322211 111111
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEe----ecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH----TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~----~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
+..++..|.+.+.+.+.+.|.+++.....+.++.... .....+..+-+.-....|...|.+.|..|.+..+..+.-
T Consensus 609 ~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~ 688 (741)
T KOG3515|consen 609 CVNASDDCVASGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDGSDYENGCTTQNLLGSDHVSGAIHS 688 (741)
T ss_pred cccccccceecccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcchhhhcceeeecccCCCccccceecC
Confidence 2267889988899999999999877644433322111 111223344445556677799999999999888877777
Q ss_pred ecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEE
Q psy8139 639 TDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY 680 (1101)
Q Consensus 639 ~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~ 680 (1101)
-..|..|.++.+......++.|.|. |..++|+. ..+.+.|
T Consensus 689 ~t~~~~~~n~~~~~~~~~~i~l~~~-p~fdgg~~-q~f~~~~ 728 (741)
T KOG3515|consen 689 GTASVGPINLTYDNLTYSTISLEWM-PGFDGGLQ-QRFFLKY 728 (741)
T ss_pred CcCCCCccceEeeeeeeeeeceeee-eccccccc-cceeeeh
Confidence 7788999999999999999999999 66666632 3344433
No 193
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.33 E-value=7.8e-06 Score=72.12 Aligned_cols=80 Identities=29% Similarity=0.418 Sum_probs=63.4
Q ss_pred CeEEeeCCEEEEEEEEeecCCC-eeEEEECCeecCCC--CceEEEee----cceEEEEEccCCCCC-CeEEEEEEEeCCC
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSG--GRYEITHT----DRYLNLRISDARRAD-RGEYQAHGVNSLG 628 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~-~v~W~~~g~~l~~~--~~~~~~~~----~~~~sl~i~~l~~~~-~y~y~c~A~N~~G 628 (1101)
...+..|+.+.|.|.+.+.|.| .+.|..++..+..+ .++.+... +..+.|.|.++...| .|.|.|.|.|..|
T Consensus 10 s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G 89 (98)
T cd05898 10 VQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG 89 (98)
T ss_pred eEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence 4577889999999999877765 67998887776543 56666543 467899999998777 7899999999999
Q ss_pred CceeEEEE
Q psy8139 629 EDVASFLV 636 (1101)
Q Consensus 629 ~~~~s~~l 636 (1101)
.......|
T Consensus 90 ~d~~~i~L 97 (98)
T cd05898 90 SGTAIIQL 97 (98)
T ss_pred cceEEEEe
Confidence 98766554
No 194
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.32 E-value=2.7e-06 Score=74.63 Aligned_cols=75 Identities=20% Similarity=0.233 Sum_probs=58.5
Q ss_pred eEEccCCeEEEEEEEec-----cCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139 462 TTALEDEKVEFTVQVEG-----IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536 (1101)
Q Consensus 462 ~~v~~g~~v~L~C~~~g-----~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~ 536 (1101)
..+..|.+..|.|...+ +|.|.+.|++++.++....... . . ...|.|.++..+|+|.|+|.|.|..|....
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~-~--~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V-K--GSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e-c--CCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 45778999999997643 3578999999999887554332 2 2 238999999999999999999999887666
Q ss_pred EEEE
Q psy8139 537 KARL 540 (1101)
Q Consensus 537 s~~l 540 (1101)
....
T Consensus 81 ~~t~ 84 (92)
T cd05757 81 NVTR 84 (92)
T ss_pred EEEE
Confidence 5433
No 195
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.31 E-value=5.5e-06 Score=72.20 Aligned_cols=79 Identities=24% Similarity=0.424 Sum_probs=62.3
Q ss_pred EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEE-EeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE
Q psy8139 559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEI-THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT 637 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~ 637 (1101)
.+..|..+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++.+.|.|.|.|.|.|..|....+..|.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 456799999999999999999999999988764433322 2223345789999999999999999999999876666554
No 196
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.30 E-value=2.9e-06 Score=73.15 Aligned_cols=66 Identities=26% Similarity=0.305 Sum_probs=53.2
Q ss_pred eEEccCCeEEEEEEEe-ccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139 462 TTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI 535 (1101)
Q Consensus 462 ~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~ 535 (1101)
..+.+|++++|.|.+. +.+.+.+.|+++|..+.. ......|.|.++...|+|.|+|.+.+..|...
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~--------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY--------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc--------cCCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 3688999999999985 456678999999976532 11234899999999999999999999988544
No 197
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.29 E-value=1.4e-05 Score=69.43 Aligned_cols=83 Identities=33% Similarity=0.528 Sum_probs=67.5
Q ss_pred ceeEEccCCeEEEEEEEeccCCCeEEEEEC-CEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKD-GFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538 (1101)
Q Consensus 460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~ 538 (1101)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+.....+..........|.|.++...|+|.|.|.+.+..+......
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 345678899999999999988889999998 7777655566666555567999999999999999999998877766665
Q ss_pred EEee
Q psy8139 539 RLRL 542 (1101)
Q Consensus 539 ~l~V 542 (1101)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 5554
No 198
>smart00409 IG Immunoglobulin.
Probab=98.29 E-value=1.4e-05 Score=69.43 Aligned_cols=83 Identities=33% Similarity=0.528 Sum_probs=67.5
Q ss_pred ceeEEccCCeEEEEEEEeccCCCeEEEEEC-CEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKD-GFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538 (1101)
Q Consensus 460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~ 538 (1101)
..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+.....+..........|.|.++...|+|.|.|.+.+..+......
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 345678899999999999988889999998 7777655566666555567999999999999999999998877766665
Q ss_pred EEee
Q psy8139 539 RLRL 542 (1101)
Q Consensus 539 ~l~V 542 (1101)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 5554
No 199
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.25 E-value=3.9e-06 Score=73.09 Aligned_cols=74 Identities=24% Similarity=0.258 Sum_probs=59.4
Q ss_pred CeEEeeCCEEEEEEEEee-cCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEE
Q psy8139 557 GLLFEMGEIIKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL 635 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~ 635 (1101)
...+..|+.++|.|.+.+ .|.+.+.|++++..+... . ....+.|.|.++++.|+|.|.|.|.|..|....++.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~----~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~ 83 (85)
T cd05754 10 SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--A----MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATAT 83 (85)
T ss_pred ceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--c----cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence 346788999999999975 688999999988665432 1 112468999999999999999999999998877765
Q ss_pred E
Q psy8139 636 V 636 (1101)
Q Consensus 636 l 636 (1101)
|
T Consensus 84 l 84 (85)
T cd05754 84 L 84 (85)
T ss_pred E
Confidence 4
No 200
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.25 E-value=8.3e-06 Score=72.35 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=60.1
Q ss_pred CCeEEeeCCEEEEEEEEeecCCCeeEEEECC--------eecCCCCceEEEe-ecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139 556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNG--------EPLTSGGRYEITH-TDRYLNLRISDARRADRGEYQAHGVNS 626 (1101)
Q Consensus 556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g--------~~l~~~~~~~~~~-~~~~~sl~i~~l~~~~~y~y~c~A~N~ 626 (1101)
.++.+.+|+++.|.|.+.+.|.+.+.|++.+ ......+++.... .....+|.|.++++.|+|.|.|.+.+.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 3568889999999999999999999998532 2222334555432 234578999999999999999999985
Q ss_pred CCCceeEEEEEE
Q psy8139 627 LGEDVASFLVTV 638 (1101)
Q Consensus 627 ~G~~~~s~~l~v 638 (1101)
.+. ...+.|.|
T Consensus 85 ~~~-~~~~~l~v 95 (95)
T cd07701 85 PVK-TSKAYLTV 95 (95)
T ss_pred cCc-cEEEEEEC
Confidence 333 55555543
No 201
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.25 E-value=6.7e-06 Score=70.82 Aligned_cols=66 Identities=29% Similarity=0.389 Sum_probs=54.2
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCC-CceEEEeecceEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG-GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~ 627 (1101)
...+..|+++.|.|.+.+ +.+.+.|.++|.++..+ .++.+. ...|.|.+++..|+|.|+|.|.+..
T Consensus 5 ~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~----~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 5 QRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY----RDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred eEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE----CCcEEEeCCCHHHCEEEEEEEEecc
Confidence 457888999999999754 67899999999999765 344332 4569999999999999999998764
No 202
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.24 E-value=1e-05 Score=72.19 Aligned_cols=83 Identities=18% Similarity=0.348 Sum_probs=59.2
Q ss_pred CceeEEccCCeEEEEEEEeccCCCeEEEEECCEE-e-------ecCCcEEEEe-cCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139 459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFE-I-------FSSRRQRIVT-DNDISTLIIHQAALMDEGEIKCTATN 529 (1101)
Q Consensus 459 p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~-~-------~~~~~~~~~~-~~~~~~l~I~~l~~~d~g~Y~C~a~n 529 (1101)
+.++.+.+|++++|.|.+.+.+.+.+.|++.+.. + ....++.+.. .+....|+|.+++.+|+|.|.|.+.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 3567789999999999999888899999863221 1 1223444422 23445899999999999999999997
Q ss_pred CCCceEEEEEEee
Q psy8139 530 RAGHSITKARLRL 542 (1101)
Q Consensus 530 ~~g~~~~s~~l~V 542 (1101)
... ...++.|.|
T Consensus 84 ~~~-~~~~~~~~v 95 (95)
T cd05717 84 MPV-QTAKATVTV 95 (95)
T ss_pred CCC-ceEEEEEEC
Confidence 653 355555543
No 203
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.22 E-value=2.6e-06 Score=74.40 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=55.1
Q ss_pred eeEEccCCeEEEEEEE-eccCCCeEEEEECCEEee--cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139 461 DTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIF--SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHS 534 (1101)
Q Consensus 461 ~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~~~--~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~ 534 (1101)
...+.+|+.+.|.|.. .|.|.+.+.|++++.++. ...+..+.. ..+.|.|.++...|+|.|+|.|.|..+..
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 3568889999999954 688999999999987542 223333332 23389999999999999999999976543
No 204
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.21 E-value=3.4e-06 Score=71.51 Aligned_cols=58 Identities=29% Similarity=0.460 Sum_probs=48.6
Q ss_pred eEEeeCCEEEEEEEEeecCC-CeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139 558 LLFEMGEIIKLKVSMAGMPP-PTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626 (1101)
Q Consensus 558 ~~v~~g~~~~l~c~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~ 626 (1101)
..+.+|++++|.|.+.+.|. ..+.|+++|..+.. ....|.|.++ ..|+|.|+|.|.|.
T Consensus 10 ~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 10 TTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 37888999999999999875 57999999987632 2457889999 99999999999875
No 205
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.21 E-value=1.3e-05 Score=68.71 Aligned_cols=70 Identities=34% Similarity=0.604 Sum_probs=54.6
Q ss_pred eEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCc-eEEEEEE
Q psy8139 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH-SITKARL 540 (1101)
Q Consensus 462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~-~~~s~~l 540 (1101)
..+..|++++|.|.+.+.|.+.+.|++++..+.... + .+.+.++...|.|.|+|.+.+..+. .+.++.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~--------~--~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v 78 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ--------N--GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV 78 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES--------S--EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee--------e--eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence 568899999999999999999999999987775321 1 2777889999999999999996653 2334444
Q ss_pred e
Q psy8139 541 R 541 (1101)
Q Consensus 541 ~ 541 (1101)
.
T Consensus 79 ~ 79 (80)
T PF13895_consen 79 T 79 (80)
T ss_dssp E
T ss_pred e
Confidence 4
No 206
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.21 E-value=1.6e-05 Score=70.23 Aligned_cols=80 Identities=19% Similarity=0.293 Sum_probs=58.5
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeec--------CCCCceEEEee-cceEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL--------TSGGRYEITHT-DRYLNLRISDARRADRGEYQAHGVNSL 627 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~~-~~~~sl~i~~l~~~~~y~y~c~A~N~~ 627 (1101)
+..+..|+++.|.|.+.+.|.+.+.|.+++..+ ....++.+... ....+|.|.++.+.|.|.|+|.+.. .
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-~ 84 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT-M 84 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-e
Confidence 457889999999999999999999999876532 12234443322 2357899999999999999999987 2
Q ss_pred CCceeEEEEE
Q psy8139 628 GEDVASFLVT 637 (1101)
Q Consensus 628 G~~~~s~~l~ 637 (1101)
-..+..+.++
T Consensus 85 ~~~~~~~~~~ 94 (95)
T cd05882 85 PVRTAKATVT 94 (95)
T ss_pred ccccEEEEEE
Confidence 2334444443
No 207
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.19 E-value=8.7e-06 Score=65.91 Aligned_cols=63 Identities=40% Similarity=0.656 Sum_probs=50.7
Q ss_pred cCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139 466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG 532 (1101)
Q Consensus 466 ~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g 532 (1101)
+|++++|.|.+.+.|.+.+.|++++..+.. ..... .....|.|.++...|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLS--ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEe--cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999998899999999999887762 22222 2334899999999999999999998764
No 208
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.19 E-value=0.0001 Score=91.04 Aligned_cols=145 Identities=21% Similarity=0.134 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 3 QCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCM 82 (1101)
Q Consensus 3 ~~r~~~~~~~~aa~~iQ~~~Rg~~~r~~~~~~~~~~~~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ~~~R~~~~r 82 (1101)
++-++-..+..+++.||++|||++.|+++... ......||...+|+..++ +..+.-.-.+++.||..+|....|
T Consensus 736 LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~----~k~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~r 809 (1463)
T COG5022 736 LEDMRDAKLDNIATRIQRAIRGRYLRRRYLQA----LKRIKKIQVIQHGFRLRR--LVDYELKWRLFIKLQPLLSLLGSR 809 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcccchhh--hcccchHHHhHHHhhHHhHHHhhH
Confidence 35677788899999999999999999977643 345566777777877332 223333447899999999998774
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 83 RQARQQYLALKHATLKQREEFLKLKHATIAIQ-TLYKAKLLMKRDRA--AYTELKQACVSVQQRWRANLTMRKQRAHFLL 159 (1101)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ-~~~R~~~~~~~~r~--~~~~~~~aa~~iQ~~~R~~~~r~~~r~~~~~ 159 (1101)
.. ++.....++.+| ..++ .+..+. .-.....+++.+|++||.+.+ ++++..
T Consensus 810 ~~------------------~~~~~~~i~~lq~~i~~----~~~~~~~~e~~~~~~~~~L~~~~~rs~~~----~kr~~~ 863 (1463)
T COG5022 810 KE------------------YRSYLACIIKLQKTIKR----EKKLRETEEVEFSLKAEVLIQKFGRSLKA----KKRFSL 863 (1463)
T ss_pred HH------------------HHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHH
Confidence 44 445555666677 3333 222222 123345567777888777774 444455
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8139 160 MKQKASVIQQWYRNTKLMRL 179 (1101)
Q Consensus 160 ~~~aa~~IQ~~~R~~~~rr~ 179 (1101)
+.+..+.+|..+|--.++|.
T Consensus 864 L~k~~i~~~~~~r~~~a~r~ 883 (1463)
T COG5022 864 LKKETIYLQSAQRVELAERQ 883 (1463)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 56666777777776666554
No 209
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.19 E-value=7e-06 Score=72.06 Aligned_cols=75 Identities=13% Similarity=0.112 Sum_probs=59.7
Q ss_pred EEeeCCEEEEEEEEeec-----CCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139 559 LFEMGEIIKLKVSMAGM-----PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS 633 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~-----p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s 633 (1101)
.+..|.+..|.|...+. |.|.+.|++++.++....... . ..+.|.|.++...|+|.|+|.|.|..|.....
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e---cCCEEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence 67789999999987643 578999999999987654332 2 36789999999999999999999998876655
Q ss_pred EEEE
Q psy8139 634 FLVT 637 (1101)
Q Consensus 634 ~~l~ 637 (1101)
....
T Consensus 82 ~t~t 85 (92)
T cd05757 82 VTRT 85 (92)
T ss_pred EEEE
Confidence 4433
No 210
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.18 E-value=7.8e-06 Score=71.73 Aligned_cols=72 Identities=13% Similarity=0.197 Sum_probs=53.3
Q ss_pred eEEccCCeEEEEEEEeccCCCeEEEEECCEEe-e-------------cCCcEEEEe---cCCeeEEEEeecCCCCCEEEE
Q psy8139 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI-F-------------SSRRQRIVT---DNDISTLIIHQAALMDEGEIK 524 (1101)
Q Consensus 462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~-~-------------~~~~~~~~~---~~~~~~l~I~~l~~~d~g~Y~ 524 (1101)
+.+..|++++|.|.+.+.+.+.+.|++++... . ...++.... ..+...|+|.++..+|+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 35678999999999999999999999765322 1 111222222 334568999999999999999
Q ss_pred EEEEeCCCc
Q psy8139 525 CTATNRAGH 533 (1101)
Q Consensus 525 C~a~n~~g~ 533 (1101)
|.+.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999887654
No 211
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.17 E-value=5.1e-06 Score=72.45 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=56.6
Q ss_pred CceeEEccCCeEEEEEE-EeccCCCeEEEEECCEE-eecCCcEEEEecCCeeEEEEeecCCCCCE-EEEEEEEeCCCc
Q psy8139 459 LHDTTALEDEKVEFTVQ-VEGIPTPKVSWYKDGFE-IFSSRRQRIVTDNDISTLIIHQAALMDEG-EIKCTATNRAGH 533 (1101)
Q Consensus 459 p~~~~v~~g~~v~L~C~-~~g~p~~~v~W~~~g~~-~~~~~~~~~~~~~~~~~l~I~~l~~~d~g-~Y~C~a~n~~g~ 533 (1101)
...+.+.+|+.+.|.|. ..|.|.|.|.|..++.. +....++.+..+ +.|.|.++...|.| .|.|.|.|....
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~---GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQN---GNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCC---ceEEEEEEehhhCCCCeEEEEEccccc
Confidence 46678999999999997 69999999999987654 333344433322 48999999999999 799999987543
No 212
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.17 E-value=2.3e-05 Score=69.04 Aligned_cols=74 Identities=39% Similarity=0.703 Sum_probs=53.8
Q ss_pred CceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139 701 RDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP 775 (1101)
Q Consensus 701 ~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~ 775 (1101)
+.++.|+|.+|...+ +.+.+|.|.+...+...|..+.........+.+.+|.|++.|.|+|.|.+..|.|.++.
T Consensus 14 ~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~s~ 87 (93)
T cd00063 14 STSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSE 87 (93)
T ss_pred CCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCccCCCcc
Confidence 345555555543332 34678999988776566776655324678899999999999999999999988876654
No 213
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.17 E-value=8.4e-06 Score=71.66 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=58.6
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCC--ceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCC-CceeE
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGG--RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG-EDVAS 633 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G-~~~~s 633 (1101)
.+.+..|+++.|.|.+.+ |.+.+.|++++..+.... ...+... ...|.|.++++.|.|.|.|.|.|..+ ....+
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--EDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--CCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 346788999999999877 888999999988775432 1112211 34589999999999999999987655 33445
Q ss_pred EEEEEe
Q psy8139 634 FLVTVT 639 (1101)
Q Consensus 634 ~~l~v~ 639 (1101)
..|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 566554
No 214
>KOG4258|consensus
Probab=98.11 E-value=5.4e-05 Score=87.73 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=61.5
Q ss_pred CCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecc--cccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCC
Q psy8139 700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP--HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLS 777 (1101)
Q Consensus 700 ~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s 777 (1101)
+.+++.|.|.+|..++|. |++|.|.|+..+...-..... .........+.+|.|| .|.++|+|..-+|.|.+...+
T Consensus 841 ~~~~v~l~w~EP~~pNGl-i~~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~ 918 (1025)
T KOG4258|consen 841 EMNSVILRWLEPKEPNGL-ILNYEVKYRRNGDETHVECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESV 918 (1025)
T ss_pred CcceEEEecCCCCCCCcc-EEEEEEEEeeccCcchhhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCc
Confidence 567899999999887776 999999999887654333221 1133456678888888 599999999999999987766
Q ss_pred CcEEe
Q psy8139 778 EPLTV 782 (1101)
Q Consensus 778 ~~~t~ 782 (1101)
.+...
T Consensus 919 ~~~v~ 923 (1025)
T KOG4258|consen 919 IFYVS 923 (1025)
T ss_pred ceEEe
Confidence 66654
No 215
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.11 E-value=1.1e-05 Score=70.72 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=54.8
Q ss_pred eEEccCCeEEEEEEEeccCCCeEEEEECC--EEe----ecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE-eCCCce
Q psy8139 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDG--FEI----FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT-NRAGHS 534 (1101)
Q Consensus 462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g--~~~----~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~-n~~g~~ 534 (1101)
+.+.+|+++.|.|.. +.|.|.+.|++.+ ... ....++.. .+ ..|.|.++.++|+|.|+|.|. |..+..
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~--~~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH--TE--RGLLLRSLQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE--ec--CeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence 457889999999996 5788999999832 111 11223322 22 269999999999999999998 465555
Q ss_pred EEEEEEeec
Q psy8139 535 ITKARLRLE 543 (1101)
Q Consensus 535 ~~s~~l~V~ 543 (1101)
.....|.|.
T Consensus 81 ~~~~~l~v~ 89 (91)
T cd05871 81 LAKYTLHVI 89 (91)
T ss_pred EEEEEEEEe
Confidence 556666664
No 216
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.11 E-value=3e-05 Score=67.82 Aligned_cols=83 Identities=13% Similarity=0.217 Sum_probs=66.3
Q ss_pred eeEEccCCeEEEEEEEeccCCCe-EEEEECCEEeecCCcEEEEecC-----CeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139 461 DTTALEDEKVEFTVQVEGIPTPK-VSWYKDGFEIFSSRRQRIVTDN-----DISTLIIHQAALMDEGEIKCTATNRAGHS 534 (1101)
Q Consensus 461 ~~~v~~g~~v~L~C~~~g~p~~~-v~W~~~g~~~~~~~~~~~~~~~-----~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~ 534 (1101)
.+.|..|+++.|.|.+.+.|.|. +.|.+++..+............ -.+.|.+..+...+.|.|+|.|.|..+..
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 45688999999999999999997 9999988766543321222211 34689999999999999999999999988
Q ss_pred EEEEEEeec
Q psy8139 535 ITKARLRLE 543 (1101)
Q Consensus 535 ~~s~~l~V~ 543 (1101)
+.+..|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 888877764
No 217
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.11 E-value=1.2e-05 Score=69.95 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=55.8
Q ss_pred CCeEEEEEEEeccCC--CeEEEEECCEEeec---CCc--EEE-EecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEE
Q psy8139 467 DEKVEFTVQVEGIPT--PKVSWYKDGFEIFS---SRR--QRI-VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~--~~v~W~~~g~~~~~---~~~--~~~-~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~ 538 (1101)
|+++.|.|.+.+.+. ..+.|..++..... ... ... ......+.|.|.+++..|+|.|+|.|.|..|....++
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 688999999987654 47799887753311 111 000 1122346899999999999999999999998888888
Q ss_pred EEeec
Q psy8139 539 RLRLE 543 (1101)
Q Consensus 539 ~l~V~ 543 (1101)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77774
No 218
>KOG4258|consensus
Probab=98.09 E-value=1.3e-05 Score=92.73 Aligned_cols=124 Identities=18% Similarity=0.207 Sum_probs=80.5
Q ss_pred CCCceEEEEeeCCCCCCCCCcceEEEEEEeC--------------CCCCceeeccccc-------CccEEEEcCCCCCce
Q psy8139 699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT--------------GSPYWVRASPHMV-------EDTELMVSGLEPGWR 757 (1101)
Q Consensus 699 ~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~--------------~~~~~~~~~~~~~-------~~~~~~i~~L~p~t~ 757 (1101)
.+.+++.|+|..-....--...+|.+.|++. ++..|......+. ...-+.+.+|+|+|.
T Consensus 499 ~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP~Tq 578 (1025)
T KOG4258|consen 499 TSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKPWTQ 578 (1025)
T ss_pred eecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCCccce
Confidence 4678999999873222223488999999865 2356766544322 112458999999999
Q ss_pred EEEEEEEEcC--CccCCCCCCCCcEEecCCCCCCCCCccc-c-cccccceeccccCCCCCCccccceeee
Q psy8139 758 YQFRITAENV--VGFSEPGPLSEPLTVTYQRSPAAAPSFI-R-ALHDTTALEDEKPRNTNNCDYESKRTF 823 (1101)
Q Consensus 758 Y~~~V~A~n~--~G~g~~S~~s~~~t~~~~~~P~~~p~~~-~-~~~~s~~~~~w~p~~~~~~~~~~~~~~ 823 (1101)
|-|-|.+... ++...- ..|.+.-+.+...-|.||... . ..+++.+++.|+||..+|+.+..|.+.
T Consensus 579 YAvfVkT~t~t~~~~~~~-A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~ 647 (1025)
T KOG4258|consen 579 YAVFVKTLTVTEAHEAYE-AKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVV 647 (1025)
T ss_pred eEEEEeeeehhhhccccc-cccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEE
Confidence 9999999843 333221 345555554434444555444 4 444456788999999999987777443
No 219
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.05 E-value=1.3e-05 Score=70.11 Aligned_cols=72 Identities=24% Similarity=0.265 Sum_probs=56.2
Q ss_pred CeEEeeCCEEEEEEEE-eecCCCeeEEEECCeecC--CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139 557 GLLFEMGEIIKLKVSM-AGMPPPTARWLHNGEPLT--SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~-~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~ 630 (1101)
...+.+|..+.|.|.. .|.|.+.+.|.+++.++. .+.+. .....++.|.|.+++..|.|.|.|.|.|..+..
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~--~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR--FVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe--EEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 4478889999999965 578999999999987642 22222 233346899999999999999999999987654
No 220
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.05 E-value=6.1e-05 Score=66.08 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=56.3
Q ss_pred ceeEEccCCeEEEEEEEeccCCCeEEEEECCEEe--------ecCCcEEEEe-cCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI--------FSSRRQRIVT-DNDISTLIIHQAALMDEGEIKCTATNR 530 (1101)
Q Consensus 460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~--------~~~~~~~~~~-~~~~~~l~I~~l~~~d~g~Y~C~a~n~ 530 (1101)
.++++.+|++++|.|.+.+.....+.|++.+..+ ....++.... .+...+|+|.+++..|+|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 4678899999999999998877778888766432 2345666654 456678999999999999999999763
No 221
>PHA03376 BARF1; Provisional
Probab=98.04 E-value=0.00016 Score=68.98 Aligned_cols=123 Identities=20% Similarity=0.291 Sum_probs=75.9
Q ss_pred eEEccCCeEEEEEEEec---cCCCeEEEEECCE----Ee-e------------cCCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139 462 TTALEDEKVEFTVQVEG---IPTPKVSWYKDGF----EI-F------------SSRRQRIVTDNDISTLIIHQAALMDEG 521 (1101)
Q Consensus 462 ~~v~~g~~v~L~C~~~g---~p~~~v~W~~~g~----~~-~------------~~~~~~~~~~~~~~~l~I~~l~~~d~g 521 (1101)
+.+..|+.+.|+|.... .+...|.|++.+. .+ . .-.++.+..+.+..+|.|.+++++|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 45678999999998762 2344799999421 11 0 112334444467779999999999999
Q ss_pred EEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCe
Q psy8139 522 EIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE 587 (1101)
Q Consensus 522 ~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~ 587 (1101)
+|+|............-.|.+..|-......... ....-+...+.|..-|.|.|.++|..+..
T Consensus 101 tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~---dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 101 NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERS---QFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred eEEEEEEcCCCceeeeeeeeeeecceEEEEeccc---cCCCCCeeEEEEecCCcCCchheeccccC
Confidence 9999998765444333333332222111110000 00013456789998899999999987543
No 222
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.03 E-value=1.3e-05 Score=65.33 Aligned_cols=61 Identities=26% Similarity=0.419 Sum_probs=46.2
Q ss_pred CCeEEEEEEE-eccCCCeEEEEECCEEeecCCcEEEEecCCee--EEEEeecCCCCCEEEEEEE
Q psy8139 467 DEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS--TLIIHQAALMDEGEIKCTA 527 (1101)
Q Consensus 467 g~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~--~l~I~~l~~~d~g~Y~C~a 527 (1101)
|++++|.|.+ .+.+.+.+.|.+++..............+... .|.|.++...|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 88888899999988755443333333332211 3999999999999999986
No 223
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.98 E-value=2.6e-05 Score=63.02 Aligned_cols=62 Identities=31% Similarity=0.536 Sum_probs=50.7
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCC
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G 628 (1101)
|+++.|.|.+.+.+.+.+.|++++..+.. .. ........|.|.++...|.|.|+|.+.|..|
T Consensus 2 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~--~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 2 GQSVTLTCPAEGDPVPNITWLKDGKPLPE--SN--RLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CceEEEEeeCccCCCCeEEEEECCEECCC--CC--EEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 77899999988899999999999887762 11 1223356899999999999999999999765
No 224
>smart00409 IG Immunoglobulin.
Probab=97.97 E-value=0.00012 Score=63.27 Aligned_cols=81 Identities=28% Similarity=0.573 Sum_probs=65.9
Q ss_pred eEEeeCCEEEEEEEEeecCCCeeEEEEC-CeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139 558 LLFEMGEIIKLKVSMAGMPPPTARWLHN-GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV 636 (1101)
Q Consensus 558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l 636 (1101)
+.+..|+++.|.|.+.+.+.+.+.|.++ +..+.....+.........+|.|.++...|.|.|.|.+.|..|.......+
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 4677899999999999988999999998 887765556666555546789999999999999999999887776555555
Q ss_pred EE
Q psy8139 637 TV 638 (1101)
Q Consensus 637 ~v 638 (1101)
.|
T Consensus 84 ~V 85 (86)
T smart00409 84 TV 85 (86)
T ss_pred EE
Confidence 44
No 225
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.97 E-value=0.00012 Score=63.27 Aligned_cols=81 Identities=28% Similarity=0.573 Sum_probs=65.9
Q ss_pred eEEeeCCEEEEEEEEeecCCCeeEEEEC-CeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139 558 LLFEMGEIIKLKVSMAGMPPPTARWLHN-GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV 636 (1101)
Q Consensus 558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l 636 (1101)
+.+..|+++.|.|.+.+.+.+.+.|.++ +..+.....+.........+|.|.++...|.|.|.|.+.|..|.......+
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l 83 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL 83 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence 4677899999999999988999999998 887765556666555546789999999999999999999887776555555
Q ss_pred EE
Q psy8139 637 TV 638 (1101)
Q Consensus 637 ~v 638 (1101)
.|
T Consensus 84 ~V 85 (86)
T smart00410 84 TV 85 (86)
T ss_pred EE
Confidence 44
No 226
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.91 E-value=6.1e-05 Score=64.36 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=55.7
Q ss_pred ceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536 (1101)
Q Consensus 460 ~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~ 536 (1101)
.+.++..|+++.|.|...+. .+.+.|+++|..+..+.++.....+ |.|.++.++|+|.|.|.+. ..|....
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~-E~gf~~~ 74 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE-EEGFQQL 74 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe-cCCCeEE
Confidence 46788999999999999876 5599999999988765555544333 8899999999999999987 3344433
No 227
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.90 E-value=5.5e-05 Score=65.69 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=55.7
Q ss_pred CCEEEEEEEEeecC--CCeeEEEECCeecCCC---C--ce-EEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139 563 GEIIKLKVSMAGMP--PPTARWLHNGEPLTSG---G--RY-EITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF 634 (1101)
Q Consensus 563 g~~~~l~c~~~g~p--~~~v~W~~~g~~l~~~---~--~~-~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~ 634 (1101)
|+++.|.|.+.+++ ...+.|..++...... . +. ........+.|.|.+++..|.|.|+|.|.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 67789999999866 4578998876543210 1 00 011122367899999999999999999999998887777
Q ss_pred EEEEe
Q psy8139 635 LVTVT 639 (1101)
Q Consensus 635 ~l~v~ 639 (1101)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77764
No 228
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.88 E-value=0.0002 Score=62.76 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=66.2
Q ss_pred CCeEEeeCCEEEEEEEEeecCCCe-eEEEECCeecCCCCceEEEeec-----ceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139 556 DGLLFEMGEIIKLKVSMAGMPPPT-ARWLHNGEPLTSGGRYEITHTD-----RYLNLRISDARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 556 ~~~~v~~g~~~~l~c~~~g~p~~~-v~W~~~g~~l~~~~~~~~~~~~-----~~~sl~i~~l~~~~~y~y~c~A~N~~G~ 629 (1101)
..+.+..|+.+.|.|.+..+|.|. +.|.+++..+.......+.... -.+.|.+..+...+.|.|+|.|.|..+.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 345788999999999999999998 9999988766433221112111 2478999999999999999999999998
Q ss_pred ceeEEEEEEe
Q psy8139 630 DVASFLVTVT 639 (1101)
Q Consensus 630 ~~~s~~l~v~ 639 (1101)
.+.+..|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8888877764
No 229
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.87 E-value=4.7e-05 Score=65.60 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=52.3
Q ss_pred EEeeCCEEEEEEEEee-cCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139 559 LFEMGEIIKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~ 630 (1101)
.+.+|++++|.|.+.+ .+.+.+.|+++|..+... .....+.|.++++.|+|.|+|.|.|..|..
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 5778999999999854 567789999998766421 124679999999999999999999998854
No 230
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.85 E-value=0.00011 Score=64.57 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=54.7
Q ss_pred eEEeeCCEEEEEEEEeecCCCeeEEEECC--eec----CCCCceEEEeecceEEEEEccCCCCCCeEEEEEEE-eCCCCc
Q psy8139 558 LLFEMGEIIKLKVSMAGMPPPTARWLHNG--EPL----TSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV-NSLGED 630 (1101)
Q Consensus 558 ~~v~~g~~~~l~c~~~g~p~~~v~W~~~g--~~l----~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~-N~~G~~ 630 (1101)
+.+.+|+++.|.|.. +.|.|.++|++.+ ... ..+.++... .++|.|.++++.|+|.|.|.|. |..|..
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~----~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT----ERGLLLRSLQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe----cCeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence 356779999999996 5788999999732 221 112233322 4569999999999999999998 455555
Q ss_pred eeEEEEEEe
Q psy8139 631 VASFLVTVT 639 (1101)
Q Consensus 631 ~~s~~l~v~ 639 (1101)
.....|.|.
T Consensus 81 ~~~~~l~v~ 89 (91)
T cd05871 81 LAKYTLHVI 89 (91)
T ss_pred EEEEEEEEe
Confidence 556666654
No 231
>KOG2128|consensus
Probab=97.85 E-value=0.0015 Score=80.62 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy8139 69 AVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELK-QACVSVQQRWRAN 147 (1101)
Q Consensus 69 a~~iQ~~~R~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~~R~~~~~~~~r~~~~~~~-~aa~~iQ~~~R~~ 147 (1101)
..+.++.++|++.+....-. ..........-+..|+..||...+...-..+...- ....++|+..||+
T Consensus 480 ~~k~~~~~~~~l~~~~~~~~-----------~ee~~~~~~~~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~ 548 (1401)
T KOG2128|consen 480 EMKWLAYIYGNLVREAKKWL-----------LEELHFEYSSLISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGF 548 (1401)
T ss_pred hhhhHHHhhhhhhhhhhccc-----------cHHHHHHHHHHhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhcccc
Confidence 34667778887775543222 22233333444557888887755544444443322 2234559999999
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q psy8139 148 LTMRKQRAHFLLMKQ---KASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRER---YVALRTATITI 221 (1101)
Q Consensus 148 ~~r~~~r~~~~~~~~---aa~~IQ~~~R~~~~rr~~~~~~~~~~~aa~~iQ~~~Rg~~~~~~~r~~---~~~~~~a~i~i 221 (1101)
..|.+.+....-++. ....||+.|||++.--....++.....-+..+|++.||+++++...+. |+....+++.|
T Consensus 549 ~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~i 628 (1401)
T KOG2128|consen 549 STRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKI 628 (1401)
T ss_pred chHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHH
Confidence 988766655444332 788999999999852222345556667888899999999986644333 44455689999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8139 222 QTRFRAYLIAKNQRDE 237 (1101)
Q Consensus 222 Q~~~Rg~~~R~~~~~~ 237 (1101)
|+.+|++..|+.++..
T Consensus 629 qs~~r~f~~r~~y~~L 644 (1401)
T KOG2128|consen 629 QSKIRKFPNRKDYKLL 644 (1401)
T ss_pred HHHHHhcccchHHHHH
Confidence 9999999999888754
No 232
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.85 E-value=0.00015 Score=64.59 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=57.5
Q ss_pred CCeEEeeCCEEEEEEEEeecCCCeeEEEECCee-c-------CCCCceEEEe-ecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139 556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEP-L-------TSGGRYEITH-TDRYLNLRISDARRADRGEYQAHGVNS 626 (1101)
Q Consensus 556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~-l-------~~~~~~~~~~-~~~~~sl~i~~l~~~~~y~y~c~A~N~ 626 (1101)
..+.+..|+++.|.|.+.+.+.+.+.|++.+.. + ....++.+.. .....+|.|.+++..|+|.|.|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 345788899999999999888899999753221 1 1123554422 234568999999999999999999876
Q ss_pred CCCceeEEEEE
Q psy8139 627 LGEDVASFLVT 637 (1101)
Q Consensus 627 ~G~~~~s~~l~ 637 (1101)
.. .+.++.|+
T Consensus 85 ~~-~~~~~~~~ 94 (95)
T cd05717 85 PV-QTAKATVT 94 (95)
T ss_pred CC-ceEEEEEE
Confidence 43 35555554
No 233
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.84 E-value=5e-05 Score=66.65 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=52.6
Q ss_pred EEeeCCEEEEEEEEeecCCCeeEEEECCeec-C-------------CCCceEEEe---ecceEEEEEccCCCCCCeEEEE
Q psy8139 559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPL-T-------------SGGRYEITH---TDRYLNLRISDARRADRGEYQA 621 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l-~-------------~~~~~~~~~---~~~~~sl~i~~l~~~~~y~y~c 621 (1101)
.+..|++++|.|...+.+.+.+.|++++... . ..+++.... ..+..+|+|.+|+..|+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 5677999999999999999999998655221 1 111222222 2335679999999999999999
Q ss_pred EEEeCCCC
Q psy8139 622 HGVNSLGE 629 (1101)
Q Consensus 622 ~A~N~~G~ 629 (1101)
.+.|..+.
T Consensus 83 ~v~~~~~~ 90 (94)
T cd07690 83 EVEDKKEE 90 (94)
T ss_pred EECCccce
Confidence 99988765
No 234
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.82 E-value=4.4e-05 Score=64.47 Aligned_cols=73 Identities=30% Similarity=0.461 Sum_probs=49.7
Q ss_pred CeeeecCceeEEccCCeEEEEEEEeccC-CCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139 453 PSFIRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529 (1101)
Q Consensus 453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n 529 (1101)
|.+...+.......+. +.|.|.+.+.+ .+.++|+ ........ .........+.|.|.++...|.|.|+|.|.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~--~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNS--NSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEE--EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceee--eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 5555555555555555 99999999988 7899999 11111111 1111123345899999999999999999987
No 235
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.78 E-value=5.9e-05 Score=65.87 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=56.0
Q ss_pred CCeEEeeCCEEEEEEE-EeecCCCeeEEEECCee-cCCCCceEEEeecceEEEEEccCCCCCCe-EEEEEEEeCCCC
Q psy8139 556 DGLLFEMGEIIKLKVS-MAGMPPPTARWLHNGEP-LTSGGRYEITHTDRYLNLRISDARRADRG-EYQAHGVNSLGE 629 (1101)
Q Consensus 556 ~~~~v~~g~~~~l~c~-~~g~p~~~v~W~~~g~~-l~~~~~~~~~~~~~~~sl~i~~l~~~~~y-~y~c~A~N~~G~ 629 (1101)
..+.+.+|.++.|.|. ..|.|.|.+.|..++.. +..+.++.+. .++.|.|.+++..|.| .|.|.|.|....
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~---~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG---QNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC---CCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 4568889999999997 68999999999976544 3333443332 2588999999999999 899999998654
No 236
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.77 E-value=9.4e-05 Score=63.37 Aligned_cols=69 Identities=33% Similarity=0.596 Sum_probs=52.8
Q ss_pred EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCC-ceeEEEEE
Q psy8139 559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE-DVASFLVT 637 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~-~~~s~~l~ 637 (1101)
.+..|+.+.|.|.+.+.|.+.+.|++++..+..+ ...+.+..+...+.|.|+|.|.|..|. .+.+..|+
T Consensus 10 ~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~----------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~ 79 (80)
T PF13895_consen 10 SVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS----------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT 79 (80)
T ss_dssp EEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE----------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee----------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence 6788999999999999989999999988665521 112667888999999999999996653 23344443
No 237
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.77 E-value=0.00013 Score=63.93 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=52.8
Q ss_pred EEccCCeEEEEEEE-e----ccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139 463 TALEDEKVEFTVQV-E----GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI 535 (1101)
Q Consensus 463 ~v~~g~~v~L~C~~-~----g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~ 535 (1101)
.+..|.+..|.|.- . ..+.+.++|++++.++........... +.+.|.|.++.++|+|.|+|.+.+..|...
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~-~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK-GSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC-CCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 45678889999962 2 346679999999998864432222111 233799999999999999999999876543
No 238
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.73 E-value=0.00022 Score=62.64 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=57.8
Q ss_pred eeEEccCCeEEEEEEEe-----------ccCCCeEEEEECCEEeecCCc-----EEEEecCCeeEEEEeecCCCCCEEEE
Q psy8139 461 DTTALEDEKVEFTVQVE-----------GIPTPKVSWYKDGFEIFSSRR-----QRIVTDNDISTLIIHQAALMDEGEIK 524 (1101)
Q Consensus 461 ~~~v~~g~~v~L~C~~~-----------g~p~~~v~W~~~g~~~~~~~~-----~~~~~~~~~~~l~I~~l~~~d~g~Y~ 524 (1101)
...+.+|+++.|.|..- ..+...+.|+|++..+..... .++...+. .|.|.++..+|+|.|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYT 86 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEE
Confidence 45688999999999851 122347999999755443221 23443444 8999999999999999
Q ss_pred EEEEeCCCceEEEEEEee
Q psy8139 525 CTATNRAGHSITKARLRL 542 (1101)
Q Consensus 525 C~a~n~~g~~~~s~~l~V 542 (1101)
|.+.|.......+..|+|
T Consensus 87 C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 87 CVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEECCCCcceEEEEEEEC
Confidence 999998877666665554
No 239
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.72 E-value=0.00013 Score=59.50 Aligned_cols=61 Identities=30% Similarity=0.513 Sum_probs=45.6
Q ss_pred CCEEEEEEEE-eecCCCeeEEEECCeecCCCCceEEEeecc-e-EEEEEccCCCCCCeEEEEEE
Q psy8139 563 GEIIKLKVSM-AGMPPPTARWLHNGEPLTSGGRYEITHTDR-Y-LNLRISDARRADRGEYQAHG 623 (1101)
Q Consensus 563 g~~~~l~c~~-~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~-~-~sl~i~~l~~~~~y~y~c~A 623 (1101)
|+.++|.|.+ .+.+...+.|.+++................ . ..|.|.++++.|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6789999999 777889999999987765433222222111 1 13999999999999999986
No 240
>KOG4802|consensus
Probab=97.71 E-value=0.00014 Score=77.23 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=89.8
Q ss_pred eCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc---ccccc--c
Q psy8139 728 RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR---ALHDT--T 802 (1101)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~---~~~~s--~ 802 (1101)
..+...|..+... .....+.++++.||..|.|+|.|+|..|.-.+|.++...-.+.++.+|.+|.+.. ...++ .
T Consensus 193 e~~~thwQtv~~t-~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~ 271 (516)
T KOG4802|consen 193 ELGPTHWQTVEKT-MEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYM 271 (516)
T ss_pred ccccccceeeeec-CCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEE
Confidence 3344577776653 4455889999999999999999999999877777777776665555566666554 11111 2
Q ss_pred eeccccCCCCCCccccceeeeecCcchhHHHHhHhhhceeeEEeeeeccCCCCCCceeeeeccccccCCCCCCCCCccCc
Q psy8139 803 ALEDEKPRNTNNCDYESKRTFQSTSPMLAAFMLLMLFTFIETISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNENESDY 882 (1101)
Q Consensus 803 ~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Y~v~~r~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~ 882 (1101)
.+++|-|+.. +-|+- .|+|.|.--....... ....+.+.-......+..|.|+
T Consensus 272 ~~v~w~P~~s-------------dlPv~------------~Yki~Ws~~v~s~k~~--m~tks~~~k~thq~si~~L~Pn 324 (516)
T KOG4802|consen 272 LKVVWCPSKS-------------DLPVE------------KYKITWSLYVNSAKAS--MITKSSYVKDTHQFSIKELLPN 324 (516)
T ss_pred EEEEeCCCCC-------------CCcce------------eeEEEeehhhhhhhhh--cccccceeeccchhhhhhcCCC
Confidence 3456655322 12333 6777664333111100 0000111100001115555588
Q ss_pred ccce--eeccccccc----CceeecccCCCCccCC
Q psy8139 883 FPEK--TIDESVYGY----DTIVYGYDSDDLDRHY 911 (1101)
Q Consensus 883 t~Y~--V~a~n~~G~----~~~v~~~t~e~~P~~~ 911 (1101)
..|- |+|....|. ++.+..++....|..+
T Consensus 325 s~Y~VevqAi~y~g~~rLksek~~~F~~T~~~l~~ 359 (516)
T KOG4802|consen 325 SSYYVEVQAISYLGSRRLKSEKWMLFNTTLQPLEP 359 (516)
T ss_pred CeEEEEEEEEEeccCcccccceEEEEeeccCcCCC
Confidence 8888 999888886 6655555544444433
No 241
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.70 E-value=0.00024 Score=61.27 Aligned_cols=66 Identities=23% Similarity=0.376 Sum_probs=45.8
Q ss_pred EEEEEEEec-cCCCeEEEEECCEEeecCCcEEE-EecCC----eeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139 470 VEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRI-VTDND----ISTLIIHQAALMDEGEIKCTATNRAGHSI 535 (1101)
Q Consensus 470 v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~-~~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~ 535 (1101)
+.|.|.+.| .|.+.++|+++|..+........ ...++ .+.|.|......+.+.|+|.|.|......
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~ 73 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTG 73 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCC
Confidence 689999987 68889999999988754322111 11221 23677777667788999999998764433
No 242
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.69 E-value=9.6e-05 Score=65.09 Aligned_cols=73 Identities=12% Similarity=0.163 Sum_probs=53.9
Q ss_pred CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR 530 (1101)
Q Consensus 453 P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~ 530 (1101)
|.+...|. ..|..|++++|.|... .+...+.|+++|...... .....+....|.|.++++.|+|.|+|.+.+.
T Consensus 3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 44444553 4688999999999886 566789999998754321 1112344558999999999999999999885
No 243
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.68 E-value=0.0002 Score=65.73 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=56.0
Q ss_pred cCceeEEccCCeEEEEEEEeccCCCeEEEEECCE---Ee-----------ecCCcEEEEec--CCeeEEEEeecCCCCCE
Q psy8139 458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGF---EI-----------FSSRRQRIVTD--NDISTLIIHQAALMDEG 521 (1101)
Q Consensus 458 ~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~---~~-----------~~~~~~~~~~~--~~~~~l~I~~l~~~d~g 521 (1101)
.|..+.+..|++++|.|.+.+.+...+.|++... +. ....++.+... .+...|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 4567789999999999999987888999998431 10 11234444432 35679999999999999
Q ss_pred EEEEEEEeCC
Q psy8139 522 EIKCTATNRA 531 (1101)
Q Consensus 522 ~Y~C~a~n~~ 531 (1101)
.|.|.+.+..
T Consensus 84 ~Y~C~~~~~~ 93 (109)
T cd04983 84 VYFCALSESG 93 (109)
T ss_pred EEEEEEecCC
Confidence 9999998754
No 244
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.64 E-value=0.00022 Score=62.56 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=53.9
Q ss_pred EEeeCCEEEEEEEE-e----ecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139 559 LFEMGEIIKLKVSM-A----GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA 632 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~-~----g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~ 632 (1101)
.+..|....|.|.. . ..+.+.+.|++++.++........ ...+.+.|.|.++.++|+|.|+|.|.|..|....
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~-~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y 83 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFY-SLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY 83 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceE-ecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence 45668888999974 2 235679999999999875432211 1122457999999999999999999999776544
No 245
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.62 E-value=0.00025 Score=59.73 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=47.4
Q ss_pred EEEEEEE-eccCCCeEEEEECCEEeecCCcEEEEec---CCeeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139 470 VEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTD---NDISTLIIHQAALMDEGEIKCTATNRAGHS 534 (1101)
Q Consensus 470 v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~---~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~ 534 (1101)
++|+|.. .|.|++.|+|++++..+..... ....+ ...++|.+.....+|.+.|+|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 6899977 5789999999999998864321 00000 123478888888999999999999988764
No 246
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.60 E-value=7.8e-05 Score=44.89 Aligned_cols=21 Identities=38% Similarity=0.782 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q psy8139 277 HQCAVKIQSLWKMYRVRKKFA 297 (1101)
Q Consensus 277 ~~aa~~iQs~~r~~~~r~~~~ 297 (1101)
+.||+.||+.||||+.|++|.
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999884
No 247
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.60 E-value=0.00026 Score=65.08 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=54.1
Q ss_pred ecCceeEEccCCeEEEEEEEeccCCCeEEEEECCE---E--ee-------------cCCcEEEEecC-CeeEEEEeecCC
Q psy8139 457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGF---E--IF-------------SSRRQRIVTDN-DISTLIIHQAAL 517 (1101)
Q Consensus 457 ~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~---~--~~-------------~~~~~~~~~~~-~~~~l~I~~l~~ 517 (1101)
..|..+.+.+|++++|.|...+ +.+.+.|++... + +. ...++...... ....|+|.++.+
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 3466778999999999999988 777899998431 1 10 01334333332 456899999999
Q ss_pred CCCEEEEEEEEeCC
Q psy8139 518 MDEGEIKCTATNRA 531 (1101)
Q Consensus 518 ~d~g~Y~C~a~n~~ 531 (1101)
+|+|.|.|.+.+..
T Consensus 82 ~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 82 EDSAVYLCASSLGG 95 (110)
T ss_pred hhCEEEEEEeeCCC
Confidence 99999999998653
No 248
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.59 E-value=0.00044 Score=63.03 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=54.0
Q ss_pred eecCceeEEccCCeEEEEEEEeccC-CCeEEEEECC--E---Eee---------cCCcEEEEecCCeeEEEEeecCCCCC
Q psy8139 456 IRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKDG--F---EIF---------SSRRQRIVTDNDISTLIIHQAALMDE 520 (1101)
Q Consensus 456 ~~~p~~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~g--~---~~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~ 520 (1101)
...|..+.+.+|++++|.|.+.+.. ...+.|++.. . .+. ...++.....+....|+|.++.++|+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 3456677899999999999987665 5679999742 1 111 01244443344556899999999999
Q ss_pred EEEEEEEEeC
Q psy8139 521 GEIKCTATNR 530 (1101)
Q Consensus 521 g~Y~C~a~n~ 530 (1101)
|.|.|.+.+.
T Consensus 84 g~Y~Ca~~~~ 93 (106)
T cd04980 84 AVYYCQQYGT 93 (106)
T ss_pred EEEEEEEeCC
Confidence 9999998654
No 249
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.53 E-value=0.00056 Score=62.32 Aligned_cols=78 Identities=12% Similarity=0.173 Sum_probs=53.3
Q ss_pred cCCeEEEEEEEeccC------------CCeEEEEEC--CE--E-ee---------c--CCcEEEEe---cCCeeEEEEee
Q psy8139 466 EDEKVEFTVQVEGIP------------TPKVSWYKD--GF--E-IF---------S--SRRQRIVT---DNDISTLIIHQ 514 (1101)
Q Consensus 466 ~g~~v~L~C~~~g~p------------~~~v~W~~~--g~--~-~~---------~--~~~~~~~~---~~~~~~l~I~~ 514 (1101)
.|++++|.|...... .+.|.|++. |. . +. . ..++.+.. ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 378999999886432 458999984 21 1 10 0 12444432 33567999999
Q ss_pred cCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139 515 AALMDEGEIKCTATNRAGHSITKARLRLE 543 (1101)
Q Consensus 515 l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~ 543 (1101)
+..+|+|.|.|.+.+..........|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999776666666666654
No 250
>KOG0164|consensus
Probab=97.52 E-value=0.00073 Score=76.77 Aligned_cols=54 Identities=41% Similarity=0.648 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 40 SKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKA 119 (1101)
Q Consensus 40 ~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~~R~ 119 (1101)
.-++.||++|||++ +|.+|++++.+++.|+ |||.+ +.+..+..||+.+||
T Consensus 697 ~lvtllQK~~RG~~----~R~ry~rmka~~~ii~-wyR~~-------------------------K~ks~v~el~~~~rg 746 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWL----ARQRYRRMKASATIIR-WYRRY-------------------------KLKSYVQELQRRFRG 746 (1001)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-HHHHH-------------------------HHHHHHHHHHHHHHh
Confidence 66777888888888 7888888887777777 77754 334456677777775
Q ss_pred HHHH
Q psy8139 120 KLLM 123 (1101)
Q Consensus 120 ~~~~ 123 (1101)
+..|
T Consensus 747 ~k~~ 750 (1001)
T KOG0164|consen 747 AKQM 750 (1001)
T ss_pred hhhc
Confidence 5433
No 251
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.51 E-value=0.00074 Score=61.52 Aligned_cols=78 Identities=19% Similarity=0.362 Sum_probs=54.3
Q ss_pred cCCeEEEEEEEeccC------CCeEEEEECC-----E-Eee--cCC--------cEEEE---ecCCeeEEEEeecCCCCC
Q psy8139 466 EDEKVEFTVQVEGIP------TPKVSWYKDG-----F-EIF--SSR--------RQRIV---TDNDISTLIIHQAALMDE 520 (1101)
Q Consensus 466 ~g~~v~L~C~~~g~p------~~~v~W~~~g-----~-~~~--~~~--------~~~~~---~~~~~~~l~I~~l~~~d~ 520 (1101)
.|++++|.|.....+ .+.|.|++.. . .+. ... +.++. ...+..+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 388999999987653 4589999862 1 111 111 11111 123556999999999999
Q ss_pred EEEEEEEEeCCCceEEEEEEeec
Q psy8139 521 GEIKCTATNRAGHSITKARLRLE 543 (1101)
Q Consensus 521 g~Y~C~a~n~~g~~~~s~~l~V~ 543 (1101)
|.|.|.+.+..+.......|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEE
Confidence 99999999987776777777765
No 252
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=97.51 E-value=0.0007 Score=58.33 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=46.6
Q ss_pred EEEEEEEee-cCCCeeEEEECCeecCCCCceE-EEeecc----eEEEEEccCCCCCCeEEEEEEEeCCCCcee
Q psy8139 566 IKLKVSMAG-MPPPTARWLHNGEPLTSGGRYE-ITHTDR----YLNLRISDARRADRGEYQAHGVNSLGEDVA 632 (1101)
Q Consensus 566 ~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~-~~~~~~----~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~ 632 (1101)
+.|.|.+.| .|.+.++|+++|.++..+.... ....+. .+.|.+......+.+.|+|.|.|.......
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~ 74 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGK 74 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCc
Confidence 579999987 5888999999999876432211 111111 245777777677889999999998655433
No 253
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.49 E-value=0.0012 Score=60.77 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=52.4
Q ss_pred cCceeEEccCCeEEEEEEEecc----CCCeEEEEE---------------CCEEee-cC----CcEEEEe--cCCeeEEE
Q psy8139 458 ALHDTTALEDEKVEFTVQVEGI----PTPKVSWYK---------------DGFEIF-SS----RRQRIVT--DNDISTLI 511 (1101)
Q Consensus 458 ~p~~~~v~~g~~v~L~C~~~g~----p~~~v~W~~---------------~g~~~~-~~----~~~~~~~--~~~~~~l~ 511 (1101)
.+..+.+..|+++.|.|..... +...|+|.. +|.... .. ++..+.. ..+..++.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 3556788999999999998653 234799933 233221 11 2333322 23456899
Q ss_pred EeecCCCCCEEEEEEEEeCCCc
Q psy8139 512 IHQAALMDEGEIKCTATNRAGH 533 (1101)
Q Consensus 512 I~~l~~~d~g~Y~C~a~n~~g~ 533 (1101)
|.+++.+|.|.|+|.+.|..+.
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred EccCCcccCEEEEEEEEcCCCc
Confidence 9999999999999999987654
No 254
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.45 E-value=0.00019 Score=43.22 Aligned_cols=18 Identities=44% Similarity=0.816 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8139 13 AKTILIQTLWRSKLAMRR 30 (1101)
Q Consensus 13 ~aa~~iQ~~~Rg~~~r~~ 30 (1101)
+||+.||+.|||+++|++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555555555555443
No 255
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.44 E-value=0.00099 Score=58.48 Aligned_cols=70 Identities=13% Similarity=0.263 Sum_probs=54.8
Q ss_pred CCeEEeeCCEEEEEEEEeecCCCeeEEEECCeec--------CCCCceEEEe-ecceEEEEEccCCCCCCeEEEEEEEe
Q psy8139 556 DGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL--------TSGGRYEITH-TDRYLNLRISDARRADRGEYQAHGVN 625 (1101)
Q Consensus 556 ~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~-~~~~~sl~i~~l~~~~~y~y~c~A~N 625 (1101)
.++.+.+|+++.|.|.+.+.....+.|++.+..+ ..+.++.... ++...+|.|.+++..|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 3567889999999999999877788888755322 2455666554 45566899999999999999999864
No 256
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.41 E-value=0.00074 Score=62.74 Aligned_cols=72 Identities=22% Similarity=0.352 Sum_probs=53.6
Q ss_pred cCceeEEccCCeEEEEEEEec--cCCCeEEEEEC--CE-E--ee--------------cCCcEEEEecC--CeeEEEEee
Q psy8139 458 ALHDTTALEDEKVEFTVQVEG--IPTPKVSWYKD--GF-E--IF--------------SSRRQRIVTDN--DISTLIIHQ 514 (1101)
Q Consensus 458 ~p~~~~v~~g~~v~L~C~~~g--~p~~~v~W~~~--g~-~--~~--------------~~~~~~~~~~~--~~~~l~I~~ 514 (1101)
.|..+.+..|++++|.|...+ .+.+.+.|++. +. + +. ...++.+.... ....|+|.+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 355677889999999999987 67778999984 21 1 00 12455554444 567899999
Q ss_pred cCCCCCEEEEEEEEe
Q psy8139 515 AALMDEGEIKCTATN 529 (1101)
Q Consensus 515 l~~~d~g~Y~C~a~n 529 (1101)
+..+|+|.|.|.+..
T Consensus 84 ~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 84 LEKEDSATYYCAYWE 98 (116)
T ss_pred CCHHHCEEEEEEEec
Confidence 999999999999864
No 257
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.41 E-value=0.00082 Score=56.64 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=48.4
Q ss_pred EEEEEEEe-ecCCCeeEEEECCeecCCCCceEEEe--ecceEEEEEccCCCCCCeEEEEEEEeCCCCce
Q psy8139 566 IKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITH--TDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631 (1101)
Q Consensus 566 ~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~~--~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~ 631 (1101)
++|.|... +.|.+.+.|++++.++.......... ....++|.|......+.+.|+|.|.|..+.+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~ 70 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQ 70 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCC
Confidence 57899887 56899999999999986432100000 01245788888888999999999999988653
No 258
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.39 E-value=0.0012 Score=59.39 Aligned_cols=76 Identities=18% Similarity=0.367 Sum_probs=48.1
Q ss_pred CCeEEEEEEEeccCC---CeEEEEECCE--Ee---------ec------CCcEEEEe---cCCeeEEEEeecCCCCCEEE
Q psy8139 467 DEKVEFTVQVEGIPT---PKVSWYKDGF--EI---------FS------SRRQRIVT---DNDISTLIIHQAALMDEGEI 523 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~---~~v~W~~~g~--~~---------~~------~~~~~~~~---~~~~~~l~I~~l~~~d~g~Y 523 (1101)
|++++|.|...+... ..+.|++... .+ .. ..+..+.. ..+..+|.|.++...|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 567888887753221 2577776431 11 10 02333321 13456899999999999999
Q ss_pred EEEEEeCCCceEEEEEEee
Q psy8139 524 KCTATNRAGHSITKARLRL 542 (1101)
Q Consensus 524 ~C~a~n~~g~~~~s~~l~V 542 (1101)
.|.+.|..+.......|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776555555554
No 259
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.38 E-value=0.00077 Score=57.69 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=55.9
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEE
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF 634 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~ 634 (1101)
...+..|+.+.|.|...+. .+.+.|.++|.++..+.++.... ..+.|..+.+.|+|.|.|.+. ..|.....+
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~----~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~ 76 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGT----DGLLILVTSPEHSGTYRCYSE-EEGFQQLVA 76 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeC----CCCEEEECCHhhCEEEEEEEe-cCCCeEEEE
Confidence 3477889999999998875 67999999999987665555443 337899999999999999986 445544433
No 260
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.38 E-value=0.0006 Score=62.03 Aligned_cols=70 Identities=20% Similarity=0.266 Sum_probs=51.5
Q ss_pred EEccCCeEEEEEEEecc-CCCeEEEEECCE-----Eee------------cCCcEEEEecC--CeeEEEEeecCCCCCEE
Q psy8139 463 TALEDEKVEFTVQVEGI-PTPKVSWYKDGF-----EIF------------SSRRQRIVTDN--DISTLIIHQAALMDEGE 522 (1101)
Q Consensus 463 ~v~~g~~v~L~C~~~g~-p~~~v~W~~~g~-----~~~------------~~~~~~~~~~~--~~~~l~I~~l~~~d~g~ 522 (1101)
.+..|++++|.|...+. +...+.|++... .+. ...++.+.... +..+|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57789999999999876 667899998432 110 11334433333 56799999999999999
Q ss_pred EEEEEEeCCC
Q psy8139 523 IKCTATNRAG 532 (1101)
Q Consensus 523 Y~C~a~n~~g 532 (1101)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987664
No 261
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.36 E-value=0.0011 Score=60.47 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=54.3
Q ss_pred cCCeEEEEEEEeccC------CCeEEEEECCE------E-e-ec----------CCcEEEEec-CCeeEEEEeecCCCCC
Q psy8139 466 EDEKVEFTVQVEGIP------TPKVSWYKDGF------E-I-FS----------SRRQRIVTD-NDISTLIIHQAALMDE 520 (1101)
Q Consensus 466 ~g~~v~L~C~~~g~p------~~~v~W~~~g~------~-~-~~----------~~~~~~~~~-~~~~~l~I~~l~~~d~ 520 (1101)
.|++++|.|.....| ...|.|++... . + .. ..++.+... .+..+|.|.++..+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 488999999887653 34699998531 1 1 00 123333211 3356899999999999
Q ss_pred EEEEEEEEeCCCceEEEEEEeec
Q psy8139 521 GEIKCTATNRAGHSITKARLRLE 543 (1101)
Q Consensus 521 g~Y~C~a~n~~g~~~~s~~l~V~ 543 (1101)
|.|.|.+.+..+.......|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999988877777777764
No 262
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.36 E-value=0.001 Score=59.79 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=47.6
Q ss_pred eEEccCCeEEEEEEEeccCCCeEEEEECCE-----Eee--------------cCCcEEEEecCCeeEEEEeecCCCCCEE
Q psy8139 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGF-----EIF--------------SSRRQRIVTDNDISTLIIHQAALMDEGE 522 (1101)
Q Consensus 462 ~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~-----~~~--------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~ 522 (1101)
..+.+|+++.|.|.....+...++|++... .+. ..++..+..++ +|.|.+++..|+|.
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G~ 84 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTGF 84 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCEE
Confidence 357889999999975433444899999521 111 11233333323 89999999999999
Q ss_pred EEEEEEeCCC
Q psy8139 523 IKCTATNRAG 532 (1101)
Q Consensus 523 Y~C~a~n~~g 532 (1101)
|+|.+.+..+
T Consensus 85 Y~~~v~~~~~ 94 (105)
T cd05774 85 YTLQTITTNF 94 (105)
T ss_pred EEEEEEeCCc
Confidence 9999998764
No 263
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.34 E-value=0.00084 Score=57.10 Aligned_cols=68 Identities=34% Similarity=0.596 Sum_probs=48.8
Q ss_pred CCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCC---CceeecccccCccEEEEcCCCCCceEEEEEEEEcCCcc
Q psy8139 699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP---YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF 770 (1101)
Q Consensus 699 ~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~ 770 (1101)
.+++++.|+|++|...++ .+|.+.|...... .|...... .....+.+.+|.|++.|.|+|.|.+..|.
T Consensus 12 ~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~Y~v~v~a~~~~g~ 82 (83)
T smart00060 12 VTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVT-PSSTSYTLTGLKPGTEYEFRVRAVNGAGE 82 (83)
T ss_pred EeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEec-CCccEEEEeCcCCCCEEEEEEEEEcccCC
Confidence 345589999998754432 6787777755432 35544432 23578999999999999999999998664
No 264
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.31 E-value=0.0017 Score=59.93 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=50.7
Q ss_pred cCceeEEccCCeEEEEEEEeccC----CCeEEEEEC----CEE--ee---------cC----CcEEEEe--cCCeeEEEE
Q psy8139 458 ALHDTTALEDEKVEFTVQVEGIP----TPKVSWYKD----GFE--IF---------SS----RRQRIVT--DNDISTLII 512 (1101)
Q Consensus 458 ~p~~~~v~~g~~v~L~C~~~g~p----~~~v~W~~~----g~~--~~---------~~----~~~~~~~--~~~~~~l~I 512 (1101)
.|..+.+..|++++|.|.....+ ...|.|++. +.. +. .. .+..+.. ..+..+|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 35677899999999999876433 236999751 111 10 01 1111111 123458999
Q ss_pred eecCCCCCEEEEEEEEeCCCc
Q psy8139 513 HQAALMDEGEIKCTATNRAGH 533 (1101)
Q Consensus 513 ~~l~~~d~g~Y~C~a~n~~g~ 533 (1101)
.+++.+|+|.|.|.+.|..+.
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eeCChhhCEEEEEEEEeCCCC
Confidence 999999999999999987653
No 265
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.22 E-value=0.0021 Score=58.71 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=53.4
Q ss_pred CCeEEEEEEEeccC----------CCeEEEEEC--CEEe--e---------c---CCcEEEE---ecCCeeEEEEeecCC
Q psy8139 467 DEKVEFTVQVEGIP----------TPKVSWYKD--GFEI--F---------S---SRRQRIV---TDNDISTLIIHQAAL 517 (1101)
Q Consensus 467 g~~v~L~C~~~g~p----------~~~v~W~~~--g~~~--~---------~---~~~~~~~---~~~~~~~l~I~~l~~ 517 (1101)
|++++|.|.....+ ...|.|++. +... . . .++..+. ...+..+|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 78899999886544 256999984 2110 0 0 1233332 123557899999999
Q ss_pred CCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139 518 MDEGEIKCTATNRAGHSITKARLRLE 543 (1101)
Q Consensus 518 ~d~g~Y~C~a~n~~g~~~~s~~l~V~ 543 (1101)
+|+|.|.|.+....+.......|.|.
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 99999999999877677777777765
No 266
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=97.21 E-value=0.0025 Score=55.70 Aligned_cols=76 Identities=38% Similarity=0.697 Sum_probs=57.1
Q ss_pred CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139 359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG 435 (1101)
Q Consensus 359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s 435 (1101)
.....++.|+|.++.... ..+..|.|.+.......|............+.|.+|.|++.|.+++.|.+..|.+.++
T Consensus 11 ~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~s 86 (93)
T cd00063 11 DVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPS 86 (93)
T ss_pred EecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCccCCCc
Confidence 445799999999985432 3577999999876545666554332355789999999999999999999887766443
No 267
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.20 E-value=0.0022 Score=57.37 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=48.8
Q ss_pred CeEEEEEEEeccC---CCeEEEEECCEE----e-----------ec--CCcEEEEecC-CeeEEEEeecCCCCCEEEEEE
Q psy8139 468 EKVEFTVQVEGIP---TPKVSWYKDGFE----I-----------FS--SRRQRIVTDN-DISTLIIHQAALMDEGEIKCT 526 (1101)
Q Consensus 468 ~~v~L~C~~~g~p---~~~v~W~~~g~~----~-----------~~--~~~~~~~~~~-~~~~l~I~~l~~~d~g~Y~C~ 526 (1101)
++++|.|.....+ ...|.|++.... + .. ..+..+.... +..+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4688999887654 336999985421 1 01 1111222111 356899999999999999999
Q ss_pred EEe-CCCceEEEEEEee
Q psy8139 527 ATN-RAGHSITKARLRL 542 (1101)
Q Consensus 527 a~n-~~g~~~~s~~l~V 542 (1101)
+.+ ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 876 5566666666665
No 268
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.20 E-value=0.002 Score=57.75 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=49.8
Q ss_pred EEccCCeEEEEEEEecc--CCCeEEEEECCE---E--ee---------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139 463 TALEDEKVEFTVQVEGI--PTPKVSWYKDGF---E--IF---------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCT 526 (1101)
Q Consensus 463 ~v~~g~~v~L~C~~~g~--p~~~v~W~~~g~---~--~~---------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~ 526 (1101)
.+..|++++|.|...+. ....+.|++... + +. ...++.....+....|+|.+++++|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998765 456799998321 1 11 12355555555667899999999999999999
Q ss_pred EEeC
Q psy8139 527 ATNR 530 (1101)
Q Consensus 527 a~n~ 530 (1101)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8653
No 269
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.20 E-value=0.0011 Score=58.21 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=49.9
Q ss_pred EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139 559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~ 626 (1101)
.+..|++++|.|... .+...+.|+++|...... .....+....+.|.++++.+.|.|+|...|.
T Consensus 12 vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 12 VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred ccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 577899999999875 667789999998754321 1122344678999999999999999999886
No 270
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.19 E-value=0.0017 Score=57.85 Aligned_cols=78 Identities=13% Similarity=0.262 Sum_probs=51.4
Q ss_pred ccCCeEEEEEEEec-cCCCeEEEEECCEEee-c------------CCc--EEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139 465 LEDEKVEFTVQVEG-IPTPKVSWYKDGFEIF-S------------SRR--QRIVTDNDISTLIIHQAALMDEGEIKCTAT 528 (1101)
Q Consensus 465 ~~g~~v~L~C~~~g-~p~~~v~W~~~g~~~~-~------------~~~--~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~ 528 (1101)
..|++|+|.|.... .....+.|++....+. . ... .++....+..+|+|.++..+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36899999997754 4445789998643211 0 011 122223445689999999999999999999
Q ss_pred eCCCceE-EEEEEee
Q psy8139 529 NRAGHSI-TKARLRL 542 (1101)
Q Consensus 529 n~~g~~~-~s~~l~V 542 (1101)
+..|... ....|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 8876543 2344444
No 271
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.19 E-value=0.0011 Score=58.52 Aligned_cols=68 Identities=10% Similarity=0.092 Sum_probs=47.8
Q ss_pred eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529 (1101)
Q Consensus 461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n 529 (1101)
...|..|++++|.|.... +...+.|+++|...................|.|..++++|+|.|.|....
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 456889999999998765 45579999988653211000011123345899999999999999999753
No 272
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.18 E-value=0.0019 Score=56.86 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=55.0
Q ss_pred eEEeeCCEEEEEEEEe-----------ecCCCeeEEEECCeecCCCCceE---EEeecceEEEEEccCCCCCCeEEEEEE
Q psy8139 558 LLFEMGEIIKLKVSMA-----------GMPPPTARWLHNGEPLTSGGRYE---ITHTDRYLNLRISDARRADRGEYQAHG 623 (1101)
Q Consensus 558 ~~v~~g~~~~l~c~~~-----------g~p~~~v~W~~~g~~l~~~~~~~---~~~~~~~~sl~i~~l~~~~~y~y~c~A 623 (1101)
..+.+|+++.|.|... ......+.|++++..+....... .........|.|.++..+|+|.|+|.+
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~ 89 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL 89 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence 4677899999999862 12234899999975554322110 011223668999999999999999999
Q ss_pred EeCCCCceeEEEEE
Q psy8139 624 VNSLGEDVASFLVT 637 (1101)
Q Consensus 624 ~N~~G~~~~s~~l~ 637 (1101)
.|.......+..|+
T Consensus 90 rN~t~C~~~~i~l~ 103 (104)
T cd05896 90 RNSTYCMKVSMSLT 103 (104)
T ss_pred CCCCcceEEEEEEE
Confidence 99876555555444
No 273
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.08 E-value=0.0021 Score=56.74 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=46.2
Q ss_pred CCeEEEEEEEeccCCCeEEEEECCEEee------------------cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEE
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDGFEIF------------------SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT 528 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~------------------~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~ 528 (1101)
|++|+|.|.....+...+.|++...... ...+..+..+ .+|.|.+++..|+|.|.|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEEEE
Confidence 6889999988776666899998542210 0122222222 589999999999999999998
Q ss_pred eCCCce
Q psy8139 529 NRAGHS 534 (1101)
Q Consensus 529 n~~g~~ 534 (1101)
...|..
T Consensus 78 ~~~~~~ 83 (92)
T cd05741 78 STNGVT 83 (92)
T ss_pred cCCCcE
Confidence 876543
No 274
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.05 E-value=0.0012 Score=55.51 Aligned_cols=60 Identities=28% Similarity=0.521 Sum_probs=42.7
Q ss_pred CCEEEEEEEEeecC-CCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEe
Q psy8139 563 GEIIKLKVSMAGMP-PPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625 (1101)
Q Consensus 563 g~~~~l~c~~~g~p-~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N 625 (1101)
+..+.|.|.+.+.+ .+.+.|+ ....... ............|.|.++...+.|.|+|.|.|
T Consensus 15 ~~~~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 15 GGSVTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp TEEEEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeEEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 33399999999888 8899999 1111110 11122233467899999999999999999987
No 275
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.05 E-value=0.0039 Score=57.78 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=50.5
Q ss_pred cCceeEEccCCeEEEEEEEeccC----CCeEEEEECCE------Eee----------cC----CcEEEEe--cCCeeEEE
Q psy8139 458 ALHDTTALEDEKVEFTVQVEGIP----TPKVSWYKDGF------EIF----------SS----RRQRIVT--DNDISTLI 511 (1101)
Q Consensus 458 ~p~~~~v~~g~~v~L~C~~~g~p----~~~v~W~~~g~------~~~----------~~----~~~~~~~--~~~~~~l~ 511 (1101)
.|..+.+..|++++|.|...... ...+.|++... .+. .. .+..+.. ..+..+|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 35677889999999999886432 24699986211 110 01 1122221 12346899
Q ss_pred EeecCCCCCEEEEEEEEeCCCc
Q psy8139 512 IHQAALMDEGEIKCTATNRAGH 533 (1101)
Q Consensus 512 I~~l~~~d~g~Y~C~a~n~~g~ 533 (1101)
|.+++.+|+|.|.|.+.|..+.
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCCC
Confidence 9999999999999999986553
No 276
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.03 E-value=0.0066 Score=55.93 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=53.5
Q ss_pred cCceeEEccCCeEEEEEEEe-ccCCCeEEEEECCE-----Eee--------------cCCcEEEEec--CCeeEEEEeec
Q psy8139 458 ALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGF-----EIF--------------SSRRQRIVTD--NDISTLIIHQA 515 (1101)
Q Consensus 458 ~p~~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~-----~~~--------------~~~~~~~~~~--~~~~~l~I~~l 515 (1101)
.|..+.+..|++++|.|... ......+.|++... .+. ...+..+..+ ....+|.|.++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 46678899999999999998 45566899998221 111 0123333333 34678999999
Q ss_pred CCCCCEEEEEEEEeC
Q psy8139 516 ALMDEGEIKCTATNR 530 (1101)
Q Consensus 516 ~~~d~g~Y~C~a~n~ 530 (1101)
...|+|.|.|.+...
T Consensus 87 ~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTS 101 (114)
T ss_dssp SGGGEEEEEEEEEES
T ss_pred CcCcCEEEEEEEEEC
Confidence 999999999999887
No 277
>KOG0165|consensus
Probab=97.01 E-value=0.1 Score=60.46 Aligned_cols=220 Identities=16% Similarity=0.140 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 4 CRSDYLNLRAKTILIQTLWRSKLAMRRDERE--FC--------MIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQ 73 (1101)
Q Consensus 4 ~r~~~~~~~~aa~~iQ~~~Rg~~~r~~~~~~--~~--------~~~~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ 73 (1101)
.+..+-.+.+.....|+--+|+..++++..+ +. .+..-|..+|..+-|++ .-..-.....+++-+=
T Consensus 419 ~~i~~S~~~~~~~~~~a~~~g~~v~~~V~~~~~~~~~~~~~~~~~~l~aL~~~~~y~~~l----~~~na~~~~~SvicLL 494 (1023)
T KOG0165|consen 419 ERIKYSEFKKSTVILQALVRGWLVRKRVEQRAKIRLLHFTAAAYYHLNALRIQRAYKLYL----AVKNANKQVNSVICLL 494 (1023)
T ss_pred ccchhHHHHHHHHHHHhcccceeechhhhhcCCHHHHHHHHHHHHHHHHHhhhhhhhHHH----HHHHhccccchhHHHH
Confidence 3455667788888889999999888865432 11 12234566777777777 3333333334555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 74 EWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQ 153 (1101)
Q Consensus 74 ~~~R~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~iQ~~~R~~~~~~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~~ 153 (1101)
++.+..+.-+...-.|-......-...........+-..+|...+.+..+...|... -..+.+|+.|+++.-+...
T Consensus 495 A~L~s~l~~k~~~~~~~~~~~L~~~V~S~~~~~~~~Q~~~~k~~~~f~~~~~~R~~~----I~i~~~~a~~~~~~w~~~~ 570 (1023)
T KOG0165|consen 495 AWLRARLQEKRFIQKYHSIKKLEHEVQSCLSQRNRAQSVIQKAVRHFLLRKKQRKFT----IGIIKIQALWRGYSWRKKN 570 (1023)
T ss_pred HHHHHHHhcccchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHhhhhhhhh
Confidence 555554433222111111111111111111122233445566666554343333222 2234556666655533211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 154 RAHFLLMKQKASVIQQWYRNTKLMRL-----------------------EASYLHELKAATITIQRRYRANVAMRTQRER 210 (1101)
Q Consensus 154 r~~~~~~~~aa~~IQ~~~R~~~~rr~-----------------------~~~~~~~~~~aa~~iQ~~~Rg~~~~~~~r~~ 210 (1101)
.. ....+--..||.+|+-...-+. ...++.-...++..+|...+|..+ +..
T Consensus 571 ~~--~~~~K~~~~iq~~~~D~~~~n~iS~~~aN~~~~~~~~~R~~~~~e~~~~l~~~~~~~~~~~~n~~~~~a----~si 644 (1023)
T KOG0165|consen 571 DC--TKIKKIRLSLQVVNRDIREENKLSKRTANALHYLLTYKRLSAILEALKHLEVVTRLSPLCCENMAQSGA----ISI 644 (1023)
T ss_pred cc--cccHHHHHHHHHHHHHhhcccccCcccccceeeeccccchhhhhhhHHHhhHHHHhhHHHhhhhhhhch----hhH
Confidence 11 1111223457777775532111 122333344677779999998888 556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 211 YVALRTATITIQTRFRAYLIAKNQRDE 237 (1101)
Q Consensus 211 ~~~~~~a~i~iQ~~~Rg~~~R~~~~~~ 237 (1101)
+.....+...+|+.+|.++.++..+..
T Consensus 645 e~~~~~~~~~Lr~~~~~~~i~~~Iqv~ 671 (1023)
T KOG0165|consen 645 EKIFVLIRSCLRSIPCMEVIRYAIQVL 671 (1023)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 666677889999999999988877643
No 278
>KOG4367|consensus
Probab=97.01 E-value=0.00077 Score=71.68 Aligned_cols=75 Identities=23% Similarity=0.311 Sum_probs=64.0
Q ss_pred CCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCC
Q psy8139 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGP 775 (1101)
Q Consensus 698 ~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~ 775 (1101)
....++++|+|..|..+ +.+..||.++....+++.+..+.. +..+..+|.||.-++.|.-||.|+|..|.++.|.
T Consensus 449 ~t~nns~t~~wkqp~~~-~~~~dg~~leld~g~~g~frevy~--g~etmctvdglhfns~y~arvka~n~tg~s~ys~ 523 (699)
T KOG4367|consen 449 CTHNNSATLSWKQPPLS-TVPADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSK 523 (699)
T ss_pred hccCCceEEEeecCCCC-CCCCcceEEEeecCCCCceeEEEe--cCceeEEecceecchhHHHHHHHhhccCCCcccc
Confidence 34678999999966433 467899999999888888888776 8899999999999999999999999999977654
No 279
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.01 E-value=0.0047 Score=56.30 Aligned_cols=78 Identities=17% Similarity=0.301 Sum_probs=55.2
Q ss_pred CCEEEEEEEEeecC------------CCeeEEEEC--Cee---cC-----------CCCceEEEe---ecceEEEEEccC
Q psy8139 563 GEIIKLKVSMAGMP------------PPTARWLHN--GEP---LT-----------SGGRYEITH---TDRYLNLRISDA 611 (1101)
Q Consensus 563 g~~~~l~c~~~g~p------------~~~v~W~~~--g~~---l~-----------~~~~~~~~~---~~~~~sl~i~~l 611 (1101)
|++++|.|...... .+.+.|++- |.. +. ...++.+.. ..+..+|.|.+|
T Consensus 2 G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~nl 81 (112)
T cd05900 2 GSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITEL 81 (112)
T ss_pred CCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEeec
Confidence 78899999887543 468999973 210 10 012333332 335789999999
Q ss_pred CCCCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139 612 RRADRGEYQAHGVNSLGEDVASFLVTVTD 640 (1101)
Q Consensus 612 ~~~~~y~y~c~A~N~~G~~~~s~~l~v~~ 640 (1101)
+.+|+|.|+|.+.+..........|.|.+
T Consensus 82 ~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 82 RSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred ccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 99999999999998777777777777764
No 280
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.99 E-value=0.0038 Score=57.22 Aligned_cols=72 Identities=22% Similarity=0.222 Sum_probs=53.7
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCee---c-----------CCCCceEEEee--cceEEEEEccCCCCCCeEEE
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEP---L-----------TSGGRYEITHT--DRYLNLRISDARRADRGEYQ 620 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~---l-----------~~~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~ 620 (1101)
.+.+..|++++|.|...+.+...+.|++.... . ...+++.+... ....+|.|.++++.|+|.|.
T Consensus 7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~ 86 (109)
T cd04983 7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYF 86 (109)
T ss_pred ceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEE
Confidence 45788899999999999888889999974211 0 11234444332 35778999999999999999
Q ss_pred EEEEeCCC
Q psy8139 621 AHGVNSLG 628 (1101)
Q Consensus 621 c~A~N~~G 628 (1101)
|.+.+..+
T Consensus 87 C~~~~~~~ 94 (109)
T cd04983 87 CALSESGG 94 (109)
T ss_pred EEEecCCC
Confidence 99987643
No 281
>KOG0164|consensus
Probab=96.96 E-value=0.013 Score=67.21 Aligned_cols=60 Identities=37% Similarity=0.631 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 133 LKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQR 208 (1101)
Q Consensus 133 ~~~aa~~iQ~~~R~~~~r~~~r~~~~~~~~aa~~IQ~~~R~~~~rr~~~~~~~~~~~aa~~iQ~~~Rg~~~~~~~r 208 (1101)
+..-+..||..|||+++ |.+|++++++++.|+ |||.|+. +..+-.||+.+||+..|+..+
T Consensus 695 l~~lvtllQK~~RG~~~----R~ry~rmka~~~ii~-wyR~~K~-----------ks~v~el~~~~rg~k~~r~yg 754 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLA----RQRYRRMKASATIIR-WYRRYKL-----------KSYVQELQRRFRGAKQMRDYG 754 (1001)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHH-----------HHHHHHHHHHHHhhhhccccC
Confidence 33445677778888774 455566777777776 7774432 344555777777776644333
No 282
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.92 E-value=0.00098 Score=42.66 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q psy8139 276 RHQCAVKIQSLWKMYRVRKKFA 297 (1101)
Q Consensus 276 ~~~aa~~iQs~~r~~~~r~~~~ 297 (1101)
++.+|+.||+.||||+.|++|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999983
No 283
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=96.91 E-value=0.0064 Score=55.35 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=55.2
Q ss_pred CCEEEEEEEEeecC------CCeeEEEECCe---e-----cCC----------CCceEEEe-ecceEEEEEccCCCCCCe
Q psy8139 563 GEIIKLKVSMAGMP------PPTARWLHNGE---P-----LTS----------GGRYEITH-TDRYLNLRISDARRADRG 617 (1101)
Q Consensus 563 g~~~~l~c~~~g~p------~~~v~W~~~g~---~-----l~~----------~~~~~~~~-~~~~~sl~i~~l~~~~~y 617 (1101)
|+.++|.|.....| ...|.|++... + +.. ..++.+.. ..+..+|.|.+++..|+|
T Consensus 2 G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~DsG 81 (106)
T cd05877 2 GGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDYG 81 (106)
T ss_pred CCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHCE
Confidence 78899999887653 45799997431 0 000 12233221 123568999999999999
Q ss_pred EEEEEEEeCCCCceeEEEEEEec
Q psy8139 618 EYQAHGVNSLGEDVASFLVTVTD 640 (1101)
Q Consensus 618 ~y~c~A~N~~G~~~~s~~l~v~~ 640 (1101)
.|.|.+.+..|.......|.|.+
T Consensus 82 ~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 82 RYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEecccceEEEEEEEEEE
Confidence 99999999888888888887764
No 284
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=96.91 E-value=0.007 Score=54.29 Aligned_cols=74 Identities=24% Similarity=0.334 Sum_probs=48.0
Q ss_pred eEEEEEEEeccC---CCeEEEEECCE-----Eee-----------c--CCcEEEEe--cCCeeEEEEeecCCCCCEEEEE
Q psy8139 469 KVEFTVQVEGIP---TPKVSWYKDGF-----EIF-----------S--SRRQRIVT--DNDISTLIIHQAALMDEGEIKC 525 (1101)
Q Consensus 469 ~v~L~C~~~g~p---~~~v~W~~~g~-----~~~-----------~--~~~~~~~~--~~~~~~l~I~~l~~~d~g~Y~C 525 (1101)
+++|.|.....+ ...|.|++... .+. . .++..+.. ..+..+|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 578899876443 33788988321 111 0 02334432 2345689999999999999999
Q ss_pred EEEe-CCCceEEEEEEee
Q psy8139 526 TATN-RAGHSITKARLRL 542 (1101)
Q Consensus 526 ~a~n-~~g~~~~s~~l~V 542 (1101)
.+.+ ..|.....+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9998 5565555556655
No 285
>KOG4152|consensus
Probab=96.89 E-value=0.18 Score=55.91 Aligned_cols=75 Identities=17% Similarity=0.314 Sum_probs=51.5
Q ss_pred EEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe----cCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEE
Q psy8139 605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT----DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY 680 (1101)
Q Consensus 605 sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~----~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~ 680 (1101)
...-..|-++..|.|++.|.|..|.+..+..+... +.|..|+..... .+-..+.++|++|..+|...|..|....
T Consensus 648 ~~~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~-k~~eGi~l~weppt~p~sg~Iieys~yl 726 (830)
T KOG4152|consen 648 KPVKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIK-KTIEGISLVWEPPTKPGSGTIIEYSPYL 726 (830)
T ss_pred cccccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCccccccc-ccccceeecccCCCCCCCcceEEeehhh
Confidence 33445677889999999999999988776555443 334555444332 3345789999999888776777666543
No 286
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=96.87 E-value=0.0074 Score=54.92 Aligned_cols=78 Identities=21% Similarity=0.376 Sum_probs=55.1
Q ss_pred CCEEEEEEEEeecC------CCeeEEEECC---e---ec--CCCCc------e--EEE---eecceEEEEEccCCCCCCe
Q psy8139 563 GEIIKLKVSMAGMP------PPTARWLHNG---E---PL--TSGGR------Y--EIT---HTDRYLNLRISDARRADRG 617 (1101)
Q Consensus 563 g~~~~l~c~~~g~p------~~~v~W~~~g---~---~l--~~~~~------~--~~~---~~~~~~sl~i~~l~~~~~y 617 (1101)
|+.++|.|.....+ .+.|.|.+.. . .+ ..+.. + .+. ......+|.|.+++..|+|
T Consensus 2 G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~G 81 (106)
T cd05714 2 GGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDSG 81 (106)
T ss_pred CCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHCE
Confidence 78899999987653 5799999852 1 01 01111 1 111 1235678999999999999
Q ss_pred EEEEEEEeCCCCceeEEEEEEec
Q psy8139 618 EYQAHGVNSLGEDVASFLVTVTD 640 (1101)
Q Consensus 618 ~y~c~A~N~~G~~~~s~~l~v~~ 640 (1101)
.|.|.+.|..+.......|.|.+
T Consensus 82 ~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 82 RYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEcCCCceEEEEEEEEEE
Confidence 99999999877777788887764
No 287
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.85 E-value=0.0048 Score=56.58 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=51.0
Q ss_pred CeEEeeCCEEEEEEEEeecCCCeeEEEECCe--ecC----------------CCCceEEEeec-ceEEEEEccCCCCCCe
Q psy8139 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGE--PLT----------------SGGRYEITHTD-RYLNLRISDARRADRG 617 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~--~l~----------------~~~~~~~~~~~-~~~sl~i~~l~~~~~y 617 (1101)
.+.+.+|++++|.|...+ +...+.|++... ... ...++...... ...+|.|.+++++|+|
T Consensus 7 ~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg 85 (110)
T cd05899 7 YLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA 85 (110)
T ss_pred ceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence 457889999999999988 778999997421 110 01334433322 4578999999999999
Q ss_pred EEEEEEEeCC
Q psy8139 618 EYQAHGVNSL 627 (1101)
Q Consensus 618 ~y~c~A~N~~ 627 (1101)
.|.|.+.+..
T Consensus 86 ~Y~Ca~~~~~ 95 (110)
T cd05899 86 VYLCASSLGG 95 (110)
T ss_pred EEEEEeeCCC
Confidence 9999998754
No 288
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.85 E-value=0.0045 Score=56.23 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=51.0
Q ss_pred EEeeCCEEEEEEEEeec-CCCeeEEEECCee-----c------------CCCCceEEEeec--ceEEEEEccCCCCCCeE
Q psy8139 559 LFEMGEIIKLKVSMAGM-PPPTARWLHNGEP-----L------------TSGGRYEITHTD--RYLNLRISDARRADRGE 618 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~-p~~~v~W~~~g~~-----l------------~~~~~~~~~~~~--~~~sl~i~~l~~~~~y~ 618 (1101)
.+..|++++|.|...+. +...+.|++.... + ....++.+.... ...+|+|.+++..|.|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46679999999999986 6789999974321 0 011233333332 46789999999999999
Q ss_pred EEEEEEeCCC
Q psy8139 619 YQAHGVNSLG 628 (1101)
Q Consensus 619 y~c~A~N~~G 628 (1101)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987664
No 289
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=96.82 E-value=0.0091 Score=54.20 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=50.6
Q ss_pred CCeEEEEEEEeccC-------CCeEEEEECC-----EEe------------e--cCCcEEEEec---CCeeEEEEeecCC
Q psy8139 467 DEKVEFTVQVEGIP-------TPKVSWYKDG-----FEI------------F--SSRRQRIVTD---NDISTLIIHQAAL 517 (1101)
Q Consensus 467 g~~v~L~C~~~g~p-------~~~v~W~~~g-----~~~------------~--~~~~~~~~~~---~~~~~l~I~~l~~ 517 (1101)
|++++|.|...-.| .+.|.|.+.. ... . ..++..+... .+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67788888854322 3578888741 111 0 0123333321 2467999999999
Q ss_pred CCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139 518 MDEGEIKCTATNRAGHSITKARLRLE 543 (1101)
Q Consensus 518 ~d~g~Y~C~a~n~~g~~~~s~~l~V~ 543 (1101)
+|+|.|.|.+............|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999866666666667664
No 290
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=96.81 E-value=0.0079 Score=54.05 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=30.8
Q ss_pred ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEE
Q psy8139 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638 (1101)
Q Consensus 602 ~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v 638 (1101)
+..+|.|.+++..|+|.|+|.+.|..+..+....|.|
T Consensus 63 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 63 GSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred CcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 4578999999999999999999998777666666655
No 291
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.79 E-value=0.0091 Score=50.42 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=51.3
Q ss_pred eEEccCCeEEEEEEEeccCCC--eEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEE
Q psy8139 462 TTALEDEKVEFTVQVEGIPTP--KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR 539 (1101)
Q Consensus 462 ~~v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~ 539 (1101)
..+..|++++|+|..+..+.| .|+|...+..... ....+..+|.+..+...|+|..+|.+....-.......
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~ 82 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD 82 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence 357889999999999765555 8999875543221 11223448999999999999999999755333333333
Q ss_pred Eee
Q psy8139 540 LRL 542 (1101)
Q Consensus 540 l~V 542 (1101)
+.|
T Consensus 83 V~V 85 (88)
T cd07694 83 IKV 85 (88)
T ss_pred EEE
Confidence 433
No 292
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=96.78 E-value=0.016 Score=52.84 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=32.9
Q ss_pred CeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543 (1101)
Q Consensus 506 ~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~ 543 (1101)
+..+|.|.+++..|+|.|.|.+.+..........|.|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 45799999999999999999999988777777777765
No 293
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.74 E-value=0.0071 Score=56.09 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=52.9
Q ss_pred ecCceeEEccCCeEEEEEEEecc-CCCeEEEEEC--CEE---ee---------cCCcEEEEe--cCCeeEEEEeecCCCC
Q psy8139 457 RALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKD--GFE---IF---------SSRRQRIVT--DNDISTLIIHQAALMD 519 (1101)
Q Consensus 457 ~~p~~~~v~~g~~v~L~C~~~g~-p~~~v~W~~~--g~~---~~---------~~~~~~~~~--~~~~~~l~I~~l~~~d 519 (1101)
..|..+.+..|++++|.|..... ....+.|++. +.. +. ...++.+.. ..+..+|+|.++...|
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 44667789999999999998754 4567999983 111 10 123455442 3456789999999999
Q ss_pred CEEEEEEEEeC
Q psy8139 520 EGEIKCTATNR 530 (1101)
Q Consensus 520 ~g~Y~C~a~n~ 530 (1101)
+|.|.|.+...
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999998753
No 294
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=96.67 E-value=0.015 Score=56.65 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=59.5
Q ss_pred eeEEccCCeEEEEEEEe-ccCCCeEEEEECCEEee----------c--CCcEE-EEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139 461 DTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIF----------S--SRRQR-IVTDNDISTLIIHQAALMDEGEIKCT 526 (1101)
Q Consensus 461 ~~~v~~g~~v~L~C~~~-g~p~~~v~W~~~g~~~~----------~--~~~~~-~~~~~~~~~l~I~~l~~~d~g~Y~C~ 526 (1101)
.+.|.+|++++|.|... +...+.++|++....+. . .++.. ...+-..+.++|.++...|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 45788999999999974 55677899999633221 1 12333 22233456899999999999999998
Q ss_pred EEeC-CC-ceEEEEEEeeccCC
Q psy8139 527 ATNR-AG-HSITKARLRLEAPP 546 (1101)
Q Consensus 527 a~n~-~g-~~~~s~~l~V~~~p 546 (1101)
...- .| .....+-|.|..+.
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEecCCCCCceeEEEEEEEchh
Confidence 7653 34 45556677776543
No 295
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=96.65 E-value=0.015 Score=53.54 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=50.3
Q ss_pred CeEEeeCCEEEEEEEEeecC----CCeeEEEE---------------CCeecC-CC----CceEEEe--ecceEEEEEcc
Q psy8139 557 GLLFEMGEIIKLKVSMAGMP----PPTARWLH---------------NGEPLT-SG----GRYEITH--TDRYLNLRISD 610 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p----~~~v~W~~---------------~g~~l~-~~----~~~~~~~--~~~~~sl~i~~ 610 (1101)
.+.+..|+.+.|.|...... ...+.|.. +|.... .. ++..+.. ..+..++.|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 34677899999999987642 45899943 222211 00 1222221 23467899999
Q ss_pred CCCCCCeEEEEEEEeCCCCc
Q psy8139 611 ARRADRGEYQAHGVNSLGED 630 (1101)
Q Consensus 611 l~~~~~y~y~c~A~N~~G~~ 630 (1101)
++.+|.|.|+|.+.|..+..
T Consensus 87 v~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred CCcccCEEEEEEEEcCCCcC
Confidence 99999999999999987643
No 296
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.64 E-value=0.0077 Score=54.77 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=50.3
Q ss_pred CeEEeeCCEEEEEEEEeecC-CCeeEEEECC--ee---cC---------CCCceEEEeecceEEEEEccCCCCCCeEEEE
Q psy8139 557 GLLFEMGEIIKLKVSMAGMP-PPTARWLHNG--EP---LT---------SGGRYEITHTDRYLNLRISDARRADRGEYQA 621 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p-~~~v~W~~~g--~~---l~---------~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c 621 (1101)
.+.+.+|++++|.|.+.+.. ...+.|++.. .. +. ...++..........|.|.++++.|+|.|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C 88 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC 88 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence 44788899999999987665 6789998632 11 00 1124444444456789999999999999999
Q ss_pred EEEeC
Q psy8139 622 HGVNS 626 (1101)
Q Consensus 622 ~A~N~ 626 (1101)
.+.+.
T Consensus 89 a~~~~ 93 (106)
T cd04980 89 QQYGT 93 (106)
T ss_pred EEeCC
Confidence 98754
No 297
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.61 E-value=0.007 Score=53.50 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=46.2
Q ss_pred EEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEE
Q psy8139 559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~ 624 (1101)
.+..|++++|.|.... +...+.|+++|...................+.|..+++.++|.|+|...
T Consensus 11 vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 11 VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 5778999999997765 5568999998865332100001112235578999999999999999975
No 298
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=96.61 E-value=0.018 Score=51.22 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=31.0
Q ss_pred CeeEEEEeecCCCCCEEEEEEEEe-CCCceEEEEEEee
Q psy8139 506 DISTLIIHQAALMDEGEIKCTATN-RAGHSITKARLRL 542 (1101)
Q Consensus 506 ~~~~l~I~~l~~~d~g~Y~C~a~n-~~g~~~~s~~l~V 542 (1101)
+..+|+|.+++..|+|.|.|.+.| ..|..+....|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 346899999999999999999999 6776666677766
No 299
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=96.61 E-value=0.014 Score=53.36 Aligned_cols=78 Identities=21% Similarity=0.352 Sum_probs=54.9
Q ss_pred CCEEEEEEEEeecC----------CCeeEEEEC--CeecC--------------CCCceEEE---eecceEEEEEccCCC
Q psy8139 563 GEIIKLKVSMAGMP----------PPTARWLHN--GEPLT--------------SGGRYEIT---HTDRYLNLRISDARR 613 (1101)
Q Consensus 563 g~~~~l~c~~~g~p----------~~~v~W~~~--g~~l~--------------~~~~~~~~---~~~~~~sl~i~~l~~ 613 (1101)
|++++|.|.....+ ...+.|++. +.... ..++..+. ...+..+|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 77889999887644 367999874 21110 01233332 123467899999999
Q ss_pred CCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139 614 ADRGEYQAHGVNSLGEDVASFLVTVTD 640 (1101)
Q Consensus 614 ~~~y~y~c~A~N~~G~~~~s~~l~v~~ 640 (1101)
.|+|.|.|.+....+.......|.|.+
T Consensus 82 sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999998777778888888764
No 300
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=96.60 E-value=0.0095 Score=53.61 Aligned_cols=68 Identities=19% Similarity=0.152 Sum_probs=48.3
Q ss_pred EEeeCCEEEEEEEEeecCCCeeEEEECCeecC--------C-----------CCceEEEeecceEEEEEccCCCCCCeEE
Q psy8139 559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT--------S-----------GGRYEITHTDRYLNLRISDARRADRGEY 619 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~--------~-----------~~~~~~~~~~~~~sl~i~~l~~~~~y~y 619 (1101)
.+..|+.+.|.|.....+...+.|++...... . .++..+. .+++|.|.+++..|+|.|
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~---~ngSL~I~~v~~~D~G~Y 85 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY---PNGSLLIQNVTQKDTGFY 85 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe---CCCcEEEecCCcccCEEE
Confidence 46679999999976655556999998532110 0 1122222 256899999999999999
Q ss_pred EEEEEeCCCC
Q psy8139 620 QAHGVNSLGE 629 (1101)
Q Consensus 620 ~c~A~N~~G~ 629 (1101)
+|.+.|..+.
T Consensus 86 ~~~v~~~~~~ 95 (105)
T cd05774 86 TLQTITTNFQ 95 (105)
T ss_pred EEEEEeCCcc
Confidence 9999988743
No 301
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.57 E-value=3.4 Score=56.74 Aligned_cols=197 Identities=16% Similarity=0.136 Sum_probs=104.1
Q ss_pred cEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeec-----------CceeEEccCCeEEEEEEEeccCCCeEEE
Q psy8139 418 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA-----------LHDTTALEDEKVEFTVQVEGIPTPKVSW 486 (1101)
Q Consensus 418 ~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~-----------p~~~~v~~g~~v~L~C~~~g~p~~~v~W 486 (1101)
.|..++.|.|..|....+ +++.+..... .-.+... +....+..+..+.|.-.........+.|
T Consensus 1569 tYtVtLTvtN~~Gs~~~T-----~~i~V~~~I~-GlqI~~~~~~gg~~~~~~~~~~~~~t~~~v~l~~~~~~GTnvsysW 1642 (2740)
T TIGR00864 1569 TFNIIVTAENDVGAAQAS-----IFLFVLQEIE-GLQILGETAEGGGGGVQELDGCYFETNHTVQFHAGFKDGTNLSFSW 1642 (2740)
T ss_pred eEEEEEEEecCCCcccee-----EEEEEeeccc-ceEEEeecccccCCcccccccceeccCCEEEeeeccCCCCeeEEEE
Confidence 677788899998875432 3444332111 1111111 1112344555666665544444456778
Q ss_pred EECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEE--EEEEEEeCCCceEEEEEEeeccCCc-cccCCCCCCCeEEeeC
Q psy8139 487 YKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGE--IKCTATNRAGHSITKARLRLEAPPT-IRLPKQYEDGLLFEMG 563 (1101)
Q Consensus 487 ~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~--Y~C~a~n~~g~~~~s~~l~V~~~p~-~~~~~~~~~~~~v~~g 563 (1101)
...+....... .....+. ...+ ...+.|. ++..|.|..|....+..+.|..|-. +..... ...+..|
T Consensus 1643 ~~~~~n~~dg~--~~~~tGk--~~~v---t~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS---~~~aavn 1712 (2740)
T TIGR00864 1643 NAILDNEPDGP--AFAGSGK--GAKL---NPLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQAS---DNPAAVN 1712 (2740)
T ss_pred EEecCCCCCCc--cccccCc--eeEE---ecCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEecc---CCcccCC
Confidence 65111000000 0011111 1222 2234454 5667889999988887777765321 111111 1144568
Q ss_pred CEEEEEEEEeecCCCeeEEEECCeecC--CCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecC
Q psy8139 564 EIIKLKVSMAGMPPPTARWLHNGEPLT--SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641 (1101)
Q Consensus 564 ~~~~l~c~~~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~ 641 (1101)
.++++.....+.+...+.|...+..-. ....+ +.+ ......|..++.|.|..|+...+..+.|..+
T Consensus 1713 ~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~---------tHt---f~~~G~y~VtVta~N~vss~~~s~~V~Vqep 1780 (2740)
T TIGR00864 1713 ALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM---------SHS---FPSAGLHLVTMKAFNELGSANASEEVDVQEP 1780 (2740)
T ss_pred CeEEEEEEecCCCCcEEEEEECCCCCcccCCCce---------EEE---ccCCceEEEEEEEEccccccceeEEEEEEec
Confidence 888888877788888999997653211 11111 111 2222356677788999998887877777754
Q ss_pred C
Q psy8139 642 P 642 (1101)
Q Consensus 642 P 642 (1101)
.
T Consensus 1781 V 1781 (2740)
T TIGR00864 1781 I 1781 (2740)
T ss_pred c
Confidence 3
No 302
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.56 E-value=0.0023 Score=40.92 Aligned_cols=18 Identities=44% Similarity=0.774 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8139 13 AKTILIQTLWRSKLAMRR 30 (1101)
Q Consensus 13 ~aa~~iQ~~~Rg~~~r~~ 30 (1101)
++|+.||+.|||++.|++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~ 21 (26)
T smart00015 4 RAAIIIQAAWRGYLARKR 21 (26)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444444444444444443
No 303
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=96.56 E-value=0.016 Score=51.71 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=48.4
Q ss_pred EEEEEEEEeecC---CCeeEEEECCee----c-----------CC--CCceEEEeec-ceEEEEEccCCCCCCeEEEEEE
Q psy8139 565 IIKLKVSMAGMP---PPTARWLHNGEP----L-----------TS--GGRYEITHTD-RYLNLRISDARRADRGEYQAHG 623 (1101)
Q Consensus 565 ~~~l~c~~~g~p---~~~v~W~~~g~~----l-----------~~--~~~~~~~~~~-~~~sl~i~~l~~~~~y~y~c~A 623 (1101)
+++|.|.....+ ...|.|++.... + .. ..+..+.... ...+|.|.+++..|+|.|.|.+
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v 81 (98)
T cd05718 2 SVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICEF 81 (98)
T ss_pred CEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEEE
Confidence 578999887654 447999984321 0 01 1111221111 4678999999999999999998
Q ss_pred Ee-CCCCceeEEEEEE
Q psy8139 624 VN-SLGEDVASFLVTV 638 (1101)
Q Consensus 624 ~N-~~G~~~~s~~l~v 638 (1101)
.+ ..|.......|.|
T Consensus 82 ~~~~~g~~~~~~~l~V 97 (98)
T cd05718 82 ATFPQGNRQKVTTLTV 97 (98)
T ss_pred EeCCCCcEEEEEEEEe
Confidence 75 5666666666655
No 304
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=96.54 E-value=0.019 Score=53.00 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=49.0
Q ss_pred CeEEeeCCEEEEEEEEeecC----CCeeEEEEC----Cee--c---C------CCCce----EEE--eecceEEEEEccC
Q psy8139 557 GLLFEMGEIIKLKVSMAGMP----PPTARWLHN----GEP--L---T------SGGRY----EIT--HTDRYLNLRISDA 611 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p----~~~v~W~~~----g~~--l---~------~~~~~----~~~--~~~~~~sl~i~~l 611 (1101)
.+.+..|++++|.|.....+ ...+.|++. +.+ + . ...++ .+. ...+..+|.|.++
T Consensus 7 ~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v 86 (115)
T cd05880 7 EVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQL 86 (115)
T ss_pred eEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeC
Confidence 45788899999999987543 246999741 111 1 0 01122 111 1234678999999
Q ss_pred CCCCCeEEEEEEEeCCCC
Q psy8139 612 RRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 612 ~~~~~y~y~c~A~N~~G~ 629 (1101)
++.|+|.|.|.+.|..+.
T Consensus 87 ~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 87 QPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred ChhhCEEEEEEEEeCCCC
Confidence 999999999999987764
No 305
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.51 E-value=0.013 Score=54.42 Aligned_cols=69 Identities=14% Similarity=0.328 Sum_probs=51.2
Q ss_pred CeEEeeCCEEEEEEEEee--cCCCeeEEEEC--Ceec------C-----------CCCceEEEeec--ceEEEEEccCCC
Q psy8139 557 GLLFEMGEIIKLKVSMAG--MPPPTARWLHN--GEPL------T-----------SGGRYEITHTD--RYLNLRISDARR 613 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g--~p~~~v~W~~~--g~~l------~-----------~~~~~~~~~~~--~~~sl~i~~l~~ 613 (1101)
.+.+..|++++|.|...+ .+.+.+.|++. +... . ...++.+.... ....|+|.++++
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 446778999999999987 67889999973 2111 0 12345554444 467899999999
Q ss_pred CCCeEEEEEEEe
Q psy8139 614 ADRGEYQAHGVN 625 (1101)
Q Consensus 614 ~~~y~y~c~A~N 625 (1101)
.|+|.|.|.+..
T Consensus 87 ~Dsg~Y~C~~~~ 98 (116)
T cd04982 87 EDSATYYCAYWE 98 (116)
T ss_pred HHCEEEEEEEec
Confidence 999999999864
No 306
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.49 E-value=3.1 Score=57.21 Aligned_cols=191 Identities=15% Similarity=0.090 Sum_probs=110.5
Q ss_pred ccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeec-Ccee-EEccCCeEEEEEEEeccCCCeEEEEECCEEee
Q psy8139 417 WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA-LHDT-TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF 494 (1101)
Q Consensus 417 d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~-p~~~-~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~ 494 (1101)
..|..++.|.|..|.... .+.+.|.... ....|... +... .+..|..+.|.-.+.......+.|..++....
T Consensus 1754 G~y~VtVta~N~vss~~~-----s~~V~VqepV-~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~ 1827 (2740)
T TIGR00864 1754 GLHLVTMKAFNELGSANA-----SEEVDVQEPI-SGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSK 1827 (2740)
T ss_pred ceEEEEEEEEccccccce-----eEEEEEEecc-ccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCcc
Confidence 367788889998875432 2444443222 22223211 1111 34456667666654333334677876543211
Q ss_pred cCCcEEEEecCCeeEEEEeecCCCCCEEEE--EEEEeCCCceEEEEEEeeccCCcc-ccCCCCCCCeEEeeCCEEEEEEE
Q psy8139 495 SSRRQRIVTDNDISTLIIHQAALMDEGEIK--CTATNRAGHSITKARLRLEAPPTI-RLPKQYEDGLLFEMGEIIKLKVS 571 (1101)
Q Consensus 495 ~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~--C~a~n~~g~~~~s~~l~V~~~p~~-~~~~~~~~~~~v~~g~~~~l~c~ 571 (1101)
. +. .. ..+..+.|.|+ ..|.|..+....+..+.|+.+..- ..... ...+..|+.+++.+.
T Consensus 1828 ~---------gk--~v---~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as---~~~~~~n~~v~fsa~ 1890 (2740)
T TIGR00864 1828 M---------GK--HA---CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKAS---KKIAAIGEKVEFQIL 1890 (2740)
T ss_pred c---------cc--ee---EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecc---cccccCCCEEEEEEE
Confidence 1 11 11 13455677775 468899888888888888876532 22211 125567999999999
Q ss_pred EeecCCCeeEEEECCee-cCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139 572 MAGMPPPTARWLHNGEP-LTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640 (1101)
Q Consensus 572 ~~g~p~~~v~W~~~g~~-l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~ 640 (1101)
....+...+.|...+.. ... ..+ .. ..+.-..-..|.+++.|.|..+.......+.|..
T Consensus 1891 l~~GS~Vtf~w~fGdgs~~~~-------t~~--~t-~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle 1950 (2740)
T TIGR00864 1891 LAAGSAVNFRLQIGGAAPEVL-------QPG--PR-FSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLE 1950 (2740)
T ss_pred ecCCCceEEEEEeCCCCceee-------cCC--Ce-EEeecCCCCcEEEEEEEEeccceeeeeEEEEEEE
Confidence 88888889999875422 111 001 11 1122233457889999999999987777776653
No 307
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=96.48 E-value=0.02 Score=50.43 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=48.5
Q ss_pred eEEEEEEEeccC-CCeEEEEECC----EEee-------------cCCcEEEE-ecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139 469 KVEFTVQVEGIP-TPKVSWYKDG----FEIF-------------SSRRQRIV-TDNDISTLIIHQAALMDEGEIKCTATN 529 (1101)
Q Consensus 469 ~v~L~C~~~g~p-~~~v~W~~~g----~~~~-------------~~~~~~~~-~~~~~~~l~I~~l~~~d~g~Y~C~a~n 529 (1101)
+++|.|.....+ ...|+|.+.. ..+. ..++..+. ......+|.|.++...|+|.|.|.+.+
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 578899876433 2368998742 1111 01233332 123356999999999999999999765
Q ss_pred -CCCceEEEEEEee
Q psy8139 530 -RAGHSITKARLRL 542 (1101)
Q Consensus 530 -~~g~~~~s~~l~V 542 (1101)
..|...++..|.|
T Consensus 82 fP~G~~~~~~~l~~ 95 (96)
T cd05887 82 FPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCCeeEEEEEEE
Confidence 5677777777766
No 308
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=96.46 E-value=0.025 Score=48.64 Aligned_cols=63 Identities=19% Similarity=0.367 Sum_probs=41.7
Q ss_pred EEEEEEEecc-CCCeEEEEECCEEeecCCcEEEEecCCe------eEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139 470 VEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDI------STLIIHQAALMDEGEIKCTATNRAGH 533 (1101)
Q Consensus 470 v~L~C~~~g~-p~~~v~W~~~g~~~~~~~~~~~~~~~~~------~~l~I~~l~~~d~g~Y~C~a~n~~g~ 533 (1101)
++|.|.+.|. |.+.|+|+++|..+..... .....+.. +.|.+......+...|+|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 5799999774 8889999999988765432 23223221 23334334455668999999987643
No 309
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=96.44 E-value=1.7 Score=46.64 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=47.5
Q ss_pred eEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEE-Ee------cCCCCCCccEEEEec--C--CeEEEEeecCCCCCCc
Q psy8139 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT-VT------DRPLPPGKAKVVMTL--G--KSVTLSWSEPEDDGGC 671 (1101)
Q Consensus 603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~-v~------~~P~~P~~~~~~~~~--~--~sv~lsW~~p~~~~g~ 671 (1101)
-..+.+.++.++..|..++.+.|.... .....+. +. .-|.-|.++.+.... - ++++|.|.+..+..
T Consensus 127 ~~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~-- 203 (300)
T PF10179_consen 127 LRHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDRS-- 203 (300)
T ss_pred eEEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCCC--
Confidence 457889999999999999987775443 2333333 22 235667777765444 2 79999999643321
Q ss_pred ccceeEEEEEcC
Q psy8139 672 KIGNYIVEYFRP 683 (1101)
Q Consensus 672 ~i~~Y~v~~~~~ 683 (1101)
..|=|....+
T Consensus 204 --~kYCvy~~~~ 213 (300)
T PF10179_consen 204 --IKYCVYRREE 213 (300)
T ss_pred --ceEEEEEEEe
Confidence 3455554433
No 310
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=96.44 E-value=0.013 Score=52.30 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=48.0
Q ss_pred CCeEEEEEEEeccCCC-eEEEEECCE----Eee---c----------CCcEEEE-ecCCeeEEEEeecCCCCCEEEEEEE
Q psy8139 467 DEKVEFTVQVEGIPTP-KVSWYKDGF----EIF---S----------SRRQRIV-TDNDISTLIIHQAALMDEGEIKCTA 527 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~-~v~W~~~g~----~~~---~----------~~~~~~~-~~~~~~~l~I~~l~~~d~g~Y~C~a 527 (1101)
|++++|.|........ .+.|++... .+. . ..+..+. ...+..+|+|.+++.+|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 6789999986544332 589998421 111 0 0111221 1234568999999999999999997
Q ss_pred Ee-CCCceEEEEEEee
Q psy8139 528 TN-RAGHSITKARLRL 542 (1101)
Q Consensus 528 ~n-~~g~~~~s~~l~V 542 (1101)
.+ ..|.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 75 4555555556655
No 311
>KOG4802|consensus
Probab=96.43 E-value=0.032 Score=59.92 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=72.7
Q ss_pred eEEEEEccCCCCCCeEEEEEEEeCCCCc---eeEEEEEEec---CCCCCCccEEEEecCCeEEEEeecCCCCCCccccee
Q psy8139 603 YLNLRISDARRADRGEYQAHGVNSLGED---VASFLVTVTD---RPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNY 676 (1101)
Q Consensus 603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~---~~s~~l~v~~---~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y 676 (1101)
.....++++.|+.-|.|++.|.|..|.. +++..+.... +|.+|.++.+..+..+.
T Consensus 208 e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG------------------- 268 (516)
T KOG4802|consen 208 ENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDG------------------- 268 (516)
T ss_pred CceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecc-------------------
Confidence 3467888999999999999999988753 3333333332 34555666655432221
Q ss_pred EEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCC---CceeecccccCccEEEEcCCC
Q psy8139 677 IVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP---YWVRASPHMVEDTELMVSGLE 753 (1101)
Q Consensus 677 ~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~ 753 (1101)
.-...|.|.|+.. +-||..|.|.|...-.. ....-....-++..+.|++|.
T Consensus 269 ------------------------~~~~~v~w~P~~s--dlPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~ 322 (516)
T KOG4802|consen 269 ------------------------RYMLKVVWCPSKS--DLPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELL 322 (516)
T ss_pred ------------------------eEEEEEEeCCCCC--CCcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcC
Confidence 0012344444322 23556666665432210 000000000112233499999
Q ss_pred CCceEEEEEEEEcCCccCCCC
Q psy8139 754 PGWRYQFRITAENVVGFSEPG 774 (1101)
Q Consensus 754 p~t~Y~~~V~A~n~~G~g~~S 774 (1101)
|+..|.+.|.|....|.+.--
T Consensus 323 Pns~Y~VevqAi~y~g~~rLk 343 (516)
T KOG4802|consen 323 PNSSYYVEVQAISYLGSRRLK 343 (516)
T ss_pred CCCeEEEEEEEEEeccCcccc
Confidence 999999999999999987653
No 312
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.41 E-value=0.016 Score=52.80 Aligned_cols=67 Identities=18% Similarity=0.325 Sum_probs=46.1
Q ss_pred EEccCCeEEEEEEEecc-CCCeEEEEECCEE--------e---e-----------cCCcEEEE--ecCCeeEEEEeecCC
Q psy8139 463 TALEDEKVEFTVQVEGI-PTPKVSWYKDGFE--------I---F-----------SSRRQRIV--TDNDISTLIIHQAAL 517 (1101)
Q Consensus 463 ~v~~g~~v~L~C~~~g~-p~~~v~W~~~g~~--------~---~-----------~~~~~~~~--~~~~~~~l~I~~l~~ 517 (1101)
.+..|++++|.|...+. ....+.|++.... + . ...++.+. .......|+|.++.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 47789999999998764 3457999983210 0 0 01234332 223456799999999
Q ss_pred CCCEEEEEEEEe
Q psy8139 518 MDEGEIKCTATN 529 (1101)
Q Consensus 518 ~d~g~Y~C~a~n 529 (1101)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999753
No 313
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.38 E-value=0.013 Score=52.36 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=49.1
Q ss_pred EEeeCCEEEEEEEEeec--CCCeeEEEECC---eec-----------CCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139 559 LFEMGEIIKLKVSMAGM--PPPTARWLHNG---EPL-----------TSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~--p~~~v~W~~~g---~~l-----------~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~ 622 (1101)
.+..|++++|.|...+. ....+.|++.. .+. ....++.........+|+|.++++.|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 45679999999998765 56679998621 111 012355555555677899999999999999999
Q ss_pred EEeC
Q psy8139 623 GVNS 626 (1101)
Q Consensus 623 A~N~ 626 (1101)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8653
No 314
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.38 E-value=0.018 Score=53.62 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=50.1
Q ss_pred cCceeEEccCCeEEEEEEEeccC------CCeEEEEECCE------Eee--c---------CCcEEEE--ecCCeeEEEE
Q psy8139 458 ALHDTTALEDEKVEFTVQVEGIP------TPKVSWYKDGF------EIF--S---------SRRQRIV--TDNDISTLII 512 (1101)
Q Consensus 458 ~p~~~~v~~g~~v~L~C~~~g~p------~~~v~W~~~g~------~~~--~---------~~~~~~~--~~~~~~~l~I 512 (1101)
.|..+.+..|++++|.|.....+ ...+.|++... .+. . .+++.+. ...+..+|+|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 46677899999999999875332 34689998421 110 0 1244442 1344568999
Q ss_pred eecCCCCCEEEEEEEEeC
Q psy8139 513 HQAALMDEGEIKCTATNR 530 (1101)
Q Consensus 513 ~~l~~~d~g~Y~C~a~n~ 530 (1101)
.+++.+|+|.|.|.....
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999987664
No 315
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=96.35 E-value=0.024 Score=48.66 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=39.6
Q ss_pred EEEEEEEec-cCCCeEEEEECCEEeecCCcEEEEecCC----eeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139 470 VEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRIVTDND----ISTLIIHQAALMDEGEIKCTATNRAGH 533 (1101)
Q Consensus 470 v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~ 533 (1101)
+.|.|.+.+ .|.+.|+|++++..+...........++ .+.|.+......+...|+|.|.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 579999966 4888999999998876432111111121 113333333334567999999987654
No 316
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.28 E-value=0.019 Score=51.30 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=49.3
Q ss_pred eEEccCCeEEEEEEEec-cCCCeEEEEECCE-----Ee--------ecCCcEEEEe--cCCeeEEEEeecCCCCCEEEEE
Q psy8139 462 TTALEDEKVEFTVQVEG-IPTPKVSWYKDGF-----EI--------FSSRRQRIVT--DNDISTLIIHQAALMDEGEIKC 525 (1101)
Q Consensus 462 ~~v~~g~~v~L~C~~~g-~p~~~v~W~~~g~-----~~--------~~~~~~~~~~--~~~~~~l~I~~l~~~d~g~Y~C 525 (1101)
+.+..|++++|.|.... .+...+.|++... .+ ....++.+.. ..+..+|+|.++..+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 35778999999998765 3456789998531 11 1123444432 2456689999999999999999
Q ss_pred EEEeCC
Q psy8139 526 TATNRA 531 (1101)
Q Consensus 526 ~a~n~~ 531 (1101)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 987654
No 317
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=96.23 E-value=0.016 Score=48.91 Aligned_cols=68 Identities=34% Similarity=0.618 Sum_probs=45.4
Q ss_pred CCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCC---ceEEcCccccccceEEEcCccCCccEEEEEEEEecCC
Q psy8139 359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP---YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVG 430 (1101)
Q Consensus 359 ~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~---~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G 430 (1101)
.....++.|+|.+|...++ .+|.+.+...... .|...... .....+.|.+|.+++.|.+++.|.+..|
T Consensus 11 ~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~Y~v~v~a~~~~g 81 (83)
T smart00060 11 DVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVT-PSSTSYTLTGLKPGTEYEFRVRAVNGAG 81 (83)
T ss_pred EEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEec-CCccEEEEeCcCCCCEEEEEEEEEcccC
Confidence 3455699999998743321 5677766543222 24333222 1246899999999999999999998755
No 318
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=96.22 E-value=0.024 Score=50.10 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=46.1
Q ss_pred eEEccCCeEEEEEEEec-cCCCe--EEEEECCEEeecCCcEEE--EecCCeeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139 462 TTALEDEKVEFTVQVEG-IPTPK--VSWYKDGFEIFSSRRQRI--VTDNDISTLIIHQAALMDEGEIKCTATNRAGH 533 (1101)
Q Consensus 462 ~~v~~g~~v~L~C~~~g-~p~~~--v~W~~~g~~~~~~~~~~~--~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~ 533 (1101)
..+.+|..++|.|.+.| .|.+. |.|++++..+........ .......++++.--..+|.-.|+|.|.+..+.
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 34678999999999876 56665 799999988854321110 00112345666544334444899999987643
No 319
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=96.20 E-value=0.019 Score=50.62 Aligned_cols=64 Identities=23% Similarity=0.312 Sum_probs=46.3
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCC------------------CCceEEEeecceEEEEEccCCCCCCeEEEEEEE
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTS------------------GGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~------------------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~ 624 (1101)
|++++|.|.....+...+.|++....... ..+..+. .+.+|.|.++++.|+|.|+|.+.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY---PNGSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc---CCceEEEccCCchhcEEEEEEEE
Confidence 67889999888777779999985433210 1112221 24789999999999999999998
Q ss_pred eCCCC
Q psy8139 625 NSLGE 629 (1101)
Q Consensus 625 N~~G~ 629 (1101)
+..|.
T Consensus 78 ~~~~~ 82 (92)
T cd05741 78 STNGV 82 (92)
T ss_pred cCCCc
Confidence 87654
No 320
>PHA03376 BARF1; Provisional
Probab=96.20 E-value=0.082 Score=51.12 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=47.4
Q ss_pred ccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCCe
Q psy8139 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483 (1101)
Q Consensus 404 ~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~ 483 (1101)
.+.+|.|.++++.|.|.|+|........+... .-+++ ..|-.+...........-+...+.|...|.|.|.
T Consensus 85 gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~---ehLt~------V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~ 155 (221)
T PHA03376 85 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQ---EHLSV------VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPH 155 (221)
T ss_pred CeEEEEEEeeeecCCceEEEEEEcCCCceeee---eeeee------eecceEEEEeccccCCCCCeeEEEEecCCcCCch
Confidence 44679999999999999999998754332211 01111 0111111111111112245678999999999999
Q ss_pred EEEEECC
Q psy8139 484 VSWYKDG 490 (1101)
Q Consensus 484 v~W~~~g 490 (1101)
++|..+.
T Consensus 156 ~~Wle~~ 162 (221)
T PHA03376 156 VQWLMPE 162 (221)
T ss_pred heecccc
Confidence 9998754
No 321
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.20 E-value=0.014 Score=51.75 Aligned_cols=68 Identities=24% Similarity=0.356 Sum_probs=45.4
Q ss_pred ccCCeEEEEEEEecc-CC-CeEEEEECCEEeecCCc-EEEEec-CC----eeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139 465 LEDEKVEFTVQVEGI-PT-PKVSWYKDGFEIFSSRR-QRIVTD-ND----ISTLIIHQAALMDEGEIKCTATNRAG 532 (1101)
Q Consensus 465 ~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~~~~~~~-~~~~~~-~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g 532 (1101)
..|..++|.|.+.|. |. +.++|+++|..+..... ...... ++ .+.|.+......+.+.|+|.|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 468899999999997 53 58999999988765432 111111 11 12344444444489999999998754
No 322
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.15 E-value=0.041 Score=46.63 Aligned_cols=62 Identities=16% Similarity=0.272 Sum_probs=41.7
Q ss_pred EEEEEEEe-ccCCCeEEEEECCEEeecCCcEEEEecC---CeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139 470 VEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDN---DISTLIIHQAALMDEGEIKCTATNRA 531 (1101)
Q Consensus 470 v~L~C~~~-g~p~~~v~W~~~g~~~~~~~~~~~~~~~---~~~~l~I~~l~~~d~g~Y~C~a~n~~ 531 (1101)
+.|.|.+. +.|.+.|+|++++..+...........+ ..++|.|..-...|...|+|.|.|..
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 57899875 4688899999999988654221111112 23466665555556668999999865
No 323
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=96.06 E-value=0.02 Score=50.98 Aligned_cols=69 Identities=19% Similarity=0.338 Sum_probs=48.0
Q ss_pred eCCEEEEEEEEee-cCCCeeEEEECCeecC--C-----------CCce--EEEeecceEEEEEccCCCCCCeEEEEEEEe
Q psy8139 562 MGEIIKLKVSMAG-MPPPTARWLHNGEPLT--S-----------GGRY--EITHTDRYLNLRISDARRADRGEYQAHGVN 625 (1101)
Q Consensus 562 ~g~~~~l~c~~~g-~p~~~v~W~~~g~~l~--~-----------~~~~--~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N 625 (1101)
.|++++|.|.... .....+.|++....+. . .+.+ .+.......+|.|.+++..|+|.|.|.+.+
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 4889999998765 5556899987532211 0 1111 122234468899999999999999999998
Q ss_pred CCCCc
Q psy8139 626 SLGED 630 (1101)
Q Consensus 626 ~~G~~ 630 (1101)
..|..
T Consensus 83 ~~~~~ 87 (97)
T cd05775 83 KNGVT 87 (97)
T ss_pred CCCCe
Confidence 87654
No 324
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.02 E-value=3 Score=45.71 Aligned_cols=230 Identities=15% Similarity=0.161 Sum_probs=111.7
Q ss_pred cceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC--
Q psy8139 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP-- 482 (1101)
Q Consensus 405 ~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~-- 482 (1101)
+-.+.|.++.-.|+|.|++...+....... ...+++.+. -.||.+...+ ..++.|+...-.|.+...=++
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~---e~~~~~~v~---~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~S 277 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLL---DKHIYIRVC---QRPASVDVLA--PPVLSGENYKASCIVRHFYPPGS 277 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccc---cceEEEEEE---ecCCCccccC--CccccCCCceEEEEeeeecCCCc
Confidence 357899999999999887776664433221 122333333 2344443332 247889999999988764333
Q ss_pred -eEEEEECCEEeecCCcEEEE---ecC--C---eeEEEEeecCCCCCEEEEEEEEeCCCceEEE----EEEeeccCCccc
Q psy8139 483 -KVSWYKDGFEIFSSRRQRIV---TDN--D---ISTLIIHQAALMDEGEIKCTATNRAGHSITK----ARLRLEAPPTIR 549 (1101)
Q Consensus 483 -~v~W~~~g~~~~~~~~~~~~---~~~--~---~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s----~~l~V~~~p~~~ 549 (1101)
.++|+.+|..+......... ..+ + .+++++.+......=..+|.+.=..+..... +.-.|..+|.+.
T Consensus 278 vrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~IS 357 (490)
T PHA03271 278 VYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRIS 357 (490)
T ss_pred eEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEE
Confidence 58999999877543211111 111 1 1233333321122226899876443322222 222333334332
Q ss_pred cCCCCCCCeEEeeCCEEEEEEEEeecC-CCeeEEEECCeecCCCCc--eE-EEeecceEEEEEcc-CCCC---CCeEEEE
Q psy8139 550 LPKQYEDGLLFEMGEIIKLKVSMAGMP-PPTARWLHNGEPLTSGGR--YE-ITHTDRYLNLRISD-ARRA---DRGEYQA 621 (1101)
Q Consensus 550 ~~~~~~~~~~v~~g~~~~l~c~~~g~p-~~~v~W~~~g~~l~~~~~--~~-~~~~~~~~sl~i~~-l~~~---~~y~y~c 621 (1101)
+....|.. .|.+.--| ...+.|..++.+...... .. -.-.+..+...|.. +..+ ..-.|+|
T Consensus 358 --------v~FedG~A---VCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTC 426 (490)
T PHA03271 358 --------LAFKDGYA---ICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTC 426 (490)
T ss_pred --------EEEeCCEE---EEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEE
Confidence 23333332 34443222 568999987665432100 00 00011112223333 2222 3467999
Q ss_pred EEEe-CCCCceeEEEEEEecCCCCCCccEEEEe
Q psy8139 622 HGVN-SLGEDVASFLVTVTDRPLPPGKAKVVMT 653 (1101)
Q Consensus 622 ~A~N-~~G~~~~s~~l~v~~~P~~P~~~~~~~~ 653 (1101)
.+.. +.+-......-.....|..+..+.+..+
T Consensus 427 rL~GYP~~lP~Fe~t~tYDASP~a~~~PmVisI 459 (490)
T PHA03271 427 RLIGYPFDEDKFQASEYYDATPSARGSPMVLTI 459 (490)
T ss_pred EEeecCCCCCccceeeeecCCCccCCCcEEEEe
Confidence 8853 2222223333334445655555554433
No 325
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=96.01 E-value=0.038 Score=49.53 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=47.5
Q ss_pred EEEEEEEEeecC---CCeeEEEECCee-----c---C--------C--CCceEEEe--ecceEEEEEccCCCCCCeEEEE
Q psy8139 565 IIKLKVSMAGMP---PPTARWLHNGEP-----L---T--------S--GGRYEITH--TDRYLNLRISDARRADRGEYQA 621 (1101)
Q Consensus 565 ~~~l~c~~~g~p---~~~v~W~~~g~~-----l---~--------~--~~~~~~~~--~~~~~sl~i~~l~~~~~y~y~c 621 (1101)
+++|.|.....+ ...|.|++.... + . . .++..+.. .....+|+|.+++..|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 467888876544 347888873211 0 0 0 02223322 2346789999999999999999
Q ss_pred EEEe-CCCCceeEEEEEE
Q psy8139 622 HGVN-SLGEDVASFLVTV 638 (1101)
Q Consensus 622 ~A~N-~~G~~~~s~~l~v 638 (1101)
.+.| +.|..+....|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9998 6666655666655
No 326
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.00 E-value=0.019 Score=51.83 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=45.9
Q ss_pred EccCCeEEEEEEEeccCCCeEEEEECCEE-------ee---c------------CCcEEEEecCCeeEEEEeecCCCCCE
Q psy8139 464 ALEDEKVEFTVQVEGIPTPKVSWYKDGFE-------IF---S------------SRRQRIVTDNDISTLIIHQAALMDEG 521 (1101)
Q Consensus 464 v~~g~~v~L~C~~~g~p~~~v~W~~~g~~-------~~---~------------~~~~~~~~~~~~~~l~I~~l~~~d~g 521 (1101)
+..|++++|.|.........+.|++.... +. . ..++..........|+|.+++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 56899999999886655567999983311 11 0 11233333345668999999999999
Q ss_pred EEEEEEEe
Q psy8139 522 EIKCTATN 529 (1101)
Q Consensus 522 ~Y~C~a~n 529 (1101)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998753
No 327
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=96.00 E-value=0.049 Score=50.43 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=48.2
Q ss_pred CeEEeeCCEEEEEEEEeecC----CCeeEEEECCe------ec---------C-CCCce----EEEe--ecceEEEEEcc
Q psy8139 557 GLLFEMGEIIKLKVSMAGMP----PPTARWLHNGE------PL---------T-SGGRY----EITH--TDRYLNLRISD 610 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p----~~~v~W~~~g~------~l---------~-~~~~~----~~~~--~~~~~sl~i~~ 610 (1101)
.+.+..|+.++|.|...... ...+.|++... .+ . ..+++ .+.. ..+..+|+|.+
T Consensus 7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 86 (116)
T cd05715 7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHN 86 (116)
T ss_pred eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEee
Confidence 34678899999999886543 25699975211 00 0 01111 1211 22357899999
Q ss_pred CCCCCCeEEEEEEEeCCCC
Q psy8139 611 ARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 611 l~~~~~y~y~c~A~N~~G~ 629 (1101)
+++.|+|.|.|.+.|..+.
T Consensus 87 v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 87 LQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred CCcccCEEEEEEEEeCCCC
Confidence 9999999999999987653
No 328
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=95.96 E-value=0.037 Score=47.51 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=40.4
Q ss_pred EEEEEEEec-cCCCeEEEEECCEEeecCCcEEEEecCC-----eeEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139 470 VEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRIVTDND-----ISTLIIHQAALMDEGEIKCTATNRAG 532 (1101)
Q Consensus 470 v~L~C~~~g-~p~~~v~W~~~g~~~~~~~~~~~~~~~~-----~~~l~I~~l~~~d~g~Y~C~a~n~~g 532 (1101)
++|.|.+.| .|.+.|+|+++|..+............+ .+.|.+..-...+...|+|.+.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 579999876 6778999999999875432222222111 12445544345566789999988653
No 329
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=95.90 E-value=0.031 Score=49.56 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=46.3
Q ss_pred eCCEEEEEEEEeec-C-CCeeEEEECCeecCCCCc-eEEEeec--c---eEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139 562 MGEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGR-YEITHTD--R---YLNLRISDARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 562 ~g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~-~~~~~~~--~---~~sl~i~~l~~~~~y~y~c~A~N~~G~ 629 (1101)
.|..+.|.|.+.|. | .+.++|.++|..+..... ....... . .+.|.+......+.+.|+|.|.+....
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 47789999999997 5 478999999998875432 1111111 1 233455554445899999999887553
No 330
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=95.89 E-value=0.08 Score=47.09 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=31.9
Q ss_pred ceEEEEEccCCCCCCeEEEEEEEe-CCCCceeEEEEEE
Q psy8139 602 RYLNLRISDARRADRGEYQAHGVN-SLGEDVASFLVTV 638 (1101)
Q Consensus 602 ~~~sl~i~~l~~~~~y~y~c~A~N-~~G~~~~s~~l~v 638 (1101)
.+.++.|.+|+..|.|.|+|.+.| +.|..+..+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 457899999999999999999999 6787777777766
No 331
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=95.88 E-value=0.086 Score=45.25 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=43.4
Q ss_pred EEEEEEEeec-CCCeeEEEECCeecCCCCceEEEeecc------eEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139 566 IKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEITHTDR------YLNLRISDARRADRGEYQAHGVNSLGED 630 (1101)
Q Consensus 566 ~~l~c~~~g~-p~~~v~W~~~g~~l~~~~~~~~~~~~~------~~sl~i~~l~~~~~y~y~c~A~N~~G~~ 630 (1101)
+.|.|.+.|. |.+.|+|+++|..+..... .....++ ...+.+......+...|+|.|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 5689999875 8899999999998865432 2222222 1334444455667789999999876543
No 332
>KOG4367|consensus
Probab=95.87 E-value=0.012 Score=62.82 Aligned_cols=73 Identities=23% Similarity=0.322 Sum_probs=60.4
Q ss_pred CCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCC
Q psy8139 360 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG 435 (1101)
Q Consensus 360 ~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s 435 (1101)
..+++++|+|..|..+ +.++.||.++.....++.+..+.. ..++-.+|.+|.-++.|.-+|.|.|..|.+..|
T Consensus 450 t~nns~t~~wkqp~~~-~~~~dg~~leld~g~~g~frevy~--g~etmctvdglhfns~y~arvka~n~tg~s~ys 522 (699)
T KOG4367|consen 450 THNNSATLSWKQPPLS-TVPADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYS 522 (699)
T ss_pred ccCCceEEEeecCCCC-CCCCcceEEEeecCCCCceeEEEe--cCceeEEecceecchhHHHHHHHhhccCCCccc
Confidence 5678999999966444 568999999998876666665533 466789999999999999999999999998776
No 333
>PTZ00014 myosin-A; Provisional
Probab=95.84 E-value=0.02 Score=70.75 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 39 RSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQ 84 (1101)
Q Consensus 39 ~~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~iQ~~~R~~~~r~~ 84 (1101)
...++.||++||||+ +|++|++.+.+++.||+.+|+++.++.
T Consensus 777 ~~~~~~iq~~~r~~~----~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 777 EPLVSVLEALILKIK----KKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999 899999999999999999999988653
No 334
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=95.82 E-value=0.066 Score=45.89 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=41.0
Q ss_pred EEEEEEEeec-CCCeeEEEECCeecCCCCceEEEeecc----eEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139 566 IKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEITHTDR----YLNLRISDARRADRGEYQAHGVNSLGED 630 (1101)
Q Consensus 566 ~~l~c~~~g~-p~~~v~W~~~g~~l~~~~~~~~~~~~~----~~sl~i~~l~~~~~y~y~c~A~N~~G~~ 630 (1101)
+.|.|.+.+. |.+.|+|+++|..+...........++ .+.+.+......+...|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 4689999865 888999999999886432111111111 2234443333445679999999876654
No 335
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.82 E-value=0.036 Score=45.14 Aligned_cols=62 Identities=35% Similarity=0.516 Sum_probs=45.4
Q ss_pred EEEEEEEeccCCCeEEEEECCEEeecCCcE----EEEecCCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ----RIVTDNDISTLIIHQAALMDEGEIKCTATNRA 531 (1101)
Q Consensus 470 v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~----~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~ 531 (1101)
+.|.|.+.+.+.+.+.|++++......... ..........|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 368999988788899999988765433211 11112334589999999999999999998765
No 336
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=95.76 E-value=0.047 Score=46.25 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=43.7
Q ss_pred EEEEEEEee-cCCCeeEEEECCeecCCCCceEEEeec---ceEEEEEccCCCCCCeEEEEEEEeCCC
Q psy8139 566 IKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEITHTD---RYLNLRISDARRADRGEYQAHGVNSLG 628 (1101)
Q Consensus 566 ~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~---~~~sl~i~~l~~~~~y~y~c~A~N~~G 628 (1101)
+.|.|.+.| .|.+.|+|++++.++...........+ ..++|.|..-...|.-.|+|.|.|..-
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l 68 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV 68 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence 568999886 478899999999998754221111111 245677766666777889999998753
No 337
>PHA03270 envelope glycoprotein C; Provisional
Probab=95.67 E-value=3.3 Score=45.74 Aligned_cols=193 Identities=21% Similarity=0.240 Sum_probs=104.5
Q ss_pred eeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEE
Q psy8139 364 VFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443 (1101)
Q Consensus 364 sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv 443 (1101)
...+-|..+..+|..+ .-|.++ .......|+|..|+..++|.|.=...+..+....+ ..+++
T Consensus 155 ~~~~~~a~ga~Pg~~P-~~y~~~--------------g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~---~~VtV 216 (466)
T PHA03270 155 DPRVRWAEGAGPGARP-RLYSVE--------------GTFPTQRLVIQELTLATQGMYYWARGPADRPHRYG---TWTRV 216 (466)
T ss_pred CcccccccCCCCCCCC-cccccc--------------CCCCcceEEEEEcccccceEEEEEEecCCCceeee---eEEEE
Confidence 3467777765555444 244442 11334579999999999999999987766643322 22444
Q ss_pred EeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC---eEEEEECCEEeecCCcEE---EEecCC---eeEEEEee
Q psy8139 444 TYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP---KVSWYKDGFEIFSSRRQR---IVTDND---ISTLIIHQ 514 (1101)
Q Consensus 444 ~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~---~v~W~~~g~~~~~~~~~~---~~~~~~---~~~l~I~~ 514 (1101)
... .+|.+...+ ..++.|+...-.|.+..+=++ .+.|+.|+..+....... ....++ .+++++..
T Consensus 217 ~~y----r~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea 290 (466)
T PHA03270 217 RMF----RRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEA 290 (466)
T ss_pred EEe----cCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccc
Confidence 432 455544333 347889999999988654333 589999999886322111 111122 12333222
Q ss_pred cCCC-CCEEEEEEEEeCCCce-EE----EEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC-CCeeEEEECCe
Q psy8139 515 AALM-DEGEIKCTATNRAGHS-IT----KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP-PPTARWLHNGE 587 (1101)
Q Consensus 515 l~~~-d~g~Y~C~a~n~~g~~-~~----s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p-~~~v~W~~~g~ 587 (1101)
.... ..=..+|.+.=..+.. .+ ++.-.|..+|.+.+ .+..|. ..|++.=-| ...+.|..++.
T Consensus 291 ~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv--------~F~dG~---AVCtA~CVPegV~l~W~V~D~ 359 (466)
T PHA03270 291 RAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEM--------EFGGDE---AVCTAACVPEGVTLAWLLGAD 359 (466)
T ss_pred cccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEE--------EEeCCE---EEEeccccCCCCEEEEEecCC
Confidence 2111 1126899876332222 21 22333444454421 223333 235444322 56899998766
Q ss_pred ecCC
Q psy8139 588 PLTS 591 (1101)
Q Consensus 588 ~l~~ 591 (1101)
+...
T Consensus 360 ~~pa 363 (466)
T PHA03270 360 PAPA 363 (466)
T ss_pred CCCC
Confidence 5543
No 338
>KOG0165|consensus
Probab=95.62 E-value=4.4 Score=47.82 Aligned_cols=110 Identities=30% Similarity=0.458 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHH-------------------------HH
Q psy8139 6 SDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIR--SKTIVIQKYFRGYLLMR-------------------------KE 58 (1101)
Q Consensus 6 ~~~~~~~~aa~~iQ~~~Rg~~~r~~~~~~~~~~~--~aa~~IQ~~~Rg~~~r~-------------------------~~ 58 (1101)
-+++..+.+++.||..|+.-+--+.....+-.+. .++.++|+..|+|..+. .-
T Consensus 340 ~r~~N~~~~ai~~q~~~~aGl~Lk~~~e~~~~~~~~~~~~R~~a~~r~~kI~~V~l~L~~~~sgl~T~~~~~~~~Vg~~~ 419 (1023)
T KOG0165|consen 340 TRFLNVRASAIIIQRKWRAGLPLKIAHEHFLMIKRHRAACRIQAHYRGYKIRQVSLRLKSAASGLITQKYIRAREVGKHE 419 (1023)
T ss_pred hHHhhHHHHHHHHhHhhhcCcchHHHHHHHHHHHHHHHHhhhHhHHHHhccceeEEEehhhhccccHHHHHHHHhhcccc
Confidence 3567788999999999999888887776655555 77889999999998430 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 59 RQEYLAMKSSAVKIQEWYRNLQCMRQARQQ--YLALKHATLKQREEFLKLKHATIAIQTLYKAKL 121 (1101)
Q Consensus 59 r~~~~~~~~aa~~iQ~~~R~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~aa~~iQ~~~R~~~ 121 (1101)
+..+-...+.....|+..+|+..++.+... +.... .....-+..-|+++|..+.+.+
T Consensus 420 ~i~~S~~~~~~~~~~a~~~g~~v~~~V~~~~~~~~~~------~~~~~~~~l~aL~~~~~y~~~l 478 (1023)
T KOG0165|consen 420 RIKYSEFKKSTVILQALVRGWLVRKRVEQRAKIRLLH------FTAAAYYHLNALRIQRAYKLYL 478 (1023)
T ss_pred cchhHHHHHHHHHHHhcccceeechhhhhcCCHHHHH------HHHHHHHHHHHHhhhhhhhHHH
Confidence 111222235556667788888777654222 11110 1112234455677777777554
No 339
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=95.59 E-value=0.14 Score=46.76 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=34.6
Q ss_pred ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640 (1101)
Q Consensus 602 ~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~ 640 (1101)
+..+|.|.+++..|.|.|+|...+..........|.|.+
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 467899999999999999999999888888888888764
No 340
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=95.58 E-value=0.092 Score=46.30 Aligned_cols=65 Identities=15% Similarity=0.403 Sum_probs=39.4
Q ss_pred CCeEEEEEEEecc-CCC-eEEEEECCEEeecCCc-EEEEec--CCeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139 467 DEKVEFTVQVEGI-PTP-KVSWYKDGFEIFSSRR-QRIVTD--NDISTLIIHQAALMDEGEIKCTATNRA 531 (1101)
Q Consensus 467 g~~v~L~C~~~g~-p~~-~v~W~~~g~~~~~~~~-~~~~~~--~~~~~l~I~~l~~~d~g~Y~C~a~n~~ 531 (1101)
++.++|.|.+.|. |.. .++|.++|........ .....+ +.-.....-.+...+...|+|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 6789999999995 443 8999999964322211 111112 111122233445567889999998754
No 341
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=95.58 E-value=0.12 Score=45.16 Aligned_cols=67 Identities=28% Similarity=0.475 Sum_probs=42.1
Q ss_pred CCeEEEEEEE-eccCCCeEEEEECCEEeecCCcEEE-EecCC----eeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139 467 DEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRI-VTDND----ISTLIIHQAALMDEGEIKCTATNRAGH 533 (1101)
Q Consensus 467 g~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~-~~~~~----~~~l~I~~l~~~d~g~Y~C~a~n~~g~ 533 (1101)
|+.+.+.|.+ .|.|.+.|+|+.++..+........ ...++ .+.|.+..-...+...++|.|.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 7899999965 6789999999999877721111111 11111 234555544445677899999987543
No 342
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=95.58 E-value=0.057 Score=49.55 Aligned_cols=70 Identities=19% Similarity=0.364 Sum_probs=50.1
Q ss_pred CeEEeeCCEEEEEEEEe-ecCCCeeEEEECCe-----ecC--------------CCCceEEEee--cceEEEEEccCCCC
Q psy8139 557 GLLFEMGEIIKLKVSMA-GMPPPTARWLHNGE-----PLT--------------SGGRYEITHT--DRYLNLRISDARRA 614 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~-----~l~--------------~~~~~~~~~~--~~~~sl~i~~l~~~ 614 (1101)
.+.+..|+++.|.|... ......+.|++... .+. ...+..+... ....+|.|.+|++.
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~ 89 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS 89 (114)
T ss_dssp EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred eEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence 34778899999999999 55677999997321 010 0122233332 23678999999999
Q ss_pred CCeEEEEEEEeC
Q psy8139 615 DRGEYQAHGVNS 626 (1101)
Q Consensus 615 ~~y~y~c~A~N~ 626 (1101)
|+|.|.|.+...
T Consensus 90 DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 90 DSGTYFCQVSTS 101 (114)
T ss_dssp GEEEEEEEEEES
T ss_pred cCEEEEEEEEEC
Confidence 999999999876
No 343
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=95.50 E-value=0.11 Score=47.14 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=33.1
Q ss_pred ceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEec
Q psy8139 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640 (1101)
Q Consensus 602 ~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~ 640 (1101)
+..+|.|.+|++.|.|.|.|..............|.|.+
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 467899999999999999999998776677777887764
No 344
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=95.46 E-value=0.049 Score=50.43 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=48.3
Q ss_pred CceeEEccCCeEEEEEEEeccC--CCeEEEEECC--E-E--ee--------------cCCcEEEEecC--CeeEEEEeec
Q psy8139 459 LHDTTALEDEKVEFTVQVEGIP--TPKVSWYKDG--F-E--IF--------------SSRRQRIVTDN--DISTLIIHQA 515 (1101)
Q Consensus 459 p~~~~v~~g~~v~L~C~~~g~p--~~~v~W~~~g--~-~--~~--------------~~~~~~~~~~~--~~~~l~I~~l 515 (1101)
|..+.+..|++++|.|...+.. ...+.|++.. . + +. ...++...... ....|+|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4556788999999999876433 4568999832 1 1 10 01234443332 3347999999
Q ss_pred CCCCCEEEEEEEEe
Q psy8139 516 ALMDEGEIKCTATN 529 (1101)
Q Consensus 516 ~~~d~g~Y~C~a~n 529 (1101)
.++|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998764
No 345
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=95.43 E-value=0.083 Score=45.31 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=42.5
Q ss_pred EEEEEEEee-cCCCeeEEEECCeecCCCCceEEEeecc-----eEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139 566 IKLKVSMAG-MPPPTARWLHNGEPLTSGGRYEITHTDR-----YLNLRISDARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 566 ~~l~c~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~~-----~~sl~i~~l~~~~~y~y~c~A~N~~G~ 629 (1101)
++|.|.+.| .|.+.++|+++|..+............+ .+.+.+..-...+...|+|.|.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 578999987 5788999999999876432222111111 234555544456678899999887554
No 346
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=95.41 E-value=0.086 Score=51.43 Aligned_cols=84 Identities=12% Similarity=0.157 Sum_probs=58.7
Q ss_pred eEEeeCCEEEEEEEEe-ecCCCeeEEEECCeecC----------C--CCceE-EEeecceEEEEEccCCCCCCeEEEEEE
Q psy8139 558 LLFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLT----------S--GGRYE-ITHTDRYLNLRISDARRADRGEYQAHG 623 (1101)
Q Consensus 558 ~~v~~g~~~~l~c~~~-g~p~~~v~W~~~g~~l~----------~--~~~~~-~~~~~~~~sl~i~~l~~~~~y~y~c~A 623 (1101)
+.+.+|++++|.|... +...+.+.|.+....+. + ..+.. +........++|.+++..|+|.|.|..
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 3677899999999985 65688999998533221 1 12333 233345688999999999999999987
Q ss_pred Ee-CCC-CceeEEEEEEecC
Q psy8139 624 VN-SLG-EDVASFLVTVTDR 641 (1101)
Q Consensus 624 ~N-~~G-~~~~s~~l~v~~~ 641 (1101)
.. +.| ..+....|+|++.
T Consensus 105 ~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EecCCCCCceeEEEEEEEch
Confidence 43 345 5566677777744
No 347
>PTZ00014 myosin-A; Provisional
Probab=95.32 E-value=0.041 Score=67.96 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 187 LKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKN 233 (1101)
Q Consensus 187 ~~~aa~~iQ~~~Rg~~~~~~~r~~~~~~~~a~i~iQ~~~Rg~~~R~~ 233 (1101)
....+..||+.|||+++ |+.|++.+.+++.||+.+|++++++.
T Consensus 776 ~~~~~~~iq~~~r~~~~----r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 776 WEPLVSVLEALILKIKK----KRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34578889999999888 88888889999999999999998764
No 348
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=95.31 E-value=0.041 Score=50.01 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=30.7
Q ss_pred ceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEE
Q psy8139 720 LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA 764 (1101)
Q Consensus 720 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A 764 (1101)
..|.|.|...++..-..... .....++|.+|.|++.|.|+|.|
T Consensus 44 ~~Y~v~~~~~~~~~~~~~~~--~~~~~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 44 LSYNVSYWKNGSNEKKKEIE--TKNSSVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp -EEEEEEEETTTSCEEEEEE--SSSEEEEEES--TTSEEEEEEEE
T ss_pred eEEEEEEEeCCCccceEEEe--ecCCEEEEeCCCCCCCEEEEEEE
Confidence 46999998888762222222 56677799999999999999999
No 349
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=95.08 E-value=0.083 Score=62.11 Aligned_cols=18 Identities=11% Similarity=-0.221 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy8139 133 LKQACVSVQQRWRANLTM 150 (1101)
Q Consensus 133 ~~~aa~~iQ~~~R~~~~r 150 (1101)
.....+++|.+-||+..|
T Consensus 405 ~llni~klq~L~nG~~iR 422 (1054)
T COG5261 405 ALLNIVKLQILGNGYEIR 422 (1054)
T ss_pred HHHHHHHHHHhhcceeee
Confidence 444556666666666654
No 350
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=95.07 E-value=0.15 Score=44.91 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=48.9
Q ss_pred EEEEEEEEeecC-CCeeEEEECCe----ecC-----C--------CCceEEE-eecceEEEEEccCCCCCCeEEEEEE-E
Q psy8139 565 IIKLKVSMAGMP-PPTARWLHNGE----PLT-----S--------GGRYEIT-HTDRYLNLRISDARRADRGEYQAHG-V 624 (1101)
Q Consensus 565 ~~~l~c~~~g~p-~~~v~W~~~g~----~l~-----~--------~~~~~~~-~~~~~~sl~i~~l~~~~~y~y~c~A-~ 624 (1101)
+++|.|.....+ ...|+|.+... .+. . .++..+. ......++.|.+++..|.|.|+|.+ .
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 467889876433 45799987321 110 0 1122222 2234679999999999999999997 4
Q ss_pred eCCCCceeEEEEEE
Q psy8139 625 NSLGEDVASFLVTV 638 (1101)
Q Consensus 625 N~~G~~~~s~~l~v 638 (1101)
.+.|+...+..|.|
T Consensus 82 fP~G~~~~~~~l~~ 95 (96)
T cd05887 82 FPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCCeeEEEEEEE
Confidence 56788777777776
No 351
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=95.06 E-value=0.11 Score=46.25 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=47.5
Q ss_pred CCEEEEEEEEeecCC-CeeEEEECCee----c----C-C--------CCceEE-EeecceEEEEEccCCCCCCeEEEEEE
Q psy8139 563 GEIIKLKVSMAGMPP-PTARWLHNGEP----L----T-S--------GGRYEI-THTDRYLNLRISDARRADRGEYQAHG 623 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~-~~v~W~~~g~~----l----~-~--------~~~~~~-~~~~~~~sl~i~~l~~~~~y~y~c~A 623 (1101)
|++++|.|....... ..+.|++.... + . . ..+..+ .......+|.|.+++..|+|.|.|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 577899998654432 36999874211 0 0 0 011111 12234678999999999999999997
Q ss_pred E-eCCCCceeEEEEEE
Q psy8139 624 V-NSLGEDVASFLVTV 638 (1101)
Q Consensus 624 ~-N~~G~~~~s~~l~v 638 (1101)
. .+.|.......|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 5 45565555555554
No 352
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=94.96 E-value=0.11 Score=47.94 Aligned_cols=69 Identities=17% Similarity=0.326 Sum_probs=49.6
Q ss_pred CeEEeeCCEEEEEEEEeec-CCCeeEEEEC--Ceec------------CCCCceEEEe--ecceEEEEEccCCCCCCeEE
Q psy8139 557 GLLFEMGEIIKLKVSMAGM-PPPTARWLHN--GEPL------------TSGGRYEITH--TDRYLNLRISDARRADRGEY 619 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~-p~~~v~W~~~--g~~l------------~~~~~~~~~~--~~~~~sl~i~~l~~~~~y~y 619 (1101)
.+.+..|++++|.|..... ....+.|++. +... ...+++.+.. .....+|.|.++.+.|+|.|
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y 87 (116)
T cd07706 8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY 87 (116)
T ss_pred ceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 4578889999999998754 4678999972 2110 0123455442 33467899999999999999
Q ss_pred EEEEEe
Q psy8139 620 QAHGVN 625 (1101)
Q Consensus 620 ~c~A~N 625 (1101)
.|.+.+
T Consensus 88 ~C~~~~ 93 (116)
T cd07706 88 FCALST 93 (116)
T ss_pred EEEEEC
Confidence 999875
No 353
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=94.84 E-value=0.13 Score=45.52 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=46.2
Q ss_pred EEeeCCEEEEEEEEee-cCCCe--eEEEECCeecCCCCceEE--EeecceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139 559 LFEMGEIIKLKVSMAG-MPPPT--ARWLHNGEPLTSGGRYEI--THTDRYLNLRISDARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g-~p~~~--v~W~~~g~~l~~~~~~~~--~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~ 629 (1101)
.+.+|..++|.|.+.| .|.+. |.|++++..+........ .......++++.--..++.-.|+|.|.+..+.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 4567999999999987 45555 799999988864221110 00112345666544444445999999988765
No 354
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=94.73 E-value=0.14 Score=41.46 Aligned_cols=61 Identities=34% Similarity=0.513 Sum_probs=45.1
Q ss_pred EEEEEEeecCCCeeEEEECCeecCCCCc----eEEEeecceEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139 567 KLKVSMAGMPPPTARWLHNGEPLTSGGR----YEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627 (1101)
Q Consensus 567 ~l~c~~~g~p~~~v~W~~~g~~l~~~~~----~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~ 627 (1101)
.|.|.+.+.+.+.+.|.+++........ ...........+.|.++...+.|.|.|.+.+..
T Consensus 2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred EEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 5789998888899999998776543321 111122236779999999999999999998765
No 355
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=94.68 E-value=0.26 Score=43.45 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=41.2
Q ss_pred eEEEEEEEecc-CCCeEEEEECCE----Eee-----------c--CCcEEEEec-CCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139 469 KVEFTVQVEGI-PTPKVSWYKDGF----EIF-----------S--SRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATN 529 (1101)
Q Consensus 469 ~v~L~C~~~g~-p~~~v~W~~~g~----~~~-----------~--~~~~~~~~~-~~~~~l~I~~l~~~d~g~Y~C~a~n 529 (1101)
.++|.|..... ....|+|.+... .+. . .++..+... ....+|.|.|++.+|+|.|.|...+
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t 81 (96)
T cd05889 2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVT 81 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEe
Confidence 57788876532 233578887421 111 0 123333211 2346899999999999999999876
Q ss_pred C-CCceEE
Q psy8139 530 R-AGHSIT 536 (1101)
Q Consensus 530 ~-~g~~~~ 536 (1101)
. .|....
T Consensus 82 ~P~g~~~~ 89 (96)
T cd05889 82 YPQGSWEK 89 (96)
T ss_pred CCCCCeEE
Confidence 4 444443
No 356
>smart00406 IGv Immunoglobulin V-Type.
Probab=94.60 E-value=0.13 Score=43.81 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=38.0
Q ss_pred eEEEEEEEeccCCC--eEEEEECCE-----Eee-------------cCCcEEEEec--CCeeEEEEeecCCCCCEEEEEE
Q psy8139 469 KVEFTVQVEGIPTP--KVSWYKDGF-----EIF-------------SSRRQRIVTD--NDISTLIIHQAALMDEGEIKCT 526 (1101)
Q Consensus 469 ~v~L~C~~~g~p~~--~v~W~~~g~-----~~~-------------~~~~~~~~~~--~~~~~l~I~~l~~~d~g~Y~C~ 526 (1101)
+++|.|.......+ .+.|++... .+. ...++.+... .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 36788877665543 678887321 010 1234444433 5567899999999999999996
No 357
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=94.58 E-value=0.13 Score=46.52 Aligned_cols=66 Identities=18% Similarity=0.408 Sum_probs=46.0
Q ss_pred EeeCCEEEEEEEEeecCCCeeEEEEC--C--eec------CC------------CCceEEEeecceEEEEEccCCCCCCe
Q psy8139 560 FEMGEIIKLKVSMAGMPPPTARWLHN--G--EPL------TS------------GGRYEITHTDRYLNLRISDARRADRG 617 (1101)
Q Consensus 560 v~~g~~~~l~c~~~g~p~~~v~W~~~--g--~~l------~~------------~~~~~~~~~~~~~sl~i~~l~~~~~y 617 (1101)
+..|+.++|.|.........+.|++- | ... .. ..++.........+|.|.++++.|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 56799999999987665667999973 2 110 00 12233333345668999999999999
Q ss_pred EEEEEEEe
Q psy8139 618 EYQAHGVN 625 (1101)
Q Consensus 618 ~y~c~A~N 625 (1101)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998753
No 358
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=94.56 E-value=0.47 Score=43.23 Aligned_cols=67 Identities=24% Similarity=0.460 Sum_probs=40.4
Q ss_pred EEccCCeEEEEEEEecc-C-CCeEEEEECCEEeecCCcEEEEecCCeeE------EEEeecCCCCCE-EEEEEEEeCC
Q psy8139 463 TALEDEKVEFTVQVEGI-P-TPKVSWYKDGFEIFSSRRQRIVTDNDIST------LIIHQAALMDEG-EIKCTATNRA 531 (1101)
Q Consensus 463 ~v~~g~~v~L~C~~~g~-p-~~~v~W~~~g~~~~~~~~~~~~~~~~~~~------l~I~~l~~~d~g-~Y~C~a~n~~ 531 (1101)
....|..++|.|.+.|. | ...++|++||..+..... .....+...+ |.+. ....|.+ .|+|.+....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCC
Confidence 44568889999999874 4 358999999998754322 2222221112 2222 2233433 4999998764
No 359
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=94.55 E-value=0.12 Score=46.12 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=48.3
Q ss_pred EEeeCCEEEEEEEEee-cCCCeeEEEECCee-----c--------CCCCceEEEe--ecceEEEEEccCCCCCCeEEEEE
Q psy8139 559 LFEMGEIIKLKVSMAG-MPPPTARWLHNGEP-----L--------TSGGRYEITH--TDRYLNLRISDARRADRGEYQAH 622 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g-~p~~~v~W~~~g~~-----l--------~~~~~~~~~~--~~~~~sl~i~~l~~~~~y~y~c~ 622 (1101)
.+..|++++|.|.... .+...+.|++.... + ...+++.+.. .....+|.|.+++..|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 5778999999998765 35678999874311 1 0123444432 23467899999999999999998
Q ss_pred EEeCC
Q psy8139 623 GVNSL 627 (1101)
Q Consensus 623 A~N~~ 627 (1101)
+.+..
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 87643
No 360
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=94.48 E-value=0.24 Score=43.40 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=40.0
Q ss_pred ccCCeEEEEEEEecc-C-CCeEEEEECCEEeecCCcE-EEEecCCeeEEEE---eecCCCCCEEEEEEEEeC
Q psy8139 465 LEDEKVEFTVQVEGI-P-TPKVSWYKDGFEIFSSRRQ-RIVTDNDISTLII---HQAALMDEGEIKCTATNR 530 (1101)
Q Consensus 465 ~~g~~v~L~C~~~g~-p-~~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I---~~l~~~d~g~Y~C~a~n~ 530 (1101)
..|...+|.|.+.|. | ...++|.++|..+. .... ....++ ..++.+ -.+.+++.-.|+|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~-d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSK-DWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECC-CCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 346667899999984 3 34689999999876 3211 122222 123332 234567777899998764
No 361
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=94.48 E-value=0.35 Score=43.86 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=39.9
Q ss_pred cceEEEEEEeCCCCCceeecc-cccCccEEEEcCCC--CCceEEEEEEEEcCCccC
Q psy8139 719 VLGYLVEHRRTGSPYWVRASP-HMVEDTELMVSGLE--PGWRYQFRITAENVVGFS 771 (1101)
Q Consensus 719 i~~Y~V~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~--p~t~Y~~~V~A~n~~G~g 771 (1101)
-..|.|+|+..+...|..+.. .....+.+-|++.. +...|.+||+|.-+...|
T Consensus 50 ~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~~~~~S 105 (107)
T PF01108_consen 50 NVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRAEVGNQTS 105 (107)
T ss_dssp TEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEEEETTEEE
T ss_pred CeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEEEeCCccC
Confidence 568999999777778988621 22456888887755 788999999998876654
No 362
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=94.44 E-value=0.16 Score=46.23 Aligned_cols=67 Identities=19% Similarity=0.362 Sum_probs=45.4
Q ss_pred EEeeCCEEEEEEEEeec-CCCeeEEEEC--Ce-ec--------CC-----------CCceEEE--eecceEEEEEccCCC
Q psy8139 559 LFEMGEIIKLKVSMAGM-PPPTARWLHN--GE-PL--------TS-----------GGRYEIT--HTDRYLNLRISDARR 613 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~-p~~~v~W~~~--g~-~l--------~~-----------~~~~~~~--~~~~~~sl~i~~l~~ 613 (1101)
.+.+|++++|.|...+. ....+.|++- |. +. .. ..++.+. .......|+|.++++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46779999999998764 3568999972 20 00 00 1233332 223346799999999
Q ss_pred CCCeEEEEEEEe
Q psy8139 614 ADRGEYQAHGVN 625 (1101)
Q Consensus 614 ~~~y~y~c~A~N 625 (1101)
.|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999863
No 363
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=94.39 E-value=0.072 Score=42.27 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=35.3
Q ss_pred ccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139 465 LEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529 (1101)
Q Consensus 465 ~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n 529 (1101)
..|++|+|+|...+. .+.|.+++..+.... ..+.+.+-. ++.|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~----------~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD----------EKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCCC----------ceEEeeccC-CCCceEEEEeCC
Confidence 579999999976532 399999985554321 134444444 789999999854
No 364
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=94.31 E-value=0.45 Score=40.48 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=45.1
Q ss_pred EEeeCCEEEEEEEEeecCCC--eeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139 559 LFEMGEIIKLKVSMAGMPPP--TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~ 626 (1101)
.+..|++++|.|.....+.| .+.|...+...- .....+..+|.+..+...|+|..+|.++-.
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK------QILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccc------eeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 46679999999999664444 999987654321 111123567889999999999999999643
No 365
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=94.28 E-value=0.38 Score=42.32 Aligned_cols=64 Identities=16% Similarity=0.262 Sum_probs=37.6
Q ss_pred cCCeEEEEEEEec-cCC-CeEEEEECCEEeecCCcE-EEEecCCeeEEEE---eecCCCCCEEEEEEEEeC
Q psy8139 466 EDEKVEFTVQVEG-IPT-PKVSWYKDGFEIFSSRRQ-RIVTDNDISTLII---HQAALMDEGEIKCTATNR 530 (1101)
Q Consensus 466 ~g~~v~L~C~~~g-~p~-~~v~W~~~g~~~~~~~~~-~~~~~~~~~~l~I---~~l~~~d~g~Y~C~a~n~ 530 (1101)
.+...+|.|.+.| .|. ..++|.++|..+...... ....+++ .++.+ -.+.+.+...|+|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~D-gty~~~s~L~v~~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQD-LSFQKFSYLNFTPEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCC-CcEEEEEEEEEECCCCCeEEEEEEeC
Confidence 3566799999998 343 478999999887543211 1111111 12221 123345666899998764
No 366
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=94.26 E-value=0.27 Score=41.26 Aligned_cols=62 Identities=19% Similarity=0.389 Sum_probs=37.3
Q ss_pred EEEEEEEecc-CC-CeEEEEECCEEeecCCcE-EEEec-CC----eeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139 470 VEFTVQVEGI-PT-PKVSWYKDGFEIFSSRRQ-RIVTD-ND----ISTLIIHQAALMDEGEIKCTATNRA 531 (1101)
Q Consensus 470 v~L~C~~~g~-p~-~~v~W~~~g~~~~~~~~~-~~~~~-~~----~~~l~I~~l~~~d~g~Y~C~a~n~~ 531 (1101)
++|.|.+.|. |. ..++|+++|..+...... ....+ ++ .+.|.+.....++...|+|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6799999885 44 589999999874332111 11111 11 1234444445567789999987653
No 367
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=94.06 E-value=0.017 Score=63.08 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=12.0
Q ss_pred ccccccccccccccccccCC
Q psy8139 1068 EIYHPKLMTMRSSQEDLDEA 1087 (1101)
Q Consensus 1068 ~~~~~~~~~~~~~~~~~~~~ 1087 (1101)
+.|-|..-|...+.+.++-.
T Consensus 123 ~~WtP~~~t~~~~~~~~~~~ 142 (458)
T PF10446_consen 123 EFWTPGATTAATSSSHLDVR 142 (458)
T ss_pred eeeccccccccccccccccc
Confidence 47778776666655554433
No 368
>PHA03269 envelope glycoprotein C; Provisional
Probab=94.02 E-value=9.8 Score=42.82 Aligned_cols=226 Identities=13% Similarity=0.048 Sum_probs=110.7
Q ss_pred cceEEEcCccCCccEEEEEEEEecC-CCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC-
Q psy8139 405 DTELMVSGLEPGWRYQFRITAENVV-GFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP- 482 (1101)
Q Consensus 405 ~~~l~i~~L~p~d~y~y~c~A~n~~-G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~- 482 (1101)
...|+|..|+..|+|.|.=...+.. |.... ...++|.+. .+|.+...+ ..++.|+...-.|.+..+=++
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~---~~~VtV~~y----r~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~ 358 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVIN---EHHITVMSY----KRPNITVIG--DPVLLGNPYAAYCKVNKYYPPH 358 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceee---eeEEEEEEe----cCCCccccC--CccccCCCceEEEEeeeecCCC
Confidence 3569999999999999976655422 21111 133444443 445443332 347899999999988654333
Q ss_pred --eEEEEECCEEeecCC---cEEEEecCCe---eEEEEeecCCCC--CEEEEEEEEeCCC-ceEE----EEEEeeccCCc
Q psy8139 483 --KVSWYKDGFEIFSSR---RQRIVTDNDI---STLIIHQAALMD--EGEIKCTATNRAG-HSIT----KARLRLEAPPT 547 (1101)
Q Consensus 483 --~v~W~~~g~~~~~~~---~~~~~~~~~~---~~l~I~~l~~~d--~g~Y~C~a~n~~g-~~~~----s~~l~V~~~p~ 547 (1101)
.++|+.||.++.... .+....+|.. +++++..-...+ .=..+|.+.=..+ .... ++.-.|..+|.
T Consensus 359 SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~Pt 438 (566)
T PHA03269 359 SVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPN 438 (566)
T ss_pred ceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCe
Confidence 589999998887421 1122222322 233331111111 2257998763322 2221 22233444444
Q ss_pred cccCCCCCCCeEEeeCCEEEEEEEEeecC--CCeeEEEECCeecCCCCceEEEe-ecceEEEEEcc---CCCC-CCeEEE
Q psy8139 548 IRLPKQYEDGLLFEMGEIIKLKVSMAGMP--PPTARWLHNGEPLTSGGRYEITH-TDRYLNLRISD---ARRA-DRGEYQ 620 (1101)
Q Consensus 548 ~~~~~~~~~~~~v~~g~~~~l~c~~~g~p--~~~v~W~~~g~~l~~~~~~~~~~-~~~~~sl~i~~---l~~~-~~y~y~ 620 (1101)
+. +.+..|. ..|.+.--| ...+.|..++.+...+....... .+..+-..|.+ |... ..-.|+
T Consensus 439 IS--------m~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYT 507 (566)
T PHA03269 439 VS--------IEIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYS 507 (566)
T ss_pred EE--------EEEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEE
Confidence 32 1233333 346655444 35899998776643322111110 01112233333 3322 236799
Q ss_pred EEEEe-CCCCceeEEEEEEecCCCCCCccEE
Q psy8139 621 AHGVN-SLGEDVASFLVTVTDRPLPPGKAKV 650 (1101)
Q Consensus 621 c~A~N-~~G~~~~s~~l~v~~~P~~P~~~~~ 650 (1101)
|.... ..+--..+..-.....|..+..+.+
T Consensus 508 CrL~GYP~~lP~Fsdt~~YDASP~a~~~PvV 538 (566)
T PHA03269 508 CHLDGYPKKFPPFSAVYTYDASSSASTFPLI 538 (566)
T ss_pred EEEeecCCCCCccceeeeecCCCcccCCcee
Confidence 98753 2222223333333344544444433
No 369
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=93.87 E-value=0.36 Score=44.83 Aligned_cols=69 Identities=20% Similarity=0.303 Sum_probs=46.9
Q ss_pred CeEEeeCCEEEEEEEEeecC------CCeeEEEECCe------ec---C--------CCCceEEE--eecceEEEEEccC
Q psy8139 557 GLLFEMGEIIKLKVSMAGMP------PPTARWLHNGE------PL---T--------SGGRYEIT--HTDRYLNLRISDA 611 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p------~~~v~W~~~g~------~l---~--------~~~~~~~~--~~~~~~sl~i~~l 611 (1101)
.+.+..|+.++|.|...... ...+.|++... .+ . ..+++.+. ...+..+|.|.++
T Consensus 8 ~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l 87 (119)
T cd05712 8 SVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDA 87 (119)
T ss_pred EEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccC
Confidence 45788899999999865332 35689997321 11 0 01244442 2344678999999
Q ss_pred CCCCCeEEEEEEEe
Q psy8139 612 RRADRGEYQAHGVN 625 (1101)
Q Consensus 612 ~~~~~y~y~c~A~N 625 (1101)
+..|+|.|.|....
T Consensus 88 ~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 88 QPEDSGKYFFRVEL 101 (119)
T ss_pred ChhhCeEEEEEEEc
Confidence 99999999998755
No 370
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=93.83 E-value=0.11 Score=46.51 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=38.6
Q ss_pred EccCCeEEEEEEEec-cC-CCeEEEEECCEEeecCCcE-E-EEecCC-e---eEEEEeecCCCCCEEEEEEEEeCC
Q psy8139 464 ALEDEKVEFTVQVEG-IP-TPKVSWYKDGFEIFSSRRQ-R-IVTDND-I---STLIIHQAALMDEGEIKCTATNRA 531 (1101)
Q Consensus 464 v~~g~~v~L~C~~~g-~p-~~~v~W~~~g~~~~~~~~~-~-~~~~~~-~---~~l~I~~l~~~d~g~Y~C~a~n~~ 531 (1101)
...+..++|.|.+.| .| ...|+|+++|..+...... . ....++ - +.|.+..-.-.+...|+|.+....
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 345677999999987 44 4579999999987532110 1 111122 1 122222222223568999987754
No 371
>PHA03273 envelope glycoprotein C; Provisional
Probab=93.74 E-value=13 Score=41.87 Aligned_cols=161 Identities=18% Similarity=0.182 Sum_probs=87.3
Q ss_pred ceEEEcCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccCCC---
Q psy8139 406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP--- 482 (1101)
Q Consensus 406 ~~l~i~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~--- 482 (1101)
..|+|..|+..++|.|.-...+..|..... ..++|... .+|.+...+ ..++.|+...-.|.+...=++
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~---~~VtV~~y----r~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv 268 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNS---TSVTVSTY----NAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSV 268 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeee---eEEEEEEe----cCCcccccC--CccccCCCceEEEEeeeecCCCce
Confidence 349999999999999986655554432211 22333322 455544333 347899999999988654333
Q ss_pred eEEEEECCEEeecCC----cEEEEecCC---eeEEEEeecCC-CCCEEEEEEEEeCCCc-eEE----EEEEeeccCCccc
Q psy8139 483 KVSWYKDGFEIFSSR----RQRIVTDND---ISTLIIHQAAL-MDEGEIKCTATNRAGH-SIT----KARLRLEAPPTIR 549 (1101)
Q Consensus 483 ~v~W~~~g~~~~~~~----~~~~~~~~~---~~~l~I~~l~~-~d~g~Y~C~a~n~~g~-~~~----s~~l~V~~~p~~~ 549 (1101)
.+.|+.||.++.... ......++. .++|++.+... ...=..+|.+.=..+. ... ++.-.|..+|.+.
T Consensus 269 ~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is 348 (486)
T PHA03273 269 KLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVS 348 (486)
T ss_pred EEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEE
Confidence 589999999887221 111122222 12333333221 1222689987633222 211 1223344444432
Q ss_pred cCCCCCCCeEEeeCCEEEEEEEEeecC--CCeeEEEECC
Q psy8139 550 LPKQYEDGLLFEMGEIIKLKVSMAGMP--PPTARWLHNG 586 (1101)
Q Consensus 550 ~~~~~~~~~~v~~g~~~~l~c~~~g~p--~~~v~W~~~g 586 (1101)
+.+..|. ..|.+.=-| ...+.|..++
T Consensus 349 --------~~F~~G~---AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 349 --------VTVEDGD---AVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred --------EEEeCCE---EEEecccccCCCeeEEEEccC
Confidence 1233333 346665444 4789998766
No 372
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=93.41 E-value=0.62 Score=39.01 Aligned_cols=62 Identities=23% Similarity=0.328 Sum_probs=38.5
Q ss_pred EEEEEEEeec-C-CCeeEEEECCeecCCCCce-EEEeecc-----eEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139 566 IKLKVSMAGM-P-PPTARWLHNGEPLTSGGRY-EITHTDR-----YLNLRISDARRADRGEYQAHGVNSL 627 (1101)
Q Consensus 566 ~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~~-~~~~~~~-----~~sl~i~~l~~~~~y~y~c~A~N~~ 627 (1101)
++|.|.+.|. | .+.+.|+++|.++..+... .....++ .+.|.+......+...|+|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 5799999986 4 4699999999875433211 1111111 2334454445667789999987653
No 373
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=93.38 E-value=0.75 Score=41.89 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=40.6
Q ss_pred eeCCEEEEEEEEeec-C-CCeeEEEECCeecCCCCceEEEeecc------eEEEEEccCCCCCCe-EEEEEEEeCCCC
Q psy8139 561 EMGEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGRYEITHTDR------YLNLRISDARRADRG-EYQAHGVNSLGE 629 (1101)
Q Consensus 561 ~~g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~~~~~~~~~------~~sl~i~~l~~~~~y-~y~c~A~N~~G~ 629 (1101)
..|+.++|.|.+.|. | ...++|.+||..+..+.. .....++ .+.|.+. ...++.+ .|+|.+......
T Consensus 19 ~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 19 NPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred CCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCCC
Confidence 357778999999985 4 469999999999864321 1111111 2223333 3334434 499998775433
No 374
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=93.33 E-value=0.77 Score=40.44 Aligned_cols=66 Identities=15% Similarity=0.325 Sum_probs=39.3
Q ss_pred cCCeEEEEEEEecc-CCC-eEEEEECCEEeecCCc-EEEEecC--CeeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139 466 EDEKVEFTVQVEGI-PTP-KVSWYKDGFEIFSSRR-QRIVTDN--DISTLIIHQAALMDEGEIKCTATNRA 531 (1101)
Q Consensus 466 ~g~~v~L~C~~~g~-p~~-~v~W~~~g~~~~~~~~-~~~~~~~--~~~~l~I~~l~~~d~g~Y~C~a~n~~ 531 (1101)
.|..++|.|.+.|. |.. .++|.++|..+..... .....++ .-.....-.+.+++...|+|.+....
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 57889999999884 433 7899999988654311 1111111 11111122334456668999987654
No 375
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=93.29 E-value=0.42 Score=42.04 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=37.7
Q ss_pred CCEEEEEEEEeec-CC-CeeEEEECCeecCCCCce-EEEeecc--eEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139 563 GEIIKLKVSMAGM-PP-PTARWLHNGEPLTSGGRY-EITHTDR--YLNLRISDARRADRGEYQAHGVNSL 627 (1101)
Q Consensus 563 g~~~~l~c~~~g~-p~-~~v~W~~~g~~l~~~~~~-~~~~~~~--~~sl~i~~l~~~~~y~y~c~A~N~~ 627 (1101)
++.++|.|.+.|. |. ..+.|.++|.....+... .....++ -.....-.+.+.+...|+|.+.+..
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 5678999999995 43 489999998643322111 1111111 1111122344457789999997653
No 376
>PHA02982 hypothetical protein; Provisional
Probab=93.12 E-value=0.99 Score=44.43 Aligned_cols=119 Identities=15% Similarity=0.268 Sum_probs=73.5
Q ss_pred eeEEccCCeEEEEEEEeccC-CCeEEEEECC-EEee----------c--------CCcEEEEecCCeeEEEEeecCCCCC
Q psy8139 461 DTTALEDEKVEFTVQVEGIP-TPKVSWYKDG-FEIF----------S--------SRRQRIVTDNDISTLIIHQAALMDE 520 (1101)
Q Consensus 461 ~~~v~~g~~v~L~C~~~g~p-~~~v~W~~~g-~~~~----------~--------~~~~~~~~~~~~~~l~I~~l~~~d~ 520 (1101)
++....++++.|.|...... -....|..+. ..+. . ...+.+..++..++|+|.++.+...
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 44566789999999853322 2357788742 2221 1 1345667778889999999999999
Q ss_pred EEEEEEEEeCCCceEE-EEEEeeccCCccccCCCCCCCeEEee-CCEEEEEEEEeecCCCeeEEEECCee
Q psy8139 521 GEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEM-GEIIKLKVSMAGMPPPTARWLHNGEP 588 (1101)
Q Consensus 521 g~Y~C~a~n~~g~~~~-s~~l~V~~~p~~~~~~~~~~~~~v~~-g~~~~l~c~~~g~p~~~v~W~~~g~~ 588 (1101)
|.|+|.+....+.... .--|.|+....+ ..... .....+.|-+-....+...|..+|..
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~---------~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEIQKEDIL---------YVVEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred CceEEEEecCCCchheeheeeeEecceEE---------EEEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 9999999987665443 223333211110 01112 33456778776655544488877754
No 377
>KOG1480|consensus
Probab=93.11 E-value=0.067 Score=62.39 Aligned_cols=173 Identities=16% Similarity=0.253 Sum_probs=99.5
Q ss_pred CCCCeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCee-------EEEEeecCC-----
Q psy8139 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS-------TLIIHQAAL----- 517 (1101)
Q Consensus 450 ~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~-------~l~I~~l~~----- 517 (1101)
..-|.|+..|.+-.+..+.++.+.|.+...+.. ...-++.-+.......+......+ ...|.....
T Consensus 22 g~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i--~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~ 99 (909)
T KOG1480|consen 22 GDLPHFTTEPKSAYIIKNKPLRLQCKANPATQI--RFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGG 99 (909)
T ss_pred CCcceeeecCCccceecCCCccceecCCccccc--ccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccC
Confidence 355778888888899999999999998755543 222222222221111111111100 122222222
Q ss_pred CCCEEEEEEEEeCCCceEEE-EEEeecc-CCccccCCCCCCCeEEeeCCEEEEEEEE-eecCCCeeEEEECCeecCCCCc
Q psy8139 518 MDEGEIKCTATNRAGHSITK-ARLRLEA-PPTIRLPKQYEDGLLFEMGEIIKLKVSM-AGMPPPTARWLHNGEPLTSGGR 594 (1101)
Q Consensus 518 ~d~g~Y~C~a~n~~g~~~~s-~~l~V~~-~p~~~~~~~~~~~~~v~~g~~~~l~c~~-~g~p~~~v~W~~~g~~l~~~~~ 594 (1101)
-+.+.-+|.|....|...+. +.+.+.+ ...+...| ....|..+..+.+.|.. .+.|...+.|++++..+.+...
T Consensus 100 ~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p---~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n 176 (909)
T KOG1480|consen 100 PEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSP---VGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDAN 176 (909)
T ss_pred ccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccCh---hhheecccccccccccCcccchhhhhhccccCCCCCcccc
Confidence 23455677787777732221 1122211 11111111 12256667777777754 5888899999999988876443
Q ss_pred eEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139 595 YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630 (1101)
Q Consensus 595 ~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~ 630 (1101)
..... ...+++......+.++|+|.|.|..+..
T Consensus 177 ~~~~~---d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 177 VIRAS---DHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred chhhh---cCCccccchhhhhcccceeeeehhhccc
Confidence 33322 4567888888899999999999987754
No 378
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=92.92 E-value=0.32 Score=42.89 Aligned_cols=76 Identities=9% Similarity=-0.100 Sum_probs=43.0
Q ss_pred ccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCc---eEEcCccccccceEEEcCccCCccEEEEEEEEec
Q psy8139 353 LLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY---WVRASPHMVEDTELMVSGLEPGWRYQFRITAENV 428 (1101)
Q Consensus 353 ~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~---w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~ 428 (1101)
.|.|..........|+|..-...+...|..|...+...-... ..........+.+++|.||+..|+|.|+|...+.
T Consensus 4 tL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~ 82 (96)
T cd05889 4 KLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTY 82 (96)
T ss_pred EEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeC
Confidence 345554444567889998853222234444433321110011 1111111125689999999999999999999775
No 379
>KOG3632|consensus
Probab=92.85 E-value=0.61 Score=56.05 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=96.1
Q ss_pred CCeEEEEEEEeCCCCcee-EEEEEEe-cCCCCCCccEEEEecCCeEEEEeecCCCCC-----------------------
Q psy8139 615 DRGEYQAHGVNSLGEDVA-SFLVTVT-DRPLPPGKAKVVMTLGKSVTLSWSEPEDDG----------------------- 669 (1101)
Q Consensus 615 ~~y~y~c~A~N~~G~~~~-s~~l~v~-~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~----------------------- 669 (1101)
..|..++.+..+.|.... ...|.+- ..|..|.++.+.+.+.++..++|-+-..+.
T Consensus 643 ~s~~isvq~ltSrGsqd~lrc~Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~nsn~~Hviyln~eE~~ps~a~~y~ytf 722 (1335)
T KOG3632|consen 643 HSGYISVQRLTSRGSQDQLRCILLVGGAAPVVPSQLRVWNATQTSAMITWVPFNSNFLHVIYLNAEEPRPSVAEMYNYTF 722 (1335)
T ss_pred CceeeehhhhhccCCCCcceeeEeccccccccchhhhhhhhhchhhheeeeecCCCcceeeecCCccCCCchhhhhHHHH
Confidence 455556555566665543 2333332 467899999999999999999998532110
Q ss_pred --CcccceeEEEE--------------------------Ec-CCCCCCCCcccCCCCCCCCceEEEEeeCCCC-----CC
Q psy8139 670 --GCKIGNYIVEY--------------------------FR-PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEY-----DG 715 (1101)
Q Consensus 670 --g~~i~~Y~v~~--------------------------~~-~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~-----~~ 715 (1101)
-.+-+.|.+.. .+ ..|||.+|..+..-+..++..+.++|.||.. .|
T Consensus 723 ~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sn 802 (1335)
T KOG3632|consen 723 MRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSN 802 (1335)
T ss_pred hccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccC
Confidence 01234444443 11 1567777777777778899999999999744 45
Q ss_pred CCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCC-CceEEEEEEEEcCCccCC
Q psy8139 716 GSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP-GWRYQFRITAENVVGFSE 772 (1101)
Q Consensus 716 ~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~A~n~~G~g~ 772 (1101)
|..++||-|+... .....+.......+.+.+..|.. ...-.|.|+....-|.+-
T Consensus 803 gv~vtgYavyadg---qkv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesv 857 (1335)
T KOG3632|consen 803 GVAVTGYAVYADG---QKVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESV 857 (1335)
T ss_pred ceeeeeeeeeeCC---ceeeeeecccCCceEEEeeeehhhheecceeEEecccCcccc
Confidence 5668999998762 22233332213334445555655 445566777666667643
No 380
>KOG4152|consensus
Probab=92.31 E-value=0.2 Score=55.57 Aligned_cols=67 Identities=22% Similarity=0.175 Sum_probs=48.1
Q ss_pred EEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCCCCcccc-cccccceeccccCCCCCCcc
Q psy8139 748 MVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR-ALHDTTALEDEKPRNTNNCD 816 (1101)
Q Consensus 748 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~~p~~~~-~~~~s~~~~~w~p~~~~~~~ 816 (1101)
.-..|.+|+.|+|+|.|.|..|.|++|......|.- +.-|..|.... ..+-..+-+.|.||..++..
T Consensus 650 ~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~--pG~P~apS~~ri~k~~eGi~l~weppt~p~sg 717 (830)
T KOG4152|consen 650 VKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCA--PGKPTAPSGARIKKTIEGISLVWEPPTKPGSG 717 (830)
T ss_pred cccccccccceeeeeeeeeccCCCchhhheeeeecc--CCCCCCcccccccccccceeecccCCCCCCCc
Confidence 345789999999999999999999999888777653 33333444443 33334566789998887654
No 381
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=92.31 E-value=0.58 Score=43.25 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=46.8
Q ss_pred CeEEeeCCEEEEEEEEeecC--CCeeEEEE--CC-ee--c---C-----------CCCceEEEeec--ceEEEEEccCCC
Q psy8139 557 GLLFEMGEIIKLKVSMAGMP--PPTARWLH--NG-EP--L---T-----------SGGRYEITHTD--RYLNLRISDARR 613 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g~p--~~~v~W~~--~g-~~--l---~-----------~~~~~~~~~~~--~~~sl~i~~l~~ 613 (1101)
.+.+..|++++|.|...+.. ...+.|++ .| .+ + . ...++...... ....|+|.++++
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP 85 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence 44788899999999876543 46799986 22 11 0 0 01234443322 235799999999
Q ss_pred CCCeEEEEEEEe
Q psy8139 614 ADRGEYQAHGVN 625 (1101)
Q Consensus 614 ~~~y~y~c~A~N 625 (1101)
+|++.|.|.+..
T Consensus 86 ~Dsa~YyCa~~~ 97 (117)
T cd04981 86 EDTAVYYCARGL 97 (117)
T ss_pred HHCEEEEEEEEc
Confidence 999999998764
No 382
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=92.03 E-value=1.2 Score=39.36 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=37.2
Q ss_pred CeEEEEEEE-eccCCCeEEEEECCEEeecCCcEEEEecCC---eeEEEEeecCCCCCEEEEEEEEeCCCc
Q psy8139 468 EKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDND---ISTLIIHQAALMDEGEIKCTATNRAGH 533 (1101)
Q Consensus 468 ~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~---~~~l~I~~l~~~d~g~Y~C~a~n~~g~ 533 (1101)
....+.|.+ .|.|.+.|+|+++..... ........++. .+.|.+......+.-.|+|.+.+..-.
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence 346688987 689999999998611100 00000111111 235555444445566899999987643
No 383
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=91.93 E-value=0.39 Score=38.22 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=35.1
Q ss_pred EeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEe
Q psy8139 560 FEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625 (1101)
Q Consensus 560 v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N 625 (1101)
...|.+++|+|..... .+.|.+++..+... ...+.+.+-. .+.|.|.|.+.+
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~----------~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGS----------DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEeCCccCCCC----------CceEEeeccC-CCCceEEEEeCC
Confidence 3458899999976533 39999998555432 2233344444 789999999854
No 384
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=91.89 E-value=1.1 Score=39.47 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=37.6
Q ss_pred cCCeEEEEEEEec-cCC-CeEEEEECCEEeecCCc--EEEEecCCe----eEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139 466 EDEKVEFTVQVEG-IPT-PKVSWYKDGFEIFSSRR--QRIVTDNDI----STLIIHQAALMDEGEIKCTATNRAG 532 (1101)
Q Consensus 466 ~g~~v~L~C~~~g-~p~-~~v~W~~~g~~~~~~~~--~~~~~~~~~----~~l~I~~l~~~d~g~Y~C~a~n~~g 532 (1101)
.+..++|.|.+.| .|. ..|+|.++|..+..... ......++. +.|.+..-.-.+...|+|.+.....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence 4566899999988 343 57899999987632211 111112221 1222221111245689999987543
No 385
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=91.82 E-value=1.2 Score=38.58 Aligned_cols=67 Identities=19% Similarity=0.400 Sum_probs=41.8
Q ss_pred CCEEEEEEEEe-ecCCCeeEEEECCeecCCCCceEEEe-ec----ceEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139 563 GEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITH-TD----RYLNLRISDARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 563 g~~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~~-~~----~~~sl~i~~l~~~~~y~y~c~A~N~~G~ 629 (1101)
|..+.+.|.+. +.|.+.|+|+.++..+.......... .+ ..+.|.+..-...+...|+|.|.|..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 56899999665 67899999999987772111111111 11 1245556544445778899999987543
No 386
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=91.27 E-value=49 Score=41.55 Aligned_cols=72 Identities=13% Similarity=0.240 Sum_probs=43.7
Q ss_pred CCCceEEEEeeCCCCC-CCCCcceEEEEEEeCCCC---Cc---eeec-----c-cccCccEEEE--cCC--CCCceEEEE
Q psy8139 699 LDRDVFTIRWEPPEYD-GGSPVLGYLVEHRRTGSP---YW---VRAS-----P-HMVEDTELMV--SGL--EPGWRYQFR 761 (1101)
Q Consensus 699 ~~~~si~l~W~pP~~~-~~~~i~~Y~V~~~~~~~~---~~---~~~~-----~-~~~~~~~~~i--~~L--~p~t~Y~~~ 761 (1101)
.....|.|+|+.|..+ ..+....|.|.|...-.+ .+ ..++ . ..+....+++ .+. ..++.|.|-
T Consensus 766 ~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~~~~~~~~~~~~~a 845 (863)
T TIGR00868 766 FQGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPEGIPIENGTDLFIA 845 (863)
T ss_pred ecCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCCcccccCCeEEEEE
Confidence 4566799999999773 234478999998754110 00 0111 1 1122233333 332 257899999
Q ss_pred EEEEcCCcc
Q psy8139 762 ITAENVVGF 770 (1101)
Q Consensus 762 V~A~n~~G~ 770 (1101)
|+|++..|.
T Consensus 846 i~a~d~~~~ 854 (863)
T TIGR00868 846 VQAIDKANL 854 (863)
T ss_pred EEEEccccc
Confidence 999999875
No 387
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=91.22 E-value=25 Score=38.03 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=24.2
Q ss_pred cccceEEEcCccCCccEEEEEEEEecCC
Q psy8139 403 VEDTELMVSGLEPGWRYQFRITAENVVG 430 (1101)
Q Consensus 403 ~~~~~l~i~~L~p~d~y~y~c~A~n~~G 430 (1101)
+..+.++|.+|.|++.|.|.|.|.|..-
T Consensus 12 g~~t~~t~~~L~p~t~YyfdVF~vn~~~ 39 (300)
T PF10179_consen 12 GQKTNQTLSGLKPDTTYYFDVFVVNQLT 39 (300)
T ss_pred CCCceEEeccCCCCCeEEEEEEEEECCC
Confidence 3457899999999999999999999743
No 388
>KOG4228|consensus
Probab=91.09 E-value=0.55 Score=57.99 Aligned_cols=236 Identities=14% Similarity=0.114 Sum_probs=118.4
Q ss_pred EEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEE-ECCeecCCCCceEEEee
Q psy8139 522 EIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWL-HNGEPLTSGGRYEITHT 600 (1101)
Q Consensus 522 ~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~-~~g~~l~~~~~~~~~~~ 600 (1101)
.|+|.+....|.....+.+.|...|.....+... ....-..+...|.... ...|+ ........+ +.....
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt---~~~~~~~~~~~~~~~t----~~~~y~v~~~~~~s~--~~~~~~ 71 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVT---GSTATSWVQAELLGST----WPNYYQVIFKALSSG--YGYIDV 71 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcccc---cccccceeehhhccCC----ChhhhheeeeEeccC--cceeec
Confidence 3899999988888888888887755433222111 1111111222232222 12222 112222211 222222
Q ss_pred cceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEe----cCCCCCCccEEEEecCCeEEEEeecCCCCCC------
Q psy8139 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT----DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGG------ 670 (1101)
Q Consensus 601 ~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~----~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g------ 670 (1101)
.....+....+.+.+.+.+ .+.|..|.+..+..+.-. .++..+............+.++|..+....+
T Consensus 72 ~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 149 (1087)
T KOG4228|consen 72 DLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSATVGPLAIAS 149 (1087)
T ss_pred cceeecccCCCCCcchhhh--hhcccccccccccccCCccccccccccccchhhhhhhhhhhccCcccccccccccccCC
Confidence 2233344555555555555 666666654332211111 1223333333333444555566665432221
Q ss_pred ---cccceeEEEEEcCCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEE
Q psy8139 671 ---CKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTEL 747 (1101)
Q Consensus 671 ---~~i~~Y~v~~~~~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~ 747 (1101)
.+. .+.+......+.|..+. ...+.++++++|.+|.. ..+..|.+.+...+......+.. ....+.
T Consensus 150 ~~~~~~-~t~i~i~~~~~~p~~~~-----~~~~~~~it~~w~~~~~---~~~~~ykl~~~~~d~~~~~~v~~--~~~~~~ 218 (1087)
T KOG4228|consen 150 PGLGPP-STYIQITTNANSPIQPG-----EEEEYTTITGSWSPPHA---VSLDTYKLLHLDPDTGYEISVTL--TPPGSG 218 (1087)
T ss_pred cccCCC-CceEEEeccCCCCCCCC-----cceEEEEEEecCCCCCc---ccchhhhhhhcCCcccceeeeec--cCCCCC
Confidence 222 33333333334343333 35678899999998632 34778888777665443333332 344455
Q ss_pred EEcCCCCCceEEEEEEEEcCCccCCCCCCCCc
Q psy8139 748 MVSGLEPGWRYQFRITAENVVGFSEPGPLSEP 779 (1101)
Q Consensus 748 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~ 779 (1101)
...++.|...|.++|.+....+.+.+.+....
T Consensus 219 ~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~ 250 (1087)
T KOG4228|consen 219 GTGDLGPPSISRFKCAEPDRGPLGSSTAEIEA 250 (1087)
T ss_pred cccCCCCcccccccccCccccccCCCCcceEE
Confidence 66678888899999988877766554443333
No 389
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=91.02 E-value=1 Score=39.53 Aligned_cols=30 Identities=37% Similarity=0.639 Sum_probs=23.6
Q ss_pred CCEEEEEEEEeec-C-CCeeEEEECCeecCCC
Q psy8139 563 GEIIKLKVSMAGM-P-PPTARWLHNGEPLTSG 592 (1101)
Q Consensus 563 g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~ 592 (1101)
+...+|.|.+.|. | ...++|.++|..+..+
T Consensus 15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~ 46 (94)
T cd05767 15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDG 46 (94)
T ss_pred CCCeEEEEEEEEEECCcCEEEEEECCeEccCc
Confidence 4556899999984 4 5789999999987643
No 390
>KOG4427|consensus
Probab=90.69 E-value=0.69 Score=53.92 Aligned_cols=42 Identities=29% Similarity=0.342 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q psy8139 265 LKREQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQA 306 (1101)
Q Consensus 265 ~~~~~~~~~~~~~~aa~~iQs~~r~~~~r~~~~~~~~~~~~~ 306 (1101)
..++++...+++++||+.||+.||+|..|++|+.-++.....
T Consensus 18 qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~I~~e~d~ 59 (1096)
T KOG4427|consen 18 QEREERSYQRRREAAALFIQRVLRSYLVRKKAQIEIQEEFDN 59 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667778999999999999999999998766643333
No 391
>smart00406 IGv Immunoglobulin V-Type.
Probab=90.67 E-value=0.8 Score=38.71 Aligned_cols=57 Identities=25% Similarity=0.435 Sum_probs=36.8
Q ss_pred EEEEEEEeecCCC--eeEEEECCe--e---c-------------CCCCceEEEee--cceEEEEEccCCCCCCeEEEEE
Q psy8139 566 IKLKVSMAGMPPP--TARWLHNGE--P---L-------------TSGGRYEITHT--DRYLNLRISDARRADRGEYQAH 622 (1101)
Q Consensus 566 ~~l~c~~~g~p~~--~v~W~~~g~--~---l-------------~~~~~~~~~~~--~~~~sl~i~~l~~~~~y~y~c~ 622 (1101)
+.|.|.......+ .+.|++... . + ....++.+... .+..+|.|.++++.|+|.|.|.
T Consensus 2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 5678877765543 788876321 1 0 01233443333 4567899999999999999995
No 392
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=90.66 E-value=1.7 Score=37.28 Aligned_cols=63 Identities=24% Similarity=0.398 Sum_probs=40.0
Q ss_pred CCeEEEEEEEecc-CCC-eEEEEECCEEeecCCcEEEEe--cCCe----eEEEEeecCCCCCEEEEEEEEeCCC
Q psy8139 467 DEKVEFTVQVEGI-PTP-KVSWYKDGFEIFSSRRQRIVT--DNDI----STLIIHQAALMDEGEIKCTATNRAG 532 (1101)
Q Consensus 467 g~~v~L~C~~~g~-p~~-~v~W~~~g~~~~~~~~~~~~~--~~~~----~~l~I~~l~~~d~g~Y~C~a~n~~g 532 (1101)
+..++|.|.+.+. |.. .|.|.++|..+.......... .++. +.|.+. ..+...|+|.+.....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 7889999999874 433 699999998876443222111 2221 233333 4556689999987643
No 393
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=90.61 E-value=1.1 Score=39.26 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=38.0
Q ss_pred CCEEEEEEEEeec-C-CCeeEEEECCeecCCCCceEEEeecceEEEEE---ccCCCCCCeEEEEEEEeC
Q psy8139 563 GEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGRYEITHTDRYLNLRI---SDARRADRGEYQAHGVNS 626 (1101)
Q Consensus 563 g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i---~~l~~~~~y~y~c~A~N~ 626 (1101)
|....|.|.+.|. | ...++|.+||.++. +.........++.++.+ -.+.+.+.-.|+|.+.-.
T Consensus 15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 5566899999985 3 56889999999886 32221111111222221 134466677788887653
No 394
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=90.56 E-value=1.4 Score=39.82 Aligned_cols=68 Identities=10% Similarity=-0.025 Sum_probs=44.7
Q ss_pred ceeEEccCCeEEEEEEEeccCC---CeEEEEEC--CE-E-ee-----------cCCcEE--EEecCCeeEEEEeecCCCC
Q psy8139 460 HDTTALEDEKVEFTVQVEGIPT---PKVSWYKD--GF-E-IF-----------SSRRQR--IVTDNDISTLIIHQAALMD 519 (1101)
Q Consensus 460 ~~~~v~~g~~v~L~C~~~g~p~---~~v~W~~~--g~-~-~~-----------~~~~~~--~~~~~~~~~l~I~~l~~~d 519 (1101)
....+..|..++|.|.+.|... ..+.|.+. +. . +. ...++. ...+.+..+|++.+|..+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 3455777888999999976443 35788873 21 0 00 112222 2223456689999999999
Q ss_pred CEEEEEEE
Q psy8139 520 EGEIKCTA 527 (1101)
Q Consensus 520 ~g~Y~C~a 527 (1101)
.+.|.|..
T Consensus 86 Ta~Y~Ca~ 93 (115)
T cd05721 86 TDIYFCKI 93 (115)
T ss_pred CeEEEEEe
Confidence 99999975
No 395
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=90.16 E-value=0.72 Score=41.35 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=24.4
Q ss_pred EccCCeEEEEEEEeccCCC--eEEEEECCEEeec
Q psy8139 464 ALEDEKVEFTVQVEGIPTP--KVSWYKDGFEIFS 495 (1101)
Q Consensus 464 v~~g~~v~L~C~~~g~p~~--~v~W~~~g~~~~~ 495 (1101)
+..+..++|.|.+.|.-+. .++|.++|..+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~ 46 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSK 46 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence 3346789999999985433 6899999988653
No 396
>PHA03270 envelope glycoprotein C; Provisional
Probab=89.73 E-value=16 Score=40.59 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=59.7
Q ss_pred EEEEeecCCCCCEEEEEEEEeCCCceE--EEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC---CCeeEEE
Q psy8139 509 TLIIHQAALMDEGEIKCTATNRAGHSI--TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP---PPTARWL 583 (1101)
Q Consensus 509 ~l~I~~l~~~d~g~Y~C~a~n~~g~~~--~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p---~~~v~W~ 583 (1101)
.|+|..+...++|.|+=...+..+... ....|....+|.+.+.+. .+..|++..-.|.+..+- ...+.|+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~-----PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf 257 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH-----AVLEGEPFGATCVAANYYPGDRAAFRWF 257 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-----ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 699999999999999988777665433 345566666887766554 566799999999998653 4579999
Q ss_pred ECCeecCC
Q psy8139 584 HNGEPLTS 591 (1101)
Q Consensus 584 ~~g~~l~~ 591 (1101)
.||.++..
T Consensus 258 ~ng~~V~~ 265 (466)
T PHA03270 258 EGGDEVFA 265 (466)
T ss_pred eCCccccC
Confidence 99998853
No 397
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=89.50 E-value=0.63 Score=37.35 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=35.7
Q ss_pred CCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEe
Q psy8139 467 DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529 (1101)
Q Consensus 467 g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n 529 (1101)
...|.|.|... -.|.|++ |..+.... ..++.+..+..+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 45688999652 3699999 55443211 23788888888999999998876
No 398
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=88.73 E-value=1.2 Score=40.42 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=49.1
Q ss_pred CCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCc-cccccceEEEcCcc--CCccEEEEEEEEecCCC
Q psy8139 360 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP-HMVEDTELMVSGLE--PGWRYQFRITAENVVGF 431 (1101)
Q Consensus 360 ~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~-~~~~~~~l~i~~L~--p~d~y~y~c~A~n~~G~ 431 (1101)
...-...|+|+++. +..+-..|.|+++..+...|..+.. .........+++.. +...|..+|+|..+...
T Consensus 32 s~nf~~iL~W~~~~--~~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~~~~~ 104 (107)
T PF01108_consen 32 SVNFKHILRWDPGP--GSPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRAEVGNQT 104 (107)
T ss_dssp EETTEEEEEEEEST--TSSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEEEETTEE
T ss_pred EECCceEEEeCCCC--CCCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEEEeCCcc
Confidence 34566899999963 3335678999999777778987621 22344677777755 67889999999875443
No 399
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=88.70 E-value=1.6 Score=38.57 Aligned_cols=64 Identities=13% Similarity=0.180 Sum_probs=36.6
Q ss_pred ccCCeEEEEEEEecc-CC-CeEEEEECCEEeecCCcEE-EEecCCeeEEEEe---ecCCC-CCEEEEEEEEeC
Q psy8139 465 LEDEKVEFTVQVEGI-PT-PKVSWYKDGFEIFSSRRQR-IVTDNDISTLIIH---QAALM-DEGEIKCTATNR 530 (1101)
Q Consensus 465 ~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~~~~~~~~~-~~~~~~~~~l~I~---~l~~~-d~g~Y~C~a~n~ 530 (1101)
..+..++|.|.+.|. |. ..++|.++|..+..+.... ...+++ ++.+. .+.++ ....|+|.+...
T Consensus 14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d--ty~~~S~L~vt~~~~~~~ysC~V~H~ 84 (96)
T cd07697 14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND--VYSTTSWLTVTKDSLGKKFRCIYKHE 84 (96)
T ss_pred ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC--EEEEEEEEEECchhCCCeEEEEEEEC
Confidence 345678999999883 43 3689999998865432111 122222 22221 22333 233599998764
No 400
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=88.49 E-value=2.5 Score=37.31 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=22.3
Q ss_pred EccCCeEEEEEEEecc--CC-CeEEEEECCE
Q psy8139 464 ALEDEKVEFTVQVEGI--PT-PKVSWYKDGF 491 (1101)
Q Consensus 464 v~~g~~v~L~C~~~g~--p~-~~v~W~~~g~ 491 (1101)
+..|..++|.|.+.|. |. ..++|.+++.
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 4568889999999988 43 3689999874
No 401
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=88.43 E-value=4 Score=35.89 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=24.7
Q ss_pred eCCEEEEEEEEeec-C-CCeeEEEECCeecCCC
Q psy8139 562 MGEIIKLKVSMAGM-P-PPTARWLHNGEPLTSG 592 (1101)
Q Consensus 562 ~g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~ 592 (1101)
.|...+|.|.+.|. | ...++|.++|..+..+
T Consensus 13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~ 45 (94)
T cd05766 13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG 45 (94)
T ss_pred CCCCeEEEEEEeeecCCCCEEEEEECCeecCCC
Confidence 46778999999985 4 4589999999987653
No 402
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=88.26 E-value=0.42 Score=52.74 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=10.1
Q ss_pred cccccccCCCCCCCccccccCcC
Q psy8139 1006 SSEMSEASNITDDEDEEDEEDSF 1028 (1101)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1101)
.++++|+..-+.||||+|+++..
T Consensus 42 geEaEEEA~~EEdededd~~d~D 64 (458)
T PF10446_consen 42 GEEAEEEAEEEEDEDEDDEDDDD 64 (458)
T ss_pred hHHHHHHHhhccccccccccccc
Confidence 33444444444444444444333
No 403
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=88.26 E-value=2 Score=37.82 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=37.0
Q ss_pred eEEEEEEE-eccCCCeEEEEECCEEeecCCcEEEEecCC---eeEEEEeecCCCCCEEEEEEEEeCCCce
Q psy8139 469 KVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDND---ISTLIIHQAALMDEGEIKCTATNRAGHS 534 (1101)
Q Consensus 469 ~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~---~~~l~I~~l~~~d~g~Y~C~a~n~~g~~ 534 (1101)
...+.|.+ .|.|.+.|+|+++...... .......++. .+.|.+......+.-.|+|.+.+..-..
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~ 85 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQE 85 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 46789966 5889999999987211100 0001111121 2245554444456668999999876433
No 404
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=88.19 E-value=2.6 Score=37.59 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=38.1
Q ss_pred CCEEEEEEEEeec-C-CCeeEEEECCeecCCCCce-EEEe--ecc---eEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139 563 GEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGRY-EITH--TDR---YLNLRISDARRADRGEYQAHGVNSL 627 (1101)
Q Consensus 563 g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~~-~~~~--~~~---~~sl~i~~l~~~~~y~y~c~A~N~~ 627 (1101)
++.++|.|.+.|. | ...|.|.++|..+..+... .... ++. .+.|.+..-...+...|+|.+....
T Consensus 17 ~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 17 SGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred CCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 5668999999984 4 5789999999987532111 0111 111 2233333322234678999887643
No 405
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=88.15 E-value=2.7 Score=35.98 Aligned_cols=64 Identities=23% Similarity=0.373 Sum_probs=41.2
Q ss_pred CCEEEEEEEEeec-C-CCeeEEEECCeecCCCCceEEEe--ecc----eEEEEEccCCCCCCeEEEEEEEeCCCC
Q psy8139 563 GEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGRYEITH--TDR----YLNLRISDARRADRGEYQAHGVNSLGE 629 (1101)
Q Consensus 563 g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~~~~~~--~~~----~~sl~i~~l~~~~~y~y~c~A~N~~G~ 629 (1101)
+..+.|.|.+.+. | ...|.|.++|..+..+....... .++ .+.+.+. ......|+|.+......
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 7889999999985 4 45899999999876543222111 111 2234444 55666899998766443
No 406
>KOG4597|consensus
Probab=88.00 E-value=0.91 Score=50.34 Aligned_cols=120 Identities=14% Similarity=0.067 Sum_probs=77.0
Q ss_pred EEEEEEEecCCCCCCCCCCcceEEEeccCCCCC--CeeeecCceeEEccCCeEEEEEEEeccCCCeEEEEE---CCEEee
Q psy8139 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA--PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK---DGFEIF 494 (1101)
Q Consensus 420 ~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~--P~~~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~---~g~~~~ 494 (1101)
.++|.-....+...++.. ..+..+.|..+ |.+...|....+..|++.+++|.+.|.+.+.|+|.+ ++..+.
T Consensus 166 iv~C~~~~t~~~~~~~~c----ettm~ptpe~e~~c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv 241 (560)
T KOG4597|consen 166 IVYCIHGKTWPRVSPDPC----ETTMAPTPEFEPSCALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVV 241 (560)
T ss_pred eEEEeccccCCCCCCCcc----ccccCCCCCCCCCcccccCcchhhcccchhhcccccccCCcCceeeeehhhcccccee
Confidence 456665555554443322 12222222222 455666777788999999999999999999999986 332222
Q ss_pred c--CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeec
Q psy8139 495 S--SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543 (1101)
Q Consensus 495 ~--~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~ 543 (1101)
. ...+..........|.|-+-...|+|.|+|.+.+..|.....+.+.+.
T Consensus 242 ~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 242 MRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred ecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccceeeee
Confidence 1 111111111233478999999999999999999999988776655543
No 407
>PHA03271 envelope glycoprotein C; Provisional
Probab=87.79 E-value=32 Score=38.14 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=53.6
Q ss_pred EEEEeecCCCCCEEEEEEEEeCCCceE--EEEEEee-ccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC---CCeeEE
Q psy8139 509 TLIIHQAALMDEGEIKCTATNRAGHSI--TKARLRL-EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP---PPTARW 582 (1101)
Q Consensus 509 ~l~I~~l~~~d~g~Y~C~a~n~~g~~~--~s~~l~V-~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p---~~~v~W 582 (1101)
.+.|.++...|+|.|++...+...... ....+.+ +-||.+.+.+. .+..|++....|.+..+- ...+.|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~-----PVL~Ge~YkAtC~vAnYYPP~SvrlrW 282 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP-----PVLSGENYKASCIVRHFYPPGSVYVSW 282 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC-----ccccCCCceEEEEeeeecCCCceEEEE
Confidence 688999999999988776655433322 2233333 34665655443 466799999999998753 357999
Q ss_pred EECCeecCC
Q psy8139 583 LHNGEPLTS 591 (1101)
Q Consensus 583 ~~~g~~l~~ 591 (1101)
+.||.++..
T Consensus 283 f~nG~~V~~ 291 (490)
T PHA03271 283 RQNGNIATP 291 (490)
T ss_pred EeCCccccC
Confidence 999988754
No 408
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=87.23 E-value=4.3 Score=35.70 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=38.2
Q ss_pred CCEEEEEEEEeec-C-CCeeEEEECCeecCCCCc-e-EEEeecc----eEEEEEccCCCCCCeEEEEEEEeCCC
Q psy8139 563 GEIIKLKVSMAGM-P-PPTARWLHNGEPLTSGGR-Y-EITHTDR----YLNLRISDARRADRGEYQAHGVNSLG 628 (1101)
Q Consensus 563 g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~~~-~-~~~~~~~----~~sl~i~~l~~~~~y~y~c~A~N~~G 628 (1101)
++.++|.|.+.|. | ...|+|.++|..+..+.. . .....++ ...|.+..-...+...|+|.+.....
T Consensus 14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence 4557899999984 4 478999999988643211 1 1111111 12333332222356789999876543
No 409
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=87.17 E-value=2.3 Score=37.48 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=23.6
Q ss_pred CCEEEEEEEEeec-C-CCeeEEEECCeecCCC
Q psy8139 563 GEIIKLKVSMAGM-P-PPTARWLHNGEPLTSG 592 (1101)
Q Consensus 563 g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~ 592 (1101)
+..++|.|.+.|. | ...++|.++|..+..+
T Consensus 16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~ 47 (96)
T cd07697 16 QGQGIYLCLLENFFPDVIQVHWREGNSPSILG 47 (96)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEECCEECcCC
Confidence 4568899999984 4 5688999999887543
No 410
>KOG0942|consensus
Probab=87.12 E-value=0.69 Score=55.49 Aligned_cols=18 Identities=17% Similarity=0.615 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhHHHHHH
Q psy8139 40 SKTIVIQKYFRGYLLMRK 57 (1101)
Q Consensus 40 ~aa~~IQ~~~Rg~~~r~~ 57 (1101)
++|+.+|+.||||.+|++
T Consensus 30 ~~av~vQs~~Rg~~~r~~ 47 (1001)
T KOG0942|consen 30 KNAVKVQSFWRGFRVRHN 47 (1001)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 455555555555554443
No 411
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=87.10 E-value=0.79 Score=53.93 Aligned_cols=232 Identities=18% Similarity=0.155 Sum_probs=18.6
Q ss_pred cceEEEcC--ccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEEeccC--
Q psy8139 405 DTELMVSG--LEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIP-- 480 (1101)
Q Consensus 405 ~~~l~i~~--L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~~g~p-- 480 (1101)
...|.|.. |.++ .|.|.+.+.-..+... ..+..+++.+...+. .+.+.. .....+..++.+.|.....-+|
T Consensus 37 ~~~l~ip~~~L~~G-~y~~~~~Vt~~~~~~~--~~~~~~~v~V~~s~l-~~~I~g-G~~~~~~~~~~i~ldgs~S~Dpd~ 111 (440)
T PF02010_consen 37 TPQLTIPPYTLPPG-DYTFTLTVTASSNPGL--SSTDSVTVTVEPSPL-VAVIKG-GSSRTVGYNSDITLDGSQSYDPDG 111 (440)
T ss_dssp SSECEEECES--SC-EEEEEEEEE--BCTTE--EEEEEEEEEEE------------------------------------
T ss_pred ceEEEeCcccCCCC-CEEEEEEEEEECCCCc--eEEEEEEEEEeeccc-eeEEcC-CccceeecCceEEEeeEEEecccc
Confidence 35677766 4455 6777777762111111 123445555543222 222221 2222333344566655333233
Q ss_pred -----CCeEEEEECCEEeecCC----cEEEEecCCeeEEEE--eecCCCCCEEEEEEEEeCCC-ceEEEEEEeecc--CC
Q psy8139 481 -----TPKVSWYKDGFEIFSSR----RQRIVTDNDISTLII--HQAALMDEGEIKCTATNRAG-HSITKARLRLEA--PP 546 (1101)
Q Consensus 481 -----~~~v~W~~~g~~~~~~~----~~~~~~~~~~~~l~I--~~l~~~d~g~Y~C~a~n~~g-~~~~s~~l~V~~--~p 546 (1101)
...+.|.-......... ............++| ..+.++..|.+++.+....+ .......+.+.. +|
T Consensus 112 ~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p 191 (440)
T PF02010_consen 112 PPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPP 191 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCC
Confidence 23567875433221000 000111122235555 45666666777777766554 223333344432 33
Q ss_pred ccccCCCCCCCeEEeeCCEEEEEEEEee----cCCCeeEEEEC--------CeecCCCCceEEEeecceEEEEEc--cCC
Q psy8139 547 TIRLPKQYEDGLLFEMGEIIKLKVSMAG----MPPPTARWLHN--------GEPLTSGGRYEITHTDRYLNLRIS--DAR 612 (1101)
Q Consensus 547 ~~~~~~~~~~~~~v~~g~~~~l~c~~~g----~p~~~v~W~~~--------g~~l~~~~~~~~~~~~~~~sl~i~--~l~ 612 (1101)
.+...........+..++.+.|.....+ .....+.|... ...+.... ...........|.|. .|.
T Consensus 192 ~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Lvi~~~~l~ 270 (440)
T PF02010_consen 192 TVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWS-SMTTTGSSSSNLVIDPGVLE 270 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccc-cccccccccccccccccccc
Confidence 3333222211223566666666544443 23567888760 01110000 001111123345554 578
Q ss_pred CCCCeEEEEEEEeCCCCc-eeEEEEEEecCC
Q psy8139 613 RADRGEYQAHGVNSLGED-VASFLVTVTDRP 642 (1101)
Q Consensus 613 ~~~~y~y~c~A~N~~G~~-~~s~~l~v~~~P 642 (1101)
++..|.+++.+.+..|.. .....+.+..+|
T Consensus 271 ~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~pP 301 (440)
T PF02010_consen 271 PGSTYTFRLTVTDSSGSSGSASISFTVNAPP 301 (440)
T ss_dssp -------------------------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 888999999998887664 445555554444
No 412
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=86.88 E-value=2.8 Score=50.05 Aligned_cols=40 Identities=13% Similarity=-0.042 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy8139 160 MKQKASVIQQWYRNTKLMRLEA--SYLHELKAATITIQRRYR 199 (1101)
Q Consensus 160 ~~~aa~~IQ~~~R~~~~rr~~~--~~~~~~~~aa~~iQ~~~R 199 (1101)
....++++|...||+..|++.. ...-..+..+...|..+|
T Consensus 405 ~llni~klq~L~nG~~iRkl~~l~~s~~~~hlsv~~~q~L~R 446 (1054)
T COG5261 405 ALLNIVKLQILGNGYEIRKLYSLGKSNCEEHLSVSLFQMLLR 446 (1054)
T ss_pred HHHHHHHHHHhhcceeeeeeecccccchhHHHHHHHHHHHHH
Confidence 3446789999999998884321 000123445555555555
No 413
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=86.70 E-value=3.4 Score=37.87 Aligned_cols=69 Identities=19% Similarity=0.349 Sum_probs=39.5
Q ss_pred EccCCeEEEEEEEecc-CC-CeEEEEECCEEeecCCcE--EEEecCCeeEEEEe---ecCCC---C-CEEEEEEEEeCCC
Q psy8139 464 ALEDEKVEFTVQVEGI-PT-PKVSWYKDGFEIFSSRRQ--RIVTDNDISTLIIH---QAALM---D-EGEIKCTATNRAG 532 (1101)
Q Consensus 464 v~~g~~v~L~C~~~g~-p~-~~v~W~~~g~~~~~~~~~--~~~~~~~~~~l~I~---~l~~~---d-~g~Y~C~a~n~~g 532 (1101)
+..+..++|.|.+.|. |. ..|+|.+||..+...... .....++ .++.+. .+.+. + ...|+|.+.....
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~-gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~ 93 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENT-STYSISSRLRVSATEWFNPRNTFTCIVQFYGG 93 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCC-CeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence 3356778999999884 44 479999999887543211 1111211 122221 22232 2 4579999887644
Q ss_pred c
Q psy8139 533 H 533 (1101)
Q Consensus 533 ~ 533 (1101)
.
T Consensus 94 ~ 94 (115)
T cd05769 94 T 94 (115)
T ss_pred c
Confidence 3
No 414
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=86.22 E-value=3.1 Score=38.59 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=43.8
Q ss_pred EEccCCeEEEEEEEec-----cCCCeEEEEECCEEeec--CCcEEE-Eec----------CCeeEEEEeecCCCCCEEEE
Q psy8139 463 TALEDEKVEFTVQVEG-----IPTPKVSWYKDGFEIFS--SRRQRI-VTD----------NDISTLIIHQAALMDEGEIK 524 (1101)
Q Consensus 463 ~v~~g~~v~L~C~~~g-----~p~~~v~W~~~g~~~~~--~~~~~~-~~~----------~~~~~l~I~~l~~~d~g~Y~ 524 (1101)
...-++++.|+|.+.. .+...|.|..+|..+.. +..... ... .|..+|.+.....- .|.|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 3467889999999865 23346999999886642 111111 000 12234555553333 89999
Q ss_pred EEEEeCCCceEEEEEEee
Q psy8139 525 CTATNRAGHSITKARLRL 542 (1101)
Q Consensus 525 C~a~n~~g~~~~s~~l~V 542 (1101)
|.+............|..
T Consensus 102 CeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 102 CEVTELSREGETTIELKY 119 (130)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEecCCCceEEEEEEE
Confidence 999988776666665555
No 415
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=86.07 E-value=0.53 Score=47.59 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=5.3
Q ss_pred EEEEEEcCCcc
Q psy8139 760 FRITAENVVGF 770 (1101)
Q Consensus 760 ~~V~A~n~~G~ 770 (1101)
|.+...|..|.
T Consensus 172 ~KC~SCNrlGq 182 (314)
T PF06524_consen 172 FKCQSCNRLGQ 182 (314)
T ss_pred ccccccccccc
Confidence 34555555553
No 416
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=85.99 E-value=2.6 Score=37.74 Aligned_cols=29 Identities=31% Similarity=0.634 Sum_probs=23.5
Q ss_pred CCEEEEEEEEeecC--CCeeEEEECCeecCC
Q psy8139 563 GEIIKLKVSMAGMP--PPTARWLHNGEPLTS 591 (1101)
Q Consensus 563 g~~~~l~c~~~g~p--~~~v~W~~~g~~l~~ 591 (1101)
+..++|.|.+.|.- ...++|.++|.++..
T Consensus 16 ~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~ 46 (102)
T cd05768 16 QETATLTCLVKGFSPSDIFVKWLQNGQPLSK 46 (102)
T ss_pred CCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence 66799999999854 357899999988754
No 417
>PHA03273 envelope glycoprotein C; Provisional
Probab=85.47 E-value=35 Score=38.57 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=57.9
Q ss_pred EEEEeecCCCCCEEEEEEEEeCCCceEEEE--EEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC---CCeeEEE
Q psy8139 509 TLIIHQAALMDEGEIKCTATNRAGHSITKA--RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP---PPTARWL 583 (1101)
Q Consensus 509 ~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~--~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p---~~~v~W~ 583 (1101)
.|+|..+...++|.|+=...+..|...... .+....+|.+.+.+. .+..|++....|.+..+- ...+.|+
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~-----PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH-----PSLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC-----ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 599999999999999866555555444434 444466787766554 567799999999998653 4589999
Q ss_pred ECCeecC
Q psy8139 584 HNGEPLT 590 (1101)
Q Consensus 584 ~~g~~l~ 590 (1101)
.||.++.
T Consensus 274 ~dg~~V~ 280 (486)
T PHA03273 274 KNAKEVD 280 (486)
T ss_pred eCCeecc
Confidence 9999987
No 418
>KOG3632|consensus
Probab=85.18 E-value=1.2 Score=53.59 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=60.0
Q ss_pred CCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcC-Ccc-----C
Q psy8139 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV-VGF-----S 771 (1101)
Q Consensus 698 ~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~-~G~-----g 771 (1101)
+++.++..|+|-+-. .+- -.+.|-..... .........+++-+|.|++.|.++|-|.-. .+. -
T Consensus 682 n~tqtSa~itwvp~n-sn~-----~Hviyln~eE~-----~ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v 750 (1335)
T KOG3632|consen 682 NATQTSAMITWVPFN-SNF-----LHVIYLNAEEP-----RPSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMV 750 (1335)
T ss_pred hhhchhhheeeeecC-CCc-----ceeeecCCccC-----CCchhhhhHHHHhccCCCCccceecccccCcCCCcccccc
Confidence 678899999998631 110 11122221111 111134456789999999999999988655 221 1
Q ss_pred CC---CCCCCcEEecCCCCCCCCCcccc---cccccceeccccCCCC
Q psy8139 772 EP---GPLSEPLTVTYQRSPAAAPSFIR---ALHDTTALEDEKPRNT 812 (1101)
Q Consensus 772 ~~---S~~s~~~t~~~~~~P~~~p~~~~---~~~~s~~~~~w~p~~~ 812 (1101)
++ .....+.|+ ...|++||..+. -.+.+.+.+.|.|+..
T Consensus 751 ~~etr~atv~f~tL--pAGppappldV~vE~g~spg~l~vswrPptl 795 (1335)
T KOG3632|consen 751 PMETRQATVLFRTL--PAGPPAPPLDVKVETGGSPGRLEVSWRPPTL 795 (1335)
T ss_pred hhhhhccceeeecc--cCCCCCCchheeeecCCCCceeeeeccCcee
Confidence 11 122223333 478888888876 4455677789988655
No 419
>PHA02982 hypothetical protein; Provisional
Probab=85.06 E-value=6 Score=39.22 Aligned_cols=106 Identities=10% Similarity=0.148 Sum_probs=67.3
Q ss_pred EEeeCCEEEEEEEEee-cCCCeeEEEECC-eecC------------------CCCceEEEeecceEEEEEccCCCCCCeE
Q psy8139 559 LFEMGEIIKLKVSMAG-MPPPTARWLHNG-EPLT------------------SGGRYEITHTDRYLNLRISDARRADRGE 618 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g-~p~~~v~W~~~g-~~l~------------------~~~~~~~~~~~~~~sl~i~~l~~~~~y~ 618 (1101)
....++++.|.|.... +.-....|..+. ..+. ....+.++.++..++|+|..+.+...|.
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 4455888899997432 234467787532 1111 0124566778889999999999999999
Q ss_pred EEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEE
Q psy8139 619 YQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY 680 (1101)
Q Consensus 619 y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~ 680 (1101)
|+|.|....|...... ....+..+.|.+.|.. .++-..|+-|...+
T Consensus 115 Ytc~~ks~~~k~E~c~--------------kCl~V~~~~V~~~W~e--~nNeT~V~CyVgS~ 160 (251)
T PHA02982 115 FTCEAKDAEGKEETCE--------------KCLEIQKEDILYVVEE--HNNETIITCFVGSK 160 (251)
T ss_pred eEEEEecCCCchheeh--------------eeeeEecceEEEEEEe--cCCeEEEEEEEEec
Confidence 9999988766543311 1223335677888883 44444555555444
No 420
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=85.05 E-value=0.44 Score=60.29 Aligned_cols=36 Identities=33% Similarity=0.396 Sum_probs=18.6
Q ss_pred cccccccccCCCCCCCccccccCcCccccccccCCC
Q psy8139 1004 QYSSEMSEASNITDDEDEEDEEDSFDFDELFEDNPE 1039 (1101)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1101)
.-++.||-..|---|.|+||||+..|.+|++|+++|
T Consensus 140 l~eed~~~~~~~~~d~~~~~~~~~~~~~~~~~e~~~ 175 (2849)
T PTZ00415 140 LAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEE 175 (2849)
T ss_pred cchhhcCcccccccCCcccccccccccccccccccc
Confidence 346667777666555555544444444444443333
No 421
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=84.77 E-value=3.3 Score=33.35 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=35.4
Q ss_pred CCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEe
Q psy8139 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625 (1101)
Q Consensus 563 g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N 625 (1101)
.+.+.|.|.. .-+|.|.+ |..+.... +.++.+......-.|.|.|.+++
T Consensus 6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence 4568899965 24599999 54443211 45677888888889999999877
No 422
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=84.71 E-value=3.3 Score=36.66 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=22.7
Q ss_pred EccCCeEEEEEEEeccC---CCeEEEEECCEE
Q psy8139 464 ALEDEKVEFTVQVEGIP---TPKVSWYKDGFE 492 (1101)
Q Consensus 464 v~~g~~v~L~C~~~g~p---~~~v~W~~~g~~ 492 (1101)
...+..++|.|.+.+.- ...|+|.++|..
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 44678899999998843 347999999875
No 423
>KOG1832|consensus
Probab=84.64 E-value=0.57 Score=55.58 Aligned_cols=6 Identities=17% Similarity=1.049 Sum_probs=2.8
Q ss_pred HHHHHH
Q psy8139 285 SLWKMY 290 (1101)
Q Consensus 285 s~~r~~ 290 (1101)
..||-+
T Consensus 614 ~~w~~~ 619 (1516)
T KOG1832|consen 614 PVWRYL 619 (1516)
T ss_pred cccccc
Confidence 345444
No 424
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=84.46 E-value=7 Score=34.52 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=22.2
Q ss_pred EeeCCEEEEEEEEeec--C-CCeeEEEECCe
Q psy8139 560 FEMGEIIKLKVSMAGM--P-PPTARWLHNGE 587 (1101)
Q Consensus 560 v~~g~~~~l~c~~~g~--p-~~~v~W~~~g~ 587 (1101)
+..|..++|.|.+.|. | ...++|.+++.
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 3447788999999998 3 46889999874
No 425
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.43 E-value=0.67 Score=48.79 Aligned_cols=32 Identities=34% Similarity=0.476 Sum_probs=18.7
Q ss_pred cccCCCCCCCccccccCcCccccccccCCCcc
Q psy8139 1010 SEASNITDDEDEEDEEDSFDFDELFEDNPEEE 1041 (1101)
Q Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1101)
.|.++-++++.++++|+.+++|.||+|.+++|
T Consensus 36 ~Eee~D~ef~~~~~eed~~~~Dsdf~~se~de 67 (240)
T PF05764_consen 36 QEEEDDEEFESEEEEEDEEEDDSDFDDSEDDE 67 (240)
T ss_pred cccCCCccccCCCccccccccccccCccccCC
Confidence 44455566666666666665566666665543
No 426
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=84.38 E-value=4.9 Score=35.28 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=38.6
Q ss_pred EccCCeEEEEEEEecc-CC--CeEEEEECCEEeecCCcEEE----EecCCeeEEEEeecCCCCCE-EEEEEEEeC
Q psy8139 464 ALEDEKVEFTVQVEGI-PT--PKVSWYKDGFEIFSSRRQRI----VTDNDISTLIIHQAALMDEG-EIKCTATNR 530 (1101)
Q Consensus 464 v~~g~~v~L~C~~~g~-p~--~~v~W~~~g~~~~~~~~~~~----~~~~~~~~l~I~~l~~~d~g-~Y~C~a~n~ 530 (1101)
+.+|..+++.|.+.+. |. ..+.|++....+........ ........+++.-. .+|.| .|.|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 4789999999998653 43 46899876555443221110 00111234555543 55555 899998744
No 427
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=84.09 E-value=7.8 Score=34.14 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=38.6
Q ss_pred EEEEEEEEe-ecCCCeeEEEECCeecCCCCceEEEeecc---eEEEEEccCCCCCCeEEEEEEEeCCCCc
Q psy8139 565 IIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDR---YLNLRISDARRADRGEYQAHGVNSLGED 630 (1101)
Q Consensus 565 ~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~sl~i~~l~~~~~y~y~c~A~N~~G~~ 630 (1101)
...+.|.+. |.|.+.|+|+++...... ........+. .+.|.+......+.-.|+|.+.|..-..
T Consensus 17 ~~va~C~s~~gkP~a~ItW~~~~~~~~~-~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 17 VTVATCVSANGKPPATISWETTLGGEAE-TQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred cEEEEEECCCCcCCCEEEEEeCCCCcce-eEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 456889884 789999999987211100 0000011111 3456665555566788999999876543
No 428
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=84.03 E-value=6.2 Score=34.78 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=21.3
Q ss_pred cCCeEEEEEEEeccCC--CeEEEEECCEE
Q psy8139 466 EDEKVEFTVQVEGIPT--PKVSWYKDGFE 492 (1101)
Q Consensus 466 ~g~~v~L~C~~~g~p~--~~v~W~~~g~~ 492 (1101)
.+..++|.|.+.|.-+ ..|+|.++|..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 4566899999988433 46899999987
No 429
>PHA03269 envelope glycoprotein C; Provisional
Probab=83.94 E-value=27 Score=39.53 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=57.7
Q ss_pred eEEEEeecCCCCCEEEEEEEEeCC-Cc--eEEEEEEeeccCCccccCCCCCCCeEEeeCCEEEEEEEEeecC---CCeeE
Q psy8139 508 STLIIHQAALMDEGEIKCTATNRA-GH--SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMP---PPTAR 581 (1101)
Q Consensus 508 ~~l~I~~l~~~d~g~Y~C~a~n~~-g~--~~~s~~l~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p---~~~v~ 581 (1101)
-.|+|.++...++|.|.=...+.. +. ......+.+..+|.+.+.+. .+..|++..-.|.+..+- +..+.
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~-----PVL~Ge~YkAtC~vA~YYPp~Svrlr 363 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD-----PVLLGNPYAAYCKVNKYYPPHSVIVK 363 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC-----ccccCCCceEEEEeeeecCCCceEEE
Confidence 369999999999999975544322 22 23445666667887766554 567799999999998653 45899
Q ss_pred EEECCeecCC
Q psy8139 582 WLHNGEPLTS 591 (1101)
Q Consensus 582 W~~~g~~l~~ 591 (1101)
|+.||.++..
T Consensus 364 Wf~ng~~V~~ 373 (566)
T PHA03269 364 WTSNFGNIGK 373 (566)
T ss_pred EEeCCcccCc
Confidence 9999988874
No 430
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=82.51 E-value=9.3 Score=34.24 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=34.8
Q ss_pred ceEEEEEEeCCCCCceeecccc-cCccE-----EEEc--CCCCCceEEEEEEEEcCCcc
Q psy8139 720 LGYLVEHRRTGSPYWVRASPHM-VEDTE-----LMVS--GLEPGWRYQFRITAENVVGF 770 (1101)
Q Consensus 720 ~~Y~V~~~~~~~~~~~~~~~~~-~~~~~-----~~i~--~L~p~t~Y~~~V~A~n~~G~ 770 (1101)
+.|.+.|...+ ..|....... ...++ ..+. +..-++.|.++|.|.|..|.
T Consensus 38 ~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 38 TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYCIQVEATNALGS 95 (104)
T ss_dssp CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEEEEEEEEETTEE
T ss_pred CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEEEEEEeccCCCc
Confidence 34888888877 5676654321 22233 4454 78889999999999999985
No 431
>KOG4427|consensus
Probab=82.16 E-value=12 Score=44.34 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=12.2
Q ss_pred CceEEEEEEEEcCCccC
Q psy8139 755 GWRYQFRITAENVVGFS 771 (1101)
Q Consensus 755 ~t~Y~~~V~A~n~~G~g 771 (1101)
.-...++|.-+|..|--
T Consensus 736 alKs~IrVkFVNeqGl~ 752 (1096)
T KOG4427|consen 736 ALKSVIRVKFVNEQGLD 752 (1096)
T ss_pred hhhceEEEEEecccCCc
Confidence 44567888888887753
No 432
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=81.35 E-value=8.6 Score=33.84 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=40.2
Q ss_pred EEEEEEEEe-ecCCCeeEEEECCeecCCCCceEEEeecc---eEEEEEccCCCCCCeEEEEEEEeCCCCceeE
Q psy8139 565 IIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDR---YLNLRISDARRADRGEYQAHGVNSLGEDVAS 633 (1101)
Q Consensus 565 ~~~l~c~~~-g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s 633 (1101)
...+.|.+. |.|.+.|+|+.+...... .......++. .+.|.+......+.-.|+|.|.|..-.....
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~ 88 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQL 88 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 466899776 778999999987211110 0111111111 3456665555567788999999976544443
No 433
>PHA02633 hypothetical protein; Provisional
Probab=80.83 E-value=4.1 Score=32.00 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=30.9
Q ss_pred EEEEeecCCCCCEEEEEEEEeCCCceEEEEEEeeccCC
Q psy8139 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546 (1101)
Q Consensus 509 ~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p 546 (1101)
.|-|-+...+|+|.|.|...|..-....+..|.|...+
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 78888999999999999999877666667777776543
No 434
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=80.19 E-value=9.3 Score=34.69 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=43.5
Q ss_pred eEEeeCCEEEEEEEEeecCC---CeeEEEE--CCeecC--------------CCCceE--EEeecceEEEEEccCCCCCC
Q psy8139 558 LLFEMGEIIKLKVSMAGMPP---PTARWLH--NGEPLT--------------SGGRYE--ITHTDRYLNLRISDARRADR 616 (1101)
Q Consensus 558 ~~v~~g~~~~l~c~~~g~p~---~~v~W~~--~g~~l~--------------~~~~~~--~~~~~~~~sl~i~~l~~~~~ 616 (1101)
..+.+|..++|.|...|... ..++|.+ +| .+. ...++. ...+.+.-+|.+.+|+..|.
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT 86 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT 86 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence 36677888999999977542 4688876 23 110 112222 22334466899999999999
Q ss_pred eEEEEEE
Q psy8139 617 GEYQAHG 623 (1101)
Q Consensus 617 y~y~c~A 623 (1101)
..|.|.-
T Consensus 87 a~Y~Ca~ 93 (115)
T cd05721 87 DIYFCKI 93 (115)
T ss_pred eEEEEEe
Confidence 9999965
No 435
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=80.01 E-value=0.56 Score=57.06 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=0.0
Q ss_pred cCCccEEEEEEEEecCC
Q psy8139 414 EPGWRYQFRITAENVVG 430 (1101)
Q Consensus 414 ~p~d~y~y~c~A~n~~G 430 (1101)
.+|..+.|++.+....|
T Consensus 185 ~~G~~~~~~l~~r~l~G 201 (787)
T PF03115_consen 185 PVGRPAVFKLTARDLAG 201 (787)
T ss_dssp -----------------
T ss_pred cCCCceEEEECHHHcCC
Confidence 34444444444444433
No 436
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=79.77 E-value=20 Score=43.47 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=42.0
Q ss_pred EEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCCCcEEecCCCCCCC
Q psy8139 722 YLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA 790 (1101)
Q Consensus 722 Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s~~~t~~~~~~P~~ 790 (1101)
+.+.|.......|..... ...+.+.+.+|.+| .|.++|+|.|..|...+-..+....+.....|+.
T Consensus 639 ~~~a~~a~~~~~~vta~r--t~~~~~~~~gi~~G-qY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp 704 (952)
T COG4733 639 AAWAYEAGWDGNWITAPR--TSAAGFDVEGIPAG-QYAIRVRAINVFEPNSPDATAYEFALNGKKVPPP 704 (952)
T ss_pred HHHHhhcccCCceEeccc--ccccceeecCcCcc-ceEEEEEEeeccCCCCCCcceeEEEecCCCCCCC
Confidence 334444444445555544 56788999999995 6999999999999754433344455543334433
No 437
>KOG4228|consensus
Probab=78.76 E-value=15 Score=45.99 Aligned_cols=141 Identities=16% Similarity=0.042 Sum_probs=89.2
Q ss_pred EEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEEEcCCCCCCCCcccCCCC
Q psy8139 618 EYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSP 697 (1101)
Q Consensus 618 ~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p~~p~~~~~~~ 697 (1101)
.|+|.+....|.+.....+.|...|..|..+.++.....++..+|..+..
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~vt~~~~~~~~~~~~~~~t------------------------------ 50 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPNVTGSTATSWVQAELLGST------------------------------ 50 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcccccccccceeehhhccCC------------------------------
Confidence 48999998888888888888887777777777777777777777775421
Q ss_pred CCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccCCCCCCC
Q psy8139 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLS 777 (1101)
Q Consensus 698 ~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~s 777 (1101)
+...|.|.++...+. ...... .....+....+.+...|.+ .++|..|.+.++.+.
T Consensus 51 --------------------~~~~y~v~~~~~~s~-~~~~~~--~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~ 105 (1087)
T KOG4228|consen 51 --------------------WPNYYQVIFKALSSG-YGYIDV--DLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPV 105 (1087)
T ss_pred --------------------ChhhhheeeeEeccC-cceeec--cceeecccCCCCCcchhhh--hhccccccccccccc
Confidence 122344444443333 222222 3334467778888888888 889999998877555
Q ss_pred CcEEecCCCCCCCCCcccc--cccccceeccccCCCCCCc
Q psy8139 778 EPLTVTYQRSPAAAPSFIR--ALHDTTALEDEKPRNTNNC 815 (1101)
Q Consensus 778 ~~~t~~~~~~P~~~p~~~~--~~~~s~~~~~w~p~~~~~~ 815 (1101)
...+.. ..+...+.... ........+.|.+....++
T Consensus 106 ~~rt~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 143 (1087)
T KOG4228|consen 106 APRTGE--QATLSLQRDVQALMLSAATAHVNWRRFSATVG 143 (1087)
T ss_pred CCcccc--ccccccccchhhhhhhhhhhccCccccccccc
Confidence 444332 44444444433 3344455667766666555
No 438
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=78.70 E-value=7.4 Score=34.87 Aligned_cols=83 Identities=25% Similarity=0.362 Sum_probs=57.4
Q ss_pred CCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCccc---ccc-----ceEEEcCccCCc
Q psy8139 346 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM---VED-----TELMVSGLEPGW 417 (1101)
Q Consensus 346 ~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~---~~~-----~~l~i~~L~p~d 417 (1101)
.+|+.|.++.|. ..+...++..|++.. +++.+ +.|.+.|...+ ..|....... ..+ ..|.-.++.-..
T Consensus 6 ~~p~~P~~~~C~-S~~~etftC~W~~g~-~~~l~-~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~ 81 (104)
T PF09067_consen 6 LPPEKPENLKCF-SREMETFTCFWEPGS-EGNLP-TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFV 81 (104)
T ss_dssp HHCCCCEEEEEE-BSSSS-EEEEEEEES-SSTST-CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSS
T ss_pred cCCCCCccCccC-CCCCCcEEEEeeCCC-CCCCC-CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEE
Confidence 368889999998 778889999999985 33333 34999998766 5666543211 122 223334788899
Q ss_pred cEEEEEEEEecCCCC
Q psy8139 418 RYQFRITAENVVGFS 432 (1101)
Q Consensus 418 ~y~y~c~A~n~~G~~ 432 (1101)
.|.++|.|.|..|..
T Consensus 82 ~y~i~V~a~~~~~~~ 96 (104)
T PF09067_consen 82 PYCIQVEATNALGSI 96 (104)
T ss_dssp EEEEEEEEEETTEEE
T ss_pred EEEEEEEeccCCCcE
Confidence 999999999988753
No 439
>KOG1832|consensus
Probab=78.11 E-value=1.5 Score=52.28 Aligned_cols=9 Identities=33% Similarity=-0.064 Sum_probs=3.5
Q ss_pred CCCCceeec
Q psy8139 978 DEPDYVIKG 986 (1101)
Q Consensus 978 ~~~~~~~~~ 986 (1101)
|...=||..
T Consensus 1371 D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1371 DSFLGVIEM 1379 (1516)
T ss_pred cceEEEEec
Confidence 333334443
No 440
>KOG3241|consensus
Probab=77.86 E-value=1.2 Score=42.10 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=13.1
Q ss_pred ccCcCccccccccCCCcccCcc
Q psy8139 1024 EEDSFDFDELFEDNPEEEYDED 1045 (1101)
Q Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~ 1045 (1101)
++|.||+|+|+||+.-+.|-+|
T Consensus 193 ~DDd~d~d~D~eD~~gD~e~~~ 214 (227)
T KOG3241|consen 193 HDDDSDPDSDEEDNVGDDEHDL 214 (227)
T ss_pred cccccCCccccccccCcccccc
Confidence 3336777777777765544433
No 441
>KOG1026|consensus
Probab=77.54 E-value=2.8 Score=50.62 Aligned_cols=163 Identities=18% Similarity=0.239 Sum_probs=96.0
Q ss_pred eeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEEEEEE
Q psy8139 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540 (1101)
Q Consensus 461 ~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~s~~l 540 (1101)
+..+..|..+++.|...+.|.|.+.|+.++............-. .. ...+ .++.|.+.|..|....++.+
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~-~~-~~~~--------~~~~c~~E~~~~~~~~~v~~ 270 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR-SE-CEVL--------ENDLCIAENAVARSNPSILL 270 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCccccccc-cc-ceee--------echhhHHHHhhhhcCceeee
Confidence 45677899999999999999999999987655443211110000 00 1111 12889999999988888777
Q ss_pred eeccCCccccCCCCCCCeEEeeCCEEEEEEEEe---ecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCe
Q psy8139 541 RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA---GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRG 617 (1101)
Q Consensus 541 ~V~~~p~~~~~~~~~~~~~v~~g~~~~l~c~~~---g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y 617 (1101)
.+..++....+...... .-.|... +.+.+...|..++..+...+.......+...-+.....+-.+.+
T Consensus 271 ~~~~p~~~~~~~~~~~~---------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~ 341 (774)
T KOG1026|consen 271 VVDLPKAEVLLCSPLSD---------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNG 341 (774)
T ss_pred EEecccccccCCCCccc---------cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccC
Confidence 77766544333221110 2234333 45677888888776654322222222221011222222445689
Q ss_pred EEEEEEEeCCCCceeEEEEEEecCC
Q psy8139 618 EYQAHGVNSLGEDVASFLVTVTDRP 642 (1101)
Q Consensus 618 ~y~c~A~N~~G~~~~s~~l~v~~~P 642 (1101)
.|+|.+.|..|.........+...|
T Consensus 342 ~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 342 NYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred cceeeecccCccccccCcCccccCC
Confidence 9999999999977665555555544
No 442
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=77.45 E-value=13 Score=32.29 Aligned_cols=66 Identities=11% Similarity=0.239 Sum_probs=43.1
Q ss_pred CceeEEccCCeEEEEEEEec-----cCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEE
Q psy8139 459 LHDTTALEDEKVEFTVQVEG-----IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCT 526 (1101)
Q Consensus 459 p~~~~v~~g~~v~L~C~~~g-----~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~ 526 (1101)
|....+..|++++..|.... .....|.|..++..+. ...+... +.+.+..++.++.....-.|.|.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP-~~qy~~i-n~~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP-GSQYRVI-NDTVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST-CGCEEEE-STTEEEEEESS--SSEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC-hhHccee-CCeEEEEEEccCCCCCceEEEEE
Confidence 44556889999999998753 2445799999988554 4445544 34457889988887766666665
No 443
>KOG0377|consensus
Probab=76.88 E-value=3.2 Score=45.64 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q psy8139 40 SKTIVIQKYFRGYLLMRKER 59 (1101)
Q Consensus 40 ~aa~~IQ~~~Rg~~~r~~~r 59 (1101)
+||+.||+|||+|.||..+|
T Consensus 18 kaAilIQkWYRr~~ARle~r 37 (631)
T KOG0377|consen 18 KAAILIQKWYRRYEARLEAR 37 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444333
No 444
>KOG0942|consensus
Probab=76.77 E-value=88 Score=38.61 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 58 ERQEYLAMKSSAVKIQEWYRNLQCMRQARQQY 89 (1101)
Q Consensus 58 ~r~~~~~~~~aa~~iQ~~~R~~~~r~~~~~~~ 89 (1101)
-|.+-++..++|+++|++|||+++|++.+..+
T Consensus 21 kRee~rk~e~~av~vQs~~Rg~~~r~~~~~~~ 52 (1001)
T KOG0942|consen 21 KREEERKQEKNAVKVQSFWRGFRVRHNQKLLF 52 (1001)
T ss_pred hhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 45555666689999999999999988765554
No 445
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=76.00 E-value=17 Score=33.36 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=23.6
Q ss_pred CCEEEEEEEEeec-C-CCeeEEEECCeecCCC
Q psy8139 563 GEIIKLKVSMAGM-P-PPTARWLHNGEPLTSG 592 (1101)
Q Consensus 563 g~~~~l~c~~~g~-p-~~~v~W~~~g~~l~~~ 592 (1101)
++.++|.|.+.|. | ...|+|.+||..+..+
T Consensus 18 ~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g 49 (115)
T cd05769 18 KRKATLVCLATGFYPDHVSLSWKVNGKEVTDG 49 (115)
T ss_pred CCCcEEEEEEEeEeCCCcEEEEEECCEECCCC
Confidence 5568899999985 4 3589999999887643
No 446
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=74.97 E-value=20 Score=31.62 Aligned_cols=69 Identities=13% Similarity=0.209 Sum_probs=39.7
Q ss_pred eEEccCCeEEE-EEEE-eccCCCeEEEEECCEEeecCCcEEEEecCC---eeEEEEeecCCCCCEEEEEEEEeCC
Q psy8139 462 TTALEDEKVEF-TVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDND---ISTLIIHQAALMDEGEIKCTATNRA 531 (1101)
Q Consensus 462 ~~v~~g~~v~L-~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~---~~~l~I~~l~~~d~g~Y~C~a~n~~ 531 (1101)
+.+.+|..+.+ .|.+ .|.|.+.|+|+.+...... .......++. .+.|.+......|.-.++|.+....
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 34667788887 7755 7889999999976322111 0001111111 1244554444456668999998754
No 447
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=74.68 E-value=14 Score=32.52 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=38.8
Q ss_pred EeeCCEEEEEEEEeec-CC--CeeEEEECCeecCCCCceEE----EeecceEEEEEccCCCCCCe-EEEEEEEeCC
Q psy8139 560 FEMGEIIKLKVSMAGM-PP--PTARWLHNGEPLTSGGRYEI----THTDRYLNLRISDARRADRG-EYQAHGVNSL 627 (1101)
Q Consensus 560 v~~g~~~~l~c~~~g~-p~--~~v~W~~~g~~l~~~~~~~~----~~~~~~~sl~i~~l~~~~~y-~y~c~A~N~~ 627 (1101)
...|.++++.|.+.+. |. ..+.|+++...+....-... ........+++.-. ..|.| +|+|.|.=..
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l 86 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI 86 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence 4679999999999853 43 67999886655443211000 00111234455443 44554 9999997443
No 448
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=74.63 E-value=4.4 Score=41.97 Aligned_cols=47 Identities=26% Similarity=0.377 Sum_probs=37.1
Q ss_pred CCeeEEEE-CCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeC
Q psy8139 577 PPTARWLH-NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626 (1101)
Q Consensus 577 ~~~v~W~~-~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~ 626 (1101)
.|.+.|.. +|..+.......+.. ++.|.+.+.....+|.|+|..+-.
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~---TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITE---TGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEcc---CceEEeeccccccCCceEEEEEEE
Confidence 57899985 566677666666664 667999999999999999998643
No 449
>KOG1480|consensus
Probab=74.31 E-value=0.59 Score=54.94 Aligned_cols=110 Identities=25% Similarity=0.280 Sum_probs=74.5
Q ss_pred CccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeecCceeEEccCCeEEEEEEE-eccCCCeEEEEECCEEee
Q psy8139 416 GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIF 494 (1101)
Q Consensus 416 ~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~p~~~~v~~g~~v~L~C~~-~g~p~~~v~W~~~g~~~~ 494 (1101)
-+.|.-+|.|....|..... ..++... ...-.+...|.-..|..++.+.+.|.. .+.|...+.|++++..+.
T Consensus 100 ~~d~~cQc~a~~~~g~~~s~----~a~vr~a---y~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~ 172 (909)
T KOG1480|consen 100 PEDYWCQCVAWSDDGTVKSR----KATVRIA---YLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVID 172 (909)
T ss_pred ccceeeeeeeecCCCcchhh----hHHHHHH---HHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCC
Confidence 34677888888888854322 1111111 112234455666678888888888864 678888999999998777
Q ss_pred cCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139 495 SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI 535 (1101)
Q Consensus 495 ~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~ 535 (1101)
........... .+.+..+...|.|+|+|.|.|..+...
T Consensus 173 pd~n~~~~~d~---~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 173 PDANVIRASDH---NLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred ccccchhhhcC---Cccccchhhhhcccceeeeehhhcccc
Confidence 64333333333 688999999999999999999877644
No 450
>KOG0162|consensus
Probab=74.11 E-value=11 Score=44.55 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy8139 40 SKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKI 72 (1101)
Q Consensus 40 ~aa~~IQ~~~Rg~~~r~~~r~~~~~~~~aa~~i 72 (1101)
.-|.+||++||.|+ +|++|.+++.-+..|
T Consensus 697 ~~A~~IQkAWRrfv----~rrky~k~ree~t~l 725 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFV----ARRKYEKMREEATKL 725 (1106)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 66778888888888 677777777555543
No 451
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=73.81 E-value=5.9 Score=36.78 Aligned_cols=76 Identities=9% Similarity=0.181 Sum_probs=42.5
Q ss_pred CCEEEEEEEEee-----cCCCeeEEEECCeecC--CCCceEEE-----------eecceEEEEEccCCCCCCeEEEEEEE
Q psy8139 563 GEIIKLKVSMAG-----MPPPTARWLHNGEPLT--SGGRYEIT-----------HTDRYLNLRISDARRADRGEYQAHGV 624 (1101)
Q Consensus 563 g~~~~l~c~~~g-----~p~~~v~W~~~g~~l~--~~~~~~~~-----------~~~~~~sl~i~~l~~~~~y~y~c~A~ 624 (1101)
++++.+.|.+.. .+...|.|..+|..+- .+...... ...+..+|.+...+. -.|+|+|.+.
T Consensus 27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a-~~GnYTCeVt 105 (130)
T PF08204_consen 27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDA-VEGNYTCEVT 105 (130)
T ss_dssp -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHH-H-EEEEEEEE
T ss_pred CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhc-cccceEEEEE
Confidence 677889998875 2345799999887652 11111110 011233455555332 2799999999
Q ss_pred eCCCCceeEEEEEEe
Q psy8139 625 NSLGEDVASFLVTVT 639 (1101)
Q Consensus 625 N~~G~~~~s~~l~v~ 639 (1101)
.....++....|...
T Consensus 106 ~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 106 ELSREGETTIELKYR 120 (130)
T ss_dssp ETTEEEEEEEEEEE-
T ss_pred ecCCCceEEEEEEEE
Confidence 887777777766653
No 452
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=73.69 E-value=1.4e+02 Score=36.79 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.5
Q ss_pred cCCCCCceEEEEEEEEcCCccCCC
Q psy8139 750 SGLEPGWRYQFRITAENVVGFSEP 773 (1101)
Q Consensus 750 ~~L~p~t~Y~~~V~A~n~~G~g~~ 773 (1101)
.+|.|+..|.|+++++|..|.+.+
T Consensus 762 ~~i~~g~~~~F~~R~Vn~vG~~~~ 785 (952)
T COG4733 762 VGIQAGLTFWFRNRNVDLVGNNDK 785 (952)
T ss_pred cCcCCCceEEEEeeeccccccccc
Confidence 589999999999999999998544
No 453
>PLN02533 probable purple acid phosphatase
Probab=72.55 E-value=27 Score=40.52 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=17.9
Q ss_pred CccEEEEcCCCCCceEEEEEE
Q psy8139 743 EDTELMVSGLEPGWRYQFRIT 763 (1101)
Q Consensus 743 ~~~~~~i~~L~p~t~Y~~~V~ 763 (1101)
-....+|++|.|+|.|.|+|-
T Consensus 101 ~iH~v~l~~L~p~T~Y~Yrvg 121 (427)
T PLN02533 101 QINDVVIGPLKPNTVYYYKCG 121 (427)
T ss_pred eEEEEEeCCCCCCCEEEEEEC
Confidence 345678999999999999994
No 454
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=72.22 E-value=1.8 Score=41.63 Aligned_cols=9 Identities=22% Similarity=0.172 Sum_probs=3.9
Q ss_pred CCceeecee
Q psy8139 980 PDYVIKGKY 988 (1101)
Q Consensus 980 ~~~~~~~~~ 988 (1101)
|-+-|.|.|
T Consensus 97 GPVhisG~~ 105 (149)
T PF03066_consen 97 GPVHISGQH 105 (149)
T ss_dssp S-EEEEEEE
T ss_pred CCEEeeCcc
Confidence 334455544
No 455
>KOG3871|consensus
Probab=72.05 E-value=1.2 Score=47.46 Aligned_cols=34 Identities=41% Similarity=0.494 Sum_probs=21.2
Q ss_pred ccccCcCccccccccCCCc-ccCccCCCCcccccc
Q psy8139 1022 EDEEDSFDFDELFEDNPEE-EYDEDDRDQPINFAR 1055 (1101)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 1055 (1101)
|||+|.+|+++.++|++|| |.+|=|.+.+.-|+|
T Consensus 101 ~~eddi~D~~~~~d~~~eed~~~Eide~d~~~f~r 135 (449)
T KOG3871|consen 101 EDEDDIDDFEMEEDDKEEEDEIVEIDEEDAALFER 135 (449)
T ss_pred chhcccccccccccchhhhhhhhhcCcchHHHHHH
Confidence 3455667777777776655 555555555666666
No 456
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=72.03 E-value=5.2 Score=41.50 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=36.1
Q ss_pred CCCeEEEEEC-CEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeC
Q psy8139 480 PTPKVSWYKD-GFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNR 530 (1101)
Q Consensus 480 p~~~v~W~~~-g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~ 530 (1101)
..|.+.|... |..+..+....+...| .|.+.+....++|.|+|.....
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence 4568899874 4555555555555544 7999999999999999987653
No 457
>KOG3117|consensus
Probab=70.37 E-value=3.5 Score=42.76 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=37.8
Q ss_pred ccccccCCCCCCCccccccCcCccccccccCCCcccCccCCCCccccccccccccccccccccccc-ccccccccccccc
Q psy8139 1007 SEMSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFARNRHNKYIEDDQEEIYHP-KLMTMRSSQEDLD 1085 (1101)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 1085 (1101)
.+.+-++.-.++++++.+++ +++|.||+|++|||.+..-.|.+.-.++-..|....+|-| ++...+-.|+.-+
T Consensus 136 ~~l~n~s~~~~~~~~~s~~~------~~sd~peeee~edde~~ksa~~~e~~~ee~~~~e~gkYvpPRI~aV~~d~~te~ 209 (340)
T KOG3117|consen 136 DKLSNMSLKLHYKPNLSEFA------DDSDGPEEEENEDDEDDKSAISSEDEEEELRSAEDGKYVPPRIRAVTYDEKTER 209 (340)
T ss_pred CcccccccccccCccccccc------ccccCcccccccccccccccccchhhhhhhcccccCcccCCceeeecCchhhhh
Confidence 33444455555555554433 3456677777777777766554422222222233345654 4544444444444
Q ss_pred CCC
Q psy8139 1086 EAP 1088 (1101)
Q Consensus 1086 ~~~ 1088 (1101)
|+|
T Consensus 210 er~ 212 (340)
T KOG3117|consen 210 ERP 212 (340)
T ss_pred cch
Confidence 443
No 458
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=70.35 E-value=57 Score=35.39 Aligned_cols=151 Identities=18% Similarity=0.236 Sum_probs=82.4
Q ss_pred ccCCCCCCeEEEEEEEeCCCCceeEEEEEEecCC-CCC--CccEEEEecCCeEEEEeecCCCCCCcccceeEEEE-----
Q psy8139 609 SDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP-LPP--GKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY----- 680 (1101)
Q Consensus 609 ~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P-~~P--~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~----- 680 (1101)
.++.....|.|.+.|.+..+.-+.+....-..+- .|| .++++....++.+.|+|..+...+ .|.|.-
T Consensus 129 s~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~~-----yy~IY~~~~g~ 203 (343)
T COG3401 129 SDLGHNEKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAED-----YYRIYASDSGN 203 (343)
T ss_pred cccccccceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCccccc-----eEEEeccCCcc
Confidence 3567778899999998877765554322211111 222 445555667889999999755332 444442
Q ss_pred -------------------------------EcCCC----CCCCCc--------ccCCCC--CCCCceEEEEeeCCCCCC
Q psy8139 681 -------------------------------FRPPG----PPGKPQ--------LLPDSP--SLDRDVFTIRWEPPEYDG 715 (1101)
Q Consensus 681 -------------------------------~~~~~----~p~~p~--------~~~~~~--~~~~~si~l~W~pP~~~~ 715 (1101)
..-.+ .|-.|. ..|..+ ....+.+.|.|++-....
T Consensus 204 e~~~~ia~t~~n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g~t~~~s~i~V~~E~~~~~~ 283 (343)
T COG3401 204 EEYGFIAQTTENSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPGETTEASFIGVAAEQNQLRQ 283 (343)
T ss_pred ccccceeeccccchhhhhhccCceeEEEEEEEcCCcceeccCCccccccccCCcccccCCCceeeeeeeeEEecccccce
Confidence 10001 111111 112222 123345568887632222
Q ss_pred CCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccC
Q psy8139 716 GSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFS 771 (1101)
Q Consensus 716 ~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g 771 (1101)
...|.|.--..+ ....... ...+...+..+.++..|.+.|.+.+..|.+
T Consensus 284 ---av~ytvyr~~~g--~~~~~f~--it~~d~~d~~~ltg~~~~y~v~~v~~~gls 332 (343)
T COG3401 284 ---AVTYTVYRVEDG--TPTKFFT--ITETDGQDNDMLTGVEYRYEVVAVDKAGLS 332 (343)
T ss_pred ---eeEEeeeeccCC--Ccceeee--eeeccccchhhccccceeEEEEEecccccc
Confidence 344444433332 1122222 455667788899999999999999999974
No 459
>PHA03042 CD47-like protein; Provisional
Probab=70.35 E-value=25 Score=36.80 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=42.3
Q ss_pred EccCCeEEEEEEEecc-----CCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139 464 ALEDEKVEFTVQVEGI-----PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536 (1101)
Q Consensus 464 v~~g~~v~L~C~~~g~-----p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~ 536 (1101)
..-++++.++|..+.. ....+.|..++..+...... +.++|.+.. ...-.|+|+|.|.+.......
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~ 98 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNF-SKNLSGNYTCEAINKFNKIKN 98 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEec-cccCCCceeEEEeecccCccE
Confidence 4567889999988753 34469999999876432211 223455543 334489999999876544433
No 460
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=69.59 E-value=11 Score=33.49 Aligned_cols=27 Identities=19% Similarity=0.485 Sum_probs=21.8
Q ss_pred eCCEEEEEEEEeecC---CCeeEEEECCee
Q psy8139 562 MGEIIKLKVSMAGMP---PPTARWLHNGEP 588 (1101)
Q Consensus 562 ~g~~~~l~c~~~g~p---~~~v~W~~~g~~ 588 (1101)
.+..++|.|.+.+.- ...|+|.++|..
T Consensus 18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred cCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 467789999999844 568999998865
No 461
>KOG4806|consensus
Probab=68.72 E-value=1.8e+02 Score=31.66 Aligned_cols=139 Identities=19% Similarity=0.151 Sum_probs=72.6
Q ss_pred cCCCCCCeEEEEEEEeCCCCce-----eEEEEEEecCCCCCCccEEEEec--CCeEEEEeecCCCCCCcccceeEEEEEc
Q psy8139 610 DARRADRGEYQAHGVNSLGEDV-----ASFLVTVTDRPLPPGKAKVVMTL--GKSVTLSWSEPEDDGGCKIGNYIVEYFR 682 (1101)
Q Consensus 610 ~l~~~~~y~y~c~A~N~~G~~~-----~s~~l~v~~~P~~P~~~~~~~~~--~~sv~lsW~~p~~~~g~~i~~Y~v~~~~ 682 (1101)
.+.+...|.++....|..-... .+...+....|.-|.+-++.++. =+++++.|.-..+. -..|=|..+.
T Consensus 290 vv~~~~~~~~rf~~~ndde~~~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d~----~~kyCIy~~~ 365 (454)
T KOG4806|consen 290 VVLPGERYLMRFEPSNDDEALQKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPDE----ELKYCIYVFN 365 (454)
T ss_pred EecCCCceEEEEEecCCchhhheeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccCcch----heeEEEEEec
Confidence 4566778899988887644321 12333444667888777776654 35899999854322 2456666666
Q ss_pred CCCCCCCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEE-EEeCCCCCceeecccccCccEEEEcCCCCCceEEEE
Q psy8139 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE-HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFR 761 (1101)
Q Consensus 683 ~~~~p~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~-~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 761 (1101)
++...-...... ..-.... +-....|... |....+. ...+.+-.+-+|.||.||..|.+-
T Consensus 366 ~~~~e~~v~~~~--------N~C~g~~------~~~~s~~v~c~y~hs~~~-----q~~~~~i~teTI~gL~PgssYlld 426 (454)
T KOG4806|consen 366 LPQRERSVVDFT--------NYCMGFV------PKRVSQYVYCEYMHSRER-----QQSPDNIETETILGLMPGSSYLLD 426 (454)
T ss_pred ccchhhhhhhhh--------ccccCcc------ccceeEEEeEEEecChhh-----hcchhhhhhhhhcccccCceEEEE
Confidence 543111111000 0000000 0011222222 2111100 001122244589999999999999
Q ss_pred EEEEcCCccC
Q psy8139 762 ITAENVVGFS 771 (1101)
Q Consensus 762 V~A~n~~G~g 771 (1101)
|.|.-..|..
T Consensus 427 v~a~~~~g~~ 436 (454)
T KOG4806|consen 427 VTANLSMGKP 436 (454)
T ss_pred EEEcccCCcc
Confidence 9997776653
No 462
>KOG1189|consensus
Probab=68.62 E-value=2.3 Score=50.04 Aligned_cols=43 Identities=35% Similarity=0.289 Sum_probs=22.6
Q ss_pred CCCCCCCccccccCcCccccccccCCCcccCccCCCCcccccc
Q psy8139 1013 SNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFAR 1055 (1101)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1055 (1101)
+..+++||+|.+|++.+.++++||.+++||+-.|-|+--.-|+
T Consensus 899 v~~eS~ed~e~sE~s~~de~~de~~~sdEE~gkdwdele~ea~ 941 (960)
T KOG1189|consen 899 VSDESDEDEEESEESEEDEEDDEDLESDEESGKDWDELEREAR 941 (960)
T ss_pred ccccccccccccccccccccccccccchhhhccchhhhHHHHh
Confidence 3334445555555555555555655555555555554444444
No 463
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=68.08 E-value=1.7 Score=53.07 Aligned_cols=8 Identities=25% Similarity=0.331 Sum_probs=0.0
Q ss_pred eEEEEEEE
Q psy8139 617 GEYQAHGV 624 (1101)
Q Consensus 617 y~y~c~A~ 624 (1101)
..|.|.++
T Consensus 365 ~~~~vY~S 372 (787)
T PF03115_consen 365 DTYQVYAS 372 (787)
T ss_dssp --------
T ss_pred ceEEEecC
Confidence 34444443
No 464
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=68.05 E-value=3.3 Score=47.49 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=12.1
Q ss_pred CCCCccccccCcCccccccccC
Q psy8139 1016 TDDEDEEDEEDSFDFDELFEDN 1037 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~~~~~~~~ 1037 (1101)
++|||||.||-+.|..|+++++
T Consensus 951 et~edees~e~seD~sedeSe~ 972 (1001)
T COG5406 951 ETDEDEESDESSEDLSEDESEN 972 (1001)
T ss_pred cccccccccccccccccccccc
Confidence 3445566666666665555443
No 465
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=67.71 E-value=83 Score=27.38 Aligned_cols=83 Identities=8% Similarity=0.077 Sum_probs=51.1
Q ss_pred eecCceeEEccCCeEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceE
Q psy8139 456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI 535 (1101)
Q Consensus 456 ~~~p~~~~v~~g~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~ 535 (1101)
...|....|..|+++.+.|...=..+..+.|.-.- .+..+....+-..+.+.|+.. .....|.+.-......
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L------~k~~~~~g~~W~~f~LsnV~~--ds~~~C~~~C~g~Q~~ 78 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSL------SKTELDSGPQWKAFQLSNVTE--DSSPLCFFNCSGEQSS 78 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESSSS-SEEEEESSS------EEEEEEEETTEEEEEEEEE-S--CEEEEEEEEETTEEEE
T ss_pred EEECCccEECCCCCEEEEEcCCCCCCCcceEEEec------CCcccCCCCcEEEEEEEcccc--CCeEEEEEEcCCeEEE
Confidence 34577888999999999999753332344453221 111222234455788899885 4677898876544556
Q ss_pred EEEEEeeccCC
Q psy8139 536 TKARLRLEAPP 546 (1101)
Q Consensus 536 ~s~~l~V~~~p 546 (1101)
.++.++|..+|
T Consensus 79 ~~~~ItVY~~P 89 (91)
T PF03921_consen 79 ASANITVYKPP 89 (91)
T ss_dssp EEEEEEEEB--
T ss_pred eEEeeEEeCCC
Confidence 67888888776
No 466
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=66.55 E-value=1.3e+02 Score=32.93 Aligned_cols=111 Identities=11% Similarity=-0.001 Sum_probs=62.1
Q ss_pred cccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecC
Q psy8139 312 NQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG 391 (1101)
Q Consensus 312 ~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~ 391 (1101)
+...+....|.+.+....+.-.- ++......+-..|.....+..+ ....+.+.|+|..+.. +..|.|+....+
T Consensus 130 ~~~~~~~~~~~Iia~~f~~~~sf-sf~gVE~~~~~~P~ei~~~~~~-~d~~~~i~ls~dg~~~-----~~yy~IY~~~~g 202 (343)
T COG3401 130 DLGHNEKYMELIIAADFQMGKSF-SFTGVEATPKAEPKEITNVRVS-FDLGNNIELSEDGSEA-----EDYYRIYASDSG 202 (343)
T ss_pred ccccccceeeeEEeeccccccee-eeeeeecccccCCceeeeeeee-cCCCCcceeeccCccc-----cceEEEeccCCc
Confidence 34444555666766444443222 2344444444455555554444 4567889999988743 337888876655
Q ss_pred CCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCC
Q psy8139 392 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF 431 (1101)
Q Consensus 392 ~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~ 431 (1101)
......... ...+.+...-...+..+.|.+++....|.
T Consensus 203 ~e~~~~ia~--t~~n~y~d~~eglga~~~y~VTtVd~~~~ 240 (343)
T COG3401 203 NEEYGFIAQ--TTENSYYDVKEGLGAVEYYKVTTVDNTGF 240 (343)
T ss_pred cccccceee--ccccchhhhhhccCceeEEEEEEEcCCcc
Confidence 443332221 22344444444458888899988875553
No 467
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=65.60 E-value=47 Score=29.31 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=39.6
Q ss_pred EEeeCCEEEE-EEEEe-ecCCCeeEEEECCeecCC-------CCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCC
Q psy8139 559 LFEMGEIIKL-KVSMA-GMPPPTARWLHNGEPLTS-------GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627 (1101)
Q Consensus 559 ~v~~g~~~~l-~c~~~-g~p~~~v~W~~~g~~l~~-------~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~ 627 (1101)
.+..|..+.+ .|.+. |.|.+.|+|+.+...... .+.+.+ .+.+.+......+.-.++|.+....
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV-----~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTV-----TSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEE-----EEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 5567777777 77664 778999999976332211 111111 3345555555557778999987653
No 468
>PHA03042 CD47-like protein; Provisional
Probab=65.57 E-value=33 Score=35.89 Aligned_cols=67 Identities=12% Similarity=0.227 Sum_probs=42.1
Q ss_pred CCEEEEEEEEeec-----CCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEE
Q psy8139 563 GEIIKLKVSMAGM-----PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLV 636 (1101)
Q Consensus 563 g~~~~l~c~~~g~-----p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l 636 (1101)
++++.+.|..... ....+.|..++..+-.... . +..++.+. -...-.|+|+|.|.+..-.+.....+
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~-----t-n~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN-----T-NTSSLKFN-FSKNLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC-----C-cceEEEEe-ccccCCCceeEEEeecccCccEEEEE
Confidence 5678889988753 4678999999877642111 0 12445544 33345799999998765554444433
No 469
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=64.87 E-value=65 Score=35.60 Aligned_cols=122 Identities=17% Similarity=0.195 Sum_probs=70.8
Q ss_pred ceeEEccCCeEEEEEEEe--ccCC-CeEEEEECCEEeec-----------------CCcEEEEec------CCeeEEEEe
Q psy8139 460 HDTTALEDEKVEFTVQVE--GIPT-PKVSWYKDGFEIFS-----------------SRRQRIVTD------NDISTLIIH 513 (1101)
Q Consensus 460 ~~~~v~~g~~v~L~C~~~--g~p~-~~v~W~~~g~~~~~-----------------~~~~~~~~~------~~~~~l~I~ 513 (1101)
.+..+..|..+.+.|... |+.. ....|..-|-++.+ ...+.+..- -..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 355667799999999775 3333 25789875543321 122222221 124689999
Q ss_pred ecCCCCCEEEEEEEEeCCCceEEEEEEeeccCCccccCCCCCCCeEEee-CCEEEEEEEEeec--CCCeeEEEECCeecC
Q psy8139 514 QAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM-GEIIKLKVSMAGM--PPPTARWLHNGEPLT 590 (1101)
Q Consensus 514 ~l~~~d~g~Y~C~a~n~~g~~~~s~~l~V~~~p~~~~~~~~~~~~~v~~-g~~~~l~c~~~g~--p~~~v~W~~~g~~l~ 590 (1101)
++.....|-|.|.|....-.....--|.|...-.+. .... .....+.|-+... .++.+.|..+|....
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~---------W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFK---------WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEeccEEEEE---------EEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 999999999999998753322222222222111110 1112 3345577877655 356799999886554
No 470
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=63.68 E-value=2.3 Score=40.86 Aligned_cols=6 Identities=0% Similarity=-0.058 Sum_probs=2.7
Q ss_pred hhhccc
Q psy8139 938 EEEAKV 943 (1101)
Q Consensus 938 i~gY~I 943 (1101)
|.||.+
T Consensus 101 isG~~~ 106 (149)
T PF03066_consen 101 ISGQHL 106 (149)
T ss_dssp EEEEEE
T ss_pred eeCccc
Confidence 444443
No 471
>KOG3130|consensus
Probab=63.45 E-value=4.2 Score=44.10 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=15.7
Q ss_pred ccccccCCCcccCccCCCCc-cccc
Q psy8139 1031 DELFEDNPEEEYDEDDRDQP-INFA 1054 (1101)
Q Consensus 1031 ~~~~~~~~~~~~~~~~~~~~-~~~~ 1054 (1101)
|.+++|+++|+|.-+|-..| |+|+
T Consensus 289 ddd~~d~d~e~~~v~dN~~p~i~f~ 313 (514)
T KOG3130|consen 289 DDDDGDNDHEALGVGDNSIPTIYFS 313 (514)
T ss_pred cccccccchhhhccCCCcCcccccc
Confidence 45566777777777777665 4554
No 472
>KOG0262|consensus
Probab=63.28 E-value=6.6 Score=49.08 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=22.2
Q ss_pred ccCCCcccCccCCCCcccccccccccccc-cccccccccc
Q psy8139 1035 EDNPEEEYDEDDRDQPINFARNRHNKYIE-DDQEEIYHPK 1073 (1101)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 1073 (1101)
+|+.|+++||||++.+-.-.+.+.+.=-| .|.+|.+++.
T Consensus 1338 ~~e~~~~~ddddas~~k~~~k~~~~~dYe~~de~e~~~~~ 1377 (1640)
T KOG0262|consen 1338 DDESEDDEDDDDASDAKLHKKTEEEADYESEDEDERVEER 1377 (1640)
T ss_pred cccccccCcccchhHHHHhhhhccccCcCCCchhhhhhhh
Confidence 45566666777777766666655544333 3333666653
No 473
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=63.25 E-value=15 Score=29.50 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=25.6
Q ss_pred CCceeecccccCccEEEEcCCCCCceEEEEEEEEcCCccC
Q psy8139 732 PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFS 771 (1101)
Q Consensus 732 ~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g 771 (1101)
..|..... ...++.+++|.||+ |+|.|.|.+..|..
T Consensus 19 ~~W~~~~~---~~~~~~~~~L~~G~-Y~l~V~a~~~~~~~ 54 (66)
T PF07495_consen 19 DEWITLGS---YSNSISYTNLPPGK-YTLEVRAKDNNGKW 54 (66)
T ss_dssp SSEEEESS---TS-EEEEES--SEE-EEEEEEEEETTS-B
T ss_pred CeEEECCC---CcEEEEEEeCCCEE-EEEEEEEECCCCCc
Confidence 57877543 22289999999996 99999999998873
No 474
>KOG0162|consensus
Probab=62.81 E-value=14 Score=43.49 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8139 67 SSAVKIQEWYRNLQCMRQARQQ 88 (1101)
Q Consensus 67 ~aa~~iQ~~~R~~~~r~~~~~~ 88 (1101)
.-|.+||++||.+++||++.++
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ 718 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKM 718 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999876544
No 475
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=62.58 E-value=46 Score=29.66 Aligned_cols=51 Identities=25% Similarity=0.401 Sum_probs=34.6
Q ss_pred EEEEECCEEeec---CCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139 484 VSWYKDGFEIFS---SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536 (1101)
Q Consensus 484 v~W~~~g~~~~~---~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~ 536 (1101)
++|..+...... +.++.+...+. +|.|..+++.|+|.|...+.+..|....
T Consensus 46 ltW~n~~~~~~~~~~n~r~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V~~ 99 (108)
T PF11465_consen 46 LTWKNDSTPSYNSSFNNRFNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKVCT 99 (108)
T ss_dssp EEEETTEEEESSTTHHHHEEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred EEEcCCCcccccccccceEeeeccCc--eEEEeecCcccCceEEEEEEcCCCcEEE
Confidence 667544443332 24555555554 8999999999999999999998887643
No 476
>PHA02608 67 prohead core protein; Provisional
Probab=62.27 E-value=4.5 Score=32.83 Aligned_cols=8 Identities=50% Similarity=0.958 Sum_probs=3.4
Q ss_pred CcccCccC
Q psy8139 1039 EEEYDEDD 1046 (1101)
Q Consensus 1039 ~~~~~~~~ 1046 (1101)
+.++||||
T Consensus 72 d~~dDedD 79 (80)
T PHA02608 72 DDDDDEDD 79 (80)
T ss_pred cccccccc
Confidence 33444444
No 477
>KOG0943|consensus
Probab=61.15 E-value=6.2 Score=48.67 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=13.6
Q ss_pred ccccCCceeEeecCCCCCCCceeecee
Q psy8139 962 SLPVNSDIQIKIDKPDDEPDYVIKGKY 988 (1101)
Q Consensus 962 ~l~~~~~~~~~i~~~~~~~~~~~~~~~ 988 (1101)
++|..++-..+=+-+.|--...++|+-
T Consensus 1686 sl~iR~ddeaqd~iptprrrrllsgnt 1712 (3015)
T KOG0943|consen 1686 SLPIRGDDEAQDDIPTPRRRRLLSGNT 1712 (3015)
T ss_pred cccccCCccccccCCCchhhhhccCCc
Confidence 355555544444444444455566643
No 478
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=59.31 E-value=31 Score=30.34 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=21.6
Q ss_pred CCEEEEEEEEeecC--CCeeEEEECCee
Q psy8139 563 GEIIKLKVSMAGMP--PPTARWLHNGEP 588 (1101)
Q Consensus 563 g~~~~l~c~~~g~p--~~~v~W~~~g~~ 588 (1101)
++.++|.|.+.|.- ...|+|.++|..
T Consensus 16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 16 SDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 55688999999853 578999999987
No 479
>PHA02633 hypothetical protein; Provisional
Probab=59.23 E-value=23 Score=28.03 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=30.5
Q ss_pred eEEEEEccCCCCCCeEEEEEEEeCCCCceeEEEEEEecC
Q psy8139 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641 (1101)
Q Consensus 603 ~~sl~i~~l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~ 641 (1101)
...|.|-+....|+|.|.|...|..-....+..++|...
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 456778888889999999999987666666777777644
No 480
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=59.07 E-value=5.7 Score=45.72 Aligned_cols=41 Identities=29% Similarity=0.445 Sum_probs=20.0
Q ss_pred cccccccCCCCCCCccc--cccCcCccccccccCCCcccCccC
Q psy8139 1006 SSEMSEASNITDDEDEE--DEEDSFDFDELFEDNPEEEYDEDD 1046 (1101)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 1046 (1101)
++++||-+-+++|+-.| |||.+..-+||-++++.|.|.+|+
T Consensus 935 eeEvSEyeaS~dd~sdet~edees~e~seD~sedeSe~~~~De 977 (1001)
T COG5406 935 EEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDE 977 (1001)
T ss_pred chhhhhhhccCCCcccccccccccccccccccccccccccccc
Confidence 45666666666666555 333333334444444444444443
No 481
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=57.25 E-value=20 Score=32.19 Aligned_cols=66 Identities=26% Similarity=0.376 Sum_probs=41.9
Q ss_pred CCCCCeeEEEEeCCCC---CCCc--------CeeEEEEEEEecCCCceEEcCccccccceEEEcCccCCccEEEEEEEE
Q psy8139 359 SLDRDVFTIRWEPPEY---DGGS--------PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAE 426 (1101)
Q Consensus 359 ~~~~~sv~l~W~~p~~---~g~~--------~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~ 426 (1101)
....+++.|.+.+|.. .++. +-..|.|.+...++..-... .......+.|.+|.|++.|=+++.|.
T Consensus 11 ~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~--~~~~~~~~~l~~L~p~t~YCv~V~~~ 87 (106)
T PF09294_consen 11 SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKE--IETKNSSVTLSDLKPGTNYCVSVQAF 87 (106)
T ss_dssp EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEE--EESSSEEEEEES--TTSEEEEEEEEE
T ss_pred EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEE--EeecCCEEEEeCCCCCCCEEEEEEEE
Confidence 4568899999999840 0111 12469999877666522211 12334567999999999999999993
No 482
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=56.51 E-value=95 Score=26.77 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=36.3
Q ss_pred eEEEEEEEeccCCCeEEEEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE
Q psy8139 469 KVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536 (1101)
Q Consensus 469 ~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~ 536 (1101)
...|.+.+.+. ...+.|+-||..+....... .+.+ .+...|.|+..+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~--------~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH--------QLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCCCC--------eEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 45666666665 44899999999884332111 2222 335678999998888776543
No 483
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=55.81 E-value=70 Score=27.76 Aligned_cols=62 Identities=10% Similarity=0.268 Sum_probs=40.9
Q ss_pred EEeeCCEEEEEEEEeec-----CCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCCeEEEEE
Q psy8139 559 LFEMGEIIKLKVSMAGM-----PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622 (1101)
Q Consensus 559 ~v~~g~~~~l~c~~~g~-----p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~y~y~c~ 622 (1101)
.+..|++++..|..... ....+.|..++..++. ..+..... ..+++++.++.+...-.|.|.
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~-~qy~~in~-~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG-SQYRVIND-TVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC-GCEEEEST-TEEEEEESS--SSEEEEEEEE
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh-hHcceeCC-eEEEEEEccCCCCCceEEEEE
Confidence 67889999999998732 4568999999886654 44544433 357888888887665556555
No 484
>KOG0377|consensus
Probab=55.57 E-value=48 Score=36.95 Aligned_cols=23 Identities=35% Similarity=0.689 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8139 66 KSSAVKIQEWYRNLQCMRQARQQ 88 (1101)
Q Consensus 66 ~~aa~~iQ~~~R~~~~r~~~~~~ 88 (1101)
.+||+.||.|||++.+|...++.
T Consensus 17 ikaAilIQkWYRr~~ARle~rrr 39 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEARRR 39 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 36888899999998887766544
No 485
>KOG1824|consensus
Probab=55.39 E-value=5.1 Score=48.73 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=10.2
Q ss_pred ccccCcCccccccccCCCcccCccCCC
Q psy8139 1022 EDEEDSFDFDELFEDNPEEEYDEDDRD 1048 (1101)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1101)
|||+..+-.|++|+|-.+|-+||||.+
T Consensus 319 eDed~~~~ed~eDde~~deYsDDeD~S 345 (1233)
T KOG1824|consen 319 EDEDAMFLEDEEDDEQDDEYSDDEDMS 345 (1233)
T ss_pred cchhhhhhhccccchhccccccccchh
Confidence 444443333333333323333444433
No 486
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=55.03 E-value=4.8e+02 Score=31.95 Aligned_cols=376 Identities=13% Similarity=0.074 Sum_probs=0.0
Q ss_pred cccCcceEE--Eeeecccccccccc-eeeeccCCCCCCCCCcccCC---CCCCCCCeeEEEEeCCCCCCCcCeeEEEEEE
Q psy8139 314 FENQAPLYV--RLEEAITGLNVGTD-LYCVIKKPPGPPGKPQLLPD---SPSLDRDVFTIRWEPPEYDGGSPVLGYLVEH 387 (1101)
Q Consensus 314 ~~~d~g~Y~--c~a~n~~G~~~s~~-~~~~v~~~p~~P~~p~~l~~---~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~ 387 (1101)
.+...|.|. |.|........=++ ..+.....|-.|.....+.. ........+++.=.+. .|....-.|.|..
T Consensus 251 ~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~--GG~~llYrf~I~G 328 (667)
T PRK14081 251 KEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAE--GGKELLYRFIIKG 328 (667)
T ss_pred EeCCCccEEEEEEEeccCcccccccceEEEEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEec--CCCceEEEEEECC
Q ss_pred EecCCCceEEcCccccccceEEEcCccCCccEEEEEEEEecCCCC-CCCCCCcceEEEeccCCCCCCee--eecCceeEE
Q psy8139 388 RRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFS-EPGPLSEPLTVTYQRSPAAAPSF--IRALHDTTA 464 (1101)
Q Consensus 388 ~~~~~~~w~~~~~~~~~~~~l~i~~L~p~d~y~y~c~A~n~~G~~-~~s~~s~~vtv~~~~~~~~~P~~--~~~p~~~~v 464 (1101)
.......|...+.. +-+|...|.|.+.+.-....+ ..-.....+...+...+..|..+ +..+..-..
T Consensus 329 ~~~e~~~Y~~~n~~----------~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~ 398 (667)
T PRK14081 329 KESEDSGYIRNNIY----------TWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHI 398 (667)
T ss_pred cEEeeccccccceE----------EEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCce
Q ss_pred ccCCeEEEEEEEeccCCCeEE-EEECCEEeecCCcEEEEecCCeeEEEEeecCCCCCEEEEEEEEeCCCceEE------E
Q psy8139 465 LEDEKVEFTVQVEGIPTPKVS-WYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT------K 537 (1101)
Q Consensus 465 ~~g~~v~L~C~~~g~p~~~v~-W~~~g~~~~~~~~~~~~~~~~~~~l~I~~l~~~d~g~Y~C~a~n~~g~~~~------s 537 (1101)
..|+++.+.|.+.|.-...+. |.+.+........+. .-.--+..|..+|.|+..+.-....+.. .
T Consensus 399 lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~--------~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~ 470 (667)
T PRK14081 399 LKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYG--------KNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTI 470 (667)
T ss_pred EeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecc--------cccEEEEEECCCeeEEEEEEEecccCchhcccceE
Q ss_pred EEEeecc-CCccccCCCCCCCeEEeeCCEEEEEEEEeecCCCeeEEEECCeecCCCCceEEEeecceEEEEEccCCCCCC
Q psy8139 538 ARLRLEA-PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADR 616 (1101)
Q Consensus 538 ~~l~V~~-~p~~~~~~~~~~~~~v~~g~~~~l~c~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~sl~i~~l~~~~~ 616 (1101)
..+.|.. .|....--..+.......|+.+++.|...+.....+... ..-.+.....+.-.....+.+. |..+
T Consensus 471 v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~----~~~NG~~v~~t~Ys~~~~ysf~---P~~~ 543 (667)
T PRK14081 471 VYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYI----LKINGHKVEETDYIKNKKYKFI---PKCS 543 (667)
T ss_pred EEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEE----EEECCEEEEEeeccccceEEEe---ecCC
Q ss_pred eEEEEEEEeCCCCc------eeEEEEEEecCCCCCCccEEEEecCC---eEEEEeecCCCCCCcccceeEEEEEcCCCCC
Q psy8139 617 GEYQAHGVNSLGED------VASFLVTVTDRPLPPGKAKVVMTLGK---SVTLSWSEPEDDGGCKIGNYIVEYFRPPGPP 687 (1101)
Q Consensus 617 y~y~c~A~N~~G~~------~~s~~l~v~~~P~~P~~~~~~~~~~~---sv~lsW~~p~~~~g~~i~~Y~v~~~~~~~~p 687 (1101)
|.|++.+.-..+.+ .....+.|. -+.|+.+..+...... ...++|.+-...|.
T Consensus 544 GkY~I~V~aKn~~s~~~~D~~k~v~~~V~-e~~pi~nt~~~~~~~~~~~n~~~t~~~~~~gg~----------------- 605 (667)
T PRK14081 544 GKYTIEVLAKNIKSTEEYDSKKEVKFYVR-EALPITNTKIKTSKKKFKCNEEVTFSVKSEGGK----------------- 605 (667)
T ss_pred ceEEEEEEEcccccccccccceEEEEEEc-CCCCceeeEEEeecceEEcCCeEEEEEEccCCC-----------------
Q ss_pred CCCcccCCCCCCCCceEEEEeeCCCCCCCCCcceEEEEEEeCCCCCceeecccccCccEEEEcCCCCCceEEEEEEEEcC
Q psy8139 688 GKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV 767 (1101)
Q Consensus 688 ~~p~~~~~~~~~~~~si~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~ 767 (1101)
-.-|+.+....+ .|..+... +..+.|++.-...|. |.+-|.+...
T Consensus 606 -------------------------------~v~Yef~v~~~g--~w~~vq~y-s~k~~ysf~p~~~g~-Y~ilvl~ks~ 650 (667)
T PRK14081 606 -------------------------------DVCYEFYIMEKG--EWKLVQKY-SRKNYYSFMPFNKGK-YKVLVLCKSY 650 (667)
T ss_pred -------------------------------cEEEEEEEEECC--cEEEEeec-cccCceEEEeccCCc-EEEEEEEecc
Q ss_pred Cc
Q psy8139 768 VG 769 (1101)
Q Consensus 768 ~G 769 (1101)
.+
T Consensus 651 ~~ 652 (667)
T PRK14081 651 YK 652 (667)
T ss_pred cc
No 487
>KOG2652|consensus
Probab=53.43 E-value=8.3 Score=41.42 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCCCCCccccccCcCccccccccCCCcccCccC-CCCccc
Q psy8139 1014 NITDDEDEEDEEDSFDFDELFEDNPEEEYDEDD-RDQPIN 1052 (1101)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 1052 (1101)
.+.+-|..||||++-|.+.+++|+...++|||+ ..+|+|
T Consensus 256 ~~~~~eE~e~Eee~~~~~~~~dee~~n~Dd~D~~Eeepln 295 (348)
T KOG2652|consen 256 TGDTSEEDENEEEDDDPDPDEDEELGNSDDDDGVEEEPLN 295 (348)
T ss_pred cccccccccccccccCcccchhhhcccccccCcccccccc
No 488
>PF05320 Pox_RNA_Pol_19: Poxvirus DNA-directed RNA polymerase 19 kDa subunit; InterPro: IPR007984 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses the transcription of DNA into RNA. It consists of at least eight subunits, this is the 19 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=52.24 E-value=4.6 Score=37.66 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=11.1
Q ss_pred ccccCCCCCCCccccccCcCcccccc
Q psy8139 1009 MSEASNITDDEDEEDEEDSFDFDELF 1034 (1101)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1101)
|.+...+.+++.+||+..+.|.++++
T Consensus 1 M~ds~di~~~~sde~~~~~yee~~e~ 26 (167)
T PF05320_consen 1 MEDSDDIIDYESDEDDIEEYEEEEED 26 (167)
T ss_pred CcchHHHHhhhccCcchhhhhhhccc
Confidence 34444455554444443343333333
No 489
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=51.78 E-value=1.7e+02 Score=32.56 Aligned_cols=107 Identities=18% Similarity=0.354 Sum_probs=64.7
Q ss_pred CeEEeeCCEEEEEEEEee---cCCCeeEEEECCeecCC-----------------CCceEEEee------cceEEEEEcc
Q psy8139 557 GLLFEMGEIIKLKVSMAG---MPPPTARWLHNGEPLTS-----------------GGRYEITHT------DRYLNLRISD 610 (1101)
Q Consensus 557 ~~~v~~g~~~~l~c~~~g---~p~~~v~W~~~g~~l~~-----------------~~~~~~~~~------~~~~sl~i~~ 610 (1101)
.+.+..|..+.+.|..+. ..-....|.-.|-++.+ ...+.+... -..++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 456667999999998875 33456889865544431 223444332 1257899999
Q ss_pred CCCCCCeEEEEEEEeCCCCceeEEEEEEecCCCCCCccEEEEecCCeEEEEeecCCCCCCcccceeEEEE
Q psy8139 611 ARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY 680 (1101)
Q Consensus 611 l~~~~~y~y~c~A~N~~G~~~~s~~l~v~~~P~~P~~~~~~~~~~~sv~lsW~~p~~~~g~~i~~Y~v~~ 680 (1101)
+.-...|.|.|.|....-......-+.| .+.|.+.|..- .++-..+.-|...|
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V----------------~d~V~f~W~~e-~~n~T~V~Cyv~sy 405 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKV----------------ADHVFFKWNTE-GDNETKVACYAAQY 405 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEe----------------ccEEEEEEEec-cCceEEEEEEEEec
Confidence 9999999999999764322222211222 35678888843 23333455555444
No 490
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=51.74 E-value=9.1 Score=48.44 Aligned_cols=44 Identities=34% Similarity=0.524 Sum_probs=0.0
Q ss_pred cccccccCCCCCCCccccccCcCccccccccCCCcccCccCCCC
Q psy8139 1006 SSEMSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQ 1049 (1101)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1101)
+...++...-.+|+|+|++|..+|.|+++++++++++|++|.++
T Consensus 344 ~~~~~~ed~e~~ddD~e~~~ed~d~~~d~~~~~~~~~d~e~~~e 387 (840)
T PF04147_consen 344 EEGEEDEDDEEEDDDEEEEEEDEDEDEDEEDEEDEESDDEDEEE 387 (840)
T ss_pred ccCccccccccccCccccccccccccchhhhccccccccccccc
No 491
>KOG2055|consensus
Probab=50.12 E-value=11 Score=42.22 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=0.0
Q ss_pred cCCCcccccccccCCCCCCCccccccCcCccccccccCCCcccCccCCCCccccccccccccccccccccccccccccc
Q psy8139 1000 KLKPQYSSEMSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFARNRHNKYIEDDQEEIYHPKLMTMR 1078 (1101)
Q Consensus 1000 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1101)
+++ .++++|+++..-+-+++|.+.=..+|+..-.+++++.|+++||.+----.+.+.---++..|.|.+--+-+|+||
T Consensus 45 e~~-~~~s~~~~~~fgd~e~~~~~~lf~vd~~~~~~~~D~~~~e~~ne~kg~~~~~~k~aaW~DedDe~l~V~~~~~nr 122 (514)
T KOG2055|consen 45 ELE-YVESEMEEVQFGDLERLEDALLFSVDQGLVNDDEDSQESEVDNESKGQVIPSEKPAAWEDEDDEDLVVADKMTNR 122 (514)
T ss_pred ccc-cccccchhhhccchhhhchhhhhhccCCCcccCcccccccccccccCCCCcccccccccCCcccccchhhhhhhh
No 492
>KOG0262|consensus
Probab=49.18 E-value=10 Score=47.54 Aligned_cols=52 Identities=37% Similarity=0.555 Sum_probs=0.0
Q ss_pred ccccccCCCCCCCccccccCc---------------Cccccccc-cCCCcccCccCCCCccccccccccccccccccc
Q psy8139 1007 SEMSEASNITDDEDEEDEEDS---------------FDFDELFE-DNPEEEYDEDDRDQPINFARNRHNKYIEDDQEE 1068 (1101)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1101)
++.+.+.+..+|.|.||||+. .|-|+.|| |..++.+||+|.++--+ |||.|+
T Consensus 1327 ~~~~~~~~~~~~~e~~~~~ddddas~~k~~~k~~~~~dYe~~de~e~~~~~~~e~~~~~e~~----------e~d~e~ 1394 (1640)
T KOG0262|consen 1327 DEVGGEDNEDSDDESEDDEDDDDASDAKLHKKTEEEADYESEDEDERVEEREDEGDEDEESD----------EDDEEV 1394 (1640)
T ss_pred ccccCCccccccccccccCcccchhHHHHhhhhccccCcCCCchhhhhhhhhcccccccccc----------cchhhc
No 493
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=48.66 E-value=12 Score=46.35 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=0.0
Q ss_pred cccccccCCCCCCCccccccCcCccccccccCCCcccCccCCCCccccc
Q psy8139 1006 SSEMSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFA 1054 (1101)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1101)
+..+.+..+.+..+.|++++......|..|+++++|++|||.+++..|.
T Consensus 849 e~g~~~~~~~d~~dse~~~~~~~~~e~~~~ee~~~ee~eeeee~~~~~~ 897 (1096)
T TIGR00927 849 EKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897 (1096)
T ss_pred cccccccCCCCcccccccccccchhhhcccccccccccccccccccccc
No 494
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.51 E-value=13 Score=39.31 Aligned_cols=41 Identities=29% Similarity=0.569 Sum_probs=0.0
Q ss_pred ccccccccCCCCCCCccccccCcCccccccccCCCcccCcc
Q psy8139 1005 YSSEMSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDED 1045 (1101)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1045 (1101)
+.++-.+..=.+.+++++++++++|||++.+|+++.+++++
T Consensus 35 f~Eee~D~ef~~~~~eed~~~~Dsdf~~se~de~~~~~e~e 75 (240)
T PF05764_consen 35 FQEEEDDEEFESEEEEEDEEEDDSDFDDSEDDEDESDDEEE 75 (240)
T ss_pred ccccCCCccccCCCccccccccccccCccccCCCCCcccch
No 495
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=48.49 E-value=11 Score=45.98 Aligned_cols=43 Identities=37% Similarity=0.487 Sum_probs=0.0
Q ss_pred ccccccCCCCCCCccccccCcCccccccccCCCcccCccCCCC
Q psy8139 1007 SEMSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQ 1049 (1101)
Q Consensus 1007 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1101)
.+|.+.+..++++|++|||+..|.++..+++...++|+||.++
T Consensus 125 ~~~~~~~~~~~~~~~D~e~d~~~e~~~~~~~~~~~~d~d~~~~ 167 (622)
T PF02724_consen 125 EEMPEEEDDEDDEDSDDEDDEEDEESDSSDERDSWSDEDEDDD 167 (622)
T ss_pred hhccccccccccccCcccccccccccccccccccccccccccc
No 496
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=46.87 E-value=25 Score=24.19 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy8139 279 CAVKIQSLWKMYRVRKK 295 (1101)
Q Consensus 279 aa~~iQs~~r~~~~r~~ 295 (1101)
|+.+||-.||.++.|+.
T Consensus 11 At~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 11 ATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 497
>KOG0699|consensus
Probab=46.32 E-value=12 Score=40.18 Aligned_cols=51 Identities=33% Similarity=0.322 Sum_probs=0.0
Q ss_pred ccCCC-cccccccccCCCCCCCccccc----cCcC----ccccccccCCCcccCccCCCC
Q psy8139 999 SKLKP-QYSSEMSEASNITDDEDEEDE----EDSF----DFDELFEDNPEEEYDEDDRDQ 1049 (1101)
Q Consensus 999 ~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~ 1049 (1101)
||-+| |-+--.|...--..++.|||+ +++. ++-|.+||++|.+++|.|..+
T Consensus 248 sKsef~fE~~~sS~d~~D~a~~EEeD~~k~~d~sd~~sse~~eneed~Ded~e~e~ddEE 307 (542)
T KOG0699|consen 248 SKSEFDFETAPSSSDGVDGAATEEEDEVKSPDDSDAESSEFVENEEDDDEDAEDEQDDEE 307 (542)
T ss_pred cccccccccCCCcccccccccccccccccCCcccccccchhcccccccccccccccchhh
No 498
>KOG0127|consensus
Probab=46.05 E-value=11 Score=43.02 Aligned_cols=46 Identities=33% Similarity=0.377 Sum_probs=0.0
Q ss_pred ccccccccCCCCCCCccccccCcCccccccccCC-------------CcccCccCCCCc
Q psy8139 1005 YSSEMSEASNITDDEDEEDEEDSFDFDELFEDNP-------------EEEYDEDDRDQP 1050 (1101)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~ 1050 (1101)
+-..+.++++-+.++|+.++-+..|..++.||++ |+|+++|+-|+.
T Consensus 210 ~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~ 268 (678)
T KOG0127|consen 210 LKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDE 268 (678)
T ss_pred hhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccc
No 499
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=45.78 E-value=1e+02 Score=27.26 Aligned_cols=78 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCcccCCCCCCCCCeeEEEEeCCCCCCCcCeeEEEEEEEecCCCceEEcCcccccc---ceEEEcCccCCcc----EEEE
Q psy8139 350 KPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVED---TELMVSGLEPGWR----YQFR 422 (1101)
Q Consensus 350 ~p~~l~~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~---~~l~i~~L~p~d~----y~y~ 422 (1101)
+|..|.|. -.+...++.+|.+. ....+-+.|.|.+................+. ....+......+. +.+.
T Consensus 1 ~~~nlsC~-~~~~~~m~CtW~~g--~~~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~ 77 (99)
T PF09240_consen 1 KPQNLSCF-IYNLEYMNCTWEPG--KEAPPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVC 77 (99)
T ss_dssp S-EEEEEE-EETTTEEEEEEECC--TTCSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEE
T ss_pred CCeeCEEE-EECCEEEEEEECCC--CCCCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEE
Q ss_pred EEEEecCC
Q psy8139 423 ITAENVVG 430 (1101)
Q Consensus 423 c~A~n~~G 430 (1101)
+.+.+..|
T Consensus 78 V~~ss~~~ 85 (99)
T PF09240_consen 78 VNGSSSAG 85 (99)
T ss_dssp EEEEETTE
T ss_pred EEeccCCC
No 500
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=45.65 E-value=9.8 Score=44.66 Aligned_cols=229 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred hcccccCcceEEEeeecccccccccceeeeccCCCCCCCCCcccCCCCCCCCC-eeE----EEEeCCCCCCCcCeeEEEE
Q psy8139 311 DNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRD-VFT----IRWEPPEYDGGSPVLGYLV 385 (1101)
Q Consensus 311 ~~~~~~d~g~Y~c~a~n~~G~~~s~~~~~~v~~~p~~P~~p~~l~~~~~~~~~-sv~----l~W~~p~~~g~~~i~~Y~v 385 (1101)
...+..+.+.|.+.+....+........+.+...+.++.....-.....++.. .++ .+.+|....+. ....|..
T Consensus 44 ~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~-~~l~y~W 122 (440)
T PF02010_consen 44 PYTLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGD-SGLTYSW 122 (440)
T ss_dssp CES--SCEEEEEEEEE--BCTTEEEEEEEEEEEE----------------------------------------------
T ss_pred cccCCCCCEEEEEEEEEECCCCceEEEEEEEEEeeccceeEEcCCccceeecCceEEEeeEEEecccccccC-CceEEEE
Q ss_pred EEEecCCC-----ceEEcCccccccceEEE--cCccCCccEEEEEEEEecCCCCCCCCCCcceEEEeccCCCCCCeeeec
Q psy8139 386 EHRRTGSP-----YWVRASPHMVEDTELMV--SGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458 (1101)
Q Consensus 386 ~~~~~~~~-----~w~~~~~~~~~~~~l~i--~~L~p~d~y~y~c~A~n~~G~~~~s~~s~~vtv~~~~~~~~~P~~~~~ 458 (1101)
........ .-............++| ..|.++..|.|++.+....+.. ......+......+|.+...
T Consensus 123 ~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s------~s~~~~v~v~~~~~p~v~I~ 196 (440)
T PF02010_consen 123 SCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSS------SSASQTVTVVSGDPPTVSIS 196 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCc------eeeEEEEEeccCCCCceeEc
Q ss_pred CceeE---EccCCeEEEEEEEec----cCCCeEEEEE--------CCEEeecCCcEEEEecCCeeEEEEe--ecCCCCCE
Q psy8139 459 LHDTT---ALEDEKVEFTVQVEG----IPTPKVSWYK--------DGFEIFSSRRQRIVTDNDISTLIIH--QAALMDEG 521 (1101)
Q Consensus 459 p~~~~---v~~g~~v~L~C~~~g----~p~~~v~W~~--------~g~~~~~~~~~~~~~~~~~~~l~I~--~l~~~d~g 521 (1101)
...-. +..++.+.|.....+ .....+.|.. ....+.... ...........|.|. .+.++..|
T Consensus 197 ~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Lvi~~~~l~~g~~Y 275 (440)
T PF02010_consen 197 CVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWS-SMTTTGSSSSNLVIDPGVLEPGSTY 275 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccc-ccccccccccccccccccccccccc
Q ss_pred EEEEEEEeCCCce-EEEEEEeeccCCc
Q psy8139 522 EIKCTATNRAGHS-ITKARLRLEAPPT 547 (1101)
Q Consensus 522 ~Y~C~a~n~~g~~-~~s~~l~V~~~p~ 547 (1101)
.+++.+.+..+.. .++..+.+..+|.
T Consensus 276 ~~~l~v~~~~~~~~~a~~~~~~n~pP~ 302 (440)
T PF02010_consen 276 TFRLTVTDSSGSSGSASISFTVNAPPS 302 (440)
T ss_dssp ---------------------------
T ss_pred ccccccccccccccccccccccccccc
Done!