RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8139
(1101 letters)
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 276 bits (708), Expect = 7e-84
Identities = 75/391 (19%), Positives = 130/391 (33%), Gaps = 69/391 (17%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG-------FEIFSSRRQRIVTDN 505
P I+ L + T E+ +V EG P P+++W + + R + +
Sbjct: 2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEI 565
S+L I L D G C A +R G L +E P + G
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTI---YYSWEGNP 117
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGG--RYEITHTDRYLNLRISDARRADRGEYQAHG 623
I + + PP + W + L + + T R + L I+ D G Y
Sbjct: 118 INISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177
Query: 624 VNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY--- 680
N +G +++ + D P P K++ + +S+++P+ GG I +Y V+
Sbjct: 178 TNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEV 237
Query: 681 -----------------------------FR---------------------PPGPPGKP 690
R P P P
Sbjct: 238 ASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPP 297
Query: 691 QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS 750
+ S F + + DGG+P+L Y+V++R +++
Sbjct: 298 SIHGQPSS--GKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILE 354
Query: 751 GLEPGWRYQFRITAENVVGFSEPGPLSEPLT 781
L+ Y+ +ITA N +G+SEP +
Sbjct: 355 HLQWTMGYEVQITAANRLGYSEPTVYEFSMP 385
Score = 100 bits (250), Expect = 1e-22
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 10/117 (8%)
Query: 338 YCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVR 397
+ P P ++ + + P+ GG P+ Y V+ + S W
Sbjct: 189 ILALADVPSSPYGVKI---IELSQTTA-KVSFNKPDSHGGVPIHHYQVDVKEVASEIWKI 244
Query: 398 ASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
H T ++++ LEP Y+ R+ A N G + S+ P PS
Sbjct: 245 VRSH-GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDY---SKIEIFQ--TLPVREPS 295
Score = 96.4 bits (240), Expect = 3e-21
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS 399
P P P + S F + + DGG+P+L Y+V++R
Sbjct: 286 FQTLPVREPSPPSIHGQPSS--GKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEK 342
Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 442
+++ L+ Y+ +ITA N +G+SEP +
Sbjct: 343 KVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMP 385
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 264 bits (676), Expect = 2e-80
Identities = 91/348 (26%), Positives = 124/348 (35%), Gaps = 54/348 (15%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRI-VTDNDI 507
A AP F L + +V G P P V WY+ G EI + RI
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM--GEI 565
LII D + ATN+ G A L +E P I LPK E GE+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN-LRISDARRADRGEYQAHGV 624
+ +K+ +G P P W + + + G Y++ T + + + + R D G Y
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 625 NSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPP 684
N G D + + V D P PP KV SV L+W+
Sbjct: 182 NRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWT--------------------- 220
Query: 685 GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVED 744
P DGGS + Y+VE T + W+R +
Sbjct: 221 -------------------------EPASDGGSKITNYIVEKCATTAERWLRVGQ--ARE 253
Query: 745 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
T V L YQFR+ AEN G S+P SEP T + A
Sbjct: 254 TRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTI-TKEDKTRAMN 300
Score = 106 bits (267), Expect = 2e-25
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 338 YCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVR 397
+ P PP ++ + RD + W P DGGS + Y+VE T + W+R
Sbjct: 192 ELDVADVPDPPRGVKVS----DVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLR 247
Query: 398 ASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 453
+T V L YQFR+ AEN G S+P SEP T + A
Sbjct: 248 VGQ--ARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTI-TKEDKTRAMN 300
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 214 bits (547), Expect = 4e-64
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 1/191 (0%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
AP + + D T E + + Q+ G P P + WY+ G E+ SR+ ++ +D TL
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
+ DEG C ATN G T ++L L+A P ++ +G ++L V
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA-RRADRGEYQAHGVNSLGED 630
G P P W H + L + I +T+ Y +L + + R+ G+Y+ N G
Sbjct: 127 YIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Query: 631 VASFLVTVTDR 641
A V + D+
Sbjct: 187 DAILDVEIQDK 197
Score = 93.6 bits (233), Expect = 7e-22
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 9/124 (7%)
Query: 418 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE 477
Y A N VG E S L + ++ + V
Sbjct: 77 VYTCI--ATNEVGEVE---TSSKLLL---QATPQFHPGYPLKEKYYGAVGSTLRLHVMYI 128
Query: 478 GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALM-DEGEIKCTATNRAGHSIT 536
G P P ++W+ + +S I + L++ G+ K +N G
Sbjct: 129 GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDA 188
Query: 537 KARL 540
+
Sbjct: 189 ILDV 192
Score = 82.0 bits (203), Expect = 7e-18
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 561 EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
++GE +L + G P P +W G+ L +Y+++ R L + + D G Y
Sbjct: 20 KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79
Query: 621 AHGVNSLGEDVASFLVTVTDRP----LPPGKAKVVMTLGKSVTLS 661
N +GE S + + P P K K +G ++ L
Sbjct: 80 CIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 190 bits (485), Expect = 1e-55
Identities = 53/196 (27%), Positives = 75/196 (38%), Gaps = 5/196 (2%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRI-VTDNDI 507
A AP F L + +V G P P V WY+ G EI + RI
Sbjct: 2 AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYED--GLLFEMGEI 565
LII D + ATN+ G A L +E P I LPK E + GE+
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT-DRYLNLRISDARRADRGEYQAHGV 624
+ +K+ +G P P W + + + G Y++ T + + R D G Y
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181
Query: 625 NSLGEDVASFLVTVTD 640
N G D + + V D
Sbjct: 182 NRFGIDQKTVELDVAD 197
Score = 99.0 bits (247), Expect = 9e-24
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 5/122 (4%)
Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI 479
+++ A N G + L V + P + + AL E V + G
Sbjct: 76 VYQVRATNQGGSVS---GTASLEVE-VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGK 131
Query: 480 PTPKVSWYKDGFEIFSSRRQRIVTDND-ISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
P P ++W K I ++ +++ S + + D G A NR G
Sbjct: 132 PDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 191
Query: 539 RL 540
L
Sbjct: 192 EL 193
Score = 65.1 bits (159), Expect = 5e-12
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 561 EMGEIIKLKVSMAGMPPPTARWLHNGEPL-TSGGRYEIT-HTDRYLNLRISDARRADRGE 618
L + G P P +W G+ + G +Y I Y L I+ D
Sbjct: 17 RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATV 76
Query: 619 YQAHGVNSLGEDVASFLVTVTDRP 642
YQ N G + + V
Sbjct: 77 YQVRATNQGGSVSGTASLEVEVPA 100
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 182 bits (465), Expect = 6e-53
Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 8/192 (4%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ--RIVTDNDIST 509
AP+F + L LE F + G P P+VSW++DG I +S +I + +
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLE---APPTIRLPKQYEDGLLFEMGEII 566
L I + G ATN +G + + A L ++ APP Q + G +
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQ---SMTVRQGSQV 121
Query: 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
+L+V + G+P P ++ +G + S ++I+ +L I++A D G Y + NS
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 627 LGEDVASFLVTV 638
+G ++ + V
Sbjct: 182 VGRATSTAELLV 193
Score = 115 bits (289), Expect = 2e-29
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
A N G + + L V + +P P+F++ L T + +V V+V GIPTP
Sbjct: 81 KATNGSGQAT---STAELLVKAETAP---PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPV 134
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
V +Y+DG EI SS +I + D+ +L+I +A D G ATN G + + A L ++
Sbjct: 135 VKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 74.4 bits (183), Expect = 3e-15
Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 10/125 (8%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR--YEITHT 600
+AP + + G + ++G P P W +G+ +++ +I+ +
Sbjct: 4 QAPTFTQPLQSVV----VLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFS 59
Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP----GKAKVVMTLGK 656
D L I +A+ G Y N G+ ++ + V PP + + G
Sbjct: 60 DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGS 119
Query: 657 SVTLS 661
V L
Sbjct: 120 QVRLQ 124
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 189 bits (481), Expect = 4e-51
Identities = 50/241 (20%), Positives = 89/241 (36%), Gaps = 13/241 (5%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
+A N +G + S LT+ P F E F V G K
Sbjct: 175 SASNPLGTASS---SAKLTL---SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIK 228
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
++W KD EI ++ + +TL + + D G+ C A+N AG A+L ++
Sbjct: 229 ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 288
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
PP K+ E + + E + + + G P W + + ++ ++ +
Sbjct: 289 EPPRFI--KKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV 346
Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKVVMTLGKSVTL 660
L + + D G+Y N+ G +S + V + P P + + G V L
Sbjct: 347 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL--KGADVHL 404
Query: 661 S 661
Sbjct: 405 E 405
Score = 173 bits (439), Expect = 1e-45
Identities = 63/242 (26%), Positives = 99/242 (40%), Gaps = 18/242 (7%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT-TALEDEKVEFTVQVEGIPTP 482
A NV G S L V P FI+ L + +DE + ++ G P
Sbjct: 271 YASNVAGKDS---CSAQLGVQ------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEI 321
Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542
KV WYKD EI S + R+ ++ L ++ ++ D G+ C A N AG + + L++
Sbjct: 322 KVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV 381
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
+ PP R + G + L+ + G PP W + L SG +Y+I +
Sbjct: 382 KEPPVFRKKPH---PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 438
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKVVMTLGKSVT 659
++ I + AD GEYQ N +G D +T+ P +G+ V
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDIST--VVGEEVQ 496
Query: 660 LS 661
L
Sbjct: 497 LQ 498
Score = 173 bits (439), Expect = 1e-45
Identities = 60/243 (24%), Positives = 98/243 (40%), Gaps = 14/243 (5%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
AEN VG S L + ++ P PSF R L D V F ++ G +
Sbjct: 79 KAENSVGAVA---SSAVLVIKERKLP---PSFARKLKDVHETLGFPVAFECRINGSEPLQ 132
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL- 542
VSWYKDG + + ++++TL I Q G+ C+A+N G + + A+L L
Sbjct: 133 VSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLS 192
Query: 543 --EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT 600
E PP L + +GE K + G P W + + GG Y++T
Sbjct: 193 EHEVPPFFDLKPV---SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV 249
Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP--LPPGKAKVVMTLGKSV 658
+ L + + D G+Y + N G+D S + V + P + + ++ +
Sbjct: 250 ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHT 309
Query: 659 TLS 661
Sbjct: 310 RYE 312
Score = 169 bits (430), Expect = 2e-44
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 10/217 (4%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
P FI L A E + +V+G P +++WYK+ ++ S+ ++ N++++L+
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEA---PPTIRLPKQYEDGLLFEMGEIIKL 568
I++ D GE C A N G + A L ++ PP+ + + +G +
Sbjct: 65 INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKD---VHETLGFPVAF 121
Query: 569 KVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
+ + G P W +GE L + + L+I ++ G+Y N LG
Sbjct: 122 ECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG 181
Query: 629 EDVASFLVTVTDRPLPP----GKAKVVMTLGKSVTLS 661
+S +T+++ +PP V + LG+S T
Sbjct: 182 TASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFK 218
Score = 167 bits (425), Expect = 8e-44
Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 13/218 (5%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
A N G + S L V P F + H L+ V +++G P +
Sbjct: 365 EAHNAAGSAS---SSTSLKVK------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQ 415
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
VSW+KD E+ S ++ +I+++N ++++ I D GE +C A+N G + L+
Sbjct: 416 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL-TSGGRYEITHTDR 602
APP ++ GE ++L+ ++ G P + W + + I++++
Sbjct: 476 APPRFVKKLSDISTVV---GEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
L+ S A A+ G+Y N G ++V +
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 177 bits (450), Expect = 7e-50
Identities = 45/214 (21%), Positives = 80/214 (37%), Gaps = 7/214 (3%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
A P F E F V G K++W KD EI ++ + +TL
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKV 570
+ + D G+ C A+N AG A+L ++ PP K+ E + + E + +
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFI--KKLEPSRIVKQDEHTRYEC 121
Query: 571 SMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630
+ G P W + + ++ ++ + L + + D G+Y N+ G
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 631 VASFLVTVTDRPL---PPGKAKVVMTLGKSVTLS 661
+S + V + P+ P + G V L
Sbjct: 182 SSSTSLKVKEPPVFRKKPHPVET--LKGADVHLE 213
Score = 175 bits (446), Expect = 3e-49
Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 13/220 (5%)
Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT-TALEDEKVEFTVQVEG 478
Q+ A NV G S L V P FI+ L + +DE + ++ G
Sbjct: 75 QYTCYASNVAGKDS---CSAQLGVQ------EPPRFIKKLEPSRIVKQDEHTRYECKIGG 125
Query: 479 IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
P KV WYKD EI S + R+ ++ L ++ ++ D G+ C A N AG + +
Sbjct: 126 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185
Query: 539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
L+++ PP R + L G + L+ + G PP W + L SG +Y+I
Sbjct: 186 SLKVKEPPVFRKKPHPVETLK---GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIM 242
Query: 599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
+ ++ I + AD GEYQ N +G +T+
Sbjct: 243 SENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 107 bits (270), Expect = 8e-26
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
A N G + S L V P F + H L+ V +++G P +
Sbjct: 173 EAHNAAGSAS---SSTSLKVK------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQ 223
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
VSW+KD E+ S ++ +I+++N ++++ I D GE +C A+N G + L+
Sbjct: 224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
Query: 544 A 544
A
Sbjct: 284 A 284
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 167 bits (424), Expect = 3e-47
Identities = 52/260 (20%), Positives = 78/260 (30%), Gaps = 56/260 (21%)
Query: 527 ATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNG 586
AT A S R P ++ P G + + + P T W +G
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQGPVAVY----TWEGNQVNITCEVFAYPSATISWFRDG 56
Query: 587 EPLTSGG--RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP 644
+ L S +I +T L ++ D G Y VN +G++ F++ D P
Sbjct: 57 QLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSS 116
Query: 645 PGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVF 704
P V + +
Sbjct: 117 PS-IDQVEPYSSTAQVQ------------------------------------------- 132
Query: 705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE---DTELMVSGLEPGWRYQFR 761
++ PE GG P+L Y E R G W E + + + GL+P Y R
Sbjct: 133 ---FDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR 189
Query: 762 ITAENVVGFSEPGPLSEPLT 781
+ A N G E SE T
Sbjct: 190 LAALNGKGLGEISAASEFKT 209
Score = 102 bits (257), Expect = 7e-25
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 11/116 (9%)
Query: 333 VGTD---LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRR 389
+G + V P P Q+ P S + ++++ PE GG P+L Y E R
Sbjct: 99 IGQESLEFILVQADTPSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRA 153
Query: 390 TGSPYWVRASPHMVE---DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 442
G W E + + + GL+P Y R+ A N G E SE T
Sbjct: 154 VGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 209
Score = 86.8 bits (215), Expect = 2e-19
Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 2/111 (1%)
Query: 438 SEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR 497
+ + R ++ E +V T +V P+ +SW++DG + SS
Sbjct: 4 AAASSALVPRGSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSN 63
Query: 498 RQR--IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
I S L + + D G CTA NR G + L P
Sbjct: 64 YSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTP 114
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 161 bits (409), Expect = 1e-45
Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 6/190 (3%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
+ +F + + E E +V P P VSW E+ + R + + L
Sbjct: 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNL 59
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKA--RLRLEAPPTIRLPKQYEDGLLFEMGEIIKL 568
I DEG +C A I + + PP I +P++ + GE +
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER-GEEMTF 118
Query: 569 KVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
+G P P W NG+ + +Y + ++ L + + +D G Y N G
Sbjct: 119 SCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAG 176
Query: 629 EDVASFLVTV 638
ED + V
Sbjct: 177 EDEKQAFLQV 186
Score = 67.5 bits (165), Expect = 6e-13
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT--SGGRYEITHTD 601
+ T R ++ F+ GE ++ ++ P P WL++ E +T S R+ + +
Sbjct: 1 SMLTFREVVSPQE---FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN 57
Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVAS--FLVTVTDRP---LPPGKAKVVMTLGK 656
NL+I + ++D G Y+ G ++ +V V P +P G+
Sbjct: 58 ---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE 114
Query: 657 SVTLS 661
+T S
Sbjct: 115 EMTFS 119
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 173 bits (440), Expect = 1e-44
Identities = 84/435 (19%), Positives = 139/435 (31%), Gaps = 89/435 (20%)
Query: 390 TGSP----YWVR-ASPHMVEDTELMVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPL 441
TG+P W++ ++ L + ++ G YQ N +E S L
Sbjct: 368 TGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGM-YQCF--VRNDRESAE---ASAEL 421
Query: 442 TVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRI 501
+ + P P +A + T V G PTP++SW DG +I ++ R ++
Sbjct: 422 KLGGRFDP---PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQV 478
Query: 502 -----VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYED 556
V + +S L I D G KC A ++ G + A+L + P IR ++
Sbjct: 479 GQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKA- 537
Query: 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA-RRAD 615
GE + + +AG P + W + L + ++ L I + R +D
Sbjct: 538 ---IVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNG---TLIIENVERNSD 591
Query: 616 RGEYQAHGVNSLGEDV-ASFLVTVTDRP--LPPGKAKVVMTLGKSVTLSWSEPEDDGGCK 672
+ Y N G S V V P +P + +G+ +TL S
Sbjct: 592 QATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCS--------- 642
Query: 673 IGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP 732
PG P I W G +
Sbjct: 643 -------------VPGGDL--P---------LNIDW----TLDGQAIS----------ED 664
Query: 733 YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
+ S + L + +E F A N+ G + + PL V P
Sbjct: 665 LGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF---TTPLNVY------VPP 715
Query: 793 SFIRALHDTTALEDE 807
+I D +
Sbjct: 716 RWILEPTDKAFAQGS 730
Score = 160 bits (405), Expect = 3e-40
Identities = 77/483 (15%), Positives = 134/483 (27%), Gaps = 110/483 (22%)
Query: 337 LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV 396
+ C+I V + W D +
Sbjct: 158 IKCLIPSFVADF---------------VEVVSWH---TDEEENYFPGAEYDGKY------ 193
Query: 397 RASPHMVEDTELMVSGLEPG-WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 455
++ EL + + P ++ ++ + ++ V + +A P
Sbjct: 194 ----LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249
Query: 456 I--RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS--TLI 511
+ T + +G P P WYK + + TLI
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI 309
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
I A + D G+ C N G + L + AP + ++ + G
Sbjct: 310 IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP---TQTVDFGRPAVFTCQ 366
Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631
G P T W+ +G+ + LRI ++ D+G YQ N
Sbjct: 367 YTGNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRESAE 416
Query: 632 ASFLVTVTDRPLPP----GKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPP 687
AS + + R PP + M G SV L C
Sbjct: 417 ASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLK---------CV-------------AG 454
Query: 688 GKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTEL 747
G P P I W G + + R +V + +V + L
Sbjct: 455 GNP--TP----------EISW----ELDGKK----IANNDRYQVGQYVTVNGDVV--SYL 492
Query: 748 MVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTAL 804
++ + G ++ A++ VG +E S L V +IR + +
Sbjct: 493 NITSVHANDGG---LYKCIAKSKVGVAE---HSAKLNVY-------GLPYIRQMEKKAIV 539
Query: 805 EDE 807
E
Sbjct: 540 AGE 542
Score = 151 bits (382), Expect = 1e-37
Identities = 50/245 (20%), Positives = 86/245 (35%), Gaps = 24/245 (9%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
A++ VG +E S L V +IR + + E + T V G P
Sbjct: 508 IAKSKVGVAE---HSAKLNVY-------GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDS 557
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALM-DEGEIKCTATNRAGHSITK-ARLR 541
+ W +D + +R+Q++ + TLII D+ C A N+ G+S ++
Sbjct: 558 IVWERDNRALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQ 614
Query: 542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHT 600
+ P I E ++G+ + L S+ G P W +G+ ++ +
Sbjct: 615 VMVLPRIIPFAFEE--GPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRV 672
Query: 601 DRYL-NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKVVMTLGK 656
R L I + G + H N G + + V P L P G
Sbjct: 673 GRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAF--AQGS 730
Query: 657 SVTLS 661
+
Sbjct: 731 DAKVE 735
Score = 130 bits (328), Expect = 5e-31
Identities = 46/227 (20%), Positives = 74/227 (32%), Gaps = 20/227 (8%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI-RALHDTTALEDEKVEFTVQVEGIPTP 482
A+N G+S G L + V P I A + A + + V G P
Sbjct: 598 VAKNQEGYSARGSLE--VQVMV------LPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLP 649
Query: 483 -KVSWYKDGFEIFSSRRQRIV-TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
+ W DG I S L I G C A N AGH L
Sbjct: 650 LNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPL 709
Query: 541 RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT 600
+ PP L + F G K++ G P P W + ++ +
Sbjct: 710 NVYVPPRWILEPTDKA---FAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK-DLKKS 765
Query: 601 DRYL----NLRISDARRADRGEYQAHGVNSLGEDVASF-LVTVTDRP 642
D L + + ++ + G Y +N +G +++ +++V
Sbjct: 766 DNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812
Score = 113 bits (283), Expect = 1e-25
Identities = 44/271 (16%), Positives = 74/271 (27%), Gaps = 45/271 (16%)
Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT-TALEDEKVEFTVQVEG 478
F A G S+ L + P F++ + E + G
Sbjct: 13 LFAAVALIACG-------SQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASG 65
Query: 479 IPTPKVSWYK-DGFEIFSSRRQRIVTDNDISTLIIHQAALMD------EGEIKCTATNRA 531
P P++ W + DG + R ++ + L+ D C A N+
Sbjct: 66 NPMPEIIWIRSDGTAVGDVPGLRQISSD--GKLVFPPFRAEDYRQEVHAQVYACLARNQF 123
Query: 532 GHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLK---VSMAGMPPPTARWLHNGE 587
G I++ +R E G +K S W + E
Sbjct: 124 GSIISRDVHVRAVVAQYYEADVNKEHV---IRGNSAVIKCLIPSFVADFVEVVSWHTDEE 180
Query: 588 PL-----TSGGRYEITHTDRYLNLRISDARRAD-RGEYQAHGVNSLGEDV---ASFLVTV 638
G+Y + + L I + D YQ + L + A+ V
Sbjct: 181 ENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLV 237
Query: 639 TDRPLPPGKAKVVMTL---------GKSVTL 660
P+ KVV ++ L
Sbjct: 238 ITEPISSAVPKVVSLAKFDMKTYSGSSTMAL 268
Score = 100 bits (251), Expect = 9e-22
Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 16/205 (7%)
Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV-LGYLVEHRRTGSPYWVRASPHMVED 405
P P + P+ T+ P D P+ + + ++ + + S
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGD--LPLNIDWTLDGQAISEDLGITTSRVGRRG 676
Query: 406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTAL 465
+ L + +E F A N+ G + + PL V P +I D
Sbjct: 677 SVLTIEAVEASHAGNFTCHARNLAGHQQF---TTPLNVY------VPPRWILEPTDKAFA 727
Query: 466 EDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN---DISTLIIHQAALMDEGE 522
+ + + +G P P+V+W K + + +DN + TL + +EG
Sbjct: 728 QGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGY 787
Query: 523 IKCTATNRAGHSITKAR-LRLEAPP 546
C A N G ++ + ++A
Sbjct: 788 YLCEAINGIGSGLSAVIMISVQAHH 812
Score = 81.5 bits (201), Expect = 8e-16
Identities = 36/310 (11%), Positives = 70/310 (22%), Gaps = 58/310 (18%)
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRL--EAPPTIRLPKQYEDGLLFEMGEIIK 567
+ + L A G A + P K+ + + F +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFL--KEPTNRIDFSNSTGAE 58
Query: 568 LKVSMAGMPPPTARWLH-NGEPLTSGGRYEITHTDRYL---NLRISDAR-RADRGEYQAH 622
++ +G P P W+ +G + +D L R D R Y
Sbjct: 59 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118
Query: 623 GVNSLGEDVA-SFLVTVTDRPLPPGK-AKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY 680
N G ++ V K + G S + C
Sbjct: 119 ARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIK---------C--------- 160
Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
P V + W D +
Sbjct: 161 -LIPSFVADF------------VEVVSW---HTDEEENYFPGAEYDGKY----------L 194
Query: 741 MVEDTELMVSGLEPG-WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI--RA 797
++ EL + + P ++ ++ + ++ V + +A P +
Sbjct: 195 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAK 254
Query: 798 LHDTTALEDE 807
T
Sbjct: 255 FDMKTYSGSS 264
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 162 bits (411), Expect = 1e-44
Identities = 45/225 (20%), Positives = 76/225 (33%), Gaps = 14/225 (6%)
Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI 479
+R A + G + T +F + + E E +V
Sbjct: 74 IYRCQATDAKG--------QTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSS 125
Query: 480 PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA- 538
P P VSW E+ + R + + L I DEG +C A I
Sbjct: 126 PAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGEIDFRD 184
Query: 539 -RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEI 597
+ + PP I +P++ + GE + +G P P W NG+ + +Y +
Sbjct: 185 IIVIVNVPPAISMPQKSFNATAER-GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL 243
Query: 598 THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
++ L + + +D G Y N GED + V +
Sbjct: 244 KGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQH 286
Score = 141 bits (358), Expect = 2e-37
Identities = 48/220 (21%), Positives = 84/220 (38%), Gaps = 14/220 (6%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
A +L E FT G P + G +I S++R + + S
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKL 568
L I+ A + D G +C AT+ G + L + T R + F+ GE ++
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR--EVVSP-QEFKQGEDAEV 118
Query: 569 KVSMAGMPPPTARWLHNGEPL--TSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
++ P P WL++ E + S R+ + + NL+I + ++D G Y+ G
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCEGRVE 175
Query: 627 LGEDV--ASFLVTVTDRP---LPPGKAKVVMTLGKSVTLS 661
++ +V V P +P G+ +T S
Sbjct: 176 ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 215
Score = 98.3 bits (245), Expect = 1e-22
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 17/154 (11%)
Query: 401 HMVEDTELMVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR 457
M+ + L + + G Y+ E P+
Sbjct: 148 AMLANNNLQILNINKSDEG-IYRCE--GRVEAR-------GEIDFRDIIVIVNVPPAISM 197
Query: 458 A--LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQA 515
+ TA E++ F+ + G P P +SW+++G I + + + N + L +
Sbjct: 198 PQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNI 255
Query: 516 ALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR 549
D G C ATN+AG +A L++
Sbjct: 256 INSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHH 289
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 151 bits (383), Expect = 9e-42
Identities = 50/205 (24%), Positives = 76/205 (37%), Gaps = 16/205 (7%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRI-VTDNDIST 509
P F R D T + F Q G P PK+ W K G ++ + R + I D S
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 510 LIIHQAALM-DEGEIKCTATNRAGHSITKARLR-------LEAPPTIRLPKQYEDGLLFE 561
L I DE +C A+N G RL PTI + Q + E
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVV---E 121
Query: 562 MGEIIKLKVSMAGMPPPTARWLHNGEPLT---SGGRYEITHTDRYLNLRISDARRADRGE 618
+ + +G P P W + P+ + GR + ++ L+I + +D+G+
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181
Query: 619 YQAHGVNSLGEDV-ASFLVTVTDRP 642
Y+ NS G A + V
Sbjct: 182 YECVATNSAGTRYSAPANLYVRGTK 206
Score = 99.5 bits (248), Expect = 9e-24
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 8/128 (6%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQ-RSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP 482
A N VG +S LTV + + P P+ G P P
Sbjct: 82 VASNNVGEIS---VSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP 138
Query: 483 KVSWYKDGFEIFSSR---RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KA 538
+++W+KD + +S R + + I L I Q+ D+G+ +C ATN AG + A
Sbjct: 139 EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPA 198
Query: 539 RLRLEAPP 546
L +
Sbjct: 199 NLYVRGTK 206
Score = 68.7 bits (168), Expect = 4e-13
Identities = 28/130 (21%), Positives = 42/130 (32%), Gaps = 15/130 (11%)
Query: 543 EAPPTI-RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD 601
E PP R P G + G P P W G+ +++ I D
Sbjct: 4 ETPPRFTRTPVD----QTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDD 59
Query: 602 RYLN-LRISDARRA-DRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKA--------KVV 651
+ LRI R D Y+ N++GE S +TV P V
Sbjct: 60 GSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKV 119
Query: 652 MTLGKSVTLS 661
+ ++ T+
Sbjct: 120 VERTRTATML 129
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 150 bits (380), Expect = 1e-41
Identities = 44/197 (22%), Positives = 75/197 (38%), Gaps = 15/197 (7%)
Query: 451 AAPSFI--RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
+ P+ + + TA E++ F+ + G P P +SW+++G I + + + N +
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--T 58
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKL 568
L + D G C ATN+AG +A L++ P I K + L
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNET----TYENGQVTL 114
Query: 569 KVSMAGMPPPTARWLHNGEPLT-------SGGRYEITHTDRYLNLRISDARRADRGEYQA 621
G P P W + T GR E+ +L I D + +D G Y
Sbjct: 115 VCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDC 174
Query: 622 HGVNSLGEDVASFLVTV 638
+ +G S + +
Sbjct: 175 EAASRIGGHQKSMYLDI 191
Score = 81.8 bits (202), Expect = 8e-18
Identities = 30/127 (23%), Positives = 43/127 (33%), Gaps = 17/127 (13%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
A N G E L V P I+ L + T E+ +V EG P P+
Sbjct: 76 RATNKAGEDE---KQAFLQVF------VQPHIIQ-LKNETTYENGQVTLVCDAEGEPIPE 125
Query: 484 VSWYKDGFEI-------FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536
++W + R + + S+L I L D G C A +R G
Sbjct: 126 ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQK 185
Query: 537 KARLRLE 543
L +E
Sbjct: 186 SMYLDIE 192
Score = 80.6 bits (199), Expect = 2e-17
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 3/118 (2%)
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
+ P I +P++ + E GE + +G P P W NG+ + +Y + ++
Sbjct: 1 SMPAISMPQKSFN-ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT- 58
Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
L + + +D G Y N GED + V +P VTL
Sbjct: 59 -ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLV 115
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 148 bits (375), Expect = 5e-41
Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 5/190 (2%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
A +L E FT G P + G +I S++R + + S L
Sbjct: 1 ALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 60
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLK 569
I+ A + D G +C AT+ G + L + T R F+ GE ++
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSP---QEFKQGEDAEVV 117
Query: 570 VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE 629
++ P P WL++ E +T+ NL+I + ++D G Y+ G
Sbjct: 118 CRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCEGRVEARG 176
Query: 630 DVASFLVTVT 639
++ + V
Sbjct: 177 EIDFRDIIVI 186
Score = 92.2 bits (229), Expect = 2e-21
Identities = 22/120 (18%), Positives = 35/120 (29%), Gaps = 9/120 (7%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
A + G + T +F + + E E +V P P
Sbjct: 76 QATDAKG--------QTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPA 127
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
VSW E+ + R + + L I DEG +C A I + +
Sbjct: 128 VSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 186
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 151 bits (384), Expect = 6e-41
Identities = 44/221 (19%), Positives = 75/221 (33%), Gaps = 14/221 (6%)
Query: 425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV 484
G ++ + + F A E E V P +
Sbjct: 81 VTAEDGTQSEATVN--VKIF------QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI 132
Query: 485 SWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE- 543
W G ++ + R + ++ + L I DEG +C A I +++
Sbjct: 133 IWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
Query: 544 -APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH--T 600
PPT++ + + G+ + L G P PT W +GEP+ + + H +
Sbjct: 192 NVPPTVQARQSIVNATANL-GQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS 250
Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
D L I + + D EY N GE AS + V +
Sbjct: 251 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
Score = 120 bits (302), Expect = 4e-30
Identities = 50/220 (22%), Positives = 74/220 (33%), Gaps = 18/220 (8%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPT-PKVSWYKDGFEIFSSRRQRIV---TDNDIS 508
E F QV G +SW+ E S +QRI D+D S
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
TL I+ A + D G KC T G +++ + F+ GE
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPT---PQEFKEGEDAV 119
Query: 568 LKVSMAGMPPPTARWLHNGEPL--TSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625
+ + PPT W H G + R+ + + L+I ++ D G Y+ G
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRI 176
Query: 626 SLGEDV--ASFLVTVTDRP---LPPGKAKVVMTLGKSVTL 660
++ V V P LG+SVTL
Sbjct: 177 LARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTL 216
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 147 bits (373), Expect = 2e-40
Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 29/207 (14%)
Query: 461 DTTALEDEKVEFTVQVEGI----------PTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
+ AL ++ EGI KV+W +G I S R + + L
Sbjct: 2 SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWL 61
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLF---------- 560
I++ D+G+ + L +A Q
Sbjct: 62 QINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLG 121
Query: 561 --------EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT-HTDRYLNLRISDA 611
+ G+ + L ++ G PPP WL N + L + R I+
Sbjct: 122 GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGV 181
Query: 612 RRADRGEYQAHGVNSLGEDVASFLVTV 638
AD G+Y N G + + F V+V
Sbjct: 182 STADSGKYGLVVKNKYGSETSDFTVSV 208
Score = 99.2 bits (247), Expect = 1e-23
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 1/120 (0%)
Query: 427 NVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSW 486
+ + E + L A T E + + T V G P P+VSW
Sbjct: 92 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 151
Query: 487 YKDGFEIFSSRRQRIVTD-NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
K+ + + + + + I+ + D G+ N+ G + + + P
Sbjct: 152 LKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 69.9 bits (171), Expect = 1e-13
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 563 GEIIKLKVSM-AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
E I+L + + W HNG + R + T + L+I++ D+G+Y
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 76
Query: 622 HGVNSLGEDVASFLVTVTDRPLPPGKAKVV 651
+ + ++ + + +
Sbjct: 77 ELFDGKTGHQKTVDLSGQAYDEAYAEFQRL 106
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 152 bits (386), Expect = 4e-40
Identities = 54/276 (19%), Positives = 92/276 (33%), Gaps = 27/276 (9%)
Query: 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA 425
TI W + + R ++ L +S L+PG +R +A
Sbjct: 152 TIHW----QKNQQDLNPIPGDSRVV-----------VLPSGALQISRLQPGDSGVYRCSA 196
Query: 426 ENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVS 485
N + + F++ + A+E + V G P P +
Sbjct: 197 RNPASTRTGNEAE--VRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFT 254
Query: 486 WYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
W + I ++ + S L+I D G C T + + A L + P
Sbjct: 255 WLRGEEVIQLRSKKYSLLGG--SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP 312
Query: 546 PTI-RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL 604
P P I+ + +++G P PT W+ NG+ + ++I
Sbjct: 313 PWFLNHPSNLY----AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS--- 365
Query: 605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
NLRI ++D G YQ N G +S + V
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 139 bits (351), Expect = 2e-35
Identities = 47/235 (20%), Positives = 77/235 (32%), Gaps = 21/235 (8%)
Query: 437 LSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-- 494
+S V A F+ TA + V +V G P P + W K+ ++
Sbjct: 110 ISRTAKVMV----AGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPI 165
Query: 495 -SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPK 552
R ++ L I + D G +C+A N A A +R+ + P +
Sbjct: 166 PGDSRVVVLPSG---ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQL 222
Query: 553 QYEDG---LLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRIS 609
+ ++ G+ L+ ++G PPP+ WL E + + NL IS
Sbjct: 223 YFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLIS 280
Query: 610 DARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKVVMTLGKSVTLS 661
+ D G Y AS +TV P P +
Sbjct: 281 NVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYA--YESMDIEFE 333
Score = 134 bits (339), Expect = 7e-34
Identities = 44/235 (18%), Positives = 73/235 (31%), Gaps = 24/235 (10%)
Query: 444 TYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIV 502
+ + F+ D + V E P + W KDG + R
Sbjct: 13 HHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQ 72
Query: 503 TDND----ISTLIIHQAALMDEGEIKCTATNRAGHSIT--KARLRLEAPPTIRLPKQYED 556
+ I ++ + DEG +C A+ SI A++ + P +
Sbjct: 73 QLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTE--- 129
Query: 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL---TSGGRYEITHTDRYLNLRISDARR 613
+ MG+ + LK + G P PT W N + L R + + L+IS +
Sbjct: 130 SITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG---ALQISRLQP 186
Query: 614 ADRGEYQAHGVNSLGEDVA-SFLVTVTDRPLPPGKAKVVM-------TLGKSVTL 660
D G Y+ N V + P + + GK L
Sbjct: 187 GDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVL 241
Score = 94.1 bits (234), Expect = 2e-20
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
S LTV P F+ + A E +EF V G P P
Sbjct: 293 VVTYKNENIS---ASAELTVL------VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPT 343
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
V+W K+G + S +IV S L I DEG +C A N AG++ + A+L +
Sbjct: 344 VNWMKNGDVVIPSDYFQIVGG---SNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400
Query: 544 AP 545
P
Sbjct: 401 KP 402
Score = 77.2 bits (190), Expect = 7e-15
Identities = 38/289 (13%), Positives = 68/289 (23%), Gaps = 62/289 (21%)
Query: 527 ATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP-PTARWLHN 585
+ S + G + L S P +W +
Sbjct: 3 WGSELESSHHHHHHGGRRSLHFVSEPS---DAVTMRGGNVLLNCSAESDRGVPVIKWKKD 59
Query: 586 GEPLTSGGRYEIT----HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
G L G + N+ S + D G YQ + S V
Sbjct: 60 GLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA 119
Query: 642 PLPPGKAK---VVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPS 698
++ + +G +V L C+ G P
Sbjct: 120 GPLRFLSQTESITAFMGDTVLLK---------CE-------------VIGDPMP------ 151
Query: 699 LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY 758
TI W + + R ++ L +S L+PG
Sbjct: 152 ------TIHW----QKNQQDLNPIPGDSRVV-----------VLPSGALQISRLQPGDSG 190
Query: 759 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDE 807
+R +A N + + F++ + A+E +
Sbjct: 191 VYRCSARNPASTRTGNEAE--VRILSDPGLHRQLYFLQRPSNVIAIEGK 237
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 150 bits (381), Expect = 1e-39
Identities = 47/234 (20%), Positives = 81/234 (34%), Gaps = 12/234 (5%)
Query: 410 VSGLEPGWRYQFRITAENVVG--FSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALED 467
V+ + Y++ TA+N P D A
Sbjct: 168 VTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAG 227
Query: 468 EKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS--TLIIHQAALMDEGEIKC 525
+ P +++K+G ++ + RI N S L+ DEG C
Sbjct: 228 DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTC 287
Query: 526 TATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH 584
N G +L + + P ++ E ++ + G+ + + + G+P P W H
Sbjct: 288 EVDNGVGKPQKHSLKLTVVSAPKYE--QKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH 345
Query: 585 NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
N +PL+ GR +T + L I + D+G Y N G+ LV V
Sbjct: 346 NAKPLSG-GRATVTDS----GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394
Score = 113 bits (285), Expect = 4e-27
Identities = 36/243 (14%), Positives = 67/243 (27%), Gaps = 34/243 (13%)
Query: 441 LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQ 499
L V P + E+ +EG K SW KDG
Sbjct: 1 LPVD------KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHN 54
Query: 500 RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGL 558
+ ++ +L+ + DEG +C A AG + ++ R P + +
Sbjct: 55 AALRKDE-GSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIAS--PAKTHEKT 111
Query: 559 LFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDRYL-----NLRISDAR 612
E G +L + P P W R NL +
Sbjct: 112 PIE-GRPFQLDCVLPNAYPKPLITWKKRLSGADPNADV-TDFDRRITAGPDGNLYFTIVT 169
Query: 613 RADR---GEYQAHGVNSLGED---VASFLVTVTDRPLPPGKAK---------VVMTLGKS 657
+ D +Y N+ ++ + + + + K + ++ G
Sbjct: 170 KEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDV 229
Query: 658 VTL 660
+
Sbjct: 230 TMI 232
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 148 bits (374), Expect = 2e-39
Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 17/214 (7%)
Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
P P F+ L + V +V I + WYKD EI + + I
Sbjct: 4 PFTGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGI 60
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
TL+I + + D G + + G ++ +L EA + + + + +K
Sbjct: 61 CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKK---IALSATDLK 117
Query: 568 LKVSMAGM----------PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRG 617
++ + G+ W HNG + R + T + L+I++ D+G
Sbjct: 118 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKG 177
Query: 618 EYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVV 651
+Y + + ++ + + +
Sbjct: 178 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRL 211
Score = 145 bits (366), Expect = 3e-38
Identities = 44/248 (17%), Positives = 74/248 (29%), Gaps = 38/248 (15%)
Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI 479
+ + ++ G + L A + + AL ++ EGI
Sbjct: 75 IYEVILKDDRGKDK---SRLKLVDE------AFKELMMEVCKKIALSATDLKIQSTAEGI 125
Query: 480 ----------PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529
KV+W +G I S R + + L I++ D+G+ +
Sbjct: 126 QLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFD 185
Query: 530 RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM------------------GEIIKLKVS 571
L +A Q G+ + L +
Sbjct: 186 GKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCN 245
Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEIT-HTDRYLNLRISDARRADRGEYQAHGVNSLGED 630
+ G PPP WL N + L S + R I+ AD G+Y N G +
Sbjct: 246 VWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE 305
Query: 631 VASFLVTV 638
+ F V+V
Sbjct: 306 TSDFTVSV 313
Score = 100 bits (250), Expect = 4e-23
Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 1/120 (0%)
Query: 427 NVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSW 486
+ + E + L A T E + + T V G P P+VSW
Sbjct: 197 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSW 256
Query: 487 YKDGFEIFSSRRQRIVTDND-ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
K+ + S + + + I+ + D G+ N+ G + + + P
Sbjct: 257 LKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 147 bits (373), Expect = 3e-39
Identities = 47/233 (20%), Positives = 77/233 (33%), Gaps = 17/233 (7%)
Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRS-PAAAPSFIRALHDTTALEDEKVEFTVQVEG 478
+ A+N VG + LTV + P+ P+ G
Sbjct: 78 VYECVAQNSVGEIT---VHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASG 134
Query: 479 IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK- 537
P P+++W+KD + S + L I + D+G+ +C ATN AG +
Sbjct: 135 NPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSP 194
Query: 538 ARLRL---EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR 594
A L + P + + + G + + G P P +W+ E LT
Sbjct: 195 ANLYVRVQNVAPRFSILPMSHEIMP---GGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD 251
Query: 595 YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGK 647
+ + D Y ++SLG A +TV P K
Sbjct: 252 MPVG------RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTK 298
Score = 141 bits (358), Expect = 3e-37
Identities = 48/225 (21%), Positives = 79/225 (35%), Gaps = 19/225 (8%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV-TDNDIST 509
P FI+ D + F Q G P P+V+W K G ++ S R + I ++ +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 510 LIIHQAALM-DEGEIKCTATNRAGHSITKARL-------RLEAPPTIRL-PKQYEDGLLF 560
L I DE +C A N G A+L P I + P+
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV----V 120
Query: 561 EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
E + + +G P P W + P+ R L+I + D+G+Y+
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 621 AHGVNSLGEDV-ASFLVTVTDRPLPP----GKAKVVMTLGKSVTL 660
NS G + + V + + P + G +V +
Sbjct: 181 CVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNI 225
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 142 bits (361), Expect = 5e-39
Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 8/186 (4%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
AP L AL +E F VE P P++SW ++ I + + +N
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG-QL 63
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKL 568
L I D+G CTA N G ++ L+++ P I P + G L
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPI---NVKIIEGLKAVL 120
Query: 569 KVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
+ G P P+ W+ L R + +LRI + ++ D G+Y+ NSLG
Sbjct: 121 PCTTMGNPKPSVSWIKGDSALRENSRIAV-LESG--SLRIHNVQKEDAGQYRCVAKNSLG 177
Query: 629 EDVASF 634
+
Sbjct: 178 TAYSKL 183
Score = 95.2 bits (237), Expect = 2e-22
Identities = 31/145 (21%), Positives = 48/145 (33%), Gaps = 12/145 (8%)
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHD 461
L + +E + TA N VG + P R +
Sbjct: 58 RENGQLLTILSVEDSDDGIYCCTANNGVG--------GAVESCGALQVKMKPKITRPPIN 109
Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG 521
+E K G P P VSW K + + R ++ +L IH D G
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG---SLRIHNVQKEDAG 166
Query: 522 EIKCTATNRAGHSITK-ARLRLEAP 545
+ +C A N G + +K +L +E
Sbjct: 167 QYRCVAKNSLGTAYSKLVKLEVEVF 191
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 148 bits (374), Expect = 1e-38
Identities = 58/241 (24%), Positives = 90/241 (37%), Gaps = 16/241 (6%)
Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE--PLTVTYQRSPAAAPSFI-R 457
L ++ E + A + + F S+ L++ + + APS +
Sbjct: 153 VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212
Query: 458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAAL 517
DT AL + V G P P++ W K S+ + ++ L I
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLD----GSQTSKWLSSE--PLLHIQNVDF 266
Query: 518 MDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP 577
DEG +C A N G + R+ + A P ++G ++ +G P
Sbjct: 267 EDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITD---TEADIGSDLRWSCVASGKPR 323
Query: 578 PTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT 637
P RWL +G+PL S R E++ LR S D G YQ N G AS +T
Sbjct: 324 PAVRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
Query: 638 V 638
V
Sbjct: 380 V 380
Score = 116 bits (293), Expect = 4e-28
Identities = 49/230 (21%), Positives = 71/230 (30%), Gaps = 27/230 (11%)
Query: 452 APSFIRALHDTTALE---DEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
P F T E +EKV T + P W +G E+ R
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-D 62
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
+I + D G +C ATN G ++ +A LR + D + G +
Sbjct: 63 LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEF--SAEERDPVKITEGWGVM 120
Query: 568 LKVSM-AGMPPPTARWLHNGEPL---TSGGRYEITHTDRYLNLRISDARRADRGEYQAHG 623
S P + RWL N P G R+ T NL I+ +D G Y
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG---NLYIAKTEASDLGNYSCFA 177
Query: 624 VNSLGEDVASFLVTVTDRPLPPGKAK-------------VVMTLGKSVTL 660
+ + S + L A+ G+ VTL
Sbjct: 178 TSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTL 227
Score = 105 bits (264), Expect = 2e-24
Identities = 42/251 (16%), Positives = 68/251 (27%), Gaps = 28/251 (11%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTP 482
A N G +S ++ + E V FT P
Sbjct: 80 VATNARGTV----VSREASLRFGFLQ---EFSAEERDPVKITEGWGVMFTCSPPPHYPAL 132
Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK----- 537
W + F F R L I + D G C AT+
Sbjct: 133 SYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKF 192
Query: 538 ARLRLEAPPTIRLPKQYEDGLLFEM----GEIIKLKVSMAGMPPPTARWLHNGEPLTSGG 593
++L L A + + + G+++ L+ G P P +W TS
Sbjct: 193 SQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK- 251
Query: 594 RYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKV 650
++ L I + D G Y+ N G D + + +P
Sbjct: 252 ---WLSSEP--LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVI--TDT 304
Query: 651 VMTLGKSVTLS 661
+G + S
Sbjct: 305 EADIGSDLRWS 315
Score = 91.1 bits (226), Expect = 2e-19
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 13/121 (10%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
AEN+ G + + A P ++ + DT A + ++ G P P
Sbjct: 275 EAENIKGRDT---YQGRIIIH------AQPDWLDVITDTEADIGSDLRWSCVASGKPRPA 325
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
V W +DG + S R + L + L D G +C A N+ G A L ++
Sbjct: 326 VRWLRDGQPLASQNRIEVSG----GELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Query: 544 A 544
A
Sbjct: 382 A 382
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 146 bits (370), Expect = 3e-38
Identities = 51/240 (21%), Positives = 84/240 (35%), Gaps = 12/240 (5%)
Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPA--AAPSFIRA 458
E L ++ +E + N V + PL + ++
Sbjct: 152 VSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQF 211
Query: 459 LHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALM 518
A + V+ G P P + W + + + + +R ++ L I
Sbjct: 212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSN---GILEIPNFQQE 268
Query: 519 DEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP 578
D G +C A N G ++ K +L A P + M E + + G P P
Sbjct: 269 DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIN---DIHVAMEESVFWECKANGRPKP 325
Query: 579 TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
T RWL NG+PL + R +I L I+ +D G YQ N G +S ++V
Sbjct: 326 TYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 123 bits (309), Expect = 3e-30
Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 24/230 (10%)
Query: 449 PAAAPSFIRALHDTT---ALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
P + P F++ E++KV+ + +V+G P P + W +G ++ R +
Sbjct: 2 PGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGE 564
S LI + D G +C ATN G ++ +A+L+ + + G+
Sbjct: 62 G-SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENF--KTRTRSTVSVRRGQ 118
Query: 565 IIKLK-VSMAGMPPPTARWLHNGEPL-TSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
+ L + W+ N P R+ T NL I+ ++D G Y
Sbjct: 119 GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG---NLYIAKVEKSDVGNYTCV 175
Query: 623 GVNSLGED---VASFLVTVTDRPLPPGKAKVVMT---------LGKSVTL 660
N++ + + + + + G +V L
Sbjct: 176 VTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL 225
Score = 112 bits (282), Expect = 1e-26
Identities = 45/254 (17%), Positives = 84/254 (33%), Gaps = 34/254 (13%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI-RALHDTTALEDEKVEFTVQV-EGIPT 481
A N G +S + + A +F R + + +
Sbjct: 81 IATNSFGTI----VSREAKLQF----AYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGE 132
Query: 482 PKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH-------- 533
+W + + + R+ + + L I + D G C TN +
Sbjct: 133 LSYAWIFNEYPSYQDNRRFVSQET--GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPT 190
Query: 534 --SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLT 590
+ + E P I + + E G +KL+ G P PT W +G+P+
Sbjct: 191 PLILRNDGVMGEYEPKIEVQFPET--VPAEKGTTVKLECFALGNPVPTILWRRADGKPIA 248
Query: 591 SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGK 647
R ++ L I + ++ D G Y+ NS G++VA +T +P
Sbjct: 249 RKARRHKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQII-- 302
Query: 648 AKVVMTLGKSVTLS 661
+ + + +SV
Sbjct: 303 NDIHVAMEESVFWE 316
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 143 bits (361), Expect = 9e-38
Identities = 32/241 (13%), Positives = 78/241 (32%), Gaps = 24/241 (9%)
Query: 420 QFRITAENVVGFSEPGPLSE---PLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV 476
+ + G + + E + +++ LE +V F +Q
Sbjct: 72 IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131
Query: 477 E-GIPTPKVSWYKDGFEIFSSRRQRIVTDND--ISTLIIHQAALMDEGEIKCTATNRAGH 533
E KV++ + EIF + ++ D + I + + + DEG +
Sbjct: 132 EKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT 191
Query: 534 SITKARLRLEAPPTIRLPKQYEDGLLFEM---------------GEIIKLKVSMAGMPPP 578
+ + L + ++ +++ + LK +A +
Sbjct: 192 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKE 251
Query: 579 TA-RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVT 637
T W + ++ +++ D L I++ + D G Y+ + G+D + +
Sbjct: 252 THIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV 309
Query: 638 V 638
Sbjct: 310 D 310
Score = 138 bits (349), Expect = 4e-36
Identities = 25/213 (11%), Positives = 65/213 (30%), Gaps = 13/213 (6%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
P + + + F P + SW KD S R + + + +
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK 59
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLF--------- 560
+ + D G C T+ G + + E + L +++ +
Sbjct: 60 MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEI 119
Query: 561 -EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT--DRYLNLRISDARRADRG 617
E G++ + ++ N + + G +Y++ + + + + D G
Sbjct: 120 LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 179
Query: 618 EYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKV 650
Y + + ++ ++ +A+
Sbjct: 180 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEF 212
Score = 85.8 bits (212), Expect = 3e-18
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 14/136 (10%)
Query: 420 QFRITAENVVGFSE----------PGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEK 469
+ ++ + E + P F+ L +
Sbjct: 180 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT-GECN 238
Query: 470 VEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT 528
V +V I + WYKD EI + + I TL+I + + D G +
Sbjct: 239 VLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEVILK 296
Query: 529 NRAGHSITKARLRLEA 544
+ G ++ +L EA
Sbjct: 297 DDRGKDKSRLKLVDEA 312
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 138 bits (350), Expect = 2e-37
Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 21/207 (10%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDND--I 507
F ++ LE +V F +Q E KV++ + EIF + ++ D + I
Sbjct: 1 GIDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM----- 562
+ + + DEG + + + L + ++ +++
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 563 ----------GEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLNLRISDA 611
+ LK +A + T W + ++ +++ D L I++
Sbjct: 121 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEF 178
Query: 612 RRADRGEYQAHGVNSLGEDVASFLVTV 638
+ D G Y+ + G+D + +
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 81.9 bits (202), Expect = 1e-17
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 14/136 (10%)
Query: 420 QFRITAENVVGFSE----------PGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEK 469
+ ++ + E + P F+ L +
Sbjct: 75 TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT-GECN 133
Query: 470 VEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT 528
V +V I + WYKD EI + + I TL+I + + D G +
Sbjct: 134 VLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEVILK 191
Query: 529 NRAGHSITKARLRLEA 544
+ G ++ +L EA
Sbjct: 192 DDRGKDKSRLKLVDEA 207
Score = 59.6 bits (144), Expect = 5e-10
Identities = 11/111 (9%), Positives = 35/111 (31%), Gaps = 5/111 (4%)
Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY- 603
P + E + E G++ + ++ N + + G +Y++
Sbjct: 3 DPFTKSELAVE---ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG 59
Query: 604 -LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMT 653
+ + + + D G Y + + ++ ++ +A+
Sbjct: 60 IIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQ 110
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 137 bits (347), Expect = 5e-37
Identities = 44/208 (21%), Positives = 73/208 (35%), Gaps = 18/208 (8%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI--FSSRRQRIVTDNDI 507
A P IR + F G P P + W K+G ++ SR + I
Sbjct: 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 508 STLIIHQAALM-DEGEIKCTATNRAGHSIT-KARLRL-------EAPPTIRLPKQYEDGL 558
S L I D+ +C A N G +++ A L + P I
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGT---R 120
Query: 559 LFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGE 618
+ E+G + + G P P W+ N + L+I ++R D+G+
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQGK 177
Query: 619 YQAHGVNSLGEDVAS-FLVTVTDRPLPP 645
Y+ NS+G + + + V R +
Sbjct: 178 YECVAENSMGTEHSKATNLYVKVRRVGT 205
Score = 96.0 bits (239), Expect = 2e-22
Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 11/158 (6%)
Query: 402 MVEDTELMVSGLEPGWRYQ----FRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSFI 456
+ + + + +EP + + AEN VG + LT+ ++PA P
Sbjct: 57 LEQPGGISILRIEPVRAGRDDAPYECVAENGVG--DAVSADATLTIYEGDKTPAGFPVIT 114
Query: 457 RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAA 516
+ V T + G PTP + W K+ ++ S + + D L I +
Sbjct: 115 QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSR 171
Query: 517 LMDEGEIKCTATNRAGHSITKA-RLRLEAPPTIRLPKQ 553
D+G+ +C A N G +KA L ++
Sbjct: 172 EEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHHH 209
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 136 bits (345), Expect = 1e-36
Identities = 52/219 (23%), Positives = 82/219 (37%), Gaps = 21/219 (9%)
Query: 440 PLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI--FSSR 497
PL YQ +P I D ++E +VEG P P + W+KDG + +
Sbjct: 2 PLAGQYQ-----SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK 56
Query: 498 RQRIVTDND--ISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRL-EAPPTIRLPKQ 553
R+ + + D GE C A NR G +++ A L++ R+ +
Sbjct: 57 SHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK 116
Query: 554 YEDGLLFEMGEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDRYL-----NLR 607
GE L+ G+P PT W+ +G PL + R NL
Sbjct: 117 ---DTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL 173
Query: 608 ISDARRADRGEYQAHGVNSLGEDVASF-LVTVTDRPLPP 645
IS+ D G Y+ N +G +S+ + V +
Sbjct: 174 ISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAH 212
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 142 bits (359), Expect = 1e-36
Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 11/221 (4%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPA-AAPSFIR---ALHDTTALEDEKVEFTVQVEGI 479
A + L V R A PSF+ L + G+
Sbjct: 190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGV 249
Query: 480 PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR 539
PTP ++WYK G ++ S + +N L I + D GE C A+N+ G
Sbjct: 250 PTPDIAWYKKGGDLPSDK---AKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS 306
Query: 540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH 599
+R++A P + L+ GE +L G P PT +W+ NGEPL S
Sbjct: 307 VRVKAAPYWLDEPK---NLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE 363
Query: 600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
+ D + + R YQ + N G +A+ V+V D
Sbjct: 364 VAGD-TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 123 bits (311), Expect = 3e-30
Identities = 62/368 (16%), Positives = 108/368 (29%), Gaps = 87/368 (23%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI-RALHDTTALEDEKVEFTVQV-EGIPT 481
A N G + LS + + + +P + L E + G+P+
Sbjct: 95 FARNKFGTA----LSNRIRLQV----SKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPS 146
Query: 482 PKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD-EGEIKCTATNRAGHS------ 534
P + W E + ++ N L L D + + C A H+
Sbjct: 147 PVIFWMSSSMEPITQDKRVSQGHN--GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNP 204
Query: 535 ----ITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
+ R E P+ P+ + G + L+ +G+P P W G L
Sbjct: 205 FTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLP 264
Query: 591 SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGK 647
S + + + ++ LRI++ D GEY N +G + V V P P
Sbjct: 265 SD-KAKFENFNK--ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEP-- 319
Query: 648 AKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIR 707
+++ G+ L C+ G P+ P T++
Sbjct: 320 KNLILAPGEDGRLV---------CRAN-------------GNPK--P----------TVQ 345
Query: 708 WEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP---GWRYQFRITA 764
W G P+ R V ++ + YQ
Sbjct: 346 W----MVNGEPLQSAPPNPNRE------------VAGDTIIFRDTQISSRA-VYQ--CNT 386
Query: 765 ENVVGFSE 772
N G+
Sbjct: 387 SNEHGYLL 394
Score = 116 bits (292), Expect = 7e-28
Identities = 44/244 (18%), Positives = 89/244 (36%), Gaps = 28/244 (11%)
Query: 440 PLTVTYQRSPAAAPSFIR-ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRR 498
P+ + Q P+ + + D + + + +G P P W ++ ++
Sbjct: 4 PMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKD 63
Query: 499 QRIVTDNDISTLIIHQ----AALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQ 553
R+ TL+I EGE +C A N+ G +++ + RL++ P PK+
Sbjct: 64 PRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLW--PKE 121
Query: 554 YEDGLLFEMGEIIKLKVS-MAGMPPPTARWLHNG-EPLTSGGRYEITHTDRYLNLRISDA 611
D ++ + G + L+ + G+P P W+ + EP+T R H +L S+
Sbjct: 122 NLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG---DLYFSNV 178
Query: 612 RRAD-RGEYQAHGVNSLGEDV---ASFLVTVTDRPLPPGKA-----------KVVMTLGK 656
D + +Y + + F + V + ++ G
Sbjct: 179 MLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGM 238
Query: 657 SVTL 660
+ L
Sbjct: 239 DLLL 242
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 144 bits (365), Expect = 1e-36
Identities = 40/238 (16%), Positives = 74/238 (31%), Gaps = 21/238 (8%)
Query: 438 SEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSS 496
SE + + + A P + E E+ T ++ + + +W ++ +
Sbjct: 197 SEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQ 256
Query: 497 RRQRIVTDND-----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP 551
+ D +TL I A + D G C A N G + L + I +
Sbjct: 257 EKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIF 316
Query: 552 KQYEDGLLFEMGEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYL-----N 605
+ GE + L V P P +W++ T +
Sbjct: 317 PMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSE 376
Query: 606 LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTL--GKSVTLS 661
L ++ + + G Y NS +F V V +P ++T + L
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP-------EILTYDRLVNGMLQ 427
Score = 121 bits (304), Expect = 9e-29
Identities = 50/349 (14%), Positives = 86/349 (24%), Gaps = 62/349 (17%)
Query: 316 NQAPLYVRLEEAITGLNVGTD--LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPE 373
+A V + +A L G + + C IK W+
Sbjct: 208 FKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSV-----------------YSTWK--- 247
Query: 374 YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE 433
+ L G + L +S F A N G +
Sbjct: 248 RENSQTKLQEKYNSWHHGDF-------NYERQATLTISSARVNDSGVFMCYANNTFGSAN 300
Query: 434 PGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK-VSWYKDGFE 492
++ L V F + E V+ V+ E P P+ W
Sbjct: 301 ---VTTTLEV---VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRT 354
Query: 493 IFSSRRQRIVTDNDI-----STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
++N+ S L + + + G +N ++ + + P
Sbjct: 355 FTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPE 414
Query: 548 IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN-- 605
I L ++ L+ AG P PT W + + LN
Sbjct: 415 I---------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSS 465
Query: 606 ----------LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP 644
I + G + N +G+ A F
Sbjct: 466 GPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKE 514
Score = 110 bits (277), Expect = 2e-25
Identities = 34/223 (15%), Positives = 60/223 (26%), Gaps = 15/223 (6%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
ED + P K + R + D +I
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP---KQYEDGLLFEMGEIIKL 568
+ C+ G S+ + L+ P + + L GE +
Sbjct: 173 KSVKRAYHRLCLHCSVDQ-EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTV 231
Query: 569 KVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLN-----LRISDARRADRGEYQAH 622
++ + W +Y H + L IS AR D G + +
Sbjct: 232 TCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCY 291
Query: 623 GVNSLGEDVASFLVTVTDRP----LPPGKAKVVMTLGKSVTLS 661
N+ G + + V D+ P V + G++V L
Sbjct: 292 ANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLI 334
Score = 87.8 bits (217), Expect = 5e-18
Identities = 43/263 (16%), Positives = 77/263 (29%), Gaps = 44/263 (16%)
Query: 410 VSGLEPGWRY--QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALED 467
+ G W + + G S+P S + PS D
Sbjct: 1 MRGARGAWDFLCVLLLLLRVQTGSSQP---SVSPGEP------SPPSIHPGKSDLIVRVG 51
Query: 468 EKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTA 527
+++ G V W + + +N + I +A + G+ CT
Sbjct: 52 DEIRLLCTDPG----FVKWTFEILDE--------TNENKQNEWITEKAEATNTGKYTCTN 99
Query: 528 TNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH--N 585
+ +SI + + P + L + L + ++ P T L
Sbjct: 100 KHGLSNSIY---VFVRDPAKLFLVDRS---LYGKEDNDTLVRCP-LTDPEVTNYSLKGCQ 152
Query: 586 GEPLTSGGRYEITHTDRYLNLRISDARRA-DRGEYQAHGVNSLGEDVASFLVTVTDRPLP 644
G+PL R+ + I +RA R G+ V S + RP
Sbjct: 153 GKPLPKDLRFIPDPK---AGIMIKSVKRAYHRLCLHCSVDQE-GKSVLSEKFILKVRPAF 208
Query: 645 PG-------KAKVVMTLGKSVTL 660
KA ++ G+ T+
Sbjct: 209 KAVPVVSVSKASYLLREGEEFTV 231
Score = 70.5 bits (172), Expect = 2e-12
Identities = 19/148 (12%), Positives = 36/148 (24%), Gaps = 29/148 (19%)
Query: 418 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE 477
Y F N + ++ + V P + T
Sbjct: 389 TYTF--LVSNSDVNAA---IAFNVYVNT------KPEIL------TYDRLVNGMLQCVAA 431
Query: 478 GIPTPKVSWYK-------DGFEIFSSRRQRIVTDND-----ISTLIIHQAALMDEGEIKC 525
G P P + WY + Q + + + I +A G ++C
Sbjct: 432 GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC 491
Query: 526 TATNRAGHSITKARLRLEAPPTIRLPKQ 553
A N G + + ++
Sbjct: 492 KAYNDVGKTSAYFNFAFKGNNKEQIHPH 519
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 147 bits (373), Expect = 2e-36
Identities = 56/386 (14%), Positives = 103/386 (26%), Gaps = 54/386 (13%)
Query: 442 TVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRI 501
+ + H EK+ + + + ++ +
Sbjct: 214 YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV 273
Query: 502 VTD----------NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP 551
D +STL I D+G C A++ +R+ P +
Sbjct: 274 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFG 333
Query: 552 KQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA 611
E + +GE +++ G PPP +W NG PL S + H L I +
Sbjct: 334 SGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV-----LTIMEV 388
Query: 612 RRADRGEYQAHGVNSLGEDVASFLVTVTDR------PLPPGKAKVVMTLGKSVTLSWSEP 665
D G Y N + ++ S +V++ G + TL+
Sbjct: 389 SERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLT---- 444
Query: 666 EDDGGCKIGNY----IVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG 721
C + + ++ + + ++ GG+ +
Sbjct: 445 -----CTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKI-- 497
Query: 722 YLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 781
V + + + VS ++ A N VG E
Sbjct: 498 -EVNKNQFALIEGKNKTVSTLVIQAANVSA-------LYKCEAVNKVGRGER---VISFH 546
Query: 782 VTYQRSPAAAPSFIRALHDTTALEDE 807
VT I D E E
Sbjct: 547 VT-------RGPEITLQPDMQPTEQE 565
Score = 138 bits (348), Expect = 1e-33
Identities = 52/246 (21%), Positives = 76/246 (30%), Gaps = 39/246 (15%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
A N VG E VT I D E E V +
Sbjct: 531 EAVNKVGRGER---VISFHVT-------RGPEITLQPDMQPTEQESVSLWCTADRSTFEN 580
Query: 484 VSWYKDGFEIFSSRRQRIVT--------------------DNDISTLIIHQAALMDEGEI 523
++WYK G + + T NDI + + A+L D+G+
Sbjct: 581 LTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDY 640
Query: 524 KCTATNRAGHSITKARLRLE----APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT 579
C A +R +L PTI E+ +GE I++ + +G PPP
Sbjct: 641 VCLAQDRKTKKRHCVVRQLTVLERVAPTIT--GNLEN-QTTSIGESIEVSCTASGNPPPQ 697
Query: 580 ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
W + E L + +R NL I R+ D G Y + LG +
Sbjct: 698 IMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
Query: 640 DRPLPP 645
Sbjct: 756 GAQEKT 761
Score = 129 bits (325), Expect = 1e-30
Identities = 42/274 (15%), Positives = 72/274 (26%), Gaps = 47/274 (17%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
A + + + V P A E+V + G P P+
Sbjct: 308 AASSGLMTKK-----NSTFVRVHEKPFV-AFGSGMESLVEATVGERVRIPAKYLGYPPPE 361
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
+ WYK+G + S+ + L I + + D G TN + L
Sbjct: 362 IKWYKNGIPLESNHTIK-----AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV 416
Query: 544 --APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLT---------- 590
PP I ++ G L ++ +PPP W E
Sbjct: 417 VYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSV 476
Query: 591 -----------------------SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
+ ++ + + Y+ VN +
Sbjct: 477 TNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKV 536
Query: 628 GEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
G VT P + + T +SV+L
Sbjct: 537 GRGERVISFHVTRGPEITLQPDMQPTEQESVSLW 570
Score = 107 bits (268), Expect = 6e-24
Identities = 27/250 (10%), Positives = 60/250 (24%), Gaps = 31/250 (12%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
P + P T + ++ T + +
Sbjct: 15 VETRAASVGLPSVSLDL------------PRLSIQKDILTIKANTTLQITCRGQ----RD 58
Query: 484 VSWYKDGFEIFSSRRQRIVTDND---ISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
+ W + S +R + +D TL I + D G KC S+ +
Sbjct: 59 LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118
Query: 541 RLEAPPTIRLPKQYEDGLLFEMGE----IIKLKVSMAGMPPPTARWLHNGEPLTSGGRYE 596
+ P I + + +I S++ + + G R
Sbjct: 119 QDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRIS 178
Query: 597 ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP-----GKAKVV 651
I + G + + + V +
Sbjct: 179 WDSKKG---FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIE 235
Query: 652 MTLGKSVTLS 661
+++G+ + L+
Sbjct: 236 LSVGEKLVLN 245
Score = 102 bits (254), Expect = 3e-22
Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 9/131 (6%)
Query: 418 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE 477
Y A++ +T AP+ L + T E +E +
Sbjct: 639 DYVCL--AQDRKTKKR---HCVVRQLTVL--ERVAPTITGNLENQTTSIGESIEVSCTAS 691
Query: 478 GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK 537
G P P++ W+KD + + N L I + DEG C A + G + +
Sbjct: 692 GNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSVLGCAKVE 749
Query: 538 ARLRLEAPPTI 548
A +E
Sbjct: 750 AFFIIEGAQEK 760
Score = 74.4 bits (182), Expect = 1e-13
Identities = 25/159 (15%), Positives = 41/159 (25%), Gaps = 19/159 (11%)
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
+ L+ C T A + L P + + K L + +++
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLD---LPRLSIQKDI---LTIKANTTLQITCR 54
Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDR---YLNLRISDARRADRGEYQAHGVNSLG 628
G WL S R E+T L I D G Y+ +
Sbjct: 55 --GQRDLD--WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDL 110
Query: 629 EDVASFLVTVTDRPLPPGKAK------VVMTLGKSVTLS 661
V V P + + K+V +
Sbjct: 111 ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIP 149
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 135 bits (340), Expect = 7e-36
Identities = 43/227 (18%), Positives = 71/227 (31%), Gaps = 20/227 (8%)
Query: 442 TVTYQRSPAAAPSFIRAL----HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR 497
V+ + AP + V+F G P P + W K+G E
Sbjct: 5 FVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 64
Query: 498 R-QRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQY-- 554
R N +LI+ D+G C N G L + R Q
Sbjct: 65 RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGL 124
Query: 555 -EDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE-----------PLTSGGRYEITHTDR 602
+ G ++ + P +W+ + E P ++ ++
Sbjct: 125 PANASTVV-GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAK 649
L + + AD GEY N +G+ S +TV + PG+ K
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
Score = 74.5 bits (183), Expect = 5e-15
Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 7/138 (5%)
Query: 531 AGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
A +++ AP K + +K + G P PT RWL NG+
Sbjct: 2 AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFK 61
Query: 591 SGGRYEITHTDRYL-NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP---- 645
R +L + +D+G Y N G ++ + V +R
Sbjct: 62 QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQ 121
Query: 646 --GKAKVVMTLGKSVTLS 661
A +G V
Sbjct: 122 AGLPANASTVVGGDVEFV 139
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 127 bits (320), Expect = 1e-34
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P + + T++W PP+ G + GYLVE+ GS WV A+ V
Sbjct: 8 PTSAPQHLTVE----DVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPV 63
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 453
E V L G R FR+ N+ G SEP L +P+T+ R +
Sbjct: 64 ERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI---RESGPSS 110
Score = 127 bits (320), Expect = 1e-34
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P + + T++W PP+ G + GYLVE+ GS WV A+ V
Sbjct: 8 PTSAPQHLTVE----DVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPV 63
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
E V L G R FR+ N+ G SEP L +P+T+ R +
Sbjct: 64 ERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI---RESGPSS 110
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 129 bits (326), Expect = 2e-34
Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 17/196 (8%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVS--WYKDGFEIFSSRRQRIVTDNDIS 508
P + + V + + W K+G E+ ++R+ +
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-----NASNM 56
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKL 568
I++ D GE C + A + ++A P I K+ E+ G+ +
Sbjct: 57 EYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENK---NEGQDAMM 112
Query: 569 KVSMAGMPPPTARWLHNGEPLT-----SGGRYEITHTDRYLNLRISD-ARRADRGEYQAH 622
G P P W + S GR+ I + + Y L I + D GEY+ +
Sbjct: 113 YCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECN 172
Query: 623 GVNSLGEDVASFLVTV 638
NS+G S ++ V
Sbjct: 173 ATNSIGSASVSTVLRV 188
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 126 bits (318), Expect = 2e-34
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
PP + S+ T+RW PP++ G + + GY++E+ G+ W+ A+ ++
Sbjct: 7 GTSPPTLLTVD----SVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLI 62
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ T+ ++GL + R+ A N G SEP S+P+ V + PS
Sbjct: 63 DKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILV-----KESGPS 108
Score = 126 bits (318), Expect = 2e-34
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
PP + S+ T+RW PP++ G + + GY++E+ G+ W+ A+ ++
Sbjct: 7 GTSPPTLLTVD----SVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLI 62
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ T+ ++GL + R+ A N G SEP S+P+ V + PS
Sbjct: 63 DKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILV-----KESGPS 108
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 131 bits (330), Expect = 3e-34
Identities = 43/234 (18%), Positives = 76/234 (32%), Gaps = 28/234 (11%)
Query: 449 PAAAPSFIRALH----DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRIVT 503
AP + R V F G PTP +SW K+G E R I
Sbjct: 8 DTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKL 67
Query: 504 DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFE-- 561
+ +L++ D G C N+ G L + R Q L
Sbjct: 68 RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAG---LPANQ 124
Query: 562 ---MGEIIKLKVSMAGMPPPTARWLHNGEP------------LTSGGRYEITHTDRYLNL 606
+G ++ + P +WL + E +T + + + L
Sbjct: 125 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184
Query: 607 RISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTL 660
R+++ D GEY N +G +F ++V P + ++ ++ ++
Sbjct: 185 RLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG---PRAAEEELVEADEAGSV 235
Score = 88.1 bits (218), Expect = 2e-19
Identities = 33/164 (20%), Positives = 49/164 (29%), Gaps = 22/164 (13%)
Query: 401 HMVEDTELMVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR 457
+ L++ + P G Y EN G + L V +RSP
Sbjct: 67 LRHQQWSLVMESVVPSDRG-NYTC--VVENKFGSIR---QTYTLDV-LERSPHRPILQAG 119
Query: 458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS------------RRQRIVTDN 505
+ TA+ VEF +V P + W K S + +
Sbjct: 120 LPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR 549
L + + D GE C ATN G + L + P
Sbjct: 180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAE 223
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 124 bits (313), Expect = 9e-34
Identities = 29/95 (30%), Positives = 42/95 (44%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
++ P + L DTT D +F V+ G P P W KDG I + ++ D
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF 63
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
L IH+ D G CT N AG + +L ++A
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 75.4 bits (186), Expect = 1e-16
Identities = 23/76 (30%), Positives = 35/76 (46%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
+ K V G P PTA W +G+ +T GG+Y+++ L I +D G Y
Sbjct: 21 DSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCT 80
Query: 623 GVNSLGEDVASFLVTV 638
NS G +S +T+
Sbjct: 81 VKNSAGSVSSSCKLTI 96
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 128 bits (323), Expect = 1e-33
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 17/203 (8%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS----RRQRIVTDND 506
P + D + E + EG PTP + WYK G + + R R++ +
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 507 ---ISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEA-PPTIRLPKQYEDGLLFE 561
++ + + DEG C A N G +++ A L + R ++
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPS---DVMVA 124
Query: 562 MGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
+GE ++ G P PT W +G PL L I+ R++D G+Y
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG---KLMITYTRKSDAGKYV 181
Query: 621 AHGVNSLGEDVASF-LVTVTDRP 642
G N +GE + +TV +RP
Sbjct: 182 CVGTNMVGERESEVAELTVLERP 204
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 133 bits (336), Expect = 1e-33
Identities = 46/306 (15%), Positives = 87/306 (28%), Gaps = 45/306 (14%)
Query: 337 LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV 396
+ C+I V + W D +
Sbjct: 123 IKCLIPSFVADF---------------VEVVSWH---TDEEENYFPGAEYDGKY------ 158
Query: 397 RASPHMVEDTELMVSGLEPG-WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 455
++ EL + + P ++ ++ + ++ V + ++AP
Sbjct: 159 ----LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT 214
Query: 456 IRALH-DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS--TLII 512
+ + + +G P P WYK + + TLII
Sbjct: 215 PALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 274
Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSM 572
A + D G+ C N G + L + AP + ++ + G
Sbjct: 275 KDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPP---TQTVDFGRPAVFTCQY 331
Query: 573 AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA 632
G P T W+ +G+ + LRI ++ D+G YQ N A
Sbjct: 332 TGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEA 381
Query: 633 SFLVTV 638
S + +
Sbjct: 382 SAELKL 387
Score = 108 bits (271), Expect = 3e-25
Identities = 48/259 (18%), Positives = 82/259 (31%), Gaps = 34/259 (13%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI---P 480
A N G +S + V A + ++ + +
Sbjct: 83 LARNQFGSI----ISRDVHVRA----VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADF 134
Query: 481 TPKVSWYKDGFEIF-----SSRRQRIVTDNDISTLIIHQAALMD-EGEIKCTATNRAGH- 533
VSW+ D E + + ++ L I + D +C +R
Sbjct: 135 VEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPEDGYKSYQCRTKHRLTGE 191
Query: 534 ---SITKARLRLEAPPTIRLPKQY---EDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE 587
S TK RL + P + P+ + L + I L G P P+ RW E
Sbjct: 192 TRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIE 251
Query: 588 PLTSGGRYEITHTDRYLN--LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP--- 642
T + + ++ L I DA D G+Y NS+G + ++TVT
Sbjct: 252 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK 311
Query: 643 LPPGKAKVVMTLGKSVTLS 661
+ P + G+ +
Sbjct: 312 IDP--PTQTVDFGRPAVFT 328
Score = 100 bits (251), Expect = 1e-22
Identities = 36/230 (15%), Positives = 65/230 (28%), Gaps = 29/230 (12%)
Query: 452 APSFIRALHDT-TALEDEKVEFTVQVEGIPTPKVSWYK-DGFEIFSSRRQRIVTDNDIST 509
P F++ + E + G P P++ W + DG + R ++ +
Sbjct: 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD--GK 60
Query: 510 LIIHQA------ALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEM 562
L+ + C A N+ G I+ +R E
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHV---IR 117
Query: 563 GEIIKLK---VSMAGMPPPTARWLHNGEPL-----TSGGRYEITHTDRYLNLRISDARRA 614
G +K S W + E G+Y + + L I +
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG---ELHIREVGPE 174
Query: 615 D-RGEYQAHGVNSLGEDV---ASFLVTVTDRPLPPGKAKVVMTLGKSVTL 660
D YQ + L + A+ V P+ + + K + L
Sbjct: 175 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLEL 224
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 133 bits (336), Expect = 2e-33
Identities = 36/251 (14%), Positives = 67/251 (26%), Gaps = 28/251 (11%)
Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
SP +V+ E ++ L R A N +G + T+ +
Sbjct: 187 SPAVVKKEEKVLHELFGT---DIRCCARNELGREC----TRLFTIDL------NQTPQTT 233
Query: 459 LHDTTALEDEKVEFT-VQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND------ISTLI 511
L E + V ++W + + + T + I
Sbjct: 234 LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
+ A D G C+++ S A + + I ED + E V
Sbjct: 294 VSSVARNDTGYYTCSSSKHPSQS---ALVTIVEKGFINATNSSED-YEIDQYEEFCFSVR 349
Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631
P W + + + D ++ + GEY H N +
Sbjct: 350 FKAYPQIRCTWTFSRKSFPCEQKG----LDNGYSISKFCNHKHQPGEYIFHAENDDAQFT 405
Query: 632 ASFLVTVTDRP 642
F + +
Sbjct: 406 KMFTLNIRSGT 416
Score = 122 bits (307), Expect = 1e-29
Identities = 19/210 (9%), Positives = 53/210 (25%), Gaps = 9/210 (4%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
+ + + V V+ W + + + + +++
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMV 106
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
I + GE + A + + + L + Y +M L
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPY----FRKMENQDALVCI 162
Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631
+P P W+ S + + + + N LG +
Sbjct: 163 SESVPEPIVEWVLCDSQGESCKEESPAVVKKE-EKVL---HELFGTDIRCCARNELGREC 218
Query: 632 ASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
++ ++ + +G+ + +
Sbjct: 219 TRLFTIDLNQTPQTTLPQLFLKVGEPLWIR 248
Score = 120 bits (301), Expect = 6e-29
Identities = 36/248 (14%), Positives = 72/248 (29%), Gaps = 31/248 (12%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
++ T+ + S + +E++ E +P P
Sbjct: 121 FIQSEATNY---------TILFTVSIRNTLLYTLRRPYFRKMENQDA-LVCISESVPEPI 170
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
V W + S + + ++H+ +I+C A N G T+
Sbjct: 171 VEWVLCDSQGESCKEESPAVVKKE-EKVLHEL---FGTDIRCCARNELGRECTRLFTIDL 226
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTD- 601
Q L ++GE + ++ ++ W + L G +E++
Sbjct: 227 NQTPQTTLPQ----LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYST 282
Query: 602 -----RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKVVMT 653
R L +S R D G Y + S LVT+ ++ +
Sbjct: 283 NRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDYEID 339
Query: 654 LGKSVTLS 661
+ S
Sbjct: 340 QYEEFCFS 347
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 123 bits (312), Expect = 2e-33
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P PPGKP L ++ R T++W PEY GG + Y+VE R + W++A+ +
Sbjct: 10 PIDPPGKPVPL----NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI 65
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVG-FSEPGPLSEPLTV 443
+ E VSGL Y+FR+ A+N G S P S+ +T
Sbjct: 66 LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITC 106
Score = 123 bits (312), Expect = 2e-33
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P PPGKP L ++ R T++W PEY GG + Y+VE R + W++A+ +
Sbjct: 10 PIDPPGKPVPL----NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNI 65
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVG-FSEPGPLSEPLTV 782
+ E VSGL Y+FR+ A+N G S P S+ +T
Sbjct: 66 LENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITC 106
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 122 bits (308), Expect = 5e-33
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
PPGP P+L +RW PP DGGSP+ Y VE
Sbjct: 8 PPGPCLPPRLQGRP---KAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--G 62
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ E VS L PG Y FR+ A N +GF + T +P + PS
Sbjct: 63 SEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT-----APGSGPS 108
Score = 122 bits (308), Expect = 5e-33
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
PPGP P+L +RW PP DGGSP+ Y VE
Sbjct: 8 PPGPCLPPRLQGRP---KAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--G 62
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ E VS L PG Y FR+ A N +GF + T +P + PS
Sbjct: 63 SEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT-----APGSGPS 108
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 125 bits (315), Expect = 1e-32
Identities = 35/220 (15%), Positives = 61/220 (27%), Gaps = 35/220 (15%)
Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
L + V+ + G P + W+K EI + S
Sbjct: 15 VPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT---------S 65
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTI---RLPKQYEDGLLFEM-- 562
LI + + D G C N ++ ++L + P + E L +
Sbjct: 66 ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125
Query: 563 -------GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRAD 615
G + L+ G P P +W N PLT + +
Sbjct: 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---------LYMVPYVDLEH 176
Query: 616 RGEYQAHGVNSLGEDVAS-FLVTVTDRPL---PPGKAKVV 651
+G Y H N + + + + P K +
Sbjct: 177 QGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216
Score = 85.3 bits (211), Expect = 1e-18
Identities = 16/136 (11%), Positives = 33/136 (24%), Gaps = 17/136 (12%)
Query: 424 TAENVVG--FSEPGPLS-----EPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV 476
N FS+ L E + + + +
Sbjct: 83 RVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA 142
Query: 477 EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536
G P P W+K+ + + ++ L +G C N +
Sbjct: 143 VGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDS 193
Query: 537 KA-RLRLEAPPTIRLP 551
K + ++ + P
Sbjct: 194 KKVEIIIDELNNLGHP 209
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 124 bits (313), Expect = 2e-32
Identities = 32/207 (15%), Positives = 60/207 (28%), Gaps = 21/207 (10%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI--- 507
+ + + + E+ V+ + G +P+V W D +
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62
Query: 508 -----STLIIHQAALMDEGEIKCTATNRAGHSITKARLRL--EAPPTIRLPKQYEDGLLF 560
+ + D G C + G+S + +++L PP+ P
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSK--PTVNIPSSAT 120
Query: 561 EMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL-------NLRISDAR 612
G L G PP W +G + + + ++ L
Sbjct: 121 I-GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179
Query: 613 RADRGEYQAHGVNSLGEDVASFLVTVT 639
+D GEY N G + S V +
Sbjct: 180 ASDTGEYSCEARNGYGTPMTSNAVRME 206
Score = 83.5 bits (206), Expect = 3e-18
Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 28/190 (14%)
Query: 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP---GWRYQFR 422
+ W+ +D G ++ T S T + + G Y
Sbjct: 35 RVEWK---FDQGDTTRLVCYNNKITASYEDR----VTFLPTGITFKSVTREDTG-TYTC- 85
Query: 423 ITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPT 481
G + + PS ++A + T +G P
Sbjct: 86 -MVSEEGG---NSYGEVKVKLIVL----VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPP 137
Query: 482 PKVSWYKDGFEIFSSRRQRIVTDN-------DISTLIIHQAALMDEGEIKCTATNRAGHS 534
+ +W+KDG + ++ + N L+ + D GE C A N G
Sbjct: 138 SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP 197
Query: 535 ITKARLRLEA 544
+T +R+EA
Sbjct: 198 MTSNAVRMEA 207
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 133 bits (335), Expect = 2e-32
Identities = 70/445 (15%), Positives = 133/445 (29%), Gaps = 60/445 (13%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P PP ++ +S L + + W P +L Y +++R + W + P
Sbjct: 198 KPNPPHNLSVI-NSEELSSIL-KLTWTNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDT 254
Query: 404 E--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSFIRALH 460
+ V L+P Y FRI G SE + TY+ P+ APSF +
Sbjct: 255 ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKID 314
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
+ V + + +P + + +E+ +R + + + ++ + D
Sbjct: 315 PSHTQGYRTV--QLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDR 372
Query: 521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA 580
T N G S + +P + + + P
Sbjct: 373 YLATLTVRNLVGKS---------DAAVLTIPA--------CDFQATHPVMDLKAFPKDNM 415
Query: 581 RWLHNGEPLTSGGRYEITHTDRYLNL-RISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
W+ P S +Y + I+D ++ D ++ + +L E +L+TVT
Sbjct: 416 LWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESK-CYLITVT 474
Query: 640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSL 699
G ++ + PP + +
Sbjct: 475 --------PVYADGPGSPESIKAYLKQA---------------PPSKGPTVRT----KKV 507
Query: 700 DRDVFTIRWE-PPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRY 758
++ + W+ P + Y + +R TE +S L Y
Sbjct: 508 GKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVD--SSHTEYTLSSLTSDTLY 565
Query: 759 QFRITAENVVGFSEPGPLSEPLTVT 783
R+ A G E T
Sbjct: 566 MVRMAAYTDEG---GKDGPEFTFTT 587
Score = 106 bits (266), Expect = 7e-24
Identities = 38/278 (13%), Positives = 69/278 (24%), Gaps = 67/278 (24%)
Query: 574 GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRAD-RGEYQAHGVNSLGEDVA 632
+ W N + I T ++ +D + + L ++V
Sbjct: 36 HVNANYIVWKTNHFTIPKEQYTIINRTA--SSVTFTDIASLNIQLTCNILTFGQLEQNVY 93
Query: 633 SFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIG------------------ 674
+ P P ++ GK + W + + +
Sbjct: 94 GITIISGLPPEKPKNLSCIVNEGKKMRCEW-DGGRETHLETNFTLKSEWATHKFADCKAK 152
Query: 675 -------------NYIVEY-FR-----------------------PPGPPGKPQLLPDSP 697
Y V P PP ++ +S
Sbjct: 153 RDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVI-NSE 211
Query: 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE--DTELMVSGLEPG 755
L + + W P +L Y +++R + W + P + V L+P
Sbjct: 212 ELSSIL-KLTWTNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPF 269
Query: 756 WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
Y FRI G SE + + PS
Sbjct: 270 TEYVFRIRCMKEDGKGYWSDWSEEASG---ITYEDRPS 304
Score = 66.2 bits (161), Expect = 3e-11
Identities = 52/360 (14%), Positives = 86/360 (23%), Gaps = 77/360 (21%)
Query: 472 FTVQVEGIPTPKVSW-------YKDGFEIFSSRRQR------IVTDNDISTLIIHQAALM 518
+ V + W + F + S D S + +
Sbjct: 109 LSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYF 168
Query: 519 DEGEIKCTATNRAGH---SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM 575
E+ A N G + P + + S
Sbjct: 169 VNIEVWVEAENALGKVTSDHINFDPVYKVKP--------------NPPHNLSVINSEELS 214
Query: 576 PPPTARW----LHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631
W + + L +Y I +Y R D +
Sbjct: 215 SILKLTWTNPSIKSVIIL----KYNI----QY--------RTKDASTWSQIPPEDTASTR 258
Query: 632 ASFLVTVTDRPLPPGKA-----KVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGP 686
+SF V L P + + GK WSE + I RP
Sbjct: 259 SSFTVQD----LKPFTEYVFRIRCMKEDGKGYWSDWSEEA--------SGITYEDRPSKA 306
Query: 687 PGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
P + S + + W+ P ++ +L Y V R S + V T
Sbjct: 307 PSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----NYTVNAT 362
Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALE 805
+L + RY +T N+VG + ++A L
Sbjct: 363 KL--TVNLTNDRYLATLTVRNLVG---KSDAAVLTIPACDFQATHPVMDLKAFPKDNMLW 417
Score = 63.9 bits (155), Expect = 2e-10
Identities = 16/103 (15%), Positives = 27/103 (26%), Gaps = 10/103 (9%)
Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWE-PPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
PP + + ++ + W+ P + Y + +R
Sbjct: 494 APPSKGPTVRT----KKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVD- 548
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
TE +S L Y R+ A G E T
Sbjct: 549 -SSHTEYTLSSLTSDTLYMVRMAAYTDEG---GKDGPEFTFTT 587
Score = 62.7 bits (152), Expect = 4e-10
Identities = 27/173 (15%), Positives = 49/173 (28%), Gaps = 13/173 (7%)
Query: 342 KKPPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASP 400
+P P + S + + W+ P ++ +L Y V R S
Sbjct: 301 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----N 356
Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 460
+ V T+L + RY +T N+VG + ++A
Sbjct: 357 YTVNATKL--TVNLTNDRYLATLTVRNLVG---KSDAAVLTIPACDFQATHPVMDLKAFP 411
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIH 513
L VE+T E + + W + + T +
Sbjct: 412 KDNMLW---VEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRG 461
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 133 bits (334), Expect = 4e-32
Identities = 73/513 (14%), Positives = 149/513 (29%), Gaps = 58/513 (11%)
Query: 329 TGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHR 388
G P P + + ++W ++ + Y+V+ R
Sbjct: 145 CGHTCQVPKTLYKGVPLKPRKELRFTELQSG----QLEVKWSSK-FNISIEPVIYVVQRR 199
Query: 389 RTGSPYWVRASP------HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 442
+ D + ++ + P YQFR+ A NV G S+
Sbjct: 200 WNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFR 259
Query: 443 VTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQ-----VEGIPTP--KVSW---YKDGFE 492
+ S AP+ +R L ++T D V T+ IP KV W
Sbjct: 260 SSKDPSAPPAPANLR-LANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSL 318
Query: 493 IFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPK 552
+ + +++R TD +++I+ + + ++ A G + K+ +
Sbjct: 319 VPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSA---KVSLHFTSTH 375
Query: 553 QYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDAR 612
+ ++ + R L G P G+ ++ + +
Sbjct: 376 ATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRY 435
Query: 613 RADRGEYQAHGVNSLGEDVASFLVT---VTDRPLPPG-------KAKVVMTLGKSVTLSW 662
+ G + +S + + + L + + K+ + +
Sbjct: 436 HVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFF 495
Query: 663 SEPEDDGGCKIGNYIVEYFRPPGP-----PGKPQLLPDSPSLDRDVFTI--RWEPPEYDG 715
+ P + + G KP+ L S + T W+ + +
Sbjct: 496 TTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANL 555
Query: 716 GSPVLGYLVEHRRTGSPYWVRASPHMV---------EDTELMVSGLEPGWRYQFRITAEN 766
P+ G+ V + + P+ + + L V L P Y+ +
Sbjct: 556 YQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLT 615
Query: 767 VVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 799
G GP + T P PS H
Sbjct: 616 PGG---EGPATIKTFRT----PELPPSSAHRSH 641
Score = 79.2 bits (194), Expect = 3e-15
Identities = 59/432 (13%), Positives = 114/432 (26%), Gaps = 78/432 (18%)
Query: 343 KPPGPPGKPQLLPDSPSLDRDV-FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
P P +L + + D V TI W+ PE + PV Y V S + +
Sbjct: 265 SAPPAPANLRLANSTVNSDGSVTVTIVWDLPE-EPDIPVHHYKVFWSWMVSSKSLVPTKK 323
Query: 402 MVE------DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 455
+++ L+P Y + A G + L T +
Sbjct: 324 KRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQL 383
Query: 456 IRALHDTTALE----------DEKVEFTVQVEGIPTPKVSWYKDGFEI---FSSRRQRIV 502
++ + +V +G KV W K + R
Sbjct: 384 VKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEA 443
Query: 503 TDNDISTLIIHQAALMDEGEIKCT-------------ATNRAGHSITKARLRLEAPPTIR 549
++ +T + + E I HS + PP
Sbjct: 444 CAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKA-EAVFFTTPPCSA 502
Query: 550 LPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT---------SGGRYEITHT 600
L + + L +A +A ++ +T + +T
Sbjct: 503 LKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTG- 561
Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKA-KVVMT------ 653
+ + ++ R + + S + + S +T L P ++ +
Sbjct: 562 --F-QVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGG 618
Query: 654 LGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEY 713
G + ++ PE PP + L P ++P
Sbjct: 619 EGPATIKTFRTPEL---------------PPSSAHRSHLKHRHPH--------HYKPSPE 655
Query: 714 DGGSPVLGYLVE 725
G P+ L+
Sbjct: 656 RYGKPIPNPLLG 667
Score = 33.0 bits (74), Expect = 0.72
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 8/45 (17%)
Query: 342 KKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
+ PP + L P ++P G P+ L+
Sbjct: 631 ELPPSSAHRSHLKHRHPH--------HYKPSPERYGKPIPNPLLG 667
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 119 bits (301), Expect = 4e-32
Identities = 27/99 (27%), Positives = 39/99 (39%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
+ P F+R + + E V G P P V W K G ++ +S R D
Sbjct: 9 DQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAE 68
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
L++ A D G C A N AG + A + + PP
Sbjct: 69 HGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 78.2 bits (193), Expect = 2e-17
Identities = 24/80 (30%), Positives = 33/80 (41%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
G +LK + G PPP W G+ L + R L ++ A D G Y
Sbjct: 28 GAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 87
Query: 623 GVNSLGEDVASFLVTVTDRP 642
N+ GE A+ VTV + P
Sbjct: 88 ARNAAGEAYAAAAVTVLEPP 107
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 122 bits (307), Expect = 6e-32
Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 17/193 (8%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT--DNDIS 508
A + A T + + V+ VEG+ P + W KDG + + + I + I
Sbjct: 1 AGLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
L + D G C + I++ L +E P + +D L +
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFT--VEPKD-LAVPPNAPFQ 117
Query: 568 LKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
L G P P T W + L ++ + N
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIGG-------PAPSPSVLNVTGVT--QSTMFSCEAHNL 168
Query: 627 LGEDVA-SFLVTV 638
G + + V +
Sbjct: 169 KGLASSRTATVHL 181
Score = 74.8 bits (184), Expect = 2e-15
Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 18/116 (15%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP- 482
E+ +S+P+ +T + P F D + + + + G P P
Sbjct: 78 QVEDGGE----TEISQPVWLTVE----GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPV 129
Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
+ W++ + S +++ + C A N G + ++
Sbjct: 130 TIVWWRGT---------TKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRT 176
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 122 bits (307), Expect = 8e-32
Identities = 42/194 (21%), Positives = 66/194 (34%), Gaps = 13/194 (6%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKDGFEIFSSRRQRIV---TDNDIS 508
E F QV G +SW+ E S +QRI D+D S
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
TL I+ A + D G KC T G +++ + F+ GE
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP---QEFKEGEDAV 119
Query: 568 LKVSMAGMPPPTARWLHNGEPL--TSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625
+ + PPT W H G + R+ + + L+I ++ D G Y+ G
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRI 176
Query: 626 SLGEDVASFLVTVT 639
++ + V
Sbjct: 177 LARGEINFKDIQVI 190
Score = 92.2 bits (229), Expect = 2e-21
Identities = 19/120 (15%), Positives = 32/120 (26%), Gaps = 9/120 (7%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
G + V F A E E V P
Sbjct: 80 VVTAEDG----TQSEATVNVKIF----QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPT 131
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
+ W G ++ + R + ++ + L I DEG +C A I +++
Sbjct: 132 IIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 131 bits (330), Expect = 1e-31
Identities = 39/244 (15%), Positives = 70/244 (28%), Gaps = 29/244 (11%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
+N + S+P+ + P + T + + P +
Sbjct: 360 GIQNELSVDH----SDPVILNVLYGP---DDPTISPSYTYYRPGVNLSLSCHAASNPPAQ 412
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
SW DG I L I + G C A N A +
Sbjct: 413 YSWLIDG---------NIQQHT--QELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461
Query: 544 APPTIRLPKQYEDGLL-FEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
+ P + E + + T W NG+ L R ++++ +R
Sbjct: 462 VSAELPKPSISSNNSKPVEDKDAVAFTCE-PEAQNTTYLWWVNGQSLPVSPRLQLSNGNR 520
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVA-SFLVTVTDRP----LPPGKAKVVMTLGKS 657
L + + R D Y NS+ + + + V P + P + G +
Sbjct: 521 T--LTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSY--LSGAN 576
Query: 658 VTLS 661
+ LS
Sbjct: 577 LNLS 580
Score = 128 bits (322), Expect = 1e-30
Identities = 43/230 (18%), Positives = 69/230 (30%), Gaps = 22/230 (9%)
Query: 438 SEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR 497
+E T ++ P I + + + + V FT + E W+ + + S
Sbjct: 97 NEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSP 155
Query: 498 RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYED 556
R ++ N TL + D KC N + L + P P
Sbjct: 156 RLQLSNGN--RTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDA--PTISPL 211
Query: 557 GLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADR 616
+ GE + L A PP W NG S L I + +
Sbjct: 212 NTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ-----------ELFIPNITVNNS 260
Query: 617 GEYQAHGVNSLGEDVASFLVTVTDRPLPP-----GKAKVVMTLGKSVTLS 661
G Y NS + + T+T PP + +V L+
Sbjct: 261 GSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALT 310
Score = 126 bits (318), Expect = 5e-30
Identities = 41/218 (18%), Positives = 64/218 (29%), Gaps = 24/218 (11%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
A N + T+T S I + + + + V FT + E T
Sbjct: 444 QANNSASGHS---RTTVKTITV--SAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT- 497
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLR- 541
W+ +G + S R ++ N TL + D C N + + L
Sbjct: 498 YLWWVNGQSLPVSPRLQLSNGN--RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV 555
Query: 542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTD 601
L P T + + G + L A P P W NG P
Sbjct: 556 LYGPDTPIISPPDSS---YLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQV------- 605
Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
L I+ + G Y N S + ++T
Sbjct: 606 ----LFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639
Score = 124 bits (312), Expect = 3e-29
Identities = 40/246 (16%), Positives = 73/246 (29%), Gaps = 33/246 (13%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
+N V S+ + + P + + +T+ E + + P +
Sbjct: 182 ETQNPVS----ARRSDSVILNVLYGP---DAPTISPLNTSYRSGENLNLSCHAASNPPAQ 234
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
SW+ +G S+ L I + + G C A N +
Sbjct: 235 YSWFVNGTFQQST-----------QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283
Query: 544 -----APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
P I E + + L W N + L R +++
Sbjct: 284 VYAEPPKPFITSNNSNP----VEDEDAVALTCEPEIQNTTY-LWWVNNQSLPVSPRLQLS 338
Query: 599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFLVTVTDRPLPP--GKAKVVMTLG 655
+ +R L + R D G Y+ N L D ++ V P P + G
Sbjct: 339 NDNR--TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPG 396
Query: 656 KSVTLS 661
+++LS
Sbjct: 397 VNLSLS 402
Score = 105 bits (262), Expect = 3e-23
Identities = 33/224 (14%), Positives = 62/224 (27%), Gaps = 30/224 (13%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI------------- 507
E ++V V SWYK + + V
Sbjct: 8 PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67
Query: 508 ---STLIIHQAALMDEGEIKCTATNRAG----HSITKARLRLEAPPTIRLPKQYEDGLLF 560
++L+I D G + P+I
Sbjct: 68 YPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKP----V 123
Query: 561 EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
E + + T W N + L R ++++ +R L + + R D Y+
Sbjct: 124 EDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYK 180
Query: 621 AHGVNSLGEDV-ASFLVTVTDRPLPPGKAKVVMTL--GKSVTLS 661
N + S ++ V P P + + + G+++ LS
Sbjct: 181 CETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLS 224
Score = 72.7 bits (178), Expect = 4e-13
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 18/121 (14%)
Query: 425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV 484
+N V + S+P+T+ P + I + D++ L + + P+P+
Sbjct: 539 IQNSVSANR----SDPVTLDVLYGP---DTPIISPPDSSYLSGANLNLSCHSASNPSPQY 591
Query: 485 SWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
SW +G + L I + + G C +N A +
Sbjct: 592 SWRINGIPQQHT-----------QVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV 640
Query: 545 P 545
Sbjct: 641 S 641
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 123 bits (311), Expect = 7e-31
Identities = 44/239 (18%), Positives = 65/239 (27%), Gaps = 20/239 (8%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR----ALHDTTALEDEKVEFTVQVEGI 479
+ S AP + R V F G
Sbjct: 91 SVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGN 150
Query: 480 PTPKVSWYKDGFEIFSSRR-QRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
PTP +SW K+G E R I + +L++ D G C N+ G
Sbjct: 151 PTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTY 210
Query: 539 RLRLEAPPTIRLPKQYEDG--LLFEMGEIIKLKVSMAGMPPPTARWLH----NGEPLTSG 592
L + R Q +G ++ + P +WL NG +
Sbjct: 211 TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD 270
Query: 593 GRYEIT---------HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
G +T L + + D GEY NS+G S + V
Sbjct: 271 GTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329
Score = 123 bits (310), Expect = 8e-31
Identities = 42/245 (17%), Positives = 64/245 (26%), Gaps = 34/245 (13%)
Query: 447 RSPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
R+ + VE + G P W KDG + S R +
Sbjct: 3 RAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP-- 60
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSIT---------------------KARLRLEA 544
L + A+ D G C +
Sbjct: 61 --QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118
Query: 545 PPTIRLPKQYEDGLL-FEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
P P++ + LL ++ + AG P P+ WL NG R
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 604 L-NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP------GKAKVVMTLGK 656
+L + +DRG Y N G ++ + V +R A LG
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 238
Query: 657 SVTLS 661
V
Sbjct: 239 DVEFH 243
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 124 bits (311), Expect = 7e-31
Identities = 36/248 (14%), Positives = 61/248 (24%), Gaps = 25/248 (10%)
Query: 438 SEPLTVTYQRSPAAA---PSFIRALHDTTALEDEKVEFT-------VQVEGIPTPKVSWY 487
++P T+ AA R LE E V + P ++W+
Sbjct: 1 ADPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWH 60
Query: 488 KDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
K+ + L + A D G CT N + LR+
Sbjct: 61 KNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTD 120
Query: 548 IRLPKQYEDGLLFEMGEII----KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
LP +L + L +W + L
Sbjct: 121 AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEK-FLSVRGT 179
Query: 604 LNLRISDARRADRGEYQAHGVNSLGED------VASFLVTVTDRPLPP----GKAKVVMT 653
+L + D D G Y+ + + P + +
Sbjct: 180 THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISAS 239
Query: 654 LGKSVTLS 661
LG +T+
Sbjct: 240 LGSRLTIP 247
Score = 89.7 bits (222), Expect = 2e-19
Identities = 43/239 (17%), Positives = 69/239 (28%), Gaps = 38/239 (15%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVE---FTVQVEGIP 480
T N + +S L V + A FI T + +
Sbjct: 99 TTRNASYCDK---MSIELRV--FENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKT 153
Query: 481 TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
K+ WYKD + + + + L++H AL D G +C T
Sbjct: 154 DVKIQWYKDSLLLDKDNEKFLSVRGT-THLLVHDVALEDAGYYRCVLTFAHEGQQYNITR 212
Query: 541 RLE---------APPTIRLPKQYEDGLLFEMGEIIKL--KVSMA-GMPPPTARW-LHNGE 587
+E P I P + +G + + KV + G P T W N
Sbjct: 213 SIELRIKKKKEETIPVIISPLKTIS---ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDT 269
Query: 588 PLTS---------GGRYEITHTDRYL---NLRISDARRADRG-EYQAHGVNSLGEDVAS 633
+ S G R E + + L R D +++ N+L
Sbjct: 270 HIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR 328
Score = 61.2 bits (148), Expect = 6e-10
Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 19/136 (13%)
Query: 424 TAENVVGFSEPGPLSEPLTVT-YQRSPAAAPSFIRALHDTTALEDEKVEFTVQV---EGI 479
+ ++ + + ++ P I L +A ++ +V G
Sbjct: 198 VLTFAHE-GQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGT 256
Query: 480 PTPKVSWYK----------DGFEIFSSRRQRIVTDND---ISTLIIHQAALMDEG-EIKC 525
P + W+ G + RQ +N+ LI D + KC
Sbjct: 257 PLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKC 316
Query: 526 TATNRAGHSITKARLR 541
N + ++
Sbjct: 317 VVHNTLSFQTLRTTVK 332
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 116 bits (292), Expect = 8e-31
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P P L +++W P + Y++E S Y +
Sbjct: 7 GPSMPASPVLT----KAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD-G 61
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
ED V L +Y+F++ A N G S P + E T P + PS
Sbjct: 62 EDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT-----CPDSGPS 107
Score = 116 bits (292), Expect = 8e-31
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P P L +++W P + Y++E S Y +
Sbjct: 7 GPSMPASPVLT----KAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD-G 61
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
ED V L +Y+F++ A N G S P + E T P + PS
Sbjct: 62 EDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT-----CPDSGPS 107
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 114 bits (288), Expect = 2e-30
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 440 PLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ 499
P T+ AP + + F + V+ PT +V WY +G E+ S +
Sbjct: 2 PFTLD------HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKI 55
Query: 500 RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
+ + TL I D G + TN G + A L +
Sbjct: 56 HYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 76.2 bits (188), Expect = 6e-17
Identities = 22/78 (28%), Positives = 32/78 (41%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
G+ + +++ P +W HNG L + T+T L L I D D G Y+A
Sbjct: 23 GQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV 82
Query: 623 GVNSLGEDVASFLVTVTD 640
N GE + VT
Sbjct: 83 CTNYKGEASDYATLDVTG 100
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 114 bits (288), Expect = 2e-30
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV-TDND 506
S P F++A D T E + +V G+PTP +SW DG + +++ +N
Sbjct: 5 SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
+ +LII D G C ATNRAG + L + A +
Sbjct: 65 VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
Score = 76.3 bits (188), Expect = 8e-17
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT-DRYLNLRISDARRADRGEYQA 621
G++ ++ ++G+P P W +G+P+ +++ + +L I D G Y
Sbjct: 24 GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTC 83
Query: 622 HGVNSLGEDVASFLVTVTDRPLPPG 646
N G++ S + V + P
Sbjct: 84 IATNRAGQNSFSLELVVAAKESGPS 108
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 115 bits (289), Expect = 3e-30
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS 399
+++ P P P + R + + W P +DG SP++ Y++E +P+ V +
Sbjct: 13 RVRQLPHAPEHPVATLSTVE-RRAI-NLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLA 69
Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ T + V GL P YQFR+ A N VG + +E +++ P + PS
Sbjct: 70 SVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL-----PESGPS 119
Score = 114 bits (287), Expect = 5e-30
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P P + R + + W P +DG SP++ Y++E +P+ V +
Sbjct: 17 LPHAPEHPVATLSTVE-RRAI-NLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDP 73
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ T + V GL P YQFR+ A N VG + +E +++ P + PS
Sbjct: 74 KATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSL-----PESGPS 119
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 118 bits (296), Expect = 4e-30
Identities = 35/213 (16%), Positives = 56/213 (26%), Gaps = 22/213 (10%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS---- 508
S A D E+E ++ T G +P+V W + +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 509 ----TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE--APPTIRLPKQYEDGLLFEM 562
+ D GE C + G + + + L PP+ +
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISV--PSSVTI- 118
Query: 563 GEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL--------NLRISDARR 613
G L G PP W +G + + + +L
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178
Query: 614 ADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG 646
D GEY N G + S + L G
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVG 211
Score = 83.1 bits (205), Expect = 5e-18
Identities = 30/190 (15%), Positives = 58/190 (30%), Gaps = 23/190 (12%)
Query: 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA 425
+ W+ + GS + + + +PY R + + S + ++
Sbjct: 32 RVEWK---FVQGSTT-ALVCYNSQITAPYADR---VTFSSSGITFSSVTRKDNGEYTCMV 84
Query: 426 ENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPKV 484
G + +T PS ++ + T +G P +
Sbjct: 85 SEEGG---QNYGEVSIHLTVL----VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEY 137
Query: 485 SWYKDGFEIFSSRRQ--------RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536
SW+KDG + ++ + D LI D GE C A N G ++
Sbjct: 138 SWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR 197
Query: 537 KARLRLEAPP 546
++A
Sbjct: 198 SEAAHMDAVE 207
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 115 bits (290), Expect = 5e-30
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Query: 438 SEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR 497
L + P P F + + D +E F +VEG P P+V W+KD + SR
Sbjct: 27 DAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESR 86
Query: 498 RQRIVTDND-ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR 549
+I D + +L I + D+ + C A N G + A L +E
Sbjct: 87 HFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEG 139
Score = 72.6 bits (178), Expect = 5e-15
Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 6/136 (4%)
Query: 515 AALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP----KQYEDGLLFEMGEIIKLKV 570
+ G + N A L A + K D + E G +
Sbjct: 5 SGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVE-GSAARFDC 63
Query: 571 SMAGMPPPTARWLHNGEPLTSGGRYEITHTDR-YLNLRISDARRADRGEYQAHGVNSLGE 629
+ G P P W + P+ ++I + + +L IS+ D +Y VNSLGE
Sbjct: 64 KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123
Query: 630 DVASFLVTVTDRPLPP 645
+ + V
Sbjct: 124 ATCTAELLVETMGKEG 139
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 113 bits (284), Expect = 6e-30
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT-DNDISTL 510
AP + T + F V+V G P P+ WYK+G +I S R ++++ L
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
+I D I A N AG + + A L ++A
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 66.5 bits (163), Expect = 1e-13
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 5/102 (4%)
Query: 541 RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR-YEITH 599
+EAP + G +V + G P P W NG + R Y
Sbjct: 2 SMEAPKIFERIQSQT----VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP 57
Query: 600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
D L I D D +N GE + + V +
Sbjct: 58 EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 113 bits (285), Expect = 7e-30
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Query: 444 TYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI-FSSRRQRIV 502
+ AP FI LE + V+ Q+ IP PK+ W ++ + F++ R +
Sbjct: 7 HHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLY 66
Query: 503 TDND-ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP 551
DN TL+I D G +A N AG + RL + A P LP
Sbjct: 67 QDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTLP 116
Score = 68.6 bits (168), Expect = 4e-14
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 5/113 (4%)
Query: 532 GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT- 590
GH + P Q + E G+ +KL+ ++ +PPP W N E +
Sbjct: 2 GHHHHHHSHEHKRAPMFIYKPQ--SKKVLE-GDSVKLECQISAIPPPKLFWKRNNEMVQF 58
Query: 591 SGGRYEITHTDR-YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
+ R + + + L I D + D G Y VN G + + VT RP
Sbjct: 59 NTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARP 111
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 113 bits (285), Expect = 7e-30
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 447 RSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRIVTDN 505
+ AP F L E V FT +V G P PK+ W+KDG +I S I D
Sbjct: 3 SGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL 62
Query: 506 D-ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
D +L + L D+G A N G RL ++A +
Sbjct: 63 DGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105
Score = 71.2 bits (175), Expect = 4e-15
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR--YLNLRISDARRADRGEYQ 620
G + +AG P P W +G+ ++ + D +L + + D G Y
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYT 82
Query: 621 AHGVNSLGEDVASFLVTVTDRPLPPG 646
N G + + V P
Sbjct: 83 IMAANPQGRISCTGRLMVQAVNSGPS 108
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 112 bits (281), Expect = 2e-29
Identities = 23/97 (23%), Positives = 34/97 (35%)
Query: 444 TYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT 503
+ A + T E E F+ +G P P V+W + G + +S R ++ T
Sbjct: 6 HHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT 65
Query: 504 DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
ST I DEG N G + L
Sbjct: 66 TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102
Score = 75.5 bits (186), Expect = 1e-16
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
GE + G P PT WL G+ L++ R+++T T IS + +D G Y
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVV 88
Query: 623 GVNSLGEDVASFLVTV 638
NS G+ A F +T+
Sbjct: 89 VENSEGKQEAEFTLTI 104
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 112 bits (281), Expect = 4e-29
Identities = 35/157 (22%), Positives = 55/157 (35%), Gaps = 47/157 (29%)
Query: 626 SLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPG 685
S G AS + + DRP PP K+ G++V L+W+
Sbjct: 2 SSGSSGASIDIQIIDRPGPPQIVKIEDVWGENVALTWT---------------------- 39
Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
PP+ DG + + GY ++ S W H T
Sbjct: 40 ------------------------PPKDDGNAAITGYTIQKADKKSMEWFTVIEH-YHRT 74
Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 782
++ L G Y FR+ +EN+ G SE +++ V
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATMTKESAV 111
Score = 105 bits (265), Expect = 4e-27
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 335 TDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY 394
+ I PGPP ++ + + + W PP+ DG + + GY ++ S
Sbjct: 8 ASIDIQIIDRPGPPQIVKIE----DVWGENVALTWTPPKDDGNAAITGYTIQKADKKSME 63
Query: 395 WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443
W H T ++ L G Y FR+ +EN+ G SE +++ V
Sbjct: 64 WFTVIEH-YHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAV 111
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 110 bits (278), Expect = 5e-29
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT-DNDI 507
P FI+ + + E +V G+P P VSWY +G + S +++ + +
Sbjct: 2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGL 61
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
+LI D G C A NRAG + +L + A
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 71.6 bits (176), Expect = 2e-15
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR-YLNLRISDARRADRGEYQA 621
G ++ ++G+P P W NG + S +++ +++ +L R +D G Y
Sbjct: 20 GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYAC 79
Query: 622 HGVNSLGEDVASFLVTVTDR 641
N GE + + V +
Sbjct: 80 VAKNRAGEATFTVQLDVLAK 99
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 118 bits (296), Expect = 7e-29
Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 15/197 (7%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
P+ + + + + V QVEG + W E ++ + + +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSL-GLTLA 217
Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSM 572
+ + ++ + C A N G + ++ + P +++L + S+
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHT-------AVEMHHWCIPFSV 270
Query: 573 AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN-------LRISDARRADRGEYQAHGVN 625
G P P+ RWL NG L + N LR++ + G Y N
Sbjct: 271 DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 330
Query: 626 SLGEDVASFLVTVTDRP 642
G+ AS + D P
Sbjct: 331 PFGQASASIMAAFMDNP 347
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 110 bits (278), Expect = 8e-29
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-YWVRASP 739
PP P +P + + + W P +GG P+ + VE+++ W+ A+
Sbjct: 15 LSPPEAPDRPTIS----TASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATS 69
Query: 740 HM-VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ + ++GLE G Y+FR+ A N++G SEP S P V + PS
Sbjct: 70 AIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVV-----SGSGPS 119
Score = 110 bits (278), Expect = 9e-29
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-YWVRASPHM 402
PP P +P + + + W P +GG P+ + VE+++ W+ A+ +
Sbjct: 17 PPEAPDRPTIS----TASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAI 71
Query: 403 -VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ ++GLE G Y+FR+ A N++G SEP S P V + PS
Sbjct: 72 PPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVV-----SGSGPS 119
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 110 bits (276), Expect = 8e-29
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW---VRASPH 401
P P Q+ P S + ++++ PE GG P+L Y E R G W +
Sbjct: 7 PSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 61
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 442
+ + + GL+P Y R+ A N G E SE T
Sbjct: 62 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
Score = 110 bits (276), Expect = 8e-29
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW---VRASPH 740
P P Q+ P S + ++++ PE GG P+L Y E R G W +
Sbjct: 7 PSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 61
Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 781
+ + + GL+P Y R+ A N G E SE T
Sbjct: 62 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 110 bits (277), Expect = 1e-28
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 13/116 (11%)
Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW---VRA 737
P P Q+ P S + ++++ PE GG P+L Y E R G W
Sbjct: 5 SSGPSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 59
Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ + + + GL+P Y R+ A N G E SE T P PS
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ-----PVREPS 110
Score = 110 bits (277), Expect = 1e-28
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 13/114 (11%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW---VRASP 400
P P Q+ P S + ++++ PE GG P+L Y E R G W +
Sbjct: 7 GPSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 61
Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ + + GL+P Y R+ A N G E SE T P PS
Sbjct: 62 EASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ-----PVREPS 110
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 120 bits (302), Expect = 2e-28
Identities = 21/211 (9%), Positives = 54/211 (25%), Gaps = 11/211 (5%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
+ + + V V+ W + + + + +++
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMV 106
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS 571
I + GE + A + + + L + Y +M L
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPY----FRKMENQDALVCI 162
Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631
+P P W+ S + + + N LG +
Sbjct: 163 SESVPEPIVEWVLCDSQGESCKEES----PAVVKKEEKVLHELFGTDIRCCARNELGREC 218
Query: 632 AS-FLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
F + + P ++ + +G+ + +
Sbjct: 219 TRLFTIDLNQTPQTTLP-QLFLKVGEPLWIR 248
Score = 119 bits (300), Expect = 3e-28
Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 33/249 (13%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
++ + +++ + R + + AL E +P P
Sbjct: 121 FIQSEATNYT---ILFTVSIRNTLLYTLRRPYFRKMENQDALV-------CISESVPEPI 170
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA-RLRL 542
V W + S + + ++H+ +I+C A N G T+ + L
Sbjct: 171 VEWVLCDSQGESCKEESPAV-VKKEEKVLHEL---FGTDIRCCARNELGRECTRLFTIDL 226
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEIT--- 598
P LP+ L ++GE + ++ + W + L G +E++
Sbjct: 227 NQTPQTTLPQ-----LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281
Query: 599 ---HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP---LPPGKAKVVM 652
R L +S R D G Y + S LVT+ ++ +
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDYEI 338
Query: 653 TLGKSVTLS 661
+ S
Sbjct: 339 DQYEEFCFS 347
Score = 104 bits (261), Expect = 2e-23
Identities = 36/292 (12%), Positives = 76/292 (26%), Gaps = 51/292 (17%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
F + WE + + +E + M+ VS + + +
Sbjct: 258 FGLTWE---LENKA------LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCS 308
Query: 425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH---DTTALEDEKVEFTVQVEGIPT 481
+ S +T+ FI A + D + E+ F+V+ + P
Sbjct: 309 SSKHPSQSAL------VTIV-------EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQ 355
Query: 482 PKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
+ +W ++ ++ ++ GE A N L
Sbjct: 356 IRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
Query: 542 LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH-------NGEPLTSGGR 594
+ P + + G P P+ W E +T G
Sbjct: 412 IRRKPQV-----------LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVW 460
Query: 595 YEITHTDRY----LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
+ + + ++ + + NSLG + L+
Sbjct: 461 NRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 512
Score = 61.3 bits (148), Expect = 1e-09
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 28/140 (20%)
Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI 479
++ AEN L + P + E + + +G
Sbjct: 392 EYIFHAENDDAQFT---KMFTLNIRR------KPQVLA--------EASASQASCFSDGY 434
Query: 480 PTPKVSWYKDG-----------FEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT 528
P P +W K +++ + R V +S+ ++ + + +KC A
Sbjct: 435 PLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494
Query: 529 NRAGHSITKARLRLEAPPTI 548
N G S L P
Sbjct: 495 NSLGTSCETILLNSPGPFPF 514
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 108 bits (272), Expect = 3e-28
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRIVTDNDIST 509
A P+F +L D + E + V +++V+G P P VSW ++ + RR + +
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
L I A D G C A N G +ARL +
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVRG 98
Score = 66.9 bits (164), Expect = 1e-13
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLT-SGGRYEITHTDRYLNLRISDARRADRGEYQA 621
G+ + + + + G P P WL N +P+ R+ LRI A R D G Y
Sbjct: 20 GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTC 79
Query: 622 HGVNSLGEDVASFLVTV 638
VN G + V
Sbjct: 80 KAVNEYGARQCEARLEV 96
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 111 bits (280), Expect = 4e-28
Identities = 34/196 (17%), Positives = 61/196 (31%), Gaps = 15/196 (7%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTP--KVSWYKDGFEIFSSRRQRIVTDNDISTL 510
P + E + + W + F +F + +R L
Sbjct: 9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNL 68
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARL--------RLEAPPTIRLPKQYEDGLLFEM 562
I D+G C ++ + ++ R P + Q++D
Sbjct: 69 YIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM- 127
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
G+ + L+ G P P RW EP+ S + L+I + + D G Y+
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGA----VLKIFNIQLEDEGIYECE 183
Query: 623 GVNSLGEDVASFLVTV 638
N G+D + V
Sbjct: 184 AENIRGKDKHQARIYV 199
Score = 88.4 bits (219), Expect = 5e-20
Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 5/122 (4%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPA-AAPSFIRALHDTTALEDEKVEFTVQVEGIPTP 482
+ PL +R+ + D AL + V G P P
Sbjct: 84 FVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP 143
Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542
+ W K + S+ I T + L I L DEG +C A N G +AR+ +
Sbjct: 144 DIRWRKVLEPMPSTA--EISTSG--AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Query: 543 EA 544
+A
Sbjct: 200 QA 201
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 108 bits (271), Expect = 6e-28
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
PGPP KPQ+ + ++ T+ W+P G P Y++E + + V
Sbjct: 15 LPGPPSKPQVT----DVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVANHV 69
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 452
+ T V GL P Y F + A N G S+P P+S+P+ T P++
Sbjct: 70 KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVR-TQDSGPSSG 117
Score = 108 bits (271), Expect = 6e-28
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
PGPP KPQ+ + ++ T+ W+P G P Y++E + + V
Sbjct: 15 LPGPPSKPQVT----DVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVANHV 69
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 791
+ T V GL P Y F + A N G S+P P+S+P+ T P++
Sbjct: 70 KTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVR-TQDSGPSSG 117
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 112 bits (282), Expect = 2e-27
Identities = 34/228 (14%), Positives = 64/228 (28%), Gaps = 22/228 (9%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI-PTP 482
T + L V A S+ + T +E ++ +
Sbjct: 69 TELEDPMAGS---TTIHLYV-----KDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKD 120
Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA---- 538
VS ++G + + II +A ++D C S +
Sbjct: 121 SVSLMREGGRQVLRKTVYFFSPWR--GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLK 178
Query: 539 -RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE---PLTSGGR 594
PP I+L L+ GE ++ S L G+ +
Sbjct: 179 VNRVHPEPPQIKLEPS---KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSD 235
Query: 595 YEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
++ + + L ++ D G Y N +G A+ V +
Sbjct: 236 FQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
Score = 93.5 bits (232), Expect = 6e-21
Identities = 32/219 (14%), Positives = 55/219 (25%), Gaps = 24/219 (10%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
AP + + E V G V W ++ ++ STL
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLD-----PESPGSTLT 54
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKL--K 569
A + G +CT T L ++ P + G+ L
Sbjct: 55 TRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLL--AQEVTVVEGQEAVLPCL 112
Query: 570 VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ--AHGVNSL 627
++ + + G R I A+ D Y VN
Sbjct: 113 IT-DPALKDSVSLMREGGRQVLRKTVYFFSPWR--GFIIRKAKVLDSNTYVCKTM-VNGR 168
Query: 628 GEDVASFLVTVTDRPLPP-----GKAKVVMTLGKSVTLS 661
+ V P +K+V G++ +
Sbjct: 169 ESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIV 207
Score = 88.1 bits (218), Expect = 4e-19
Identities = 15/119 (12%), Positives = 27/119 (22%), Gaps = 3/119 (2%)
Query: 435 GPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG---F 491
S + + R P + E + K G
Sbjct: 169 ESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKL 228
Query: 492 EIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRL 550
EI + + + L ++ D G C A+N G ++
Sbjct: 229 EIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHHHH 287
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 106 bits (266), Expect = 3e-27
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 441 LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR 500
LTV AP+ L + T E +E + G P P++ W+KD +
Sbjct: 3 LTVL----ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--G 56
Query: 501 IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI 548
IV + L I + DEG C A + G + +A +E
Sbjct: 57 IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104
Score = 69.3 bits (170), Expect = 2e-14
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
GE I++ + +G PPP W + E L + D NL I R+ D G Y
Sbjct: 25 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL--KDGNRNLTIRRVRKEDEGLYTCQ 82
Query: 623 GVNSLGEDVASFLVTVTDRPLPP 645
+ LG +
Sbjct: 83 ACSVLGCAKVEAFFIIEGAQEKT 105
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 106 bits (266), Expect = 3e-27
Identities = 22/100 (22%), Positives = 34/100 (34%)
Query: 447 RSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND 506
S ++ P I+ D E VE +V G +W K +I S ++ +
Sbjct: 2 SSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN 61
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
S L I A G N+ G + L + P
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101
Score = 101 bits (253), Expect = 2e-25
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
+ P I Q+ + GE ++L + G P T W+ + + ++ +++
Sbjct: 5 SSGPQII---QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN 61
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
L I AR+ G Y N LG A +TV D+P PP
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPP 104
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 106 bits (266), Expect = 3e-27
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 527 ATNRAGHSITKARLR-LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHN 585
++ +G +R + PP IRLP+ + ++GE + L V G P P W
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
Query: 586 GEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
G PL + R + +D + A R+D GEY+ +D A+ + V ++
Sbjct: 62 GAPLDT-SRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
Score = 89.0 bits (221), Expect = 3e-21
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 7/120 (5%)
Query: 430 GFSEPGPLSEPLTVTYQRSPAAAPSFIRALH---DTTALEDEKVEFTVQVEGIPTPKVSW 486
G L++P+T+ R A P H E++ V +G P P+V W
Sbjct: 2 SSGSSGTLAQPVTI---REIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVW 58
Query: 487 YKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
K G + + R + T + + + QAA D GE + + R+R+
Sbjct: 59 TKGGAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 105 bits (264), Expect = 3e-27
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR--IVTDND 506
P P D + E + + G PTP+V+W G +I S + R I +D
Sbjct: 2 PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
++TLII D G + N G + + +
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 74.7 bits (184), Expect = 2e-16
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTS--GGRYEITHTDRYLNLRISDARRADRGEYQ 620
G+++ + + G P P W G + S GR+ I +TD L I D ++ D G Y
Sbjct: 20 GKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYT 79
Query: 621 AHGVNSLGEDVASFLVTVTD 640
N G D A+ + +
Sbjct: 80 LSLGNEFGSDSATVNIHIRS 99
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 105 bits (265), Expect = 4e-27
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-YWVRASPHM 402
PG P KP + + F I W+PP+ +GG+ + Y+VE + W
Sbjct: 17 KPGIPVKPSVKGK---IHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS-- 71
Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 453
E + L PG Y+ R+ + G S SE L V +
Sbjct: 72 GATREHLCDRLNPGCFYRLRVYCISDGGQSAV---SESLLVQTPAVSGPSS 119
Score = 105 bits (265), Expect = 4e-27
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-YWVRASPHM 741
PG P KP + + F I W+PP+ +GG+ + Y+VE + W
Sbjct: 17 KPGIPVKPSVKGK---IHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS-- 71
Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
E + L PG Y+ R+ + G S SE L V +
Sbjct: 72 GATREHLCDRLNPGCFYRLRVYCISDGGQSAV---SESLLVQTPAVSGPSS 119
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 108 bits (271), Expect = 5e-27
Identities = 34/207 (16%), Positives = 59/207 (28%), Gaps = 29/207 (14%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRI---------V 502
F+ + T Q++ P+V W +DG + + +
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 503 TDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTI-RLPKQYEDGLLF 560
+S L I L D G+ +C ++ + LE P P+
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRT----V 118
Query: 561 EMGEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEY 619
L G P P WL + PL + + + L + +
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRS-----LHVPGLN--KTSSF 171
Query: 620 QAHGVNSLGEDV-ASFLVTVTDRPLPP 645
N+ G + +TV LP
Sbjct: 172 SCEAHNAKGVTTSRTATITV----LPQ 194
Score = 76.1 bits (187), Expect = 8e-16
Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 28/185 (15%)
Query: 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP---GWRYQFR 422
+ W G + + +T P + ++L ++ L+ G +YQ
Sbjct: 34 EVHW----LRDGQILELA--DSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG-QYQ-- 84
Query: 423 ITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP 482
S+P V + P F+ D T + + Q +G P P
Sbjct: 85 CLVFLGHQTFV----SQPGYVGLE----GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEP 136
Query: 483 -KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
+ W +D + ++ +H L C A N G + ++
Sbjct: 137 VDLLWLQDAVPLATAPGH-------GPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATI 189
Query: 542 LEAPP 546
P
Sbjct: 190 TVLPQ 194
Score = 57.2 bits (138), Expect = 3e-09
Identities = 24/133 (18%), Positives = 37/133 (27%), Gaps = 20/133 (15%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEITHTD 601
E P + P + G L+ + PP WL +G+ L +
Sbjct: 1 EESPFVGNPGN----ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPL 56
Query: 602 RYL---------NLRISDARRADRGEYQAHGVNSLGEDV-ASFLVTVTDRP---LPPGKA 648
LRI+ + +D G+YQ V V + P P
Sbjct: 57 GEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEP--E 114
Query: 649 KVVMTLGKSVTLS 661
+ LS
Sbjct: 115 DRTVAANTPFNLS 127
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 108 bits (271), Expect = 8e-27
Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 9/117 (7%)
Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
P P + P ++++ PE GG P+L Y E R G W
Sbjct: 3 LAQADTPSSPSIDQVEPYSST--AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 60
Query: 741 MVE---DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPS 793
E + + + GL+P Y R+ A N G E S T +AP
Sbjct: 61 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI---SAASEFKTQPVREPSAPK 114
Score = 107 bits (268), Expect = 2e-26
Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 9/116 (7%)
Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
P P + P ++++ PE GG P+L Y E R G W
Sbjct: 4 AQADTPSSPSIDQVEPYSST--AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61
Query: 403 VE---DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPS 454
E + + + GL+P Y R+ A N G E S T +AP
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEI---SAASEFKTQPVREPSAPK 114
Score = 95.3 bits (237), Expect = 3e-22
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
R P P + D + + + DGGSP+ YLV +R S W
Sbjct: 107 VREPSAPKLEGQM----GEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSE-WKPEIRL 160
Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
+M+ L+ Y+ + AEN G S+ + + T
Sbjct: 161 PSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKA---AHFVFRT 200
Score = 95.3 bits (237), Expect = 3e-22
Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 26/165 (15%)
Query: 299 IIEQKKQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYC------------------- 339
E + ++ +++ + + I GL T Y
Sbjct: 43 KAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPET-TYAVRLAALNGKGLGEISAASE 101
Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS 399
+P P P+L D + + + DGGSP+ YLV +R S W
Sbjct: 102 FKTQPVREPSAPKL-EGQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSE-WKPEI 158
Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
+M+ L+ Y+ + AEN G S+ + + T
Sbjct: 159 RLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKA---AHFVFRT 200
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 110 bits (276), Expect = 2e-26
Identities = 36/223 (16%), Positives = 65/223 (29%), Gaps = 26/223 (11%)
Query: 460 HDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFE--IFSSRRQRIVTDNDISTLIIHQAA 516
+ +E + ++WYKD + + + + RI + L A
Sbjct: 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAK 70
Query: 517 LMDEGEIKCTATNRAGHSITKARLR-LEAPPTIRLPKQYEDGLLFEMGEIIKLK------ 569
+ D G C N + K + +E P + Q + L
Sbjct: 71 VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEF 130
Query: 570 VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGE 629
P +W + +PL + DR L + + RG Y H +
Sbjct: 131 FKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR---LIVMNVAEKHRGNYTCHASYTYLG 187
Query: 630 D------VASFLVTVTDRPLPP-----GKAKVVMTLGKSVTLS 661
V F+ ++P P + + LG + L
Sbjct: 188 KQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLI 230
Score = 99.4 bits (247), Expect = 1e-22
Identities = 49/332 (14%), Positives = 81/332 (24%), Gaps = 57/332 (17%)
Query: 339 CVIKKPP----GPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY 394
C ++ + + P + + TI W D + R
Sbjct: 6 CKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWY---KDDSKTPVSTEQASRIHQHKE 62
Query: 395 WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ P VED SG Y N + +
Sbjct: 63 KLWFVPAKVED-----SG-----HYYC--VVRNSSYCLR---IKISAKF--VENEPNLCY 105
Query: 455 FIRALHDTTALEDEKVEFT------VQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
+A+ + E PK+ WYKD + +
Sbjct: 106 NAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD--- 162
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE---------APPTIRLPKQYEDGLL 559
LI+ A G C A+ +E P I P + +
Sbjct: 163 RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPA--NETME 220
Query: 560 FEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN------------LR 607
++G I+L ++ G A W NG + N L
Sbjct: 221 VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLN 280
Query: 608 ISDARRAD-RGEYQAHGVNSLGEDVASFLVTV 638
IS+ + + N+ G D A +
Sbjct: 281 ISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 103 bits (258), Expect = 2e-26
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 8/111 (7%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P L + + T+ W+ P P GY++E +
Sbjct: 6 SGPVPATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYV--G 62
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
++T V GL Y R+ A N G S S+ + Q S + PS
Sbjct: 63 KETMCTVDGLHFNSTYNARVKAFNKTGVSPY---SKT--LVLQTSEGSGPS 108
Score = 103 bits (258), Expect = 2e-26
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 8/111 (7%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P L + + T+ W+ P P GY++E +
Sbjct: 6 SGPVPATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVYV--G 62
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
++T V GL Y R+ A N G S S+ + Q S + PS
Sbjct: 63 KETMCTVDGLHFNSTYNARVKAFNKTGVSPY---SKT--LVLQTSEGSGPS 108
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 103 bits (258), Expect = 3e-26
Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 7/119 (5%)
Query: 342 KKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
+ P P + F + DGG+P+L Y+V++R
Sbjct: 3 EASMREPSPPSIH--GQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKV 59
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 460
+++ L+ Y+ +ITA N +G+SEP P H
Sbjct: 60 QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS-MPP---KPNIIKDHHHHHH 114
Score = 102 bits (257), Expect = 5e-26
Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 7/117 (5%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P + F + DGG+P+L Y+V++R
Sbjct: 5 SMREPSPPSIH--GQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQG 61
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 799
+++ L+ Y+ +ITA N +G+SEP P H
Sbjct: 62 NKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS-MPP---KPNIIKDHHHHHH 114
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 103 bits (258), Expect = 3e-26
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P + + W P D L Y V + + G +
Sbjct: 17 LPSAPRDVVA----SLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHP 72
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 453
+ ++ + L P Y FR+ A+N G E S PL V Q +
Sbjct: 73 GEMQVTIQNLMPATVYIFRVMAQNKHGSGES---SAPLRVETQPESGPSS 119
Score = 103 bits (258), Expect = 3e-26
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P + + W P D L Y V + + G +
Sbjct: 17 LPSAPRDVVA----SLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHP 72
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
+ ++ + L P Y FR+ A+N G E S PL V Q +
Sbjct: 73 GEMQVTIQNLMPATVYIFRVMAQNKHGSGES---SAPLRVETQPESGPSS 119
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 102 bits (257), Expect = 4e-26
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 5/100 (5%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
+ F AL D LE + + P V W + + + + +
Sbjct: 4 GSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAM 62
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
L++ D G C G T A L + A P+
Sbjct: 63 LELVVRNLRPQDSGRYSC----SFGDQTTSATLTVTALPS 98
Score = 69.7 bits (171), Expect = 1e-14
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
P + + +D + E G L+ ++ + P +W + L G +Y +
Sbjct: 6 SGPVRFQ--EALKDLEVLE-GGAATLRCVLSSVAAPV-KWCYGNNVLRPGDKYSLRQEGA 61
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGK 647
L L + + R D G Y S G+ S +TVT P P
Sbjct: 62 MLELVVRNLRPQDSGRYSC----SFGDQTTSATLTVTALPSGPSS 102
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 102 bits (256), Expect = 4e-26
Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
S ++ + L D T +++ ++ W K+G + S R ++V I
Sbjct: 3 SGSSGLKILTPLTDQTVNLGKEICLKCEISE--NIPGKWTKNGLPVQESDRLKVVQKGRI 60
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
L+I A DEG+ + A++ + + P+
Sbjct: 61 HKLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98
Score = 70.1 bits (172), Expect = 1e-14
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
G+ I LK ++ P W NG P+ R ++ R L I++A D G+Y
Sbjct: 22 GKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVF- 78
Query: 623 GVNSLGEDVASFLVTVTDRP 642
V V P
Sbjct: 79 -APDAYNVTLPAKVHVISGP 97
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 103 bits (258), Expect = 4e-26
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P PP +L + LD+ V + W P D SP+ +++E+ + V
Sbjct: 16 VPNPPFDLEL---TDQLDKSV-QLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEV 70
Query: 404 EDTE-LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
T+ L P Y FR+ A N +G S P SE T P P+ +
Sbjct: 71 SGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYL-TKASEPDKNPTSGPS 125
Score = 103 bits (258), Expect = 4e-26
Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P PP +L + LD+ V + W P D SP+ +++E+ + V
Sbjct: 16 VPNPPFDLEL---TDQLDKSV-QLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEV 70
Query: 743 EDTE-LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
T+ L P Y FR+ A N +G S P SE T P P+ +
Sbjct: 71 SGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYL-TKASEPDKNPTSGPS 125
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 105 bits (265), Expect = 5e-26
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P PPGK L+ + + ++ WE PE+DGGS +LGY+VE + GS W + V
Sbjct: 102 RPLPPGKITLMDVTRN----SVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT--V 155
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443
+ TE ++GL G Y FR++A+N G S+P LS P+
Sbjct: 156 KVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIA 195
Score = 105 bits (263), Expect = 9e-26
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
PGPP ++ + + T+ W+PP DGGS + Y+VE R + + + +
Sbjct: 5 TPGPPQDLKV----KEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATN-C 59
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
T V L+ G Y FR+ AEN G P +E P I
Sbjct: 60 HKTSWKVDQLQEGCSYYFRVLAENEYGIGLP---AETAESVKASERPLPPGKITL 111
Score = 90.9 bits (226), Expect = 7e-21
Identities = 45/162 (27%), Positives = 64/162 (39%), Gaps = 51/162 (31%)
Query: 624 VNSLGEDVASFLVTVT---DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY 680
N G + + +RPLPPGK ++ SV+LSW +PE
Sbjct: 82 ENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEH------------- 128
Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
DGGS +LGY+VE + GS W +
Sbjct: 129 ---------------------------------DGGSRILGYIVEMQTKGSDKWATCAT- 154
Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 782
V+ TE ++GL G Y FR++A+N G S+P LS P+
Sbjct: 155 -VKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIA 195
Score = 87.0 bits (216), Expect = 1e-19
Identities = 35/158 (22%), Positives = 45/158 (28%), Gaps = 50/158 (31%)
Query: 640 DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSL 699
D P PP KV SVTL+W P
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLL-------------------------------- 31
Query: 700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ 759
DGGS + Y+VE R + + + + T V L+ G Y
Sbjct: 32 --------------DGGSKIKNYIVEKRESTRKAYSTVATN-CHKTSWKVDQLQEGCSYY 76
Query: 760 FRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
FR+ AEN G P +E P I
Sbjct: 77 FRVLAENEYGIGLP---AETAESVKASERPLPPGKITL 111
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 102 bits (256), Expect = 5e-26
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
+ + I+ L D E VE ++ TP V W KD I S++ +V + ++
Sbjct: 6 SGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM 64
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
L+I A+L D GE C A L +E +
Sbjct: 65 LVIRGASLKDAGEYTCEVEASKS----TASLHVEEKAS 98
Score = 66.6 bits (163), Expect = 2e-13
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 8/103 (7%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
P I K ED + GE ++L+ ++ P WL + + + +Y++
Sbjct: 6 SGPAAII--KPLEDQWVAP-GEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGT 61
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
L I A D GEY S + + V ++ P
Sbjct: 62 MAMLVIRGASLKDAGEYTCEVEASKS----TASLHVEEKASGP 100
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 102 bits (255), Expect = 6e-26
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
APSF L D +E + V G P P+++W +G I +R + ++ L
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARS---TCEAGVAEL 66
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLR 541
I A D G C A N G A +
Sbjct: 67 HIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
Score = 65.0 bits (159), Expect = 5e-13
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 536 TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY 595
+ +E P+ + D + E G+ L+ S+ G P P WL NG+P+
Sbjct: 2 SSGSSGMEVAPSFSSVLK--DCAVIE-GQDFVLQCSVRGTPVPRITWLLNGQPIQYARST 58
Query: 596 EITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
L I DA D G Y N+LG+ S VTV
Sbjct: 59 ---CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 102 bits (255), Expect = 6e-26
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
+ A F L + E FT + E P V+W K E+ +S + + +
Sbjct: 4 GSSGANCFTEELTNLQVEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLT 62
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
L I D C G + ++A+L ++ +
Sbjct: 63 LRLTISALEKADSDTYTC----DIGQAQSRAQLLVQGRRS 98
Score = 65.0 bits (159), Expect = 6e-13
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
P T W L + G+++ + L L IS +AD Y
Sbjct: 23 KGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTC- 80
Query: 623 GVNSLGEDVASFLVTVTDRPLPP 645
+G+ + + V R P
Sbjct: 81 ---DIGQAQSRAQLLVQGRRSGP 100
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 101 bits (254), Expect = 1e-25
Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 5/100 (5%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT-DNDIS 508
I L D E F ++ V W+ D + ++ I
Sbjct: 11 GRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI 548
L + Q AL D G I AG A LR+ P++
Sbjct: 71 VLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKPSV 106
Score = 65.1 bits (159), Expect = 7e-13
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 536 TKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRY 595
+ + ++ + + + ED + E G + ++ W + PL +
Sbjct: 3 SGSSGLVQGRR-VHIIEDLEDVDVQE-GSSATFRCRISPANYEPVHWFLDKTPLHANELN 60
Query: 596 EITHTD-RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
EI Y L + D G G+ AS + VT++P
Sbjct: 61 EIDAQPGGYHVLTLRQLALKDSGTIYF----EAGDQRASAALRVTEKP 104
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 100 bits (251), Expect = 2e-25
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P PP + + + V T+ W+ PV Y +++R G+ + V
Sbjct: 7 GPKPPIDLVV---TETTATSV-TLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDG-V 58
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
T + GL P Y FR+ A N +G P SE + + PS
Sbjct: 59 ATTRYSIGGLSPFSEYAFRVLAVNSIGRGPP---SEAVRAR--TGEQSGPS 104
Score = 100 bits (251), Expect = 2e-25
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P PP + + + V T+ W+ PV Y +++R G+ + V
Sbjct: 7 GPKPPIDLVV---TETTATSV-TLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDG-V 58
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
T + GL P Y FR+ A N +G P SE + + PS
Sbjct: 59 ATTRYSIGGLSPFSEYAFRVLAVNSIGRGPP---SEAVRAR--TGEQSGPS 104
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 111 bits (279), Expect = 3e-25
Identities = 49/332 (14%), Positives = 83/332 (25%), Gaps = 67/332 (20%)
Query: 473 TVQVEGIPTPKVSWYKDGFEIFSSRRQRIV---TDNDISTLIIHQAALMDEGEIKCTATN 529
V+V P W G + R + + +I +G +
Sbjct: 97 YVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVK 156
Query: 530 RAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL 589
GH T+ P + E G+ + S G R G +
Sbjct: 157 VLGHPCTR-------TPHFLRIQNVE----VNAGQFATFQCSAIGRTVAGDRLWLQGIDV 205
Query: 590 TSGGRYEITHTDRY---LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG 646
EI T + + + + D G+Y+ G ++++ V P
Sbjct: 206 RDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEP---- 261
Query: 647 KAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTI 706
P P PQL + I
Sbjct: 262 -------------------------------------PVPIAPPQLASVGAT----YLWI 280
Query: 707 RWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAEN 766
+ +G P++ VE+ W P V+ T + L+P Y+ +
Sbjct: 281 QLNANSINGDGPIVAREVEYCTASGS-WNDRQP--VDSTSYKIGHLDPDTEYEISVLLTR 337
Query: 767 VVGFSEPGPLSEPLTV-TYQRSPAAAPSFIRA 797
G L T P P +
Sbjct: 338 PGEGG-TGSPGPALRTRTKCADPMRGPRKLEV 368
Score = 99.5 bits (247), Expect = 2e-21
Identities = 55/500 (11%), Positives = 113/500 (22%), Gaps = 72/500 (14%)
Query: 330 GLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRR 389
G+ + V+K+PP P PQL + I+ +G P++ VE+
Sbjct: 247 GVGISNYAELVVKEPPVPIAPPQLASVGAT----YLWIQLNANSINGDGPIVAREVEYCT 302
Query: 390 TGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRS 448
W P V+ T + L+P Y+ + G L T
Sbjct: 303 ASGS-WNDRQP--VDSTSYKIGHLDPDTEYEISVLLTRPGEGG-TGSPGPALRTRTKCAD 358
Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
P P + ++ + T++ E P + + ++ +
Sbjct: 359 PMRGPRKLEV----VEVKSR--QITIRWE--PFGYNVTRCHSYNLTVHYCYQVGGQEQVR 410
Query: 509 TLIIHQAA-----LMDEG-------EIKCTATNRAGH---SITKARLRLEAPPTIRLPKQ 553
+ +K N G + + P +
Sbjct: 411 EEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESI 470
Query: 554 YEDGLLFEM-----------GEIIKLKVSM--AGMPPPTARWLHNGEPLTSGG---RYEI 597
++ G I +++ P + ++ G +
Sbjct: 471 QGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLF 530
Query: 598 THTDRYLN--LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG--KAKVVMT 653
I A G + T P P +
Sbjct: 531 FGLYPGTTYSFTIR-----------ASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQ 579
Query: 654 LGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEY 713
+VT+ G + Y + P + I ++
Sbjct: 580 TDNTVTVMLKPAHSRGA-PVSVYQIVV-EEERPRRTKKTTEILKC---YPVPIHFQNASL 634
Query: 714 DGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP 773
+ + + L P Y+ A +
Sbjct: 635 LNSQYYFAAEFPADSLQAAQPFTIGDNK-TYNGYWNTPLLPYKSYRIYFQAASRAN---G 690
Query: 774 GPLSEPLTVTYQRSPAAAPS 793
+ + V + + P
Sbjct: 691 ETKIDCVQVATKGAATPKPV 710
Score = 93.7 bits (232), Expect = 1e-19
Identities = 56/488 (11%), Positives = 118/488 (24%), Gaps = 84/488 (17%)
Query: 334 GTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIR-----WEPPEYDGGSPVLGYLVEHR 388
+ + ++ P G+ L + D I G + V +
Sbjct: 44 PSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNG 103
Query: 389 RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS 448
G+P W + ++ + W +++ E + + + + V
Sbjct: 104 PLGNPIWNISGDPTRTWNRAELA-ISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGH-- 160
Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF---SSRRQRIVTDN 505
P + + + F G + G ++ + +
Sbjct: 161 PCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRR 220
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGE 564
I++ + D G+ +C G I+ A L ++ PP P Q
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLA--------S 272
Query: 565 IIKLKVSMAGMPPPTARWLHNGEPL-------TSGGRYEITHTDRYLNLRISDARRADRG 617
+ + + +G + T+ G + + +I
Sbjct: 273 VGATYLWIQLNANS---INGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEY 329
Query: 618 EYQ--AHGVNSLGEDVASFLVTVTDRPLPPGKA----KVVMTLGKSVTLSWSEPEDDGG- 670
E G + + P + +VV + +T+ W +
Sbjct: 330 EISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTR 389
Query: 671 CKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG 730
C N V Y G
Sbjct: 390 CHSYNLTVHYCYQVGG------------------------------------------QE 407
Query: 731 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPA 789
+ + ++ L P ++ N G S+ L V T + P
Sbjct: 408 QVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEG---RKE-SQELIVQTDEDLPG 463
Query: 790 AAPSFIRA 797
A P+
Sbjct: 464 AVPTESIQ 471
Score = 70.6 bits (172), Expect = 2e-12
Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 11/128 (8%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
PG S + ++W P G + Y + ++ S +
Sbjct: 458 DEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGV-ITLYEITYKAVSSFDPEIDLSNQS 516
Query: 743 E-------DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI 795
+T + GL PG Y F I A GF GP + T +P+ +
Sbjct: 517 GRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGF---GPPATNQFTTKISAPSMPAYEL 573
Query: 796 RALHDTTA 803
+ T
Sbjct: 574 ETPLNQTD 581
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 107 bits (268), Expect = 5e-25
Identities = 63/464 (13%), Positives = 111/464 (23%), Gaps = 121/464 (26%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P PP L + + V T+ WE + GY + T +
Sbjct: 1 PLSPPTNLHLEANPDT---GVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVH 54
Query: 404 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT 462
D + L PG Y + S P + P+ +R +
Sbjct: 55 ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVP---ISDTIIP----AVPPPTDLRFTNIG 107
Query: 463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD--E 520
V P+ ++ + + + S + L +
Sbjct: 108 PD------TMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSD---NAVVLTNLLP 158
Query: 521 G---EIKCTATNRAGHS---ITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG 574
G + ++ S + + L++P I +
Sbjct: 159 GTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSF---------------- 202
Query: 575 MPPPTARWLHNGEPLTSGGRYEIT-HTDRYLNLRISDARRADRGEYQAHG---------- 623
T W+ +T Y I H + + D R
Sbjct: 203 ----TVHWIAPRATITG---YRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVS 255
Query: 624 ---VNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY 680
+N E + P +VV S+ +SW P
Sbjct: 256 IVALNGREESPLLI-GQQSTVSDVPRDLEVVAATPTSLLISWDAPA-------------- 300
Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
V Y + + TG V+
Sbjct: 301 ------------------------------------VTVRYYRITYGETGGNSPVQEFTV 324
Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
+ +SGL+PG Y + A G S S+P+++ Y
Sbjct: 325 PGSKSTATISGLKPGVDYTITVYAVTGRGDSPAS--SKPISINY 366
Score = 78.3 bits (193), Expect = 2e-15
Identities = 44/283 (15%), Positives = 77/283 (27%), Gaps = 76/283 (26%)
Query: 581 RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHG-------------VNSL 627
W + P +G R T T+ + + AD+ V
Sbjct: 22 SWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDD 81
Query: 628 GEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY------- 680
E V + P PP + ++ ++W+ P + N++V Y
Sbjct: 82 KESVPISDTIIPAVP-PPTDLRFTNIGPDTMRVTWAPPPSI---DLTNFLVRYSPVKNEE 137
Query: 681 --------------------------FR-------PPGPP--GKPQLLPDSPS------L 699
P G+ + DSP+ +
Sbjct: 138 DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDI 197
Query: 700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ 759
+ FT+ W P + + GY + H R + ++ L PG Y
Sbjct: 198 TANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYV 253
Query: 760 FRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
I A N PL + Q + + P + + T
Sbjct: 254 VSIVALNGRE-------ESPLLIGQQSTVSDVPRDLEVVAATP 289
Score = 74.5 bits (183), Expect = 4e-14
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 10/119 (8%)
Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
A+ G L P +++ +P+ I W+ P V Y +
Sbjct: 258 ALNGREESPLLIGQQSTVSDVPRDLEVVAATPT----SLLISWDAPA----VTVRYYRIT 309
Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
+ TG V+ + +SGL+PG Y + A G S S+P+++ Y
Sbjct: 310 YGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPAS--SKPISINY 366
Score = 71.8 bits (176), Expect = 3e-13
Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 23/148 (15%)
Query: 328 ITGLNVGTD----LYCVIKKPPGPP--GKPQLLPDSPS------LDRDVFTIRWEPPEYD 375
+T L GT+ + V ++ P G+ + DSP+ + + FT+ W P
Sbjct: 153 LTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR-- 210
Query: 376 GGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG 435
+ + GY + H R + ++ L PG Y I A N
Sbjct: 211 --ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGRE----- 263
Query: 436 PLSEPLTVTYQRSPAAAPSFIRALHDTT 463
PL + Q + + P + + T
Sbjct: 264 --ESPLLIGQQSTVSDVPRDLEVVAATP 289
Score = 71.4 bits (175), Expect = 3e-13
Identities = 22/137 (16%), Positives = 41/137 (29%), Gaps = 14/137 (10%)
Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
+ + I PP + P D + W PP + +LV
Sbjct: 77 TVKDDKESVPISDTIIPAVPPPTDLRFTNIGP----DTMRVTWAPPP---SIDLTNFLVR 129
Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQ 446
+ + V D ++++ L PG Y +++ S P Q
Sbjct: 130 YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTP-------LRGRQ 182
Query: 447 RSPAAAPSFIRALHDTT 463
++ +P+ I T
Sbjct: 183 KTGLDSPTGIDFSDITA 199
Score = 69.5 bits (170), Expect = 1e-12
Identities = 28/215 (13%), Positives = 49/215 (22%), Gaps = 71/215 (33%)
Query: 642 PLPPGKAKVVMTLGKS-VTLSWSEPEDDGGCKIGNYIVEY-------------------- 680
PP + +T+SW I Y +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 58
Query: 681 --------------FR-------------------PPGPPGKPQLLPDSPSLDRDVFTIR 707
PP + P D +
Sbjct: 59 SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGP----DTMRVT 114
Query: 708 WEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV 767
W PP + +LV + + V D ++++ L PG Y +++
Sbjct: 115 WAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYE 171
Query: 768 VGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
S P Q++ +P+ I T
Sbjct: 172 QHESTP-------LRGRQKTGLDSPTGIDFSDITA 199
Score = 69.1 bits (169), Expect = 2e-12
Identities = 19/107 (17%), Positives = 28/107 (26%), Gaps = 10/107 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P PP L + + V T+ WE + GY + T +
Sbjct: 1 PLSPPTNLHLEANPDT---GVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVH 54
Query: 743 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 788
D + L PG Y + S P + P
Sbjct: 55 ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVP---ISDTIIPAVPPP 98
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 105 bits (263), Expect = 6e-25
Identities = 45/332 (13%), Positives = 81/332 (24%), Gaps = 46/332 (13%)
Query: 321 YVRLEEAITGLNVGTD--LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRW----EPPEY 374
V+ + G +G L C ++ P V + W E
Sbjct: 3 VVQAPTQVPGF-LGDSVTLPCYLQVPNMEVTH-------------VSQLTWARHGESGSM 48
Query: 375 DGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEP---GWRYQFRITAENVVGF 431
G + R + + L + GL G Y
Sbjct: 49 AVFHQTQGPSYSESKRLEFVAARLGAEL-RNASLRMFGLRVEDEGN-YTCLFVT------ 100
Query: 432 SEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDG 490
G S + + A P + + G P +++W+ D
Sbjct: 101 FPQGSRSVDIWLRVL----AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDL 156
Query: 491 FEIFSSRRQRIVTDNDI---STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
+ ++ + + S I+ ++ +D + C + + + L
Sbjct: 157 GGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP 216
Query: 548 IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLNL 606
+ D + L P PT W PL L
Sbjct: 217 PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF----AVAQGA--QL 270
Query: 607 RISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
I + + N+LG A V V
Sbjct: 271 LIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 83.6 bits (206), Expect = 2e-17
Identities = 28/238 (11%), Positives = 62/238 (26%), Gaps = 33/238 (13%)
Query: 455 FIRALHDTTALEDEKVEFTVQVEGIPTP-----KVSWYKDGFEI---------------- 493
++A + V ++ +++W + G
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 494 --FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLRLEAPPTIRL 550
R+ + ++L + + DEG C S + LR+ A P
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQN-- 120
Query: 551 PKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL---NLR 607
+ + L + VS G PP W + + + + +
Sbjct: 121 TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWI 180
Query: 608 ISDARRADRGEY--QAHGVNSLGEDVASFLVTV--TDRPLPPGKAKVVMTLGKSVTLS 661
+ + + D + + + + +TV G TL+
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLT 238
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 99.2 bits (247), Expect = 1e-24
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG------------ 391
PP P + S D V +RW P + G P++ + V++R G
Sbjct: 2 STYPPTPPNVTRLS---DESV-MLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNI 56
Query: 392 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA 451
+ + + + V+ L+P Y+FRI A ++ S + P A
Sbjct: 57 PYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL----QPGA 112
Query: 452 A 452
A
Sbjct: 113 A 113
Score = 99.2 bits (247), Expect = 1e-24
Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG------------ 730
PP P + S D V +RW P + G P++ + V++R G
Sbjct: 2 STYPPTPPNVTRLS---DESV-MLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNI 56
Query: 731 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA 790
+ + + + V+ L+P Y+FRI A ++ S + P A
Sbjct: 57 PYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYL----QPGA 112
Query: 791 A 791
A
Sbjct: 113 A 113
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 99.3 bits (248), Expect = 1e-24
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW-----VRA 398
PGPP + S R V T+++ P YDG + + +LVE + +
Sbjct: 17 LPGPPTNLGI---SNIGPRSV-TLQFRPG-YDGKTSISRWLVEAQVGVVGEGEEWLLIHQ 71
Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 452
+ + + V L P Y FR+ N+VG S P S + T Q P++
Sbjct: 72 LSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ-TLQSGPSSG 124
Score = 99.3 bits (248), Expect = 1e-24
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW-----VRA 737
PGPP + S R V T+++ P YDG + + +LVE + +
Sbjct: 17 LPGPPTNLGI---SNIGPRSV-TLQFRPG-YDGKTSISRWLVEAQVGVVGEGEEWLLIHQ 71
Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 791
+ + + V L P Y FR+ N+VG S P S + T Q P++
Sbjct: 72 LSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ-TLQSGPSSG 124
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 98.2 bits (245), Expect = 1e-24
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 448 SPAAAPSFIRALHD-TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND 506
S ++ +F + L + +V F V++ P +V WYK+G EI S +
Sbjct: 3 SGSSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
L I+ + D+ E AG L + + P+
Sbjct: 62 QRILFINNCQMTDDSEYYV----TAGDEKCSTELFVRSGPS 98
Score = 66.3 bits (162), Expect = 2e-13
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 11/102 (10%)
Query: 543 EAPPTI--RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT 600
+ L Y+ + G ++ V +A P +W NG+ + +Y H
Sbjct: 5 SSGAAFAKILDPAYQ----VDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHK 59
Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
L I++ + D EY + G++ S + V P
Sbjct: 60 GCQRILFINNCQMTDDSEYYV----TAGDEKCSTELFVRSGP 97
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 98.6 bits (246), Expect = 1e-24
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 3/102 (2%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
+ ++ + D T E+ F +V WYK+G E+ S+R I
Sbjct: 4 GSSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRF 62
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR 549
L+I DEG+ A A+L
Sbjct: 63 HKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIKVSG 102
Score = 60.9 bits (148), Expect = 2e-11
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
E K ++ T +W NG + R I+H R+ L I D R D G+Y
Sbjct: 23 AEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFV 81
Query: 623 GVNSLGEDVASFLVTVTDRP 642
S + +
Sbjct: 82 PDGYALS--LSAKLNFLEIK 99
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 98.6 bits (246), Expect = 1e-24
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P P++ + ++ T++W+ P D GS + +++E G +M
Sbjct: 17 EPDIPNPPRIA----NRTKNSLTLQWKAP-SDNGSKIQNFVLE-WDEGKGNGEFCQCYMG 70
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ ++ L P +FR++A N G S SE V Y S + PS
Sbjct: 71 SQKQFKITKLSPAMGCKFRLSARNDYGTSGF---SEE--VLYYTSGCSGPS 116
Score = 98.6 bits (246), Expect = 1e-24
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P P++ + ++ T++W+ P D GS + +++E G +M
Sbjct: 17 EPDIPNPPRIA----NRTKNSLTLQWKAP-SDNGSKIQNFVLE-WDEGKGNGEFCQCYMG 70
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ ++ L P +FR++A N G S SE V Y S + PS
Sbjct: 71 SQKQFKITKLSPAMGCKFRLSARNDYGTSGF---SEE--VLYYTSGCSGPS 116
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 97.8 bits (244), Expect = 2e-24
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQRIVTDND 506
+ + L LE E F + + W G + SS R +
Sbjct: 4 GSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGR 63
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI 548
L++ +AA D GE+ + +KA L +
Sbjct: 64 KYILVVREAAPSDAGEVVFS----VRGLTSKASLIVRERSGP 101
Score = 65.9 bits (161), Expect = 4e-13
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 563 GEIIKLKVSMA-GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
GE + ++ A W G+ + S R++ T R L + +A +D GE
Sbjct: 23 GESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVF 82
Query: 622 HGVNSLGEDVASFLVTVTDRPLPP 645
S+ + + V +R P
Sbjct: 83 ----SVRGLTSKASLIVRERSGPS 102
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 97.1 bits (242), Expect = 4e-24
Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 6/98 (6%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
+ F + L A E ++ V W K + R + D
Sbjct: 6 SGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCE 63
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
L IH ++ D GE C G T A L + A P
Sbjct: 64 LQIHDLSVADAGEYSC----MCGQERTSATLTVRALPA 97
Score = 62.4 bits (152), Expect = 5e-12
Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
P + + E G L+ ++ W E L GGRY +
Sbjct: 6 SGPARFT--QDLKTKEASE-GATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGT 60
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
L+I D AD GEY G++ S +TV P
Sbjct: 61 RCELQIHDLSVADAGEYSC----MCGQERTSATLTVRALP 96
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 96.2 bits (240), Expect = 5e-24
Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 455 FIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIH 513
+ E V++ ++E +V+WY ++ +S + I ++ ++ L +
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVK 63
Query: 514 QAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
+D+G +C N G + A L ++
Sbjct: 64 DITKLDDGTYRCKVVNDYGEDSSYAELFVKGVR 96
Score = 73.1 bits (180), Expect = 8e-16
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 563 GEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
G +K + T W L + +YEIT+ D L + D + D G Y+
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRC 75
Query: 622 HGVNSLGEDVASFLVTV 638
VN GED + + V
Sbjct: 76 KVVNDYGEDSSYAELFV 92
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 102 bits (255), Expect = 6e-24
Identities = 27/203 (13%), Positives = 59/203 (29%), Gaps = 14/203 (6%)
Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEG-IPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
A + + ED+ + + VS + +
Sbjct: 86 KDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH- 144
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKA-----RLRLEAPPTIRLPKQYEDGLLFEM 562
IH+A + + +C+A ++ + + + PP + L + +
Sbjct: 145 -GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPA--ELVRIR- 200
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLN---LRISDARRADRGEY 619
GE ++ S + + +L + + + H +RY L + G Y
Sbjct: 201 GEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260
Query: 620 QAHGVNSLGEDVASFLVTVTDRP 642
N G+ S V +
Sbjct: 261 SCVASNVQGKHSTSMFFRVVESA 283
Score = 93.9 bits (233), Expect = 5e-21
Identities = 31/219 (14%), Positives = 60/219 (27%), Gaps = 22/219 (10%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
+ P ++ + V G V W S + +D S L
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGP-----PSPHWTLYSDGSSSIL 53
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLK- 569
+ A + G +CT L ++ P E ++ + L
Sbjct: 54 STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQE--VVVFEDQDALLPC 111
Query: 570 VSMAGMPPPTARWLH-NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG 628
+ + + G PL Y + I A+ +YQ +
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH---GFTIHRAKFIQSQDYQCSALMGGR 168
Query: 629 EDV-ASFLVTVTDRPLPP-----GKAKVVMTLGKSVTLS 661
+ + S + V P A++V G++ +
Sbjct: 169 KVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIV 207
Score = 87.7 bits (217), Expect = 5e-19
Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 7/134 (5%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
+A +S + + Q+ P+ + + E + +
Sbjct: 162 SALMGGR----KVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNF 217
Query: 484 VSWYKDGFEIFSSRRQRIVTDNDI---STLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
+ + + +Q +N TL + Q G C A+N G T
Sbjct: 218 DVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFF 277
Query: 541 RLEAPPTIRLPKQY 554
R+ +
Sbjct: 278 RVVESAGNSHHHHH 291
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 96.7 bits (241), Expect = 7e-24
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P + S + W PP + + + V R G +
Sbjct: 17 LPSAPRDVVPVLVSSR----FVRLSWRPPA-EAKGNIQTFTVFFSREGDNRERALNTTQP 71
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+L V L+P Y FR+ A N G PG S+P+ V P + PS
Sbjct: 72 GSLQLTVGNLKPEAMYTFRVVAYNEWG---PGESSQPIKVA--TQPESGPS 117
Score = 96.7 bits (241), Expect = 7e-24
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 10/111 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P + S + W PP + + + V R G +
Sbjct: 17 LPSAPRDVVPVLVSSR----FVRLSWRPPA-EAKGNIQTFTVFFSREGDNRERALNTTQP 71
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+L V L+P Y FR+ A N G PG S+P+ V P + PS
Sbjct: 72 GSLQLTVGNLKPEAMYTFRVVAYNEWG---PGESSQPIKVA--TQPESGPS 117
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 102 bits (256), Expect = 8e-24
Identities = 56/350 (16%), Positives = 91/350 (26%), Gaps = 48/350 (13%)
Query: 309 TADNQFENQAPLYVRLEEAITGLNVGTD--LYCVIKKPPGPPGKPQLLPDSPSLDRDVFT 366
T Q V++ +++ G +GTD L+C P +
Sbjct: 5 TGGQQMGRDPSQVVQVNDSMYGF-IGTDVVLHCSFANPLPSV--------------KITQ 49
Query: 367 IRWEPPEYDGGSPVLGYLVEHRRTG----SPYWVRAS--PHMVEDTELMVSGLEP---GW 417
+ W+ + + G +PY R D + +S LE G
Sbjct: 50 VTWQ---KSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGV 106
Query: 418 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPA-AAPSFIRALHDTTALEDEKVEFTVQV 476
Y G L +T P L +D+ + T
Sbjct: 107 -YICEFATFPT------GNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTS 159
Query: 477 -EGIPTPKVSWYKDGFEI--FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH 533
G P VSW + R T IS + + + + C
Sbjct: 160 ANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDR 219
Query: 534 SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA-RWLHNGEPLTSG 592
L ++ P + + DG + +KL PP T W L G
Sbjct: 220 FKESLTLNVQYEPEVTIEGF--DGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG 277
Query: 593 GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
+ + G Y N +G V +T+
Sbjct: 278 VEAQNRTL-----FFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAA 322
Score = 64.4 bits (156), Expect = 5e-11
Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 16/128 (12%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF-IRALHDTTALEDEKVEFTVQVEGIPTP 482
+ + S L V Y P I L+ V+ T + + P
Sbjct: 212 IVNYHMDRFKE---SLTLNVQY------EPEVTIEGFDGNWYLQRMDVKLTCKADANPPA 262
Query: 483 -KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
+ W + + + N + G C ATN G + +
Sbjct: 263 TEYHWTTLNGSL----PKGVEAQNR-TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVN 317
Query: 542 LEAPPTIR 549
+ +
Sbjct: 318 ITEAAALE 325
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 95.8 bits (239), Expect = 1e-23
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P PQ+ S + + WE P G+ V Y +E +
Sbjct: 7 GPDQCKPPQVTCRSAT----CAQVNWEVPL-SNGTDVTEYRLEWGGVEGSMQICYC---G 58
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ GL P Y R+ A +VVG + +T P++ PS
Sbjct: 59 PGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT-----PPSSGPS 104
Score = 95.8 bits (239), Expect = 1e-23
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P PQ+ S + + WE P G+ V Y +E +
Sbjct: 7 GPDQCKPPQVTCRSAT----CAQVNWEVPL-SNGTDVTEYRLEWGGVEGSMQICYC---G 58
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ GL P Y R+ A +VVG + +T P++ PS
Sbjct: 59 PGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT-----PPSSGPS 104
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 101 bits (252), Expect = 2e-23
Identities = 40/274 (14%), Positives = 80/274 (29%), Gaps = 40/274 (14%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGI-PTPK---VSWYKDGFEIFSSRRQRIVTDNDI 507
A + + L + T V G P P +W KD +N+
Sbjct: 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------ENNT 51
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
+TL + A + G K T + + ++ + L + + ++
Sbjct: 52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVE 111
Query: 568 LKVS---MAGMPPP-----TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEY 619
L + G P W + + + ++ I + G Y
Sbjct: 112 LHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ-----------DITIQEFTADKNGVY 160
Query: 620 QAHGVNSLGEDVASFLVTVTDRPLPPGK---AKVVMTLGKSVTLSWSEPEDDGGCKIG-- 674
+ AS + + + + LG ++L++ ED G G
Sbjct: 161 TVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMP 220
Query: 675 NYIVEY--FRPPGPPGKPQLLPDSPSLDRDVFTI 706
N ++Y + P L+ + F+I
Sbjct: 221 NLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSI 254
Score = 67.5 bits (164), Expect = 4e-12
Identities = 30/246 (12%), Positives = 60/246 (24%), Gaps = 44/246 (17%)
Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-- 477
+++T ++ + E + + I VE V+
Sbjct: 66 SYKVTVQDTDTMTS----VESEVFLMEEAEL--IVNITEPQHFYVSSQTDVELHATVKFS 119
Query: 478 -GIPTPKV-----SWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA 531
G SW K I ++ + I + G +
Sbjct: 120 GGKTPADNYELHYSWSKGEDVIDTT-----------QDITIQEFTADKNGVYTVKVWGES 168
Query: 532 GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA--------GMPPPTAR-- 581
S A ++ + + + +G I L ++ GMP T +
Sbjct: 169 EDSAASASTKIMLATMN-VDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYN 227
Query: 582 WLHNGE----PLTSGGRYEITHTDRYL----NLRISDARRADRGEYQAHGVNSLGEDVAS 633
W E P G + +L A D ++ + +
Sbjct: 228 WYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDET 287
Query: 634 FLVTVT 639
V +
Sbjct: 288 VEVAAS 293
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 95.2 bits (237), Expect = 2e-23
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 449 PAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS 508
++ + A+ E+V T ++ P +V W KDG E+ S + ++ +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVR 68
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDG 557
L++ L D GE C + + + + PP + G
Sbjct: 69 RLVLPAVQLEDSGEYLCEIDDES----ASFTVTVTEPPVRIIYSGPSSG 113
Score = 71.7 bits (176), Expect = 4e-15
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
+ I P E + L P RW +GE + + D
Sbjct: 9 DVSSWIVYPSGKVYVAAVR-LERVVLTCE-LCRPWAEVRWTKDGEEVVESPALLLQKEDT 66
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
L + + D GEY + ++ ASF VTVT+ P
Sbjct: 67 VRRLVLPAVQLEDSGEYLC----EIDDESASFTVTVTEPP 102
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 93.9 bits (234), Expect = 3e-23
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
A + L+ E F +++ P W G + +S I+ D
Sbjct: 3 MALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI 61
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
LI+H L GE+ A N + + A L+++
Sbjct: 62 LILHNCQLGMTGEVSFQAAN----TKSAANLKVKE 92
Score = 56.2 bits (136), Expect = 6e-10
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
A I + K +F GE ++ ++ P +W G+PL + EI +
Sbjct: 2 AMALIEVEKPLYGVEVFV-GETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 604 LNLRISDARRADRGEYQA 621
L + + + GE
Sbjct: 60 HILILHNCQLGMTGEVSF 77
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 97.5 bits (243), Expect = 4e-23
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 8/120 (6%)
Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRA 398
+++ P P + + I WE D SP+L Y ++ + +P W A
Sbjct: 1 IVQDVPNAPKLTGITCQADKA-----EIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAA 54
Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
+ V + P Y FR+ A N +G S P S+ T T P P +
Sbjct: 55 YEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCT-TQPDVPFKNPDNVVG 113
Score = 96.3 bits (240), Expect = 1e-22
Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 8/116 (6%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHM 741
P P + + I WE D SP+L Y ++ + +P W A +
Sbjct: 5 VPNAPKLTGITCQADKA-----EIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKV 58
Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
V + P Y FR+ A N +G S P S+ T T P P +
Sbjct: 59 PNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCT-TQPDVPFKNPDNVVG 113
Score = 94.0 bits (234), Expect = 8e-22
Identities = 30/208 (14%), Positives = 49/208 (23%), Gaps = 70/208 (33%)
Query: 638 VTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIV------------------- 678
V D P P + + W + D I +Y +
Sbjct: 2 VQDVPNAPKLTGITCQ-ADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVP 59
Query: 679 --------------EY-FR-------------------------PPGPPGKPQLLPDSPS 698
Y FR P P P+
Sbjct: 60 NTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPN 119
Query: 699 LDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPY-WVRASPHMVEDTELMVSGLEPGW 756
I W P PE + +P Y V +R W + ++++
Sbjct: 120 ----NLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFV 175
Query: 757 RYQFRITAENVVGFSEPGPLSEPLTVTY 784
+Y ++ A N G ++ V Y
Sbjct: 176 KYLIKVVAINDRG---ESNVAAEEVVGY 200
Score = 81.7 bits (202), Expect = 1e-17
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPY-WVRASPH 401
P P P+ I W P PE + +P Y V +R W +
Sbjct: 104 PFKNPDNVVGQGTEPN----NLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIF 159
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
++++ +Y ++ A N G ++ V Y
Sbjct: 160 DWRQNNIVIADQPTFVKYLIKVVAINDRG---ESNVAAEEVVGY 200
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 94.4 bits (235), Expect = 5e-23
Identities = 25/107 (23%), Positives = 33/107 (30%), Gaps = 11/107 (10%)
Query: 441 LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR 500
LTV A F L + A E ++ V W+K + R
Sbjct: 13 LTVR-----ALPIKFTEGLRNEEATEGATAVLRCELSK--MAPVEWWKGHETLRDGDRHS 65
Query: 501 IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPT 547
+ D L I D GE C G T A L + A P+
Sbjct: 66 LRQDGARCELQIRGLVAEDAGEYLCM----CGKERTSAMLTVRAMPS 108
Score = 71.6 bits (176), Expect = 4e-15
Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 10/118 (8%)
Query: 529 NRAGHSITKARLR-LEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGE 587
+ T A L P + + E G L+ ++ M P W E
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFT--EGLRNEEATE-GATAVLRCELSKMAPVE--WWKGHE 56
Query: 588 PLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
L G R+ + L+I D GEY G++ S ++TV P P
Sbjct: 57 TLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLC----MCGKERTSAMLTVRAMPSGP 110
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 93.5 bits (233), Expect = 6e-23
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS--SRRQRIVTDN 505
S ++ + L DTTA E+VE +V V W+K+G EI R RI +
Sbjct: 3 SGSSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEG 61
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
LII A D E T + A+L ++
Sbjct: 62 KKHILIIEGATKADAAEYSVMTTGGQ----SSAKLSVDLK 97
Score = 55.0 bits (133), Expect = 2e-09
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSG--GRYEITHTDRYLNLRISDARRADRGEYQ 620
GE ++L+ ++ +W NGE + G RY I + L I A +AD EY
Sbjct: 22 GERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYS 80
Query: 621 AHGVNSLGEDVASFLVTVTDRPLPP 645
+S ++V + P
Sbjct: 81 V----MTTGGQSSAKLSVDLKSGPS 101
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 92.8 bits (231), Expect = 8e-23
Identities = 13/90 (14%), Positives = 22/90 (24%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
P + A V G P P +W + + + +++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 512 IHQAALMDEGEIKCTATNRAGHSITKARLR 541
A D G K N G +
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 87.8 bits (218), Expect = 5e-21
Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL 604
P I + + + G L+V G P PTA W +
Sbjct: 2 KPKILTASR---KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
++ A+RAD G Y+ N LGED A F V V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 92.5 bits (230), Expect = 2e-22
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
PG+P ++ + + + ++W PP+ G +LGY +++ R
Sbjct: 4 GSSGPGRPTMMISTTA--MNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFG-K 59
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+D V+GL G Y FR+ A+N G E E T + S
Sbjct: 60 DDQHFTVTGLHKGTTYIFRLAAKNRAGLGEE---FEKEIRTPEDLS-GPSS 106
Score = 92.5 bits (230), Expect = 2e-22
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
PG+P ++ + + + ++W PP+ G +LGY +++ R
Sbjct: 4 GSSGPGRPTMMISTTA--MNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFG-K 59
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+D V+GL G Y FR+ A+N G E E T + S
Sbjct: 60 DDQHFTVTGLHKGTTYIFRLAAKNRAGLGEE---FEKEIRTPEDLS-GPSS 106
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 97.3 bits (242), Expect = 2e-22
Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 29/206 (14%)
Query: 461 DTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
+ ++E V +V +P W+ +G +S + I A++ D
Sbjct: 10 WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST----------PSYRITSASVND 59
Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPP 578
GE +C +G S +++ + F GE + L+ +
Sbjct: 60 SGEYRCQRGL-SGRSDPIQLEIHRGWLLLQVSSRV-----FTEGEPLALRCHAWKDKLVY 113
Query: 579 TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
+ NG+ + H + NL I + G Y G+ A VTV
Sbjct: 114 NVLYYRNGKAF------KFFHWNS--NLTILKTNISHNGTYHCSGMGKHRYTSAGISVTV 165
Query: 639 TDRPLPPG---KAKVVMTLGKSVTLS 661
+ P + G VTLS
Sbjct: 166 KELFPAPVLNASVTSPLLEGNLVTLS 191
Score = 86.1 bits (213), Expect = 1e-18
Identities = 28/207 (13%), Positives = 57/207 (27%), Gaps = 19/207 (9%)
Query: 435 GPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEI 493
S+P+ + R + + E E + V +Y++G
Sbjct: 70 SGRSDPIQLEIHR-----GWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF 124
Query: 494 FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQ 553
S L I + + G C+ + ++ + ++ +
Sbjct: 125 KFFHWN--------SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNA 176
Query: 554 YEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARR 613
L E G ++ L + L+ G + + +I ARR
Sbjct: 177 SVTSPLLE-GNLVTLSCETKLLLQRPGLQLYFSF---YMGSKTLRGRNTSSEYQILTARR 232
Query: 614 ADRGEYQAHGVNSLGEDV-ASFLVTVT 639
D G Y G + S + +
Sbjct: 233 EDSGLYWCEAATEDGNVLKRSPELELQ 259
Score = 53.4 bits (128), Expect = 1e-07
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 21/125 (16%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP- 482
+ ++ S ++VT + + A + LE V + + + +
Sbjct: 149 SGMGKHRYT-----SAGISVTVKELFP--APVLNASVTSPLLEGNLVTLSCETKLLLQRP 201
Query: 483 ----KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
S+Y + R + S I A D G C A G ++ K
Sbjct: 202 GLQLYFSFYMGS------KTLRGRNTS--SEYQILTARREDSGLYWCEAATEDG-NVLKR 252
Query: 539 RLRLE 543
LE
Sbjct: 253 SPELE 257
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 92.5 bits (230), Expect = 2e-22
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 2/104 (1%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
+ P + + T D + G P P + W KDG + + + +N
Sbjct: 4 GSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN-- 61
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLP 551
L I A L D G C A+ +G + A + ++ P
Sbjct: 62 GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQP 105
Score = 65.2 bits (159), Expect = 8e-13
Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL-TSGGRYEITHTDR 602
PP IR + L G P PT W +G + T R +
Sbjct: 7 GPPVIRQGPVN---QTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG- 62
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
L+I A+ D G Y GE S + V + +P
Sbjct: 63 --VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPV 103
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 92.3 bits (229), Expect = 3e-22
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 12/119 (10%)
Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP-- 400
P P + + + D T+ W + Y +++ +
Sbjct: 11 DYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISLYNS 67
Query: 401 -------HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 452
++ V GL+ G RY F + A N G P +S ++
Sbjct: 68 VDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKSGPSS 126
Score = 91.9 bits (228), Expect = 5e-22
Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 12/118 (10%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP--- 739
P P + + + D T+ W + Y +++ +
Sbjct: 12 YLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISLYNSV 68
Query: 740 ------HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 791
++ V GL+ G RY F + A N G P +S ++
Sbjct: 69 DSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKSGPSS 126
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 97.1 bits (241), Expect = 4e-22
Identities = 26/202 (12%), Positives = 59/202 (29%), Gaps = 17/202 (8%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
ED + + S + + + V + I
Sbjct: 92 AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDL-TFVPNPKAGITIK 150
Query: 513 HQAALMDEGEIKCTATNRAGHSITKA-----RLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
+ ++C A + R ++A P + +P+ L + G+
Sbjct: 151 NVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPET---SHLLKKGDTFT 207
Query: 568 LKVSMAGMPPP-TARWLHNGEPLTSGGRYEIT-------HTDRYLNLRISDARRADRGEY 619
+ ++ + + WL + + + +R L IS AR D G +
Sbjct: 208 VVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVF 267
Query: 620 QAHGVNSLGEDVASFLVTVTDR 641
+ N+ G + + V ++
Sbjct: 268 MCYANNTFGSANVTTTLKVVEK 289
Score = 68.2 bits (166), Expect = 2e-12
Identities = 31/232 (13%), Positives = 67/232 (28%), Gaps = 31/232 (13%)
Query: 438 SEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSR 497
S+P + SP PS A + + + T V W +
Sbjct: 1 SQPSASPGEPSP---PSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN---- 49
Query: 498 RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDG 557
+ +N + I +A G C+ +N SI + + P + L
Sbjct: 50 ---EMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSI---YVFVRDPAKLFLVGL---P 100
Query: 558 LLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLTSGGRYEITHTDRYLNLRISDARRA-D 615
L + ++ + + +G+ L + + + + I + +RA
Sbjct: 101 LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTF---VPNPKAGITIKNVKRAYH 157
Query: 616 RGEYQAHGVNSLGEDV-ASFLVTVTDRPLPP-----GKAKVVMTLGKSVTLS 661
R + F + V + + ++ G + T+
Sbjct: 158 RLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVV 209
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 94.9 bits (236), Expect = 4e-22
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 5/103 (4%)
Query: 681 FRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASP 739
P P ++ S + + W + GY +R + S + +A+
Sbjct: 113 LDPMPVPELLEIEEYSET----AVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATI 168
Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 782
++ LE Y+F++ + + SE L + T
Sbjct: 169 EGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ 211
Score = 94.9 bits (236), Expect = 4e-22
Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 19/128 (14%)
Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHM- 402
PP P + L + +RW P + G P++ + V++R G W + ++
Sbjct: 2 TYPPTPPNVT----RLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIP 56
Query: 403 ----------VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV--TYQRSPA 450
+ V+ L+P Y+FRI A ++ S + P
Sbjct: 57 YGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPM 116
Query: 451 AAPSFIRA 458
P +
Sbjct: 117 PVPELLEI 124
Score = 94.9 bits (236), Expect = 4e-22
Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 19/128 (14%)
Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHM- 741
PP P + L + +RW P + G P++ + V++R G W + ++
Sbjct: 2 TYPPTPPNVT----RLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDNIP 56
Query: 742 ----------VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV--TYQRSPA 789
+ V+ L+P Y+FRI A ++ S + P
Sbjct: 57 YGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPM 116
Query: 790 AAPSFIRA 797
P +
Sbjct: 117 PVPELLEI 124
Score = 94.5 bits (235), Expect = 5e-22
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHM 402
P P ++ S + + W + GY +R + S + +A+
Sbjct: 115 PMPVPELLEIEEYSET----AVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEG 170
Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443
++ LE Y+F++ + + SE L + T
Sbjct: 171 AHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQ 211
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 91.7 bits (228), Expect = 4e-22
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P + +L + W+ P + P+ GY VE++ R +
Sbjct: 17 VPDTPTRLVF----SALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGELHRLNIPNP 70
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
T ++V L P Y FR+ A++ G+ E + S + PS
Sbjct: 71 AQTSVVVEDLLPNHSYVFRVRAQSQEGWGRE---REGVITI--ESQVSGPS 116
Score = 91.7 bits (228), Expect = 4e-22
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P + +L + W+ P + P+ GY VE++ R +
Sbjct: 17 VPDTPTRLVF----SALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGELHRLNIPNP 70
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
T ++V L P Y FR+ A++ G+ E + S + PS
Sbjct: 71 AQTSVVVEDLLPNHSYVFRVRAQSQEGWGRE---REGVITI--ESQVSGPS 116
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 93.9 bits (233), Expect = 4e-22
Identities = 36/187 (19%), Positives = 57/187 (30%), Gaps = 23/187 (12%)
Query: 462 TTALEDEKVEFTVQVEGIPTPKVS--WYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
T K+ T + T W K G + +
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------QKTEFKVDSDDQ 60
Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPT 579
GE C + A ++L PP ++ K E GE L +PP T
Sbjct: 61 WGEYSCVFLPEPMGT---ANIQLHGPPRVKAVKSSEHINE---GETAMLVCKSESVPPVT 114
Query: 580 A-RWLHNGEPL------TSGGRYEITHTDRYLNLRISDARRA-DRGEYQAHGVNSLGEDV 631
W + S R+ ++ + L I + D G+Y+ +G +S G D
Sbjct: 115 DWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQ 174
Query: 632 ASFLVTV 638
A + V
Sbjct: 175 AIITLRV 181
Score = 64.3 bits (156), Expect = 9e-12
Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 8/99 (8%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIP-TPKVSWYKDGFEIF------SSRRQRIVT 503
P E E + E +P +WYK S R + +
Sbjct: 82 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 141
Query: 504 DNDISTLIIHQAAL-MDEGEIKCTATNRAGHSITKARLR 541
S L I + D G+ +C T+ G LR
Sbjct: 142 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 93.9 bits (233), Expect = 7e-22
Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 29/198 (14%)
Query: 463 TALEDEKVEFT---VQVEGIPTPKVSWYKDG------------FEIFS-----SRRQRIV 502
TA E+V T +V P +VSW+K G ++ I
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 503 TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEM 562
+ L++ A + +G C + L + P T+ + + F
Sbjct: 62 RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQ---FPD 118
Query: 563 GEIIKLKVSMAGMPPPTARWLHNG----EPLTSGGRYEITHTDRYLNLRI-SDARRADRG 617
++ + ++ P P +WL P + G D L++ + +
Sbjct: 119 FSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMK-EKDGSLSVAVDLSLPKPWHL 177
Query: 618 EYQAHGVNSLGEDVASFL 635
G N E ++
Sbjct: 178 PVTCVGKNDKEEAHGVYV 195
Score = 65.4 bits (159), Expect = 4e-12
Identities = 10/86 (11%), Positives = 20/86 (23%), Gaps = 4/86 (4%)
Query: 451 AAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK----DGFEIFSSRRQRIVTDND 506
+ + + + T V P P V W + ++ D
Sbjct: 103 KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGS 162
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAG 532
+S + + C N
Sbjct: 163 LSVAVDLSLPKPWHLPVTCVGKNDKE 188
Score = 42.7 bits (100), Expect = 2e-04
Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 18/106 (16%)
Query: 573 AGMPPPTARWLHNGEPLTS-----------------GGRYEITHTDRYLNLRISDARRAD 615
+ P W G G ++I + L ++ A +
Sbjct: 19 SLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 78
Query: 616 RGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAK-VVMTLGKSVTL 660
G Y E ++V ++ +T+
Sbjct: 79 DGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTV 124
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 89.8 bits (223), Expect = 1e-21
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
+ P ++ + T D + G P P +SW K+GF + + +
Sbjct: 4 GSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ-- 61
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
TL I + D G C AT+ +G + A L
Sbjct: 62 GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
Score = 64.7 bits (158), Expect = 7e-13
Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL-TSGGRYEITHTDR 602
PP I + LK G P P WL G R I
Sbjct: 7 GPPIILQGPAN---QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG- 62
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
L+I + R +D G Y +S GE S ++ VT+
Sbjct: 63 --TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 89.4 bits (222), Expect = 2e-21
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 448 SPAAAPSFI---RALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD 504
S ++ P I + T E+V T ++ +WYKDG ++ S + D
Sbjct: 3 SGSSGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMD 61
Query: 505 NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
LI+ +A + D GE +C + + ++ P
Sbjct: 62 GRKHRLILPEAKVQDSGEFECRTEGVS----AFFGVTVQDPS 99
Score = 70.5 bits (173), Expect = 7e-15
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
P I P+ E + L ++ A W +G+ + + R
Sbjct: 6 SGPVHILSPQDKVSLTFTT-SERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGR 63
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
L + +A+ D GE++ A F VTV D P
Sbjct: 64 KHRLILPEAKVQDSGEFEC----RTEGVSAFFGVTVQDPSGPS 102
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 96.9 bits (240), Expect = 4e-21
Identities = 43/327 (13%), Positives = 74/327 (22%), Gaps = 55/327 (16%)
Query: 334 GTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPP------------------EYD 375
G + C + P G S F + PP D
Sbjct: 154 GANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213
Query: 376 GGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPG 435
G PV V + + + R+T ++G ++
Sbjct: 214 GLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILG-NQSQ 272
Query: 436 PLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS 495
+ +T+ P+ L E +V + ++
Sbjct: 273 ETLQTVTIYS------FPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR 326
Query: 496 SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK----ARLRLEAPPTIRLP 551
++ T D + C+AT + LR+ P +
Sbjct: 327 AQLLLKATPED------------NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDER 374
Query: 552 KQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDA 611
+ E G P P + L +G G
Sbjct: 375 DCPGNWTWPE-NSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------ESVTV 420
Query: 612 RRADRGEYQAHGVNSLGEDVASFLVTV 638
R G Y ++ GE V V
Sbjct: 421 TRDLEGTYLCRARSTQGEVTREVTVNV 447
Score = 81.5 bits (200), Expect = 3e-16
Identities = 46/295 (15%), Positives = 77/295 (26%), Gaps = 43/295 (14%)
Query: 438 SEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG---IPTPKVSWYKDGFEIF 494
+ +T +P A + + + QVEG V + E+
Sbjct: 75 TAKTFLTVYWTP---ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL- 130
Query: 495 SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR----- 549
+R+ V + T + C + AP ++
Sbjct: 131 --KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP 188
Query: 550 -LPKQYEDGLLFEMGEIIKLKVSMAGMPP---PTARWLHNGEPLTSGGRYEITHTDRYLN 605
P Q + E+ + S+ G+ P + L Y D +
Sbjct: 189 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY---GNDSFSA 245
Query: 606 LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG---KAKVVMTLGKSVTLSW 662
D G + LG L TVT P K ++ G VT+
Sbjct: 246 KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVK- 304
Query: 663 SEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS 717
C+ P +P P R ++ PE +G S
Sbjct: 305 --------CEAH---------PRAKVTLNGVPAQPLGPRAQLLLK-ATPEDNGRS 341
Score = 68.0 bits (165), Expect = 7e-12
Identities = 29/155 (18%), Positives = 45/155 (29%), Gaps = 23/155 (14%)
Query: 394 YWVRASPHMVEDTELMVSGLEPGWRYQFRITAEN-VVGFSEPGPLSEPLTVTYQRSPAAA 452
V A P +L++ F +A V G + L V Y
Sbjct: 316 NGVPAQPL-GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY------G 368
Query: 453 PSFIRALH--DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTL 510
P + T E+ + Q G P P++ KDG VT +
Sbjct: 369 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRD----- 423
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
EG C A + G + + + +P
Sbjct: 424 --------LEGTYLCRARSTQGEVTREVTVNVLSP 450
Score = 67.2 bits (163), Expect = 1e-11
Identities = 24/216 (11%), Positives = 53/216 (24%), Gaps = 25/216 (11%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
V T + + ++ + + + + + ++
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPMLLGIE-------TPLPKKELLLPGNNRKVYELSNVQED 60
Query: 521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-- 578
+ C + G S K L + P + +G+ + L+ + G P
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVYWTPER--VELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 579 -TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ--------AHGVNSLGE 629
T L + L R + + R + G+
Sbjct: 119 LTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFEN 175
Query: 630 DVASFLVTVTDRPLPPGKAKVVMTL--GKSVTLSWS 663
A + + P P + L T+ S
Sbjct: 176 TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCS 211
Score = 35.2 bits (80), Expect = 0.13
Identities = 32/247 (12%), Positives = 63/247 (25%), Gaps = 36/247 (14%)
Query: 561 EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
G + + S + P + + + +S+ + + +
Sbjct: 12 PRGGSVLVTCSTSCDQPMLLGIET-----PLPKKELLLPGNNRKVYELSNVQ--EDSQPM 64
Query: 621 AHGVNSLGEDVASFLVTVTDRPLPP--GKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIV 678
+ G+ A +TV P +GK++TL C
Sbjct: 65 CYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLR---------C------- 108
Query: 679 EYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS 738
+ G + L + L R ++ EP + LV G+ + R
Sbjct: 109 ---QVEGGAPRANL---TVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTE 162
Query: 739 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQ-----RSPAAAPS 793
+ + ++ Q + P L T P +
Sbjct: 163 LDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQ 222
Query: 794 FIRALHD 800
AL D
Sbjct: 223 VHLALGD 229
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 94.9 bits (236), Expect = 8e-21
Identities = 62/477 (12%), Positives = 101/477 (21%), Gaps = 135/477 (28%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P PP L + + V T+ WE + GY + T +
Sbjct: 2 PLSPPTNLHLEANPDT---GVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVH 55
Query: 404 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF-IRALHD 461
D + L PG Y + S P++ T + D
Sbjct: 56 ADQSSCTFDNLSPGLEYNVSVYTVK------DDKESVPISDTIIPEVPQLTDLSFVDITD 109
Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYK------DGFEIF------SSRRQRIVTDNDIST 509
++ + W G+ I D+ +
Sbjct: 110 SSIG------------------LRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGY 151
Query: 510 LIIHQAALMDEG---EIKCTATNRAGHS---ITKARLRLEAPPTIRLPKQYEDGLLF--- 560
+ ++ G +I G S + + P +R D +
Sbjct: 152 YTVTG---LEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWA 208
Query: 561 --EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRG- 617
++ V P + S +T NL G
Sbjct: 209 PPPSIDLTNFLVRY--SPVKNEEDVAELSISPSDNAVVLT------NLL--------PGT 252
Query: 618 EYQAH--GVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGN 675
EY V E T P S T+ W P
Sbjct: 253 EYVVSVSSVYEQHESTPLRGRQKTG-LDSPTGIDFSDITANSFTVHWIAPR--------- 302
Query: 676 YIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV 735
+ + GY + H
Sbjct: 303 -----------------------------------------ATITGYRIRHHPEHFSGRP 321
Query: 736 RASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
R + ++ L PG Y I A N S + Q + +A
Sbjct: 322 REDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPL-------LIGQQSTVSAHH 371
Score = 76.4 bits (188), Expect = 9e-15
Identities = 30/226 (13%), Positives = 52/226 (23%), Gaps = 70/226 (30%)
Query: 624 VNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY--- 680
V E V + + P V S+ L W+ I Y +
Sbjct: 79 VKDDKESVPISDTIIPEVP-QLTDLSFVDITDSSIGLRWTPLNSS---TIIGYRITVVAA 134
Query: 681 ------------------------------FR-------------------PPGPPGKPQ 691
PP +
Sbjct: 135 GEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLR 194
Query: 692 LLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSG 751
P D + W PP + +LV + + V D ++++
Sbjct: 195 FTNIGP----DTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTN 247
Query: 752 LEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
L PG Y +++ S P Q++ +P+ I
Sbjct: 248 LLPGTEYVVSVSSVYEQHESTP-------LRGRQKTGLDSPTGIDF 286
Score = 71.0 bits (174), Expect = 5e-13
Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 15/127 (11%)
Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
++ + T L K P + + FT+ W P + + GY +
Sbjct: 260 SVYEQHESTPLRGRQKTGLDSPTGIDFSDITAN----SFTVHWIAPR----ATITGYRIR 311
Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQ 446
H R + ++ L PG Y I A N S + Q
Sbjct: 312 HHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPL-------LIGQQ 364
Query: 447 RSPAAAP 453
+ +A
Sbjct: 365 STVSAHH 371
Score = 70.2 bits (172), Expect = 9e-13
Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 14/132 (10%)
Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
+ + PP + P D + W PP + +LV
Sbjct: 169 TLINGGESAPTTLTQQTAVPPPTDLRFTNIGP----DTMRVTWAPPP---SIDLTNFLVR 221
Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQ 446
+ + V D ++++ L PG Y +++ S P Q
Sbjct: 222 YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTP-------LRGRQ 274
Query: 447 RSPAAAPSFIRA 458
++ +P+ I
Sbjct: 275 KTGLDSPTGIDF 286
Score = 69.5 bits (170), Expect = 2e-12
Identities = 29/195 (14%), Positives = 48/195 (24%), Gaps = 62/195 (31%)
Query: 657 SVTLSWSEPEDDGGCKIGNYIVEY----------------------------------FR 682
+T+SW I Y +
Sbjct: 19 VLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVS 75
Query: 683 -------PPGPPGKPQLLPDSPS--------LDRDVFTIRWEPPEYDGGSPVLGYLVEHR 727
P ++P+ P + +RW P S ++GY +
Sbjct: 76 VYTVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVV 132
Query: 728 RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRS 787
G + V+GLEPG Y + G S P T Q++
Sbjct: 133 AAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAP-------TTLTQQT 185
Query: 788 PAAAPSFIRALHDTT 802
P+ +R +
Sbjct: 186 AVPPPTDLRFTNIGP 200
Score = 69.5 bits (170), Expect = 2e-12
Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 14/137 (10%)
Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
+ + I + + S +RW P S ++GY +
Sbjct: 78 TVKDDKESVPISDTIIPEVPQLTDLSFVDITDS----SIGLRWTPLN---SSTIIGYRIT 130
Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQ 446
G + V+GLEPG Y + G S P T Q
Sbjct: 131 VVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAP-------TTLTQ 183
Query: 447 RSPAAAPSFIRALHDTT 463
++ P+ +R +
Sbjct: 184 QTAVPPPTDLRFTNIGP 200
Score = 67.9 bits (166), Expect = 5e-12
Identities = 19/113 (16%), Positives = 29/113 (25%), Gaps = 13/113 (11%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P PP L + + V T+ WE + GY + T +
Sbjct: 2 PLSPPTNLHLEANPDT---GVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVH 55
Query: 743 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 794
D + L PG Y + S P++ T
Sbjct: 56 ADQSSCTFDNLSPGLEYNVSVYTVK------DDKESVPISDTIIPEVPQLTDL 102
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 93.0 bits (230), Expect = 2e-20
Identities = 28/232 (12%), Positives = 55/232 (23%), Gaps = 28/232 (12%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTP 482
T G + PS I ++ + ++ +
Sbjct: 108 TVTTKNGDCV--------QGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYN 159
Query: 483 KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542
++WYK+ E+ + LIIH L D G C +
Sbjct: 160 NITWYKNNQELIIDGTKYS---QSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSR 216
Query: 543 EAPPTIRLPKQYEDGLLF------EMGEIIKLKVSMAGMP----PPTARWLHNGEPLTSG 592
T+ + + L+ +GE + + W + +
Sbjct: 217 CKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGL 276
Query: 593 GRYEITHTDRYLN-----LRISDARRADRGE-YQAHGVNSLGEDVASFLVTV 638
+ L + G Y G N + + V +
Sbjct: 277 DFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 90.7 bits (224), Expect = 1e-19
Identities = 43/275 (15%), Positives = 71/275 (25%), Gaps = 34/275 (12%)
Query: 457 RALHDTTALEDEKVEFTVQVEG---------IPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
+ A E V+W K G R+ V +
Sbjct: 34 GGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNG-- 89
Query: 508 STLIIHQAALMDEGEI-KCTATNRAGHSITK-ARLRLEAPPTIRLPKQYEDGLLFEMGEI 565
L I D CT T + G + R + PP+ +P+ YE G + G
Sbjct: 90 -DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSC-IPETYELGTHDKYGID 147
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625
+ + W N + L G NL I + D G Y +
Sbjct: 148 LYCGIL-YAKHYNNITWYKNNQELIIDGTKYSQSGQ---NLIIHNPELEDSGRYDCYVHY 203
Query: 626 SLGEDVASFLVTVTDRP--LPPGKA--------KVVMTLGKSVTLS---WSEPEDDGGCK 672
+V+ +P K+ +T+G+ ++ S
Sbjct: 204 DDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVL 263
Query: 673 IGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIR 707
I + G +L S +
Sbjct: 264 IDWENPSGWIIGLDFGVYSILTSSGGITEATLYFE 298
Score = 53.7 bits (128), Expect = 1e-07
Identities = 11/130 (8%), Positives = 18/130 (13%), Gaps = 10/130 (7%)
Query: 424 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPK 483
+ + + + E T
Sbjct: 200 YVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLV 259
Query: 484 ----VSWYKDGFEIFSSRRQRIVTDND-----ISTLIIHQAALMDEGEI-KCTATNRAGH 533
+ W I +TL G C N
Sbjct: 260 DDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD 319
Query: 534 SITKARLRLE 543
+ LE
Sbjct: 320 KTLTTTVVLE 329
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 95.7 bits (238), Expect = 2e-20
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 6/142 (4%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P PP P ++ + + W+PP DGGS V Y +E R W +
Sbjct: 9 EPEPPRFPI----IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCA--KS 62
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
T + GL G +Y+FRI AEN G S+P + P+ + +
Sbjct: 63 RYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIV 122
Query: 803 ALEDEKPRNTNNCDYESKRTFQ 824
+ N +N ++ + +
Sbjct: 123 RGKGTVSSNYDNYVFDIWKQYY 144
Score = 94.5 bits (235), Expect = 5e-20
Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 16/166 (9%)
Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS 399
P PP P ++ + + W+PP DGGS V Y +E R W +
Sbjct: 5 ADVPEPEPPRFPI----IENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCA 60
Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRAL 459
T + GL G +Y+FRI AEN G S+P + P+ +
Sbjct: 61 --KSRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERK---------- 108
Query: 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
DE+ + + + ++ D ++ + + I D+
Sbjct: 109 RRRGYDVDEQGKIVRGKGTVSSNYDNYVFDIWKQYYPQPVEIKHDH 154
Score = 82.6 bits (204), Expect = 3e-16
Identities = 24/97 (24%), Positives = 37/97 (38%)
Query: 444 TYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT 503
+ A P FI + T E + F +V P V+W+KD E+ S +
Sbjct: 474 AFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY 533
Query: 504 DNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
+ + L I++ D+GE A N G L
Sbjct: 534 NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
Score = 65.2 bits (159), Expect = 7e-11
Identities = 17/79 (21%), Positives = 26/79 (32%)
Query: 561 EMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
G+ + PP W + L +Y + L I+ + D+GEY
Sbjct: 495 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 554
Query: 621 AHGVNSLGEDVASFLVTVT 639
NS G + VT
Sbjct: 555 VRAKNSYGTKEEIVFLNVT 573
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 86.0 bits (213), Expect = 2e-20
Identities = 21/97 (21%), Positives = 28/97 (28%), Gaps = 5/97 (5%)
Query: 450 AAAPSFIRALH----DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIF-SSRRQRIVTD 504
AP + V+F G P P + W K+G E R
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61
Query: 505 NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
N +LI+ D+G C N G L
Sbjct: 62 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 70.5 bits (173), Expect = 6e-15
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH-TD 601
AP K + +K + G P PT RWL NG+ R +
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62
Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
++ +L + +D+G Y N G ++ + V
Sbjct: 63 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 85.9 bits (213), Expect = 3e-20
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
A + A + +V +V+WYKDG ++ SS + R+ L++
Sbjct: 12 AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70
Query: 513 HQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
QA + GE C AG RL++
Sbjct: 71 QQAGQAEAGEYSC----EAGGQQLSFRLQVAG 98
Score = 65.5 bits (160), Expect = 4e-13
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 5/101 (4%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
+ + E G L +A W +G+ L+S + +
Sbjct: 6 SGKVVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGC 64
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPL 643
L + A +A+ GEY G SF + V +
Sbjct: 65 TRRLVVQQAGQAEAGEYSC----EAGGQQLSFRLQVAGQCF 101
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 95.6 bits (238), Expect = 4e-20
Identities = 66/311 (21%), Positives = 121/311 (38%), Gaps = 45/311 (14%)
Query: 29 RRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQ 88
R ++ +R+ I IQK RG+L R++Y+ M+ +A+ IQ + R QAR
Sbjct: 762 IRADK----LRAACIRIQKTIRGWL----MRKKYMRMRRAAITIQRYVR----GHQARCY 809
Query: 89 YLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANL 148
FL+ A I IQ + ++ KR Y ++ A +++Q R L
Sbjct: 810 A------------TFLRRTRAAIIIQKFQRMYVVRKR----YQCMRDATIALQALLRGYL 853
Query: 149 TMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQR 208
K + +L + K+ +IQ+ R L + H A + +Q YR +A R +
Sbjct: 854 VRNKYQ--MMLREHKSIIIQKHVR----GWLARVHYHRTLKAIVYLQCCYRRMMAKRELK 907
Query: 209 ERYVALRT--ATITIQTRFRAYLIAKNQR-----DEYAELKQARRFRFKLNLRKYERVIE 261
+ + R+ + ++ ++ EY L + L + +
Sbjct: 908 KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN---NLEITYSTETEK 964
Query: 262 LLKLKREQERQEKYRHQCAVKIQSL-WKMYRVRKKFADIIEQKKQAKKTADNQFENQAPL 320
L E+ ++ SL ++ ++RK+ +KK ++ AD L
Sbjct: 965 LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024
Query: 321 YVRLEEAITGL 331
L+E T L
Sbjct: 1025 VSELKEQNTLL 1035
Score = 82.8 bits (205), Expect = 4e-16
Identities = 43/289 (14%), Positives = 102/289 (35%), Gaps = 38/289 (13%)
Query: 48 YFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLK 107
+FR + E+ ++++ ++IQ+ R R+++++++
Sbjct: 750 FFRAGQVAYLEKIRADKLRAACIRIQKTIR------------------GWLMRKKYMRMR 791
Query: 108 HATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVI 167
A I IQ + R A + +A + +Q+ R M R + M+ +
Sbjct: 792 RAAITIQRYVRGHQA--RCYATFLRRTRAAIIIQKFQR----MYVVRKRYQCMRDATIAL 845
Query: 168 QQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRA 227
Q R L+R + + + I IQ+ R +A R Y A + +Q +R
Sbjct: 846 QALLRG-YLVRNKYQMMLREHKSII-IQKHVRGWLA----RVHYHRTLKAIVYLQCCYRR 899
Query: 228 YLIAKNQRDEYAELKQARRFRFKLNLRKYE---RVIEL-LKLKREQERQEKYRHQCAVKI 283
+ + E +LK R + ++++L K+ + + + +
Sbjct: 900 MM----AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE 955
Query: 284 QSLWKMYRVRKKFADIIEQKKQAKKTADNQFENQAPLYVRLEEAITGLN 332
+ + + + ++ K A N+ + +L + +
Sbjct: 956 ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004
Score = 60.5 bits (147), Expect = 3e-09
Identities = 46/286 (16%), Positives = 97/286 (33%), Gaps = 36/286 (12%)
Query: 1 MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQ 60
+C + +L I+IQ R + +R + +R TI +Q RGYL+ K +
Sbjct: 805 QARCYATFLRRTRAAIIIQKFQRMYVVRKRYQC----MRDATIALQALLRGYLVRNKYQM 860
Query: 61 EYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQ--------REEFLKLKHATIA 112
K ++ IQ+ R + LK Q + E KLK +
Sbjct: 861 MLREHK--SIIIQKHVRGWLARVHYHRT---LKAIVYLQCCYRRMMAKRELKKLKIEARS 915
Query: 113 IQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWY- 171
++ K L+ + +Q++ K L+++ ++ +
Sbjct: 916 VERYKKLH----------IGLENKIMQLQRKIDEQNKEYKS-----LLEKMNNLEITYST 960
Query: 172 RNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYL-- 229
KL + A R + R+ +T TI+ Y
Sbjct: 961 ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Query: 230 IAKNQRDEYAELKQARRFRFKLNLRKYERVIELLK-LKREQERQEK 274
+ + + + + +LN R +++ E+ + ++++ + K
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK 1066
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 85.1 bits (211), Expect = 5e-20
Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS----RRQRIVTDN 505
+ + L D ++VE V+V +V W K+G E+ R R D
Sbjct: 6 SGPVLIVTPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDG 64
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
LI D G + +A L +E
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNGGQ----CEAELIVEEK 100
Score = 50.4 bits (121), Expect = 7e-08
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG----GRYEIT 598
P I ED +F G+ +++ V ++ W+ NG LT RY
Sbjct: 6 SGPVLIV--TPLEDQQVFV-GDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFK 61
Query: 599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDR 641
+ L SD + DRG YQ + V ++
Sbjct: 62 KDGKRHILIFSDVVQEDRGRYQV----ITNGGQCEAELIVEEK 100
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 84.3 bits (209), Expect = 8e-20
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 5/91 (5%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
+F + F + E KV W + G +I +S + + T+ T
Sbjct: 6 KPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHT 64
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARL 540
L + + D+G AG S K L
Sbjct: 65 LTVREVGPADQGSYAV----IAGSSKVKFDL 91
Score = 64.7 bits (158), Expect = 5e-13
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 5/77 (6%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
G + RW G +++ +Y + L + + AD+G Y
Sbjct: 23 GSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAV- 80
Query: 623 GVNSLGEDVASFLVTVT 639
G F + V
Sbjct: 81 ---IAGSSKVKFDLKVI 94
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 91.4 bits (226), Expect = 9e-20
Identities = 28/217 (12%), Positives = 53/217 (24%), Gaps = 40/217 (18%)
Query: 463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVT-----------------DN 505
+ + VE T + + W + +T D
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEI 565
LII + D C ++ + L A L G+
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKE-EVQLLVFGLTANSDTHL----------LQGQS 113
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625
+ L + P+ + GG+ L +S D G + +
Sbjct: 114 LTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQ 163
Query: 626 SLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSW 662
+ + + V + V G+ V S+
Sbjct: 164 NQKKVEFKIDIVVLAFQKAS--SIVYKKEGEQVEFSF 198
Score = 77.5 bits (190), Expect = 4e-15
Identities = 32/244 (13%), Positives = 60/244 (24%), Gaps = 31/244 (12%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
DT L+ + + T++ +P V + + TL + Q L D
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDS 154
Query: 521 GEIKCTATNRAGHSITKARLRLEA---PPTIRLPKQYEDGLL--------FEMGEIIKLK 569
G CT K + + A +I K+ E ++ +L
Sbjct: 155 GTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELW 214
Query: 570 VSMAGMPPP----TARWLHNGEPLTSGGRYEITHTDRYLNLRIS----DARRADRGEYQA 621
T + + + + L L ++ + A G
Sbjct: 215 WQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTL 274
Query: 622 HGVNSLGEDVASFLVTVTDRPLPPGK--AKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE 679
G+ + V +V + LS + V
Sbjct: 275 ALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVW 334
Query: 680 YFRP 683
P
Sbjct: 335 VLNP 338
Score = 56.3 bits (135), Expect = 2e-08
Identities = 27/272 (9%), Positives = 58/272 (21%), Gaps = 54/272 (19%)
Query: 390 TGSP----YWVRASPHMVEDTE-LMVSGLEP---GWRYQFRITAENVVGFSE------PG 435
++ + L VS LE G + T E
Sbjct: 121 PPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSG-TWTC--TVLQNQKKVEFKIDIVVL 177
Query: 436 PLSEPLTVTYQRSPAAAP-SFIRALHDTTALEDEKVEFTVQVEGIPTPKV--SWYKDGFE 492
+ ++ Y++ SF A ++ + + +
Sbjct: 178 AFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVS 237
Query: 493 IFSSRRQRI--VTDNDISTLIIHQAALM--DEGEIKCTATNRAGHSITKARLRLEAPPTI 548
+ + + L + QA G + + G + L +
Sbjct: 238 VKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT-- 295
Query: 549 RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA--RWLHNGEPLTSGGRYEITHTDRYLNL 606
L + G P + R
Sbjct: 296 --------------QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKR-----------E 330
Query: 607 RISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
+ + G +Q +S G+ + + V
Sbjct: 331 KAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 87.4 bits (216), Expect = 1e-19
Identities = 34/212 (16%), Positives = 59/212 (27%), Gaps = 38/212 (17%)
Query: 463 TALEDEKVEFTVQVEGIPTPK----VSWYKDGFEIFSSRRQRIVTDNDI----------- 507
+ E + P + + W + + I+ D
Sbjct: 11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70
Query: 508 -------------STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQY 554
+++ + L D G +C G + K L + P+ + +
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG--TRCF 128
Query: 555 EDGLLFEMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARR 613
DG E+G KLK G P W + T + T + + +A
Sbjct: 129 VDGSE-EIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VISVKNASS 185
Query: 614 ADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
G Y N +G D + V PP
Sbjct: 186 EYSGTYSCTVQNRVGSDQCMLRLDVV----PP 213
Score = 76.6 bits (188), Expect = 9e-16
Identities = 40/225 (17%), Positives = 61/225 (27%), Gaps = 34/225 (15%)
Query: 341 IKKPPGP----PGKPQLLP---DSPSLDRDVFTIRW--EPPEYDGGSPVLGYLVEHRRTG 391
I P G+ LP D+ I W P + V+ +
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62
Query: 392 S---PYWVRAS----PHMVEDTELMVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPL 441
+ R D + V+ L+ G YQ + + G + L L
Sbjct: 63 NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGT-YQCK--VKKAPGVANKKFL---L 116
Query: 442 TVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIFSSRRQR 500
TV PS R D + + + EG + W K
Sbjct: 117 TV------LVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL 170
Query: 501 IVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
+ + + A+ G CT NR G RL + P
Sbjct: 171 AEMTS--PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213
Score = 40.4 bits (94), Expect = 0.001
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 10/108 (9%)
Query: 564 EIIKLKVSMAGMPPPTARWLHNGEPLTSG------GRYEITHTDRYL---NLRISDARRA 614
+I L L++G+ + GR T D ++ +++ + +
Sbjct: 35 DIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLS 94
Query: 615 DRGEYQAHGVNSLGEDVASFLVTVTDRP-LPPGKAKVVMTLGKSVTLS 661
D G YQ + G FL+TV +P +G L
Sbjct: 95 DIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLK 142
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 93.8 bits (232), Expect = 2e-19
Identities = 67/493 (13%), Positives = 115/493 (23%), Gaps = 92/493 (18%)
Query: 328 ITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEH 387
G D+ L D +RWEP +LG+++ +
Sbjct: 448 TKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFY 507
Query: 388 RRT--------------GSPYWVRA---------SPHMVEDTELMVSGLEPGWRYQFRIT 424
+ GS W P ++ GL+P +Y +
Sbjct: 508 KEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVK 567
Query: 425 AENVVGFSEP--GPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFT----VQVEG 478
G S+ + V ++ A PS + + ++ G
Sbjct: 568 TLVTFSDERRTYGAKSDIIYV---QTDATNPSVPLDPI-SVSNSSSQIILKWKPPSDPNG 623
Query: 479 IPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
T + +++ E E K + +
Sbjct: 624 NITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECC 683
Query: 539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
++ ++ FE + V + + N +E
Sbjct: 684 SCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKV 743
Query: 599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDV---ASFLVTVTDRPL-----PPGKAKV 650
L IS R + N + + V+ P G
Sbjct: 744 VNKESLV--ISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTH 801
Query: 651 VMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEP 710
+ V L W EP++ G I Y V Y R +L+R
Sbjct: 802 EIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGC------- 853
Query: 711 PEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF 770
+ GL PG Y RI A ++ G
Sbjct: 854 -------------------------------------RLRGLSPG-NYSVRIRATSLAG- 874
Query: 771 SEPGPLSEPLTVT 783
G +EP
Sbjct: 875 --NGSWTEPTYFY 885
Score = 66.1 bits (160), Expect = 5e-11
Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 32/217 (14%)
Query: 605 NLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMT--LGKSVTLSW 662
LR+ + G Y + +++ + + + + GK L S
Sbjct: 384 KLRLIRGETLEIGNYSFYALDNQN-LRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKM 442
Query: 663 SE-PEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG 721
E G + + ++ L D +RWEP +LG
Sbjct: 443 EEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLG 502
Query: 722 YLVEHRRT--------------GSPYWVRA---------SPHMVEDTELMVSGLEPGWRY 758
+++ ++ GS W P ++ GL+P +Y
Sbjct: 503 FMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQY 562
Query: 759 QFRITAENVVGFSEP--GPLSEPLTVTYQRSPAAAPS 793
+ G S+ + V ++ A PS
Sbjct: 563 AIFVKTLVTFSDERRTYGAKSDIIYV---QTDATNPS 596
Score = 56.5 bits (135), Expect = 5e-08
Identities = 33/224 (14%), Positives = 52/224 (23%), Gaps = 57/224 (25%)
Query: 623 GVNSLGEDVASFLVTVT---DRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVE 679
S ++ V P P V + L W P D G I +Y+V
Sbjct: 573 SDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVF 631
Query: 680 YFR-------------------------------------PPGPPGKPQLLPDSPSLDRD 702
+ R P D
Sbjct: 632 WERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQ 691
Query: 703 V--------FTIRWEPPEYDG-----GSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMV 749
+ F +E ++ S L + G+ R +V L++
Sbjct: 692 ILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVI 751
Query: 750 SGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
SGL Y+ + A N P R+ A +
Sbjct: 752 SGLRHFTGYRIELQACNQDT---PEERCSVAAYVSARTMPEAKA 792
Score = 46.8 bits (110), Expect = 4e-05
Identities = 21/140 (15%), Positives = 37/140 (26%), Gaps = 11/140 (7%)
Query: 321 YVRLEEAITGLNVGTDLYCVIKKP-PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--- 376
+ E+ Y P + L+ F +E ++
Sbjct: 658 WSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQIL--KELEESSFRKTFEDYLHNVVFV 715
Query: 377 --GSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
S L + G+ R +V L++SGL Y+ + A N P
Sbjct: 716 PRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDT---P 772
Query: 435 GPLSEPLTVTYQRSPAAAPS 454
R+ A +
Sbjct: 773 EERCSVAAYVSARTMPEAKA 792
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 87.4 bits (216), Expect = 2e-19
Identities = 34/199 (17%), Positives = 61/199 (30%), Gaps = 21/199 (10%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS------------ 508
ED V V + +WYK R V +++++
Sbjct: 8 PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII 67
Query: 509 ----TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGE 564
+L+ + D G T+ P + Q + + E +
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKE-LD 126
Query: 565 IIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV 624
+ L ++ +WL N + L R ++ + LRI +R D GEYQ
Sbjct: 127 SVTL-TCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSI--LRIDPIKREDAGEYQCEIS 183
Query: 625 NSLGE-DVASFLVTVTDRP 642
N + S + + P
Sbjct: 184 NPVSVRRSNSIKLDIIFDP 202
Score = 38.9 bits (90), Expect = 0.004
Identities = 14/119 (11%), Positives = 29/119 (24%), Gaps = 19/119 (15%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSG--GRYEIT---------HTDRYL-----NL 606
+ L V + W R+ ++ R + +L
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73
Query: 607 RISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAK---VVMTLGKSVTLSW 662
D G Y + + + +P+ + + SVTL+
Sbjct: 74 LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC 132
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 84.7 bits (209), Expect = 2e-19
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 13/105 (12%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQ---------- 499
+ F++A VE + G P P++ W+ +G Q
Sbjct: 19 SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 500 ---RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
+ ST+ I D G +C A+N + R
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123
Score = 50.0 bits (119), Expect = 2e-07
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 527 ATNRAGHSITKARLRLEAPPT-IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHN 585
+++ H + R ++ P + +G ++L G P P +W
Sbjct: 3 SSHHHHHHSSGLVPRGSHMAGFVQAPLSQQ----RWVGGSVELHCEAVGSPVPEIQWWFE 58
Query: 586 GE-------PLTSGGRYEITHTD-RYLN-----LRISDARRADRGEYQAHGVNSLGEDVA 632
G+ L G R + H Y + I D G Y+ N +
Sbjct: 59 GQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHL 118
Query: 633 SFLVTVT 639
+ V
Sbjct: 119 TRAPRVK 125
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 89.5 bits (221), Expect = 2e-19
Identities = 48/366 (13%), Positives = 98/366 (26%), Gaps = 47/366 (12%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFT-VQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND 506
+P P+ A T+L + V T VE V W S +
Sbjct: 2 APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG-- 59
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEII 566
L++ L D G C R ++ L ++ PP + L + +
Sbjct: 60 -RRLLLRSVQLHDSGNYSCYRAGRPAGTVH---LLVDVPPEEPQLSCFRKSPLSNV--VC 113
Query: 567 KLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
+ A L + ++ + + S G+ +
Sbjct: 114 EWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFY---- 169
Query: 627 LGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGP 686
+ V +G S+ + + P P
Sbjct: 170 ------IVSMCVASS------------VGSKF----SKTQ--------TFQGCGILQPDP 199
Query: 687 PGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
P + + + ++ W+ P ++ L + + +R S + ++
Sbjct: 200 PANITVTAVARNPRW--LSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQ-H 256
Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALE 805
++ G R+ ++ A+ G E S T + P+ AL
Sbjct: 257 HCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALT 316
Query: 806 DEKPRN 811
K +
Sbjct: 317 TNKDDD 322
Score = 62.2 bits (150), Expect = 3e-10
Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 4/122 (3%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
P PP + + + ++ W+ P ++ L + + +R S +
Sbjct: 196 QPDPPANITVTAVARNPRW--LSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKD 253
Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT 462
++ ++ G R+ ++ A+ G E S T + P+
Sbjct: 254 LQ-HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPM 312
Query: 463 TA 464
A
Sbjct: 313 QA 314
Score = 59.5 bits (143), Expect = 2e-09
Identities = 29/267 (10%), Positives = 58/267 (21%), Gaps = 52/267 (19%)
Query: 540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
L P + + L G+ + L + T W+ S
Sbjct: 1 LAPRRCPAQEVARGVLTSLP---GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG 57
Query: 599 HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSV 658
R L + + D G Y + G + + V P P + + +V
Sbjct: 58 MGRR---LLLRSVQLHDSGNYSCY---RAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNV 111
Query: 659 TLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP 718
W P ++ + P + P
Sbjct: 112 VCEW-GPRSTPSL-TTKAVLLVRKFQNSPAEDFQEP------------------------ 145
Query: 719 VLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 778
++ + + + + Y + + VG +
Sbjct: 146 -----CQYSQESQKFSCQ-----------LAVPEGDSSFYIVSMCVASSVGSKFSKTQTF 189
Query: 779 PLTVTYQRSPAAAPSFIRALHDTTALE 805
Q P A + + L
Sbjct: 190 QGCGILQPDPPANITVTAVARNPRWLS 216
Score = 39.1 bits (90), Expect = 0.006
Identities = 25/152 (16%), Positives = 43/152 (28%), Gaps = 14/152 (9%)
Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP-----YWVRASPH 401
PP +PQL W P L+ + SP + S
Sbjct: 94 PPEEPQLS-CFRKSPLSNVVCEWGPR-STPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQE 151
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHD 461
+ + + Y + + VG + Q P P+ I
Sbjct: 152 SQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDP---PANITV--- 205
Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI 493
TA+ +V + + S+Y+ FE+
Sbjct: 206 -TAVARNPRWLSVTWQDPHSWNSSFYRLRFEL 236
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 83.2 bits (206), Expect = 2e-19
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 451 AAPSFIRALHDT-TALEDEKVEFTVQVEGIPTPKVSWYKDGFEI-FSSRRQRIVTDNDIS 508
+ +F + L + K+ TV++ +V W K+G EI S + +
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
TL I Q +L D+ +C L
Sbjct: 73 TLTISQCSLADDAAYQCVVGGEK----CSTEL 100
Score = 62.0 bits (151), Expect = 8e-12
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 12/111 (10%)
Query: 533 HSITKARLRLEAPPTI--RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
H + + + +L Y+ + + G I+L V +A +WL NG+ +
Sbjct: 3 HHHHHSSMDEKKSTAFQKKLEPAYQ---VSK-GHKIRLTVELAD-HDAEVKWLKNGQEIQ 57
Query: 591 -SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
SG +Y L IS AD YQ +G + S + V +
Sbjct: 58 MSGSKYIFESIGAKRTLTISQCSLADDAAYQC----VVGGEKCSTELFVKE 104
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 83.1 bits (206), Expect = 3e-19
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
PGP Q + SP+ I WEPP Y G PV GY + + V
Sbjct: 7 GPGPVENLQAVSTSPT----SILITWEPPAYANG-PVQGYRLFCTEVSTGKEQ---NIEV 58
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSP 449
+ + GL+ Y R A N G PG ++ +TV T S
Sbjct: 59 DGLSYKLEGLKKFTEYSLRFLAYNRYG---PGVSTDDITVVTLSDSG 102
Score = 83.1 bits (206), Expect = 3e-19
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 12/107 (11%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
PGP Q + SP+ I WEPP Y G PV GY + + V
Sbjct: 7 GPGPVENLQAVSTSPT----SILITWEPPAYANG-PVQGYRLFCTEVSTGKEQ---NIEV 58
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSP 788
+ + GL+ Y R A N G PG ++ +TV T S
Sbjct: 59 DGLSYKLEGLKKFTEYSLRFLAYNRYG---PGVSTDDITVVTLSDSG 102
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 82.5 bits (204), Expect = 5e-19
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P QL + V W PP + G + Y+VE+ R+GS W +
Sbjct: 7 GPDAPRNLQLSLPREA--EGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMW---ASQRA 60
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ L Y R+ A G G S+ ++T + S
Sbjct: 61 ASNFTEIKNLLVNTLYTVRVAAVTSRG---IGNWSDSKSIT-TIKGSGPSS 107
Score = 82.5 bits (204), Expect = 5e-19
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P QL + V W PP + G + Y+VE+ R+GS W +
Sbjct: 7 GPDAPRNLQLSLPREA--EGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMW---ASQRA 60
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ L Y R+ A G G S+ ++T + S
Sbjct: 61 ASNFTEIKNLLVNTLYTVRVAAVTSRG---IGNWSDSKSIT-TIKGSGPSS 107
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 90.6 bits (224), Expect = 7e-19
Identities = 40/260 (15%), Positives = 63/260 (24%), Gaps = 60/260 (23%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGR---------------------YEITHTD 601
G + V G P +GE L G+ ++ ++
Sbjct: 233 GTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASE 292
Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
+ G RP + +G V L
Sbjct: 293 SPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELR 352
Query: 662 WSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG 721
W+ P+D GG + Y V + P+S ++R+
Sbjct: 353 WTPPQDSGGREDIVYSVTCEQ---------CWPESGECGPCEASVRYSE----------- 392
Query: 722 YLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 781
PH + T + VS LEP Y F + A N V S
Sbjct: 393 ----------------PPHGLTRTSVTVSDLEPHMNYTFTVEARNGVS---GLVTSRSFR 433
Query: 782 VTYQRSPAAAPSFIRALHDT 801
P +R +
Sbjct: 434 TASVSINQTEPPKVRLEGRS 453
Score = 86.4 bits (213), Expect = 2e-17
Identities = 28/133 (21%), Positives = 39/133 (29%), Gaps = 18/133 (13%)
Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS------- 392
+PP P + + +RW PP+ GG + Y V +
Sbjct: 329 PCTRPPSAPHYLTAVGMGAKV-----ELRWTPPQDSGGREDIVYSVTCEQCWPESGECGP 383
Query: 393 -PYWVRASPHMVE--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 449
VR S T + VS LEP Y F + A N V S
Sbjct: 384 CEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVS---GLVTSRSFRTASVSIN 440
Query: 450 AAAPSFIRALHDT 462
P +R +
Sbjct: 441 QTEPPKVRLEGRS 453
Score = 75.2 bits (184), Expect = 6e-14
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 10/101 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P K +L S + ++ W P V Y V +R+ G
Sbjct: 440 NQTEPPKVRLEGRSTTS----LSVSWSIPPPQQS-RVWKYEVTYRKKGDSNSYNVRR--T 492
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
E + + L P Y ++ A G G S+
Sbjct: 493 EGFSVTLDDLAPDTTYLVQVQALTQEG---QGAGSKVHEFQ 530
Score = 75.2 bits (184), Expect = 6e-14
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 10/101 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P K +L S + ++ W P V Y V +R+ G
Sbjct: 440 NQTEPPKVRLEGRSTTS----LSVSWSIPPPQQS-RVWKYEVTYRKKGDSNSYNVRR--T 492
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
E + + L P Y ++ A G G S+
Sbjct: 493 EGFSVTLDDLAPDTTYLVQVQALTQEG---QGAGSKVHEFQ 530
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 84.3 bits (208), Expect = 9e-19
Identities = 23/200 (11%), Positives = 45/200 (22%), Gaps = 40/200 (20%)
Query: 463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI--------------- 507
+ + VE T + + W + +T
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 508 --STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEI 565
LII + D C ++ + L A L G+
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQKE-EVQLLVFGLTANSDTHL----------LQGQS 114
Query: 566 IKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVN 625
+ L + P+ + GG+ L +S D G + +
Sbjct: 115 LTLTLESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQ 164
Query: 626 SLGEDVASFLVTVTDRPLPP 645
+ + + V
Sbjct: 165 NQKKVEFKIDIVV--LAFQK 182
Score = 60.0 bits (145), Expect = 2e-10
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 11/93 (11%)
Query: 456 IRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQA 515
+ A DT L+ + + T++ +P V + + TL + Q
Sbjct: 101 LTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPR--------GKNIQGG--KTLSVSQL 150
Query: 516 ALMDEGEIKCTATNRAGHSITKARLRLEA-PPT 547
L D G CT K + + A
Sbjct: 151 ELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 87.1 bits (215), Expect = 1e-18
Identities = 27/228 (11%), Positives = 54/228 (23%), Gaps = 23/228 (10%)
Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT---TALEDEKVEFTVQV 476
++ T + G + V F+ + E ++ +V
Sbjct: 65 EYFCTHNDSRGLETDERKRLYIFVPDPTVG-----FLPNDAEELFIFLTEITEITIPCRV 119
Query: 477 EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT 536
P V+ ++ + D+ I ++ C T +
Sbjct: 120 TD-PQLVVTLHEKK----GDVALPVPYDHQRGFSGIF-----EDRSYICKTTIGDREVDS 169
Query: 537 KARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG---- 592
A + + GE I L + G W + +
Sbjct: 170 DAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV 229
Query: 593 -GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
L I A D G Y + S+ + + +T
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277
Score = 70.5 bits (172), Expect = 4e-13
Identities = 25/197 (12%), Positives = 49/197 (24%), Gaps = 19/197 (9%)
Query: 473 TVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG 532
T + + V W + E + S L + +D GE CT + G
Sbjct: 17 TFVLTCSGSAPVVWERMSQEP-PQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG 75
Query: 533 -HSITKARLRLEAPPTIRLP---KQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEP 588
+ + RL + P E + I + P
Sbjct: 76 LETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCR-VTDPQLVVTLHEKKGD 134
Query: 589 LTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP--- 645
+ Y + + + + Y E + +
Sbjct: 135 VALPVPY---------DHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVS 185
Query: 646 -GKAKVVMTLGKSVTLS 661
+ V+ G+++TL
Sbjct: 186 VNAVQTVVRQGENITLM 202
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 81.0 bits (200), Expect = 2e-18
Identities = 20/120 (16%), Positives = 32/120 (26%), Gaps = 13/120 (10%)
Query: 441 LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR 500
LTV Y P + LE V G P P + W +G + S+
Sbjct: 3 LTVYY------PPRVVSLEEPELRLE---HCIEFVVRGNPPPTLHWLHNGQPLRESKIIH 53
Query: 501 IVTDND----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYED 556
+ + L+ ++ + G A N G + P
Sbjct: 54 VEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSPTP 113
Score = 76.4 bits (188), Expect = 1e-16
Identities = 27/111 (24%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEIT 598
L + PP + ++ E L I+ V G PPPT WLHNG+PL +
Sbjct: 2 ALTVYYPPRVVSLEEPELRL----EHCIEFVVR--GNPPPTLHWLHNGQPLRESKIIHVE 55
Query: 599 HTDRYLN----LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
+ L + + G Y N LG + P P
Sbjct: 56 YYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPV 106
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 80.8 bits (200), Expect = 2e-18
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
PGP + SP+ T+ WE P G + Y + + G+ V
Sbjct: 17 LPGPAPNLRAYAASPT----SITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVD---V 68
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
++GL+ Y FR+ A N G PG + + V
Sbjct: 69 SSHSYTINGLKKYTEYSFRVVAYNKHG---PGVSTPDVAVR 106
Score = 80.8 bits (200), Expect = 2e-18
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
PGP + SP+ T+ WE P G + Y + + G+ V
Sbjct: 17 LPGPAPNLRAYAASPT----SITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVD---V 68
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
++GL+ Y FR+ A N G PG + + V
Sbjct: 69 SSHSYTINGLKKYTEYSFRVVAYNKHG---PGVSTPDVAVR 106
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 82.6 bits (204), Expect = 3e-18
Identities = 36/193 (18%), Positives = 57/193 (29%), Gaps = 29/193 (15%)
Query: 451 AAPSFIRALH--DTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDI 507
A P + L L+++ V T Q P + W+ +G I + +
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ--------- 51
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
+A D GE C + L + + E F+ GE I
Sbjct: 52 -PSYRFKANNNDSGEYTCQTGQTSLS--DPVHLTVLFEWLVLQTPHLE----FQEGETIM 104
Query: 568 LK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNS 626
L+ S P + NG+ I A + G+Y G
Sbjct: 105 LRCHSWKDKPLVKVTFFQNGKSQKFSHLDP--------TFSIPQANHSHSGDYHCTGNIG 156
Query: 627 LGEDVASFLVTVT 639
+S VT+T
Sbjct: 157 YTL-FSSKPVTIT 168
Score = 55.2 bits (133), Expect = 7e-09
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 18/101 (17%)
Query: 435 GPLSEP--LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGF 491
LS+P LTV ++ ++ E E + P KV+++++G
Sbjct: 73 TSLSDPVHLTVLFE------WLVLQT-PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK 125
Query: 492 EIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG 532
S T I QA G+ CT
Sbjct: 126 SQKFSHLD--------PTFSIPQANHSHSGDYHCTGNIGYT 158
Score = 46.3 bits (110), Expect = 8e-06
Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 17/126 (13%)
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDR 602
APP L + + + + + L A P + +W HNG + + +
Sbjct: 1 APPKAVLKLEPPWINVLQ-EDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ-------- 51
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTL-- 660
A D GEY + D +TV L + G+++ L
Sbjct: 52 --PSYRFKANNNDSGEYTCQTGQTSLSD--PVHLTVLFEWLVLQTPHLEFQEGETIMLRC 107
Query: 661 -SWSEP 665
SW +
Sbjct: 108 HSWKDK 113
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 85.2 bits (211), Expect = 4e-18
Identities = 35/202 (17%), Positives = 61/202 (30%), Gaps = 64/202 (31%)
Query: 624 VNSLGE-DVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY-- 680
+ A +VT + PP +A+V ++T+SW + I + V+
Sbjct: 94 LKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTKTET----ITGFQVDAVP 149
Query: 681 ------------------------------FR-------------------PPGPPGKPQ 691
P +
Sbjct: 150 ANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLR 209
Query: 692 LLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSG 751
L +P + + W+PP + + GY++++ + GSP TE ++G
Sbjct: 210 FLATTP----NSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITG 261
Query: 752 LEPGWRYQFRITAENVVGFSEP 773
LEPG Y + A SEP
Sbjct: 262 LEPGTEYTIYVIALKNNQKSEP 283
Score = 80.2 bits (198), Expect = 2e-16
Identities = 29/233 (12%), Positives = 53/233 (22%), Gaps = 74/233 (31%)
Query: 624 VNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY--- 680
+ ++ P K S++ W+ P + Y V
Sbjct: 3 HHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPPNVQ----LTGYRVRVTPK 58
Query: 681 ------------------------------FR---------------------PPGPPGK 689
PP +
Sbjct: 59 EKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRR 118
Query: 690 PQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMV 749
++ TI W + G+ V+ ++ + + +
Sbjct: 119 ARVT----DATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRT-IKPDVRSYTI 169
Query: 750 SGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
+GL+PG Y+ + N S P V + APS +R L T
Sbjct: 170 TGLQPGTDYKIYLYTLNDNARSSP-------VVIDASTAIDAPSNLRFLATTP 215
Score = 75.6 bits (186), Expect = 6e-15
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
+ + + P + L +P + + W+PP + + GY+++
Sbjct: 184 TLNDNARSSPVVIDASTAIDAPSNLRFLATTP----NSLLVSWQPPR----ARITGYIIK 235
Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
+ + GSP TE ++GLEPG Y + A SEP
Sbjct: 236 YEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP 283
Score = 74.4 bits (183), Expect = 2e-14
Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 13/124 (10%)
Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRAS 399
P + +P+ + +W PP + GY V ++
Sbjct: 16 FQGPAIPAPTDLKFTQVTPT----SLSAQWTPP----NVQLTGYRVRVTPKEKTGPMKEI 67
Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRAL 459
+ + ++VSGL +Y+ + A S P ++ + T + + P R
Sbjct: 68 NLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRP---AQGVVTTLE--NVSPPRRARVT 122
Query: 460 HDTT 463
T
Sbjct: 123 DATE 126
Score = 71.8 bits (176), Expect = 1e-13
Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 16/120 (13%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
PP + ++ TI W + G+ V+ ++ +
Sbjct: 112 NVSPPRRARVT----DATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRT-IKP 162
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 463
+ ++GL+PG Y+ + N S P V + APS +R L T
Sbjct: 163 DVRSYTITGLQPGTDYKIYLYTLNDNARSSP-------VVIDASTAIDAPSNLRFLATTP 215
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 79.0 bits (195), Expect = 6e-18
Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
++ S + + ++ ++ ++W +DG ++ S R RI +
Sbjct: 1 GSSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE----E 55
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLR-LEAPPT 547
+ + + D G C ++ +G T + +A P+
Sbjct: 56 VEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPS 94
Score = 78.6 bits (194), Expect = 9e-18
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
+ + + + L G++++L+ + + WL +G L R IT
Sbjct: 2 SSGSSGVEVES---FLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESNRTRITGE--- 54
Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPG 646
+ + D+ AD G Y + G D F V V+D P G
Sbjct: 55 -EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL-PSG 95
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 85.3 bits (210), Expect = 1e-17
Identities = 44/332 (13%), Positives = 81/332 (24%), Gaps = 57/332 (17%)
Query: 337 LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV 396
+ C + + +L W + D P+ L E+R + +
Sbjct: 27 IKCPLFEHFLKFNYSTAHSAGLTL-----IWYWTRQDRDLEEPINFRLPENRISKEKDVL 81
Query: 397 RASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFI 456
P ++ D +G Y N S+ + + + S +
Sbjct: 82 WFRPTLLND-----TG-----NYTC--MLRNTTYCSK-----VAFPLEVVQKDSCFNSPM 124
Query: 457 RALHDTTALEDEKVEFT-----VQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLI 511
+ +E T P ++WY ++I + + L
Sbjct: 125 KLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP----EGMNLS 180
Query: 512 IHQAALMDEGEIKCTATNRAG----------HSITKARLRLEAPPTIRLPKQYEDGLLFE 561
A + + G C T + PP I P + E
Sbjct: 181 FLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVV-YEKE 239
Query: 562 MGEIIKLK----VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL----------NLR 607
GE + + S W +G+ + L
Sbjct: 240 PGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILS 299
Query: 608 ISDARRADRG-EYQAHGVNSLGEDVASFLVTV 638
I D Y H ++ GE + V
Sbjct: 300 IKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Score = 57.2 bits (137), Expect = 1e-08
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 19/124 (15%)
Query: 441 LTVTYQRSPAAAPSFIRALHDTTALE---DEKVEFTVQV----EGIPTPKVSWYKDGFEI 493
+ V A P I + +D E E++ V +V W DG +
Sbjct: 213 VKVV-GSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP 271
Query: 494 FSSRRQRIVT----------DNDISTLIIHQAALMDEG-EIKCTATNRAGHSITKARLRL 542
+ + L I + D C A + G A+++
Sbjct: 272 DDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Query: 543 EAPP 546
+ P
Sbjct: 332 KVPA 335
Score = 42.5 bits (99), Expect = 5e-04
Identities = 12/88 (13%), Positives = 20/88 (22%), Gaps = 5/88 (5%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYL-----NLRISDARRADRG 617
+K S A T W + + + L D G
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTG 92
Query: 618 EYQAHGVNSLGEDVASFLVTVTDRPLPP 645
Y N+ +F + V +
Sbjct: 93 NYTCMLRNTTYCSKVAFPLEVVQKDSCF 120
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 78.6 bits (194), Expect = 1e-17
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 7/101 (6%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND-----I 507
I L T D V+G P P + W+ +G + S+
Sbjct: 4 APTITFLESPT--SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYH 61
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI 548
L + M+ G+ A N G + P I
Sbjct: 62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
Score = 77.1 bits (190), Expect = 4e-17
Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 11/105 (10%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEI----- 597
PTI + I V G P P +W +NG L
Sbjct: 2 HFAPTITFLESPTSD----HHWCIPFTVK--GNPKPALQWFYNGAILNESKYICTKIHVT 55
Query: 598 THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
HT+ + L++ + + G+Y N G+D P
Sbjct: 56 NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 78.4 bits (193), Expect = 1e-17
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 345 PGPPGKPQLLPDSPSLDRDV--FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
P P R + W+PPE + GY++E R GS W P +
Sbjct: 4 GSSGLSP---PRGLVAVRTPRGVLLHWDPPE-LVPKRLDGYVLE-GRQGSQGWEVLDPAV 58
Query: 403 -VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+TEL+V GL Y+FR+ A S+P T S + PS
Sbjct: 59 AGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSN-----TANVSTSGLSGPS 106
Score = 78.4 bits (193), Expect = 1e-17
Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 13/113 (11%)
Query: 684 PGPPGKPQLLPDSPSLDRDV--FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
P P R + W+PPE + GY++E R GS W P +
Sbjct: 4 GSSGLSP---PRGLVAVRTPRGVLLHWDPPE-LVPKRLDGYVLE-GRQGSQGWEVLDPAV 58
Query: 742 -VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+TEL+V GL Y+FR+ A S+P T S + PS
Sbjct: 59 AGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSN-----TANVSTSGLSGPS 106
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 79.0 bits (195), Expect = 2e-17
Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASPHM 402
PGPP + W+PP G +L Y + HR +
Sbjct: 27 VPGPPMGILFPEVRT----TSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLA 81
Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ +GL+P Y FRITA+ G G +E L VT + PS
Sbjct: 82 PSARQYTATGLKPESVYLFRITAQTRKG---WGEAAEALVVT--TEKRSGPS 128
Score = 79.0 bits (195), Expect = 2e-17
Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGS-PYWVRASPHM 741
PGPP + W+PP G +L Y + HR +
Sbjct: 27 VPGPPMGILFPEVRT----TSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLA 81
Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ +GL+P Y FRITA+ G G +E L VT + PS
Sbjct: 82 PSARQYTATGLKPESVYLFRITAQTRKG---WGEAAEALVVT--TEKRSGPS 128
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 81.4 bits (200), Expect = 2e-17
Identities = 31/195 (15%), Positives = 53/195 (27%), Gaps = 14/195 (7%)
Query: 463 TALEDEKVEFTVQVEGIPTPKVSWY-KDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG 521
T +++ V I VS + + F RI D+ I + G
Sbjct: 20 TENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKG-FTIPSYMISYAG 77
Query: 522 EIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLF-EMGEIIKL--KVSMAGMPPP 578
+ C A + + + I + +GE + L
Sbjct: 78 MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 579 TARWLHNGEPLTSGG---RYEITHTDRYLN-----LRISDARRADRGEYQAHGVNSLGED 630
W + R T + + L I R+D+G Y + L
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 197
Query: 631 VASFLVTVTDRPLPP 645
S V V + P+
Sbjct: 198 KNSTFVRVHEDPIEG 212
Score = 58.6 bits (141), Expect = 1e-09
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 10/117 (8%)
Query: 442 TVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV--SWYKDGFEIFSSR-- 497
+ + H EK+ + +W + +
Sbjct: 95 YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV 154
Query: 498 -RQRIVTDND-----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTI 548
R +STL I D+G C A++ +R+ P
Sbjct: 155 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE 211
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 78.3 bits (193), Expect = 2e-17
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS----RRQRIVTDND- 506
P + D + E + EG PTP + WYK G + + R R++ +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 507 --ISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPP 546
++ + + DEG C A N G +++ A L + A
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
Score = 45.6 bits (108), Expect = 6e-06
Identities = 27/108 (25%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH--- 599
+ PP I + D L+ GE L G P PT W GE + + +H
Sbjct: 7 DFPPRIV--EHPSD-LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 600 ----TDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFLVTVTDRP 642
+ +L + R D G Y N LGE V + V
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 82.4 bits (203), Expect = 3e-17
Identities = 37/271 (13%), Positives = 62/271 (22%), Gaps = 43/271 (15%)
Query: 375 DGGSPVLGYLVEHRRTG---SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGF 431
DG PV V +P + + V+ + G +
Sbjct: 28 DGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGT-QRLTCAVILGNQS 86
Query: 432 SEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGF 491
E + +T+ P+ L E +V + ++
Sbjct: 87 QE---TLQTVTIYS------FPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP 137
Query: 492 EIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAG----HSITKARLRLEAPPT 547
++ T D + C+AT H LR+ P
Sbjct: 138 LGPRAQLLLKATPED------------NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR 185
Query: 548 IRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLR 607
+ + E G P P + L +G G
Sbjct: 186 LDERDCPGNWTWPE-NSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE------------- 231
Query: 608 ISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
R G Y ++ GE V V
Sbjct: 232 SVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262
Score = 60.5 bits (146), Expect = 6e-10
Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 22/125 (17%)
Query: 424 TAEN-VVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH--DTTALEDEKVEFTVQVEGIP 480
+A V G + L V Y P + T E+ + Q G P
Sbjct: 160 SATLEVAGQLIHKNQTRELRVLY------GPRLDERDCPGNWTWPENSQQTPMCQAWGNP 213
Query: 481 TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
P++ KDG VT + EG C A + G + +
Sbjct: 214 LPELKCLKDGTFPLPIGESVTVTRD-------------LEGTYLCRARSTQGEVTREVTV 260
Query: 541 RLEAP 545
+ +P
Sbjct: 261 NVLSP 265
Score = 39.7 bits (92), Expect = 0.004
Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 11/123 (8%)
Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP---PTARWLHNGEPLTSGGRYEITHTD 601
PP + P+ + E+ + S+ G+ P + L Y
Sbjct: 6 PPQLVSPR------VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS 59
Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVM-TLGKSVTL 660
++ ++ A + VT+ P P + G VT+
Sbjct: 60 AKASVSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTV 118
Query: 661 SWS 663
Sbjct: 119 KCE 121
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 78.1 bits (192), Expect = 3e-17
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 15/115 (13%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG----YLVEHRRTGSPYWVRAS 399
P P P + + + W+ + + + +E +
Sbjct: 15 PLSKPHPPVVG----KVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIY 70
Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
T +V GLEP Y+FR+ + G E S ++V + + PS
Sbjct: 71 TG--YATRHVVEGLEPRTLYKFRLKVTSPSGEYEY---SPVVSVA--TTRESGPS 118
Score = 78.1 bits (192), Expect = 3e-17
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 15/115 (13%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLG----YLVEHRRTGSPYWVRAS 738
P P P + + + W+ + + + +E +
Sbjct: 15 PLSKPHPPVVG----KVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIY 70
Query: 739 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
T +V GLEP Y+FR+ + G E S ++V + + PS
Sbjct: 71 TG--YATRHVVEGLEPRTLYKFRLKVTSPSGEYEY---SPVVSVA--TTRESGPS 118
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 77.4 bits (191), Expect = 3e-17
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 10/113 (8%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P ++ + W+PP G + Y++ + + +
Sbjct: 8 PTSAPKDLTVITREGK--PRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETI 64
Query: 404 ED--TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ L Y FRI A N G GPLS+P+ + PS
Sbjct: 65 SGDRLTHQIMDLNLDTMYYFRIQARNSKG---VGPLSDPILFRTL--KVSGPS 112
Score = 77.4 bits (191), Expect = 3e-17
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 10/113 (8%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P ++ + W+PP G + Y++ + + +
Sbjct: 8 PTSAPKDLTVITREGK--PRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETI 64
Query: 743 ED--TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ L Y FRI A N G GPLS+P+ + PS
Sbjct: 65 SGDRLTHQIMDLNLDTMYYFRIQARNSKG---VGPLSDPILFRTL--KVSGPS 112
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 76.3 bits (188), Expect = 5e-17
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 9/95 (9%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
S + V T +V P+P++ W KDG +
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDG--------VPLPLPPS- 56
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542
LI+ + D+G C AT+ + + +
Sbjct: 57 PVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 57.8 bits (140), Expect = 2e-10
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 12/97 (12%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDR 602
+ + + G G + L + P P W+ +G PL +
Sbjct: 8 LEEVQLVVEPE---GGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP----SPV-- 58
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
L + + D+G Y +S S V+++
Sbjct: 59 ---LILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 76.4 bits (188), Expect = 5e-17
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
P + + + LL G++++L+ + + WL +G L R IT
Sbjct: 8 QPWGVPVEVES---LLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGE--- 60
Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
+ + D+ AD G Y + G D F V V+
Sbjct: 61 -EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95
Score = 71.4 bits (175), Expect = 3e-15
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 442 TVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRI 501
T+ Q P + + ++ ++ ++W +DG ++ S R RI
Sbjct: 2 TLPEQAQP---WGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRI 57
Query: 502 VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
+ + + + D G C ++ +G T +
Sbjct: 58 TGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 79.6 bits (195), Expect = 6e-17
Identities = 28/194 (14%), Positives = 52/194 (26%), Gaps = 30/194 (15%)
Query: 465 LEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEI 523
+ D + + +V + ++W+KDG I D + A G
Sbjct: 12 VYDYQEDGSVLLTCDAEAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMY 64
Query: 524 KCTATNRAG-------------HSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKV 570
+C + + A + +A + KV
Sbjct: 65 QCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKV 124
Query: 571 SMAG---------MPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
S++G P W HN + + + +D + G Y
Sbjct: 125 SISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 184
Query: 622 HGVNSLGEDVASFL 635
+ S ED +L
Sbjct: 185 YPRGSKPEDANFYL 198
Score = 57.6 bits (138), Expect = 2e-09
Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 3/83 (3%)
Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG 521
++ V T P ++ W + I + + ++ + + L G
Sbjct: 123 KVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSG 180
Query: 522 EIKCTATNRAGHSITKARLRLEA 544
C L L A
Sbjct: 181 YYVCYPRGSKP-EDANFYLYLRA 202
Score = 41.0 bits (95), Expect = 8e-04
Identities = 11/97 (11%), Positives = 25/97 (25%), Gaps = 7/97 (7%)
Query: 574 GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS 633
W +G+ + + + + RG YQ G + + +
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDKKK-------WNLGSNAKDPRGMYQCKGSQNKSKPLQV 78
Query: 634 FLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGG 670
+ + AK S+ ++ G
Sbjct: 79 YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMG 115
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 76.7 bits (189), Expect = 9e-17
Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 11/111 (9%)
Query: 682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
R P P + P S+ + W PPE V GY + + +
Sbjct: 26 RVPEVPSSLHVRPLVTSI-----VVSWTPPENQNI-VVRGYAIGYGIGSPHAQTIKVDY- 78
Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 791
+ + L+P Y + A N VG PL E + P++
Sbjct: 79 -KQRYYTIENLDPSSHYVITLKAFNNVGEGI--PLYESAVTRPHTSGPSSG 126
Score = 76.3 bits (188), Expect = 1e-16
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 11/111 (9%)
Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
+ P P + P S+ + W PPE V GY + + +
Sbjct: 26 RVPEVPSSLHVRPLVTSI-----VVSWTPPENQNI-VVRGYAIGYGIGSPHAQTIKVDY- 78
Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 452
+ + L+P Y + A N VG PL E + P++
Sbjct: 79 -KQRYYTIENLDPSSHYVITLKAFNNVGEGI--PLYESAVTRPHTSGPSSG 126
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 78.9 bits (194), Expect = 1e-16
Identities = 26/198 (13%), Positives = 56/198 (28%), Gaps = 27/198 (13%)
Query: 463 TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS------SRRQRIVTDNDIS---TLIIH 513
T V + ++ + + S R ++ + I
Sbjct: 13 TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72
Query: 514 QAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA 573
+ D G+ +C A ++++A + E ++L
Sbjct: 73 SVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEV----PGTGEVQLTCQAR 128
Query: 574 GMPPPTARWLHNGEPL------TSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
G P W + P T G Y++T LR+ + + N+
Sbjct: 129 GYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSV-----LRL---KPQPSRNFSCMFWNAH 180
Query: 628 GEDVASFLVTVTDRPLPP 645
+++ S ++ R P
Sbjct: 181 MKELTSAIIDPLSRMEPK 198
Score = 53.5 bits (128), Expect = 5e-08
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
Query: 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIV-TDNDISTLIIHQAALM 518
+V+ T Q G P +VSW +S + S L +
Sbjct: 111 RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQ--- 167
Query: 519 DEGEIKCTATNRAGHSITKARLRLEAPPTIRLPK 552
C N +T A + + ++P+
Sbjct: 168 PSRNFSCMFWNAHMKELTSAIIDPLSRMEPKVPR 201
Score = 38.9 bits (90), Expect = 0.004
Identities = 10/97 (10%), Positives = 20/97 (20%), Gaps = 9/97 (9%)
Query: 574 GMPPPTARWLHNGEPLTSG------GRYEITH---TDRYLNLRISDARRADRGEYQAHGV 624
+ R + I + D G+Y+ +
Sbjct: 28 RRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVI 87
Query: 625 NSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
D V V + + + V L+
Sbjct: 88 CGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLT 124
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 76.6 bits (188), Expect = 1e-16
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 12/114 (10%)
Query: 448 SPAAAPSFIRALHDTTALEDEKVEFTVQVEGIP---TPKVSWYKDGF-EIFSSRRQRI-- 501
S ++ FI T E + F +V+ P + W+K + ++ S + +
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62
Query: 502 ------VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIR 549
+ + I +A G +C T + L +
Sbjct: 63 KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
Score = 53.1 bits (127), Expect = 2e-08
Identities = 17/97 (17%), Positives = 27/97 (27%), Gaps = 12/97 (12%)
Query: 563 GEIIKLKVSMAGMP---PPTARWLHN---------GEPLTSGGRYEITHTDRYLNLRISD 610
GE I + PT +W G+ L +E ++I
Sbjct: 22 GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIK 81
Query: 611 ARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGK 647
A+ G Y+ D SF + V +
Sbjct: 82 AKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPN 118
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 76.0 bits (187), Expect = 1e-16
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P ++ SPS ++ W P G VL Y V++ G+
Sbjct: 7 GPPAVSDIRVTRSSPS----SLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKT 61
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ + GL+ G Y ++ A + G GP + Q + PS
Sbjct: 62 SENRAELRGLKRGASYLVQVRARSEAG---YGPFGQE--HHSQTQLDSGPS 107
Score = 76.0 bits (187), Expect = 1e-16
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P ++ SPS ++ W P G VL Y V++ G+
Sbjct: 7 GPPAVSDIRVTRSSPS----SLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKT 61
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ + GL+ G Y ++ A + G GP + Q + PS
Sbjct: 62 SENRAELRGLKRGASYLVQVRARSEAG---YGPFGQE--HHSQTQLDSGPS 107
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 75.9 bits (187), Expect = 1e-16
Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 17/113 (15%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--VRASPH 401
P P + P + + + W PP + V GY++ + GSPY VR
Sbjct: 17 VPDQPSSLHVRPQTNCI-----IMSWTPPL-NPNIVVRGYIIGYGV-GSPYAETVRVDSK 69
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ LE Y + A N G PL E T RS + PS
Sbjct: 70 ---QRYYSIERLESSSHYVISLKAFNNAGEGV--PLYESATT---RSITSGPS 114
Score = 75.9 bits (187), Expect = 1e-16
Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 17/113 (15%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--VRASPH 740
P P + P + + + W PP + V GY++ + GSPY VR
Sbjct: 17 VPDQPSSLHVRPQTNCI-----IMSWTPPL-NPNIVVRGYIIGYGV-GSPYAETVRVDSK 69
Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ LE Y + A N G PL E T RS + PS
Sbjct: 70 ---QRYYSIERLESSSHYVISLKAFNNAGEGV--PLYESATT---RSITSGPS 114
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 77.9 bits (192), Expect = 3e-16
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 12/120 (10%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSPYWVRASP 400
P PP Q S I W ++ + Y V + +
Sbjct: 4 PMMPPVGVQASILSHDT----IRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA 59
Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSFIRAL 459
+ +V+GL+P Y+F + S T++ P + P + +
Sbjct: 60 N-ATTLSYLVTGLKPNTLYEFSVMVTKGRR---SSTWSMTAHGTTFELVPTSPPKDVTVV 115
Score = 77.9 bits (192), Expect = 3e-16
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 12/120 (10%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSPYWVRASP 739
P PP Q S I W ++ + Y V + +
Sbjct: 4 PMMPPVGVQASILSHDT----IRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA 59
Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSFIRAL 798
+ +V+GL+P Y+F + S T++ P + P + +
Sbjct: 60 N-ATTLSYLVTGLKPNTLYEFSVMVTKGRR---SSTWSMTAHGTTFELVPTSPPKDVTVV 115
Score = 73.3 bits (180), Expect = 1e-14
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P PP ++ + W+PP G + GY++ + + V
Sbjct: 105 PTSPPKDVTVVSKEGK--PKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPV 161
Query: 404 EDTELM--VSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 449
L + L Y F+I A N G GP+SE + ++
Sbjct: 162 VGNRLTHQIQELTLDTPYYFKIQARNSKG---MGPMSEAVQFRTPKAH 206
Score = 73.3 bits (180), Expect = 1e-14
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P PP ++ + W+PP G + GY++ + + V
Sbjct: 105 PTSPPKDVTVVSKEGK--PKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPV 161
Query: 743 EDTELM--VSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 788
L + L Y F+I A N G GP+SE + ++
Sbjct: 162 VGNRLTHQIQELTLDTPYYFKIQARNSKG---MGPMSEAVQFRTPKAH 206
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 78.3 bits (193), Expect = 4e-16
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-----WVRA 398
P PG+ S + V + W P G + Y V + +
Sbjct: 98 VPSEPGRLAFNVVSST----VTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKV 152
Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV--TYQRSPAAAPSF 455
++ L++ L Y++ + A N G GP E + T + P + P
Sbjct: 153 LVDNPKNRMLLIENLRESQPYRYTVKARNGAG---WGPEREAIINLATQPKRPMSIPII 208
Score = 78.3 bits (193), Expect = 4e-16
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-----WVRA 737
P PG+ S + V + W P G + Y V + +
Sbjct: 98 VPSEPGRLAFNVVSST----VTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKV 152
Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV--TYQRSPAAAPSF 794
++ L++ L Y++ + A N G GP E + T + P + P
Sbjct: 153 LVDNPKNRMLLIENLRESQPYRYTVKARNGAG---WGPEREAIINLATQPKRPMSIPII 208
Score = 68.6 bits (168), Expect = 6e-13
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 12/115 (10%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
G P P W PP +GY V++ G
Sbjct: 5 DLGAPQNPNAKAAGSRK----IHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLD-S 55
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
+ + ++ L P Y+ ++ A G GP S ++ + + P +
Sbjct: 56 KVPSVELTNLYPYCDYEMKVCAYGAQG---EGPYSSLVSCRTHQEVPSEPGRLAF 107
Score = 68.6 bits (168), Expect = 6e-13
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 12/115 (10%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
G P P W PP +GY V++ G
Sbjct: 5 DLGAPQNPNAKAAGSRK----IHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLD-S 55
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
+ + ++ L P Y+ ++ A G GP S ++ + + P +
Sbjct: 56 KVPSVELTNLYPYCDYEMKVCAYGAQG---EGPYSSLVSCRTHQEVPSEPGRLAF 107
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 79.1 bits (195), Expect = 5e-16
Identities = 39/218 (17%), Positives = 65/218 (29%), Gaps = 25/218 (11%)
Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
+P P + S + + W+ P ++ +L Y V R S +
Sbjct: 3 RPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----NY 58
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHD 461
V T+L + RY +T N+VG S+ + ++A
Sbjct: 59 TVNATKL--TVNLTNDRYLATLTVRNLVGKSDA---AVLTIPACDFQATHPVMDLKAFPK 113
Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG 521
L VE+T E + + W + + T + + E
Sbjct: 114 DNML---WVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGN---LAES 167
Query: 522 ---EIKCTATNRAGH---SITKARLRLEAP---PTIRL 550
I T G KA L+ P PT+R
Sbjct: 168 KCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRT 205
Score = 68.7 bits (168), Expect = 2e-12
Identities = 26/190 (13%), Positives = 39/190 (20%), Gaps = 62/190 (32%)
Query: 657 SVTLSWSE-PEDDGGCKIGNYIVEYFR--------------------------------- 682
+V L W P + KI +Y V R
Sbjct: 24 TVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNL 83
Query: 683 -----------------PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 725
P + P L + W P +L + V
Sbjct: 84 VGKSDAAVLTIPACDFQATHPVMDLKAFPKDNML-----WVEWTTPRESVKKYILEWCVL 138
Query: 726 HRRTGSPY-WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
+ W + + L Y +T G PG
Sbjct: 139 SDKAPCITDWQQEDGT--VHRTYLRGNLAESKCYLITVTPVYADG---PGSPESIKAYLK 193
Query: 785 QRSPAAAPSF 794
Q P+ P+
Sbjct: 194 QAPPSKGPTV 203
Score = 67.9 bits (166), Expect = 2e-12
Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 10/123 (8%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
P P + S + + W+ P ++ +L Y V R S +
Sbjct: 4 PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----NYT 59
Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT 801
V T+L + RY +T N+VG S+ + ++A
Sbjct: 60 VNATKL--TVNLTNDRYLATLTVRNLVGKSDA---AVLTIPACDFQATHPVMDLKAFPKD 114
Query: 802 TAL 804
L
Sbjct: 115 NML 117
Score = 63.3 bits (154), Expect = 9e-11
Identities = 27/207 (13%), Positives = 49/207 (23%), Gaps = 63/207 (30%)
Query: 624 VNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGK--SVTLSWSEPEDDGGCKIGNYIVEY- 680
N +G+ A+ L + K + + W+ P + + YI+E+
Sbjct: 81 RNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRES----VKKYILEWC 136
Query: 681 ---------------------------FRP---------------PGPPGK-----PQLL 693
PG P Q
Sbjct: 137 VLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAP 196
Query: 694 PDSP------SLDRDVFTIRWEPPEYDGG-SPVLGYLVEHRRTGSPYWVRASPHMVEDTE 746
P + ++ + W+ D + Y + +R TE
Sbjct: 197 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDS--SHTE 254
Query: 747 LMVSGLEPGWRYQFRITAENVVGFSEP 773
+S L Y R+ A G +
Sbjct: 255 YTLSSLTSDTLYMVRMAAYTDEGGKDG 281
Score = 51.7 bits (124), Expect = 6e-07
Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 7/93 (7%)
Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG-SPVLGYLVEHRRTGSPYWVRASPH 401
PP + + + W+ D + Y + +R
Sbjct: 195 APPSKGPTVRTKKVGKN----EAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDS 250
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
TE +S L Y R+ A G +
Sbjct: 251 --SHTEYTLSSLTSDTLYMVRMAAYTDEGGKDG 281
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 73.1 bits (180), Expect = 6e-16
Identities = 10/100 (10%), Positives = 26/100 (26%), Gaps = 10/100 (10%)
Query: 450 AAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIST 509
+ + + G P P W+K+ + ++
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---------L 51
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTI 548
++ L +G C N +K + ++ +
Sbjct: 52 YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 91
Score = 54.6 bits (132), Expect = 2e-09
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 13/98 (13%)
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRY 603
+ I + G + L+ G P P +W N PLT +
Sbjct: 2 SKLQICVEPT---SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL------- 51
Query: 604 LNLRISDARRADRGEYQAHGVNSLGEDVAS-FLVTVTD 640
+ +G Y H N + + + +
Sbjct: 52 --YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 75.3 bits (185), Expect = 1e-15
Identities = 30/185 (16%), Positives = 50/185 (27%), Gaps = 27/185 (14%)
Query: 461 DTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
+ E V T W+ +G + S+L I A D
Sbjct: 13 WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFED 62
Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPP 578
GE KC S ++ + G+ + L+
Sbjct: 63 SGEYKCQHQQ-VNESEPVYLEVFSDWLLLQASAEV-----VMEGQPLFLRCHGWRNWDVY 116
Query: 579 TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFLVT 637
+ +GE L + + N+ I++A D G Y G + +T
Sbjct: 117 KVIYYKDGEALKY------WYENH--NISITNATVEDSGTYYCTGKVWQLDYESEPLNIT 168
Query: 638 VTDRP 642
V P
Sbjct: 169 VIKAP 173
Score = 56.1 bits (135), Expect = 4e-09
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 15/117 (12%)
Query: 435 GPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEI 493
SEP+ + + +E + + KV +YKDG
Sbjct: 73 VNESEPVYLEVFSDW-----LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDG--- 124
Query: 494 FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPTIR 549
+ + + + I A + D G CT ++ + + P +
Sbjct: 125 -----EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREK 176
Score = 43.7 bits (103), Expect = 7e-05
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 16/107 (14%)
Query: 563 GEIIKLKVSMAGMPPP-TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
GE + L + + +W HNG +L I +A+ D GEY+
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKC 68
Query: 622 HGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTL---SWSEP 665
+ V L V+ G+ + L W
Sbjct: 69 QHQQVNESEPVYLEVFSDWLLLQASAEVVME--GQPLFLRCHGWRNW 113
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 80.4 bits (197), Expect = 1e-15
Identities = 37/251 (14%), Positives = 68/251 (27%), Gaps = 31/251 (12%)
Query: 442 TVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKV-SWYKDG---------- 490
+ + P + T V + K S YK
Sbjct: 102 SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDS 161
Query: 491 ---FEIFSSRRQRIV---TDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
+ R R+ T + +++I+Q L D G+ C A + + + A L++
Sbjct: 162 SGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLK 221
Query: 545 PPTIRLPKQYEDGLLF------EMGEIIKLKVSMAGMPPPTARWLHNG-EPLTSGGRYEI 597
P + + + F E+ + K + G GR +
Sbjct: 222 PEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILL 281
Query: 598 TH--TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLP-----PGKAKV 650
D ++ I+ R+ D G Y + S + V
Sbjct: 282 NPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVV 341
Query: 651 VMTLGKSVTLS 661
G SV +
Sbjct: 342 KGVAGSSVAVL 352
Score = 65.0 bits (157), Expect = 8e-11
Identities = 35/261 (13%), Positives = 69/261 (26%), Gaps = 36/261 (13%)
Query: 432 SEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGF 491
S+ +Q + R+ + V + + ++
Sbjct: 311 SDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWE 370
Query: 492 EIFSSRRQRIVT-------------------DNDISTLIIHQAALMDEGEIKCTATNRAG 532
+ R +V N T+I++Q D G C
Sbjct: 371 GAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTL 430
Query: 533 HSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMA----GMPPPTARWLHNGEP 588
T +E P +++P +GE +K+ +W + G
Sbjct: 431 WRTTVEIKIIEGEPNLKVPGNVT----AVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQ 486
Query: 589 LT------SGGRYEITHTD-RYLNLRISDARRADRGEYQ-AHGVNSLGEDVASFLVTVTD 640
+ + R ++L ++ RAD G Y + A+ V V +
Sbjct: 487 ALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEE 546
Query: 641 RPLPPGKAKVVMTLGKSVTLS 661
R G V + +
Sbjct: 547 RK-AAGSRDVSLAKADAAPDE 566
Score = 64.6 bits (156), Expect = 1e-10
Identities = 33/268 (12%), Positives = 61/268 (22%), Gaps = 44/268 (16%)
Query: 454 SFIRALHDTTALEDEKVEFTVQVE---GIPTPKVSWYKDGFE------IFSSRRQRIVTD 504
S I + ++E V T + W + G I S
Sbjct: 2 SPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYA 61
Query: 505 NDIS----------TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQY 554
+ + I Q + D G KC + L + P + +
Sbjct: 62 GRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKV 121
Query: 555 EDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPL------------TSGGRYEITHTD- 601
L I + + G GR +
Sbjct: 122 YTVDLGRT-VTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGT 180
Query: 602 --RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVT 659
++ I+ R +D G+Y + + + + V + SVT
Sbjct: 181 GQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL----RGSVT 236
Query: 660 LSWSEPEDDGGCKIGNYIVEYFRPPGPP 687
+ ++ N R
Sbjct: 237 FHCALGP-----EVANVAKFLCRQSSGE 259
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 72.2 bits (177), Expect = 3e-15
Identities = 25/103 (24%), Positives = 35/103 (33%), Gaps = 8/103 (7%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDND---- 506
P I + AL EK + + P P +++W + S R +
Sbjct: 13 GPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72
Query: 507 --ISTLIIHQAALMDEGEI-KCTATNRAGHSITKARLRLEAPP 546
ISTL I D I CTA N G RL+ +
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
Score = 64.1 bits (156), Expect = 2e-12
Identities = 30/122 (24%), Positives = 40/122 (32%), Gaps = 12/122 (9%)
Query: 532 GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA-RWLHNGEPLT 590
G S + L + PP I + GE ++K + PPP W L
Sbjct: 1 GSSGSSGTLTVNGPPIISSTQTQH----ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLE 56
Query: 591 SG--GRYEITHTDRYLN----LRISDARRADRG-EYQAHGVNSLGEDVASFLVTVTDRPL 643
SG GRY + L IS+ RAD Y NS G D + +
Sbjct: 57 SGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116
Query: 644 PP 645
Sbjct: 117 SG 118
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 72.1 bits (177), Expect = 3e-15
Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 10/110 (9%)
Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
PGP G + + W+ P G + GY +
Sbjct: 18 PGPVGHLSFSEILDT----SLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNV 72
Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
E V+GL Y + A G G +S P + PS
Sbjct: 73 TLEYRVTGLTALTTYTIEVAAMTSKG---QGQVSAS--TISSGVPPSGPS 117
Score = 72.1 bits (177), Expect = 3e-15
Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 10/110 (9%)
Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
PGP G + + W+ P G + GY +
Sbjct: 18 PGPVGHLSFSEILDT----SLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNV 72
Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
E V+GL Y + A G G +S P + PS
Sbjct: 73 TLEYRVTGLTALTTYTIEVAAMTSKG---QGQVSAS--TISSGVPPSGPS 117
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 72.0 bits (177), Expect = 3e-15
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P + + ++ W+ PE G +L Y +++ S
Sbjct: 10 APSQVVVIRQERAGQT----SVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQ-SYSTLKA 63
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
T VSGL+PG RY F++ A G G S+ + V + + PS
Sbjct: 64 VTTRATVSGLKPGTRYVFQVRARTSAG---CGRFSQAMEV--ETGKPSGPS 109
Score = 72.0 bits (177), Expect = 3e-15
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P + + ++ W+ PE G +L Y +++ S
Sbjct: 10 APSQVVVIRQERAGQT----SVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQ-SYSTLKA 63
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
T VSGL+PG RY F++ A G G S+ + V + + PS
Sbjct: 64 VTTRATVSGLKPGTRYVFQVRARTSAG---CGRFSQAMEV--ETGKPSGPS 109
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 74.1 bits (182), Expect = 3e-15
Identities = 22/194 (11%), Positives = 53/194 (27%), Gaps = 32/194 (16%)
Query: 461 DTTALEDEKVEFTVQ--VEGIPTPKVSWYK-----------DGFEIFSSRRQRIVTDNDI 507
+T + + + + W K E F + + N
Sbjct: 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN-- 65
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
TL I D+ K + + G ++ + L+ + PK +
Sbjct: 66 GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK------ISWTCINTT 119
Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
L + P +G+ L R + + +++ N +
Sbjct: 120 LTCEVMNGTDPELNLYQDGKHLKLSQR-----------VITHKWTTSLSAKFKCTAGNKV 168
Query: 628 GEDVASFLVTVTDR 641
++ + V+ ++
Sbjct: 169 SKESSVEPVSCPEK 182
Score = 51.4 bits (123), Expect = 2e-07
Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 36/197 (18%)
Query: 349 GKPQLLP-DSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTE 407
G+ L S + D+ I+WE + R+ + + + + ++
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWE---KTSDKKKIAQF---RKEKETFKEKDTYKLFKNGT 67
Query: 408 LMVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTA 464
L + L+ ++++ + G + L + + Q + P +
Sbjct: 68 LKIKHLKTDDQDI---YKVSIYDTKGKNV---LEKIFDLKIQE-RVSKPK--------IS 112
Query: 465 LEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIK 524
T +V P+++ Y+DG + S+R +I H+ + K
Sbjct: 113 WTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQR-----------VITHKWTTSLSAKFK 161
Query: 525 CTATNRAGHSITKARLR 541
CTA N+ + +
Sbjct: 162 CTAGNKVSKESSVEPVS 178
Score = 48.3 bits (115), Expect = 2e-06
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 15/99 (15%)
Query: 574 GMPPPTARWLHNGEPLT----SGGRYEITHTDRYL-----NLRISDARRADRGEYQAHGV 624
+W + + D Y L+I + D+ Y+
Sbjct: 27 SDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIY 86
Query: 625 NSLGEDVAS--FLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
++ G++V F + + +R P + + TL+
Sbjct: 87 DTKGKNVLEKIFDLKIQERVSKP----KISWTCINTTLT 121
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 71.0 bits (174), Expect = 5e-15
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P K +++ +P+ I W+ P S V Y + + TG V+
Sbjct: 4 VSSVPTKLEVVAATPT----SLLISWDAPM--SSSSVYYYRITYGETGGNSPVQEFTVPY 57
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
+ +SGL PG Y + A P+++ Y
Sbjct: 58 SSSTATISGLSPGVDYTITVYAWGEDSAGYMFM-YSPISINY 98
Score = 71.0 bits (174), Expect = 5e-15
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P K +++ +P+ I W+ P S V Y + + TG V+
Sbjct: 4 VSSVPTKLEVVAATPT----SLLISWDAPM--SSSSVYYYRITYGETGGNSPVQEFTVPY 57
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
+ +SGL PG Y + A P+++ Y
Sbjct: 58 SSSTATISGLSPGVDYTITVYAWGEDSAGYMFM-YSPISINY 98
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 71.9 bits (176), Expect = 5e-15
Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 9/107 (8%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDND------ 506
LH + + F+V +G P P + W +G + +
Sbjct: 3 MPASVQLHTAVEMHHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 507 -ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPK 552
L ++Q ++ G A N G + P P+
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107
Score = 67.3 bits (164), Expect = 2e-13
Identities = 26/130 (20%), Positives = 35/130 (26%), Gaps = 16/130 (12%)
Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEI------- 597
P + I V G P P+ RWL NG L
Sbjct: 3 MPASVQLHTAVEMHH----WCIPFSVD--GQPAPSLRWLFNGSVLNETSFIFTEFLEPAA 56
Query: 598 THTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPL---PPGKAKVVMTL 654
T R+ LR++ + G Y N G+ AS + D P P +
Sbjct: 57 NETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNST 116
Query: 655 GKSVTLSWSE 664
E
Sbjct: 117 SGDPVEKKDE 126
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 72.6 bits (178), Expect = 9e-15
Identities = 32/181 (17%), Positives = 56/181 (30%), Gaps = 27/181 (14%)
Query: 462 TTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
+ LE + V Q P W+ + I S + I A + D
Sbjct: 17 YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS----------SYFIDAATVNDS 66
Query: 521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPPT 579
GE +C + S +L + + ++ F+ + I L+ S
Sbjct: 67 GEYRCQTNL-STLSDP-VQLEVHIGWLLLQAPRWV----FKEEDPIHLRCHSWKNTALHK 120
Query: 580 ARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFLVTV 638
+L NG+ H + + I A D G Y G+ + +T+
Sbjct: 121 VTYLQNGKDRKY------FHHNS--DFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
Query: 639 T 639
T
Sbjct: 173 T 173
Score = 48.7 bits (116), Expect = 1e-06
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 14/100 (14%)
Query: 435 GPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV-EGIPTPKVSWYKDGFEI 493
LS+P+ + + E++ + + KV++ ++G +
Sbjct: 76 STLSDPVQLEVHIGWL-----LLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR 130
Query: 494 FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH 533
+ S I +A L D G C + +
Sbjct: 131 KYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKN 162
Score = 46.8 bits (111), Expect = 7e-06
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 16/107 (14%)
Query: 563 GEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
+ + LK A P + +W HN ++S + I A D GEY+
Sbjct: 22 KDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS----------SYFIDAATVNDSGEYRC 71
Query: 622 HGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTL---SWSEP 665
S D + V L + V + L SW
Sbjct: 72 QTNLSTLSD--PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNT 116
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 69.8 bits (171), Expect = 1e-14
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P K +++ +P+ I W+ V Y + + TG V+
Sbjct: 7 VSSVPTKLEVVDATPT----SLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPG 61
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
+ +SGL+PG Y + A + + P+++ Y
Sbjct: 62 YYSTATISGLKPGVDYTITVYAYDTFFPG--YEPNSPISINY 101
Score = 69.8 bits (171), Expect = 1e-14
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P K +++ +P+ I W+ V Y + + TG V+
Sbjct: 7 VSSVPTKLEVVDATPT----SLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPG 61
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
+ +SGL+PG Y + A + + P+++ Y
Sbjct: 62 YYSTATISGLKPGVDYTITVYAYDTFFPG--YEPNSPISINY 101
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 70.1 bits (172), Expect = 1e-14
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 14/110 (12%)
Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
PG P + P+S + + W PP + Y + ++ R +
Sbjct: 18 PGQPLNFKAEPESET----SILLSWTPPR---SDTIANYELVYKDGEHGEEQRITIE--P 68
Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
T + GL+P Y FR+ A + G G + ++ ++ PS
Sbjct: 69 GTSYRLQGLKPNSLYYFRLAARSPQG---LGASTAEISAR--TMQSSGPS 113
Score = 70.1 bits (172), Expect = 1e-14
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 14/110 (12%)
Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
PG P + P+S + + W PP + Y + ++ R +
Sbjct: 18 PGQPLNFKAEPESET----SILLSWTPPR---SDTIANYELVYKDGEHGEEQRITIE--P 68
Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
T + GL+P Y FR+ A + G G + ++ ++ PS
Sbjct: 69 GTSYRLQGLKPNSLYYFRLAARSPQG---LGASTAEISAR--TMQSSGPS 113
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 69.8 bits (171), Expect = 1e-14
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 11/114 (9%)
Query: 682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPH 740
P P + + ++W + +P+ G+ + +R T S
Sbjct: 7 GPVAGPYITFTDAVNET----TIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62
Query: 741 MVE--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 791
MVE +S L+P Y ++ N G S + T RS ++
Sbjct: 63 MVEGDRYWHSISHLQPETSYDIKMQCFNEGG---ESEFSNVMICETKARSGPSS 113
Score = 69.8 bits (171), Expect = 2e-14
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 11/113 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
P P + + ++W + +P+ G+ + +R T S M
Sbjct: 8 PVAGPYITFTDAVNET----TIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDM 63
Query: 403 VE--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 452
VE +S L+P Y ++ N G S + T RS ++
Sbjct: 64 VEGDRYWHSISHLQPETSYDIKMQCFNEGG---ESEFSNVMICETKARSGPSS 113
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 69.4 bits (170), Expect = 2e-14
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 10/110 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P + + T+ W PE G +L Y + + + +S
Sbjct: 7 GPSTVPIMHQVSATMR----SITLSWPQPEQPNG-IILDYEIRYYEKEHNEFN-SSMARS 60
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 452
+ + GL PG Y ++ A V G G S + T S ++
Sbjct: 61 QTNTARIDGLRPGMVYVVQVRARTVAG---YGKFSGKMCFQTLTDSGPSS 107
Score = 69.4 bits (170), Expect = 2e-14
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 10/110 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P + + T+ W PE G +L Y + + + +S
Sbjct: 7 GPSTVPIMHQVSATMR----SITLSWPQPEQPNG-IILDYEIRYYEKEHNEFN-SSMARS 60
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 791
+ + GL PG Y ++ A V G G S + T S ++
Sbjct: 61 QTNTARIDGLRPGMVYVVQVRARTVAG---YGKFSGKMCFQTLTDSGPSS 107
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 76.0 bits (186), Expect = 2e-14
Identities = 55/466 (11%), Positives = 111/466 (23%), Gaps = 86/466 (18%)
Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWE--PPEYDGGSPVLGYLVEHRRTGSPYWVR 397
+ P P++L S ++W + S V + ++ R S V+
Sbjct: 77 NEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNV-IWEIKVLRKESMELVK 135
Query: 398 ASPHMVEDTELMVSGLE--------PGWRYQFRITAE-NVVGFSEPGPLSEPLTVTYQRS 448
H + I + + FS S+ ++
Sbjct: 136 LVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDW--SPVKQI 193
Query: 449 PAAAPSFIRAL-HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDI 507
S + D L + F + + + + I + +I
Sbjct: 194 SWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNI 253
Query: 508 STLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIK 567
S +I + PP +
Sbjct: 254 S----------VSASSGTNVVFTTEDNIFGTVIFAGYPP----------------DTPQQ 287
Query: 568 LKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSL 627
L + W + G G ++T L S + + R +
Sbjct: 288 LNCETHDLKEIICSW-NPGRVTALVGPRATSYT-----LVESFSGKYVRLKRA------- 334
Query: 628 GEDVASFLVTVTDRPLPPGKA-----KVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFR 682
E + + + LP + LG+S + +
Sbjct: 335 -EAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKV------------- 380
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW---VRASP 739
P P ++ + + + W P + +E +++ S V
Sbjct: 381 YPHTPTSFKVKDINST----AVKLSWHLPG-NFAKINFLCEIEIKKSNSVQEQRNVTIQG 435
Query: 740 HMVEDTELMVSGLEPGWRYQFRI--TAENVVGFSEPGPLSEPLTVT 783
+ + L P Y FRI + E +S+ S
Sbjct: 436 VENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKW---SNKKQHL 478
Score = 68.3 bits (166), Expect = 6e-12
Identities = 53/449 (11%), Positives = 103/449 (22%), Gaps = 94/449 (20%)
Query: 369 WEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENV 428
W+ P G +E R + +E T + + L G Y+ I + +
Sbjct: 16 WKAPSGTGRGTDYEVCIEQRSRSC--------YQLEKTSIKIPALSHG-DYEITINSLHD 66
Query: 429 VGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYK 488
G S V+ P L + + G P S
Sbjct: 67 FGSSTSKFTLNEQNVSL------IPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVI 120
Query: 489 DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI----TKARLRLEA 544
++ +V T + + L A H + L
Sbjct: 121 WEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSG 180
Query: 545 PPTI--------------RLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
K + + +G I N +
Sbjct: 181 LEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIH 240
Query: 591 SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKV 650
G + N+ +S + V + +++ ++ P P +
Sbjct: 241 LDGE---NVAIKIRNISVSA-------SSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNC 290
Query: 651 VMTLGKSVTLSWSEPEDDG--GCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRW 708
K + SW+ G + +Y + G + + +
Sbjct: 291 ETHDLKEIICSWNPGRVTALVGPRATSYTLVE-SFSGKYVRLKRAEAPTN---------- 339
Query: 709 EPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVV 768
E +L+ L Y F + A N +
Sbjct: 340 ----------------------------------ESYQLLFQMLPNQEIYNFTLNAHNPL 365
Query: 769 GFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
G S+ S L ++ P+ +
Sbjct: 366 GRSQ----STILVNITEKVYPHTPTSFKV 390
Score = 56.4 bits (135), Expect = 3e-08
Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 8/131 (6%)
Query: 331 LNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GSPVLGYLVEHR 388
+++ + PP PQ L + D W P G Y +
Sbjct: 265 FTTEDNIFGTVIFAGYPPDTPQQLNCE-THDLKEIICSWNPGRVTALVGPRATSYTLVES 323
Query: 389 RTGSPYWV-RASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR 447
+G + RA E +L+ L Y F + A N +G S+ S L ++
Sbjct: 324 FSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQ----STILVNITEK 379
Query: 448 SPAAAPSFIRA 458
P+ +
Sbjct: 380 VYPHTPTSFKV 390
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 69.8 bits (170), Expect = 3e-14
Identities = 30/139 (21%), Positives = 44/139 (31%), Gaps = 34/139 (24%)
Query: 533 HSITKARLRLEAPPTIRL--PKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT 590
H +R + PP I L P + D ++ G ++L V ++G P PT W
Sbjct: 4 HHHHSSR---QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGN 60
Query: 591 S-----------------------------GGRYEITHTDRYLNLRISDARRADRGEYQA 621
GR + T + A + D G Y
Sbjct: 61 KAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTV 120
Query: 622 HGVNSLGEDVASFLVTVTD 640
N +GED + V V D
Sbjct: 121 TVKNPVGEDQVNLTVKVID 139
Score = 59.8 bits (144), Expect = 1e-10
Identities = 21/118 (17%), Positives = 29/118 (24%), Gaps = 29/118 (24%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG---------------------- 490
R + K+ V + G P P V W K
Sbjct: 19 DCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSD 78
Query: 491 -------FEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
+ R R+ T D S + A DEG T N G ++
Sbjct: 79 EWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 71.3 bits (174), Expect = 4e-14
Identities = 33/195 (16%), Positives = 57/195 (29%), Gaps = 17/195 (8%)
Query: 462 TTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEG 521
A + V T G +P SW I S ++ + STL ++ + +E
Sbjct: 11 YLAQIGDSVSLTCSTTGCESPFFSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGNEH 67
Query: 522 EIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP---P 578
CTAT + ++ + + P E G+ I +K S+A + P
Sbjct: 68 SYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGP---LEAGKPITVKCSVADVYPFDRL 124
Query: 579 TARWLHNGEPLTSGGRYEITHTDRY----LNLRISDARRADRGEYQAHGVNSLGEDVASF 634
L + S E L + + + E +
Sbjct: 125 EIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVP 184
Query: 635 LVTVTDRPL----PP 645
V + L P
Sbjct: 185 TVRQAVKELQVYISP 199
Score = 54.8 bits (131), Expect = 2e-08
Identities = 29/190 (15%), Positives = 55/190 (28%), Gaps = 19/190 (10%)
Query: 555 EDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRA 614
E L ++G+ + L S G P W + +G ++T+ L ++
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFG 64
Query: 615 DRGEYQAHGVNSLGEDVASFLVTVTDRPLPP-GKAKVVMTLGKSVTLSWSEPEDDGGCKI 673
+ Y + V + P P + GK +T+ C +
Sbjct: 65 NEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVK---------CSV 115
Query: 674 GNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY 733
+ P + LL + F + + S + + G
Sbjct: 116 ADV------YPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVL 169
Query: 734 WVRASPHMVE 743
RA H+ E
Sbjct: 170 VCRAKLHIDE 179
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 71.2 bits (174), Expect = 7e-14
Identities = 27/120 (22%), Positives = 42/120 (35%), Gaps = 6/120 (5%)
Query: 678 VEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRA 737
Y P PP ++ + + W P +L Y +++R + W +
Sbjct: 98 PVYKVKPNPPHNLSVINSEEL--SSILKLTWTNPS-IKSVIILKYNIQYRTKDASTWSQI 154
Query: 738 SPHMVED--TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSF 794
P + V L+P Y FRI G SE + TY+ P+ PSF
Sbjct: 155 PPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPSF 214
Score = 70.8 bits (173), Expect = 1e-13
Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 6/115 (5%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P PP ++ + + W P +L Y +++R + W + P
Sbjct: 103 KPNPPHNLSVINSEEL--SSILKLTWTNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDT 159
Query: 404 ED--TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSF 455
+ V L+P Y FRI G SE + TY+ P+ PSF
Sbjct: 160 ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEPSF 214
Score = 43.8 bits (103), Expect = 1e-04
Identities = 13/111 (11%), Positives = 31/111 (27%), Gaps = 3/111 (2%)
Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
PP KP+ L + W+ + + ++ + + +
Sbjct: 7 PPEKPKNL-SCIVNEGKKMRCEWDGGR-ETHLET-NFTLKSEWATHKFADCKAKRDTPTS 63
Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR 457
+ + + AEN +G ++ + +P S I
Sbjct: 64 CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVIN 114
Score = 43.8 bits (103), Expect = 1e-04
Identities = 13/111 (11%), Positives = 31/111 (27%), Gaps = 3/111 (2%)
Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
PP KP+ L + W+ + + ++ + + +
Sbjct: 7 PPEKPKNL-SCIVNEGKKMRCEWDGGR-ETHLET-NFTLKSEWATHKFADCKAKRDTPTS 63
Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR 796
+ + + AEN +G ++ + +P S I
Sbjct: 64 CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVIN 114
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 70.7 bits (173), Expect = 8e-14
Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 33/190 (17%)
Query: 462 TTALEDEKVEFTVQVEGIPTP-KVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
LE + V Q P W+ + I S + I A + D
Sbjct: 17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS----------SYFIDAATVDDS 66
Query: 521 GEIKCTATNRAGHSITKARLRLE---APPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMP 576
GE +C + S ++LE ++ P+ F+ + I L+ S
Sbjct: 67 GEYRC----QTQLSTLSDPVQLEVHIGWLLLQAPRWV-----FKEEDPIHLRCHSWKNTA 117
Query: 577 PPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFL 635
+L NG+ H + + I A D G Y G+ +
Sbjct: 118 LHKVTYLQNGKGRKY------FHHNS--DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQ 169
Query: 636 VTVTDRPLPP 645
+T+T
Sbjct: 170 ITITQGLAVS 179
Score = 46.0 bits (109), Expect = 2e-05
Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 18/102 (17%)
Query: 435 GPLSEP--LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP-KVSWYKDGF 491
LS+P L V + E++ + KV++ ++G
Sbjct: 76 STLSDPVQLEVHI-------GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGK 128
Query: 492 EIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH 533
S I +A L D G C + +
Sbjct: 129 GRKYFHHN--------SDFYIPKATLKDSGSYFCRGLVGSKN 162
Score = 44.5 bits (105), Expect = 6e-05
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 16/107 (14%)
Query: 563 GEIIKLKVSMAGMPPPTA-RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQA 621
+ + LK A P + +W HN ++S + I A D GEY+
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS----------SYFIDAATVDDSGEYRC 71
Query: 622 HGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTL---SWSEP 665
S D + V L + V + L SW
Sbjct: 72 QTQLSTLSD--PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNT 116
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 69.6 bits (170), Expect = 1e-13
Identities = 22/186 (11%), Positives = 46/186 (24%), Gaps = 26/186 (13%)
Query: 464 ALEDEKVEFTVQV--EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS-------TLIIHQ 514
+ + +V W + + +R+ + L I
Sbjct: 8 GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKN 67
Query: 515 AALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG 574
D G T + G I L L + P Y + L +
Sbjct: 68 LTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWEC------SNATLTCEVLE 121
Query: 575 MPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF 634
+ E L S + +++ R ++ VN + ++
Sbjct: 122 GTDVELKLYQGKEHLRSLRQKTMSYQW-----------TNLRAPFKCKAVNRVSQESEME 170
Query: 635 LVTVTD 640
+V +
Sbjct: 171 VVNCPE 176
Score = 44.2 bits (104), Expect = 5e-05
Identities = 29/203 (14%), Positives = 59/203 (29%), Gaps = 45/203 (22%)
Query: 353 LLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSG 412
L + + D+ +RW G + V E +R P+ + ++ + +L +
Sbjct: 16 LNIPNFQMTDDIDEVRW----ERGSTLV----AEFKRKMKPFLKSGAFEILANGDLKIKN 67
Query: 413 LEP---GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEK 469
L G + +T + G L++ L + + P + T
Sbjct: 68 LTRDDSGT---YNVTVYSTNGTRI---LNKALDLRIL-EMVSKPMIYWECSNAT------ 114
Query: 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529
T +V ++ Y+ + S R+ + KC A N
Sbjct: 115 --LTCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVN 161
Query: 530 RAGHSITKARLRLEAPPTIRLPK 552
R + P+
Sbjct: 162 RVSQESEM--------EVVNCPE 176
Score = 43.4 bits (102), Expect = 9e-05
Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 11/109 (10%)
Query: 562 MGEIIKLKVSMAGMPPPTA--RWLHNGEPLTS--GGRYEITHTDRYL-----NLRISDAR 612
+G I L + M RW + + + +L+I +
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 613 RADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
R D G Y ++ G + + + + K + + TL+
Sbjct: 70 RDDSGTYNVTVYSTNGTRILNKALDLRILE-MVSKPMIYWE-CSNATLT 116
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 74.7 bits (184), Expect = 1e-13
Identities = 23/270 (8%), Positives = 75/270 (27%), Gaps = 30/270 (11%)
Query: 5 RSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLA 64
R+ L + ++ E +Q + + K+ ++
Sbjct: 754 RASEQTKSDYLKRANELVQWIND-KQASLESRDFGDSIESVQSFMNAH-KEYKKTEKPPK 811
Query: 65 MKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMK 124
+ +++ Y Q + + + + ++ A++ + +
Sbjct: 812 GQ-EVSELEAIYN----SLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEK--AEQEHAE 864
Query: 125 RDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYL 184
R K+ V +Q+ R + K+ ++ K + +
Sbjct: 865 ALRIELKRQKKIAVLLQKYNR----ILKKLENWATTKSVYLGSNE----------TGDSI 910
Query: 185 HELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQA 244
++A ++ ++ Q + A +T + + + +A+
Sbjct: 911 TAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTG 970
Query: 245 RRFRFKLNLRKYERVIELLKLKREQERQEK 274
+ E L + E+ ++ +
Sbjct: 971 ------VKSSA-ETYKNTLLAELERLQKIE 993
Score = 67.4 bits (165), Expect = 2e-11
Identities = 30/253 (11%), Positives = 79/253 (31%), Gaps = 22/253 (8%)
Query: 31 DEREFCMIRSKTIV-IQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQY 89
+ER +S + + + ++ E S +Q + + ++
Sbjct: 752 EERASEQTKSDYLKRANELVQWIN-DKQASLESRDFGDSIESVQSFMN----AHKEYKKT 806
Query: 90 LALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLT 149
+ ++ L K + + E+ ++++ + +
Sbjct: 807 EKPPKGQEVSE--LEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHA- 863
Query: 150 MRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRE 209
R K+ A ++Q++ R K + A K+ + + A++ + +
Sbjct: 864 -EALRIELKRQKKIAVLLQKYNRILKKLENWA----TTKSVYLGSNETGDSITAVQAKLK 918
Query: 210 RYVALRTATITIQTRFRAYLIAKNQRDEYA------ELKQARRFRFKLNLRKYERVIELL 263
A +++ + + L++ + EL + + F + E
Sbjct: 919 NLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETY 978
Query: 264 K--LKREQERQEK 274
K L E ER +K
Sbjct: 979 KNTLLAELERLQK 991
Score = 55.4 bits (134), Expect = 1e-07
Identities = 14/194 (7%), Positives = 55/194 (28%), Gaps = 13/194 (6%)
Query: 1 MQQCRSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQ 60
+Q + + +Q+ + ++ E+ ++ + + +
Sbjct: 776 DKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEV--SELEAIYNSL----QTKL 829
Query: 61 EYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAK 120
+ + + A + A + R E + K + +Q +
Sbjct: 830 RLIKREPFVAPAGLTPNEIDSTWSALE--KAEQEHAEALRIELKRQKKIAVLLQKYNR-- 885
Query: 121 LLMKRDRAAYTELKQACVSVQQRWRANLTMRKQ-RAHFLLMKQKASVIQQWYRNTKLMRL 179
+ + + K + + + ++ + + + S+ Q + +
Sbjct: 886 --ILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILA 943
Query: 180 EASYLHELKAATIT 193
+ + L+ +T
Sbjct: 944 QLTELNYNGVPELT 957
Score = 44.7 bits (106), Expect = 2e-04
Identities = 12/144 (8%), Positives = 34/144 (23%), Gaps = 46/144 (31%)
Query: 172 RNTKLMRLEASYLHELKAATITIQ-----RRYRANVAMRTQRERYVALRTATITIQTRFR 226
R L +LE E + + + + + ++Q+
Sbjct: 743 RAGVLAQLEEERASEQTKSDYLKRANELVQWIND----KQASLESRDFGDSIESVQSFMN 798
Query: 227 AYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQSL 286
A+ E K+ + + Q +++++
Sbjct: 799 AHK----------EYKKTEKPP---------------------------KGQEVSELEAI 821
Query: 287 WKMYRVRKKFADIIEQKKQAKKTA 310
+ + + + A T
Sbjct: 822 YNSLQTKLRLIKREPFVAPAGLTP 845
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 66.6 bits (163), Expect = 1e-13
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
+ W+PP P+ G LV R P T L ++ LEP Y+ RI
Sbjct: 18 AVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIV 73
Query: 425 AENVVGFSEP 434
A N +S P
Sbjct: 74 ARNGQQYSPP 83
Score = 66.6 bits (163), Expect = 1e-13
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
+ W+PP P+ G LV R P T L ++ LEP Y+ RI
Sbjct: 18 AVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIV 73
Query: 764 AENVVGFSEP 773
A N +S P
Sbjct: 74 ARNGQQYSPP 83
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 66.4 bits (162), Expect = 2e-13
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 15/113 (13%)
Query: 344 PPGPPGKP-QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
G +L+ P + W L Y + + M
Sbjct: 8 AESLSGLSLKLVKKEPR----QLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQ-----M 58
Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 455
V + ++++ L+P Y R+ +G PGP S ++ SP + PS
Sbjct: 59 VLEPRVLLTKLQPDTTYIVRVRTLTPLG---PGPFSPD--HEFRTSPPSGPSS 106
Score = 66.4 bits (162), Expect = 2e-13
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 15/113 (13%)
Query: 683 PPGPPGKP-QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
G +L+ P + W L Y + + M
Sbjct: 8 AESLSGLSLKLVKKEPR----QLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQ-----M 58
Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 794
V + ++++ L+P Y R+ +G PGP S ++ SP + PS
Sbjct: 59 VLEPRVLLTKLQPDTTYIVRVRTLTPLG---PGPFSPD--HEFRTSPPSGPSS 106
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 65.9 bits (161), Expect = 3e-13
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
PP L ++P D + W PP VL Y + + ++
Sbjct: 7 GRSPPSNLALASETP----DSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPG 58
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ + + L+ +Y+ ++A G SE ++ T Q + + PS
Sbjct: 59 ARSHVTLPDLQAATKYRVLVSAIYAAGR------SEAVSATGQTACPSGPS 103
Score = 65.9 bits (161), Expect = 3e-13
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 14/111 (12%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
PP L ++P D + W PP VL Y + + ++
Sbjct: 7 GRSPPSNLALASETP----DSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPG 58
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ + + L+ +Y+ ++A G SE ++ T Q + + PS
Sbjct: 59 ARSHVTLPDLQAATKYRVLVSAIYAAGR------SEAVSATGQTACPSGPS 103
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 69.6 bits (169), Expect = 4e-13
Identities = 29/239 (12%), Positives = 45/239 (18%), Gaps = 61/239 (25%)
Query: 460 HDTTALEDEKVEFT---VQVEGIPTPKVSWYKDGFEIFSSRRQRI--------------- 501
+ VE P +SW K S++ +
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 502 --------------VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKA-------RL 540
V + TL + D G C + + ++
Sbjct: 70 SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129
Query: 541 RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT 600
P E + E G I + W +
Sbjct: 130 TGHTPSNNVHVSTAEVVQVDE-GNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188
Query: 601 DRYL---------------------NLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
NL I A+ D G GE A T+
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 67.2 bits (163), Expect = 2e-12
Identities = 35/239 (14%), Positives = 63/239 (26%), Gaps = 30/239 (12%)
Query: 326 EAITGLNVGTDLYCVIKKPPGPPGKPQ---LLPDSPSLDRDVFTIRWEPPEYDGGSPVLG 382
E G V +L C + P L SP VF + + G
Sbjct: 13 EVHAGGTV--ELPCSYQLANDTQ-PPVISWLKGASPDRSTKVFKGNYN---WQGEGLGFV 66
Query: 383 YLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT 442
++ + + RAS + L ++ + P ++ +E G ++ +
Sbjct: 67 ESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVV 126
Query: 443 VTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKD------------- 489
+ + + E + T V+WY
Sbjct: 127 LKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQ 186
Query: 490 --------GFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
G FSS + + L+I A + D G + C G
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 65.1 bits (159), Expect = 5e-13
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWE-PPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
P P S + ++W P + +P+ G+ + +R T S +
Sbjct: 4 PITGPHIAYTEAVSDT----QIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDV 59
Query: 403 VE--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
VE M+ L+P Y ++ N G S +
Sbjct: 60 VEGSKQWHMIGHLQPETSYDIKMQCFNEGG---ESEFSNVMICE 100
Score = 65.1 bits (159), Expect = 5e-13
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWE-PPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
P P S + ++W P + +P+ G+ + +R T S +
Sbjct: 4 PITGPHIAYTEAVSDT----QIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDV 59
Query: 742 VE--DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
VE M+ L+P Y ++ N G S +
Sbjct: 60 VEGSKQWHMIGHLQPETSYDIKMQCFNEGG---ESEFSNVMICE 100
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 69.9 bits (170), Expect = 6e-13
Identities = 30/266 (11%), Positives = 59/266 (22%), Gaps = 60/266 (22%)
Query: 574 GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS 633
+ W N + I T + + + L ++V
Sbjct: 37 HVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNI-QLTCNILTFGQLEQNVYG 95
Query: 634 FLVTVTDRPLPPGKAKVVMTLGKSVTLS-----------------------WSEPEDDGG 670
+ P P ++ GK + +++ +
Sbjct: 96 ITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRD 155
Query: 671 CKIGNYI-------VEY-FR-----------------------PPGPPGKPQLLPDSPSL 699
+ V P PP ++
Sbjct: 156 TPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEEL- 214
Query: 700 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--VRASPHMVEDTELMVSGLEPGWR 757
+ + W P +L Y +++R + W + + V L+P
Sbjct: 215 -SSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTE 272
Query: 758 YQFRITAENVVGFSEPGPLSEPLTVT 783
Y FRI G SE +
Sbjct: 273 YVFRIRCMKEDGKGYWSDWSEEASGI 298
Score = 66.4 bits (161), Expect = 9e-12
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--VRASPH 401
P PP ++ + + W P +L Y +++R + W +
Sbjct: 199 KPNPPHNLSVINSEEL--SSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDT 255
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
+ V L+P Y FRI G SE +
Sbjct: 256 ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI 298
Score = 39.0 bits (90), Expect = 0.006
Identities = 12/127 (9%), Positives = 34/127 (26%), Gaps = 6/127 (4%)
Query: 332 NVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG 391
+ ++Y + PP KP+ L + W+ + + ++
Sbjct: 88 QLEQNVYGITIISGLPPEKPKNL-SCIVNEGKKMRCEWDGGR-ETHLET-NFTLKSEWAT 144
Query: 392 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA 451
+ + + + + + AEN +G ++ +
Sbjct: 145 HKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN---FDPVYKVKPN 201
Query: 452 APSFIRA 458
P +
Sbjct: 202 PPHNLSV 208
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 67.5 bits (165), Expect = 7e-13
Identities = 28/184 (15%), Positives = 45/184 (24%), Gaps = 55/184 (29%)
Query: 636 VTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQL--- 692
+ P +V +++L W P Y + Y P G + ++
Sbjct: 1 INAGTDLDNPKDLEVSDPTETTLSLRWRRPVAK----FDRYRLTYVSPSGKKNEMEIPVD 56
Query: 693 -------------------------------------LPDSP------SLDRDVFTIRWE 709
+ SP + + T+ W
Sbjct: 57 STSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWT 116
Query: 710 PPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVG 769
PP S V Y V + + T + L PG Y I +
Sbjct: 117 PPR----SRVDSYRVSYVPITGGTPNVVTVD-GSKTRTKLVKLVPGVDYNVNIISVKGFE 171
Query: 770 FSEP 773
SEP
Sbjct: 172 ESEP 175
Score = 61.7 bits (150), Expect = 5e-11
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 17/115 (14%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P ++ + + ++RW P + Y + + P V
Sbjct: 6 DLDNPKDLEVSDPTET----TLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIP--V 55
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
+ T ++ GL+ G Y + AE S+P T + +P I
Sbjct: 56 DSTSFILRGLDAGTEYTISLVAEKGRHKSKP-------TTIKGSTVVGSPKGISF 103
Score = 61.7 bits (150), Expect = 5e-11
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 17/115 (14%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P ++ + + ++RW P + Y + + P V
Sbjct: 6 DLDNPKDLEVSDPTET----TLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIP--V 55
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
+ T ++ GL+ G Y + AE S+P T + +P I
Sbjct: 56 DSTSFILRGLDAGTEYTISLVAEKGRHKSKP-------TTIKGSTVVGSPKGISF 103
Score = 59.0 bits (143), Expect = 5e-10
Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 17/119 (14%)
Query: 328 ITGLNVGTD----LYCVIKKPPGPP--GKPQLLPDSP------SLDRDVFTIRWEPPEYD 375
+ GL+ GT+ L + P K + SP + + T+ W PP
Sbjct: 62 LRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPPR-- 119
Query: 376 GGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
S V Y V + + T + L PG Y I + SEP
Sbjct: 120 --SRVDSYRVSYVPITGGTPNVVTVD-GSKTRTKLVKLVPGVDYNVNIISVKGFEESEP 175
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 67.9 bits (166), Expect = 7e-13
Identities = 25/204 (12%), Positives = 44/204 (21%), Gaps = 65/204 (31%)
Query: 625 NSLGEDVASFLVTVTDRPL---PPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY- 680
+S S + + P V S+ L W+ I Y +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPLNSS---TIIGYRITVV 59
Query: 681 --------------------------------FR-------------------PPGPPGK 689
PP
Sbjct: 60 AAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTD 119
Query: 690 PQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMV 749
+ P + W PP + +LV + + V D +++
Sbjct: 120 LRFTNIGPD----TMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVL 172
Query: 750 SGLEPGWRYQFRITAENVVGFSEP 773
+ L PG Y +++ S P
Sbjct: 173 TNLLPGTEYVVSVSSVYEQHESTP 196
Score = 65.6 bits (160), Expect = 3e-12
Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 14/120 (11%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P + + S +RW P S ++GY + G +
Sbjct: 22 EVPQPTDLSFVDITDS----SIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDS 74
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 463
V+GLEPG Y + G S P T Q++ P+ +R +
Sbjct: 75 SVGYYTVTGLEPGIDYDISVYTVKNGGESTP-------TTLTQQTAVPPPTDLRFTNIGP 127
Score = 65.6 bits (160), Expect = 3e-12
Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 14/120 (11%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P + + S +RW P S ++GY + G +
Sbjct: 22 EVPQPTDLSFVDITDS----SIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDS 74
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
V+GLEPG Y + G S P T Q++ P+ +R +
Sbjct: 75 SVGYYTVTGLEPGIDYDISVYTVKNGGESTP-------TTLTQQTAVPPPTDLRFTNIGP 127
Score = 62.9 bits (153), Expect = 3e-11
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 7/91 (7%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
PP + P + W PP + +LV + + V
Sbjct: 113 AVPPPTDLRFTNIGPD----TMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISP 165
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
D ++++ L PG Y +++ S P
Sbjct: 166 SDNAVVLTNLLPGTEYVVSVSSVYEQHESTP 196
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 64.2 bits (157), Expect = 1e-12
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 13/103 (12%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GSPVLGYLVEHRRTGSPYWVRASPH 401
P G P + + S + W+PP G ++ Y V R S ++
Sbjct: 8 PSGFPQNLHVTGLTTS----TTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQNI-- 60
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
DT ++GL+P Y ++ A G GPLS +
Sbjct: 61 -TTDTRFTLTGLKPDTTYDIKVRAWTSKG---SGPLSPSIQSR 99
Score = 64.2 bits (157), Expect = 1e-12
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 13/103 (12%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GSPVLGYLVEHRRTGSPYWVRASPH 740
P G P + + S + W+PP G ++ Y V R S ++
Sbjct: 8 PSGFPQNLHVTGLTTS----TTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQNI-- 60
Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
DT ++GL+P Y ++ A G GPLS +
Sbjct: 61 -TTDTRFTLTGLKPDTTYDIKVRAWTSKG---SGPLSPSIQSR 99
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 63.9 bits (156), Expect = 1e-12
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P K +++ +P+ I W+ S V Y + + TG V+
Sbjct: 4 VSSVPTKLEVVAATPT----SLLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPG 55
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
+ +SGL PG Y + A P ++ Y
Sbjct: 56 SSSTATISGLSPGVDYTITVYAYYSYYDLYYS--YSPSSINY 95
Score = 63.9 bits (156), Expect = 1e-12
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P K +++ +P+ I W+ S V Y + + TG V+
Sbjct: 4 VSSVPTKLEVVAATPT----SLLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPG 55
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
+ +SGL PG Y + A P ++ Y
Sbjct: 56 SSSTATISGLSPGVDYTITVYAYYSYYDLYYS--YSPSSINY 95
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 64.5 bits (157), Expect = 2e-12
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P K +++ +P+ I W+ P V Y + + TG V+
Sbjct: 28 VSDVPTKLEVVAATPT----SLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPG 79
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
+ +SGL+PG Y + A + G S+P+++ Y
Sbjct: 80 SKSTATISGLKPGVDYTITVYAVTGLRLMLAG--SKPISINY 119
Score = 64.5 bits (157), Expect = 2e-12
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 10/102 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P K +++ +P+ I W+ P V Y + + TG V+
Sbjct: 28 VSDVPTKLEVVAATPT----SLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPG 79
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
+ +SGL+PG Y + A + G S+P+++ Y
Sbjct: 80 SKSTATISGLKPGVDYTITVYAVTGLRLMLAG--SKPISINY 119
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 64.3 bits (157), Expect = 2e-12
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P Q S + ++W+ PE G + GY V + + + H V
Sbjct: 18 PSSAPRDVQARMLSST----TILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNV 72
Query: 404 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
D + L P Y ++ A +G GPLS + V + PS
Sbjct: 73 ADSQITTIGNLVPQKTYSVKVLAFTSIG---DGPLSSDIQVI--TQTGSGPS 119
Score = 64.3 bits (157), Expect = 2e-12
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P Q S + ++W+ PE G + GY V + + + H V
Sbjct: 18 PSSAPRDVQARMLSST----TILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNV 72
Query: 743 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
D + L P Y ++ A +G GPLS + V + PS
Sbjct: 73 ADSQITTIGNLVPQKTYSVKVLAFTSIG---DGPLSSDIQVI--TQTGSGPS 119
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 69.7 bits (169), Expect = 2e-12
Identities = 58/430 (13%), Positives = 110/430 (25%), Gaps = 57/430 (13%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM---VEDTELMVSGLEPGWRYQF 421
F +RW + G+ + + ++++TG W++ S L +
Sbjct: 23 FILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKL 80
Query: 422 RITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPT 481
RI AE S E + T R P + + A+ T
Sbjct: 81 RIRAEKE-NTSSW---YEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWAL 136
Query: 482 PKVSW-YKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
+S+ Y SS + + + I L E KA L
Sbjct: 137 DGLSFTYSLVIWKNSSGVEERIENIYSRHKIYK---LSPETTYCLKV---------KAAL 184
Query: 541 RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT 600
+ P + + +W + + +++
Sbjct: 185 LTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKW----DYTYANMTFQVQWL 240
Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKV-VMTLGKSVT 659
+L + + V + G + V + T
Sbjct: 241 HAFLKRNPGNHLYKWKQIPDCENVKTTQCVF-------PQNVFQKGIYLLRVQASDGNNT 293
Query: 660 LSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV 719
WSE + P + S S I P+ G +PV
Sbjct: 294 SFWSEEI---------KFDTEIQAFLLPPVFNIRSLSDSF-----HIYIGAPKQSGNTPV 339
Query: 720 -----LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVG-FSEP 773
L Y + S + + T++ V L+P Y + A + ++
Sbjct: 340 IQDYPLIYEIIFWENTSNAERKII---EKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKS 396
Query: 774 GPLSEPLTVT 783
S+ +
Sbjct: 397 SVFSDAVCEK 406
Score = 52.3 bits (124), Expect = 5e-07
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 15/107 (14%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV-----LGYLVEHRRTGSPYWVRA 398
PP + S S I P+ G +PV L Y + S +
Sbjct: 309 FLLPPVF-NIRSLSDSF-----HIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKI 362
Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVG-FSEPGPLSEPLTVT 444
+ T++ V L+P Y + A + ++ S+ +
Sbjct: 363 I---EKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEK 406
Score = 40.8 bits (94), Expect = 0.002
Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 9/144 (6%)
Query: 677 IVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV---LGYLVEHRRTGSPY 733
+ P + +++ ++W+ + V +L +
Sbjct: 196 VHCIKTTVENELPPPENIEVSVQNQNY-VLKWDYTYANMTFQVQWLHAFLKRNPGNHLYK 254
Query: 734 WVRAS-PHMVEDTELMVS-GLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 791
W + V+ T+ + + Y R+ A + S + T ++
Sbjct: 255 WKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKF--DTEIQAFLLP 312
Query: 792 PSF-IRALHDTTALEDEKPRNTNN 814
P F IR+L D+ + P+ + N
Sbjct: 313 PVFNIRSLSDSFHIYIGAPKQSGN 336
Score = 40.0 bits (92), Expect = 0.004
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM---VEDTELMVSGLEPGWRYQF 760
F +RW + G+ + + ++++TG W++ S L +
Sbjct: 23 FILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKL 80
Query: 761 RITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
RI AE S E + T R P
Sbjct: 81 RIRAEK-ENTSSW---YEVDSFTPFRKAQIGP 108
Score = 37.7 bits (86), Expect = 0.019
Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 3/134 (2%)
Query: 320 LYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP 379
L +R E+ T D + +K P + L + ++ + + +
Sbjct: 80 LRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGL 139
Query: 380 VLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 439
Y + + S R + L P Y ++ A + +
Sbjct: 140 SFTYSLVIWKNSSGVEERIENIYSRHK---IYKLSPETTYCLKVKAALLTSWKIGVYSPV 196
Query: 440 PLTVTYQRSPAAAP 453
T + P
Sbjct: 197 HCIKTTVENELPPP 210
Score = 35.4 bits (80), Expect = 0.11
Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 4/110 (3%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
GPP + L + ++ + + + Y + + S R
Sbjct: 105 QIGPP-EVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYS 163
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
+ L P Y ++ A + + T + P
Sbjct: 164 RHK---IYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPP 210
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 66.2 bits (161), Expect = 2e-12
Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 9/140 (6%)
Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
P + + + I+W P+ S + Y++ R S + +
Sbjct: 2 GPVEVFITETPSQPNS--HPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLN 56
Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALE 466
+ GL+PG Y+ ++ + G E + T S + + T
Sbjct: 57 SYTIKGLKPGVVYEGQLISIQQYGHQEV---TRFDFTTTSTSTPVTSNTVTGE-TTPFSP 112
Query: 467 DEKVEFTVQVEGIPTPKVSW 486
+V + VSW
Sbjct: 113 LVATSESVTEITASSFVVSW 132
Score = 64.7 bits (157), Expect = 8e-12
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 8/108 (7%)
Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
P + + + I+W P+ S + Y++ R S + +
Sbjct: 2 GPVEVFITETPSQPNS--HPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLN 56
Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ GL+PG Y+ ++ + G E + T S +
Sbjct: 57 SYTIKGLKPGVVYEGQLISIQQYGHQEV---TRFDFTTTSTSTPVTSN 101
Score = 61.2 bits (148), Expect = 1e-10
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 6/91 (6%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P + F + W V G+ VE+ + +
Sbjct: 109 PFSPLVATSESVTEITASS--FVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPS 162
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
T + + L PG +Y + + G
Sbjct: 163 TATSVNIPDLLPGRKYIVNVYQISEDGEQSL 193
Score = 61.2 bits (148), Expect = 1e-10
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 6/91 (6%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P + F + W V G+ VE+ + +
Sbjct: 109 PFSPLVATSESVTEITASS--FVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPS 162
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 773
T + + L PG +Y + + G
Sbjct: 163 TATSVNIPDLLPGRKYIVNVYQISEDGEQSL 193
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 67.5 bits (165), Expect = 3e-12
Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
P + + S + V + W PP + V L+++ G
Sbjct: 15 IDGPTQILVRDVSDT----VAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRLQPP 66
Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 463
++ V L PG RY+ I+A S+ S T AP +R T
Sbjct: 67 LSQYSVQALRPGSRYEVSISAVRGTNESDA---SSTQFTT----EIDAPKNLRVGSRTA 118
Score = 67.5 bits (165), Expect = 3e-12
Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
P + + S + V + W PP + V L+++ G
Sbjct: 15 IDGPTQILVRDVSDT----VAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRLQPP 66
Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
++ V L PG RY+ I+A S+ S T AP +R T
Sbjct: 67 LSQYSVQALRPGSRYEVSISAVRGTNESDA---SSTQFTT----EIDAPKNLRVGSRTA 118
Score = 65.6 bits (160), Expect = 1e-11
Identities = 34/200 (17%), Positives = 47/200 (23%), Gaps = 61/200 (30%)
Query: 624 VNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIV----- 678
V E AS T+ P +V S+ L W E + Y V
Sbjct: 88 VRGTNESDASSTQFTTE-IDAPKNLRVGSRTATSLDLEWDNSEAE----AQEYKVVYSTL 142
Query: 679 -----------------------------EY-FR-------PPGPP--GKPQLLPDSPS- 698
EY P + DSP
Sbjct: 143 AGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRD 202
Query: 699 -----LDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLE 753
++ W P+ Y + + P + T ++ LE
Sbjct: 203 LMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEVTVP--RDRTSYTLTDLE 256
Query: 754 PGWRYQFRITAENVVGFSEP 773
PG Y ITAE S
Sbjct: 257 PGAEYIISITAERGRQQSLE 276
Score = 64.4 bits (157), Expect = 3e-11
Identities = 24/222 (10%), Positives = 51/222 (22%), Gaps = 75/222 (33%)
Query: 637 TVTDRPLP--PGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEY-------------- 680
P+ P + V + W+ P + +++Y
Sbjct: 8 GGGGIPVIDGPTQILVRDVSDTVAFVEWTPPRAK----VDFILLKYGLVGGEGGKTTFRL 63
Query: 681 -------------------FR-------------------PPGPPGKPQLLPDSPSLDRD 702
P ++ + +
Sbjct: 64 QPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTAT---- 119
Query: 703 VFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYW--VRASPHMVEDTELMVSGLEPGWRYQF 760
+ W+ E + Y V + + V + T+ ++ L PG Y
Sbjct: 120 SLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGV 175
Query: 761 RITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
I+A S P T+ R+ +P + +
Sbjct: 176 GISAVM------NSKQSIPATMN-ARTELDSPRDLMVTASSE 210
Score = 64.1 bits (156), Expect = 5e-11
Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 17/139 (12%)
Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
A+ G N P ++ + + + W+ E + Y V
Sbjct: 87 AVRGTNESDASSTQFTTEIDAPKNLRVGSRTAT----SLDLEWDNSE----AEAQEYKVV 138
Query: 387 HRRTGSPYW--VRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
+ + V + T+ ++ L PG Y I+A S P T+
Sbjct: 139 YSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVM------NSKQSIPATMN 192
Query: 445 YQRSPAAAPSFIRALHDTT 463
R+ +P + +
Sbjct: 193 -ARTELDSPRDLMVTASSE 210
Score = 61.0 bits (148), Expect = 4e-10
Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 10/108 (9%)
Query: 327 AITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVE 386
A+ + P + S ++ W P+ Y +
Sbjct: 179 AVMNSKQSIPATMNARTELDSPRDLMVTASSE----TSISLIWTKAS----GPIDHYRIT 230
Query: 387 HRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
+ P + T ++ LEPG Y ITAE S
Sbjct: 231 FTPSSGISSEVTVP--RDRTSYTLTDLEPGAEYIISITAERGRQQSLE 276
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 67.7 bits (164), Expect = 3e-12
Identities = 42/317 (13%), Positives = 74/317 (23%), Gaps = 41/317 (12%)
Query: 480 PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR 539
P P++ W R+QR+ S + + + + +
Sbjct: 33 PEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQVE 92
Query: 540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITH 599
LR P P + L +W E
Sbjct: 93 LRAGYP-----PAIPHNLSCLMNLTTSSL----------ICQWEPGPETHLP-------- 129
Query: 600 TDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVT 659
T L S +G+ V G+ S + + ++
Sbjct: 130 TSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLL---LYQNMGIWVQAENALG 186
Query: 660 LSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQL--LPDSPSLDRDVFTIRWEPPEYDGGS 717
S S PP + P++ + WEP +
Sbjct: 187 TSMSPQL--------CLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHI 238
Query: 718 PVLGYLVEHRRT-GSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL 776
+ H+ G W P +E + + GL P Y +I
Sbjct: 239 N-QKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDW 297
Query: 777 SEPLTVTYQRSPAAAPS 793
S L + + A +
Sbjct: 298 SPSLELR---TTERAAA 311
Score = 59.6 bits (143), Expect = 2e-09
Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 5/120 (4%)
Query: 336 DLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT-GSPY 394
D V+K P P++ + WEP + + H+ G
Sbjct: 196 DPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHIN-QKCELRHKPQRGEAS 254
Query: 395 WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
W P +E + + GL P Y +I S L + + A +
Sbjct: 255 WALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR---TTERAAA 311
Score = 43.0 bits (100), Expect = 4e-04
Identities = 23/223 (10%), Positives = 51/223 (22%), Gaps = 42/223 (18%)
Query: 572 MAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV 631
P P W E G + ++ + + + + + + +
Sbjct: 29 SHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQIL 88
Query: 632 ASFLVTVTDRPLPPGKAKVVMTLGK-SVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKP 690
+ P P +M L S+ W EP + ++ ++ F+ G
Sbjct: 89 DQVELRAGYPPAIPHNLSCLMNLTTSSLICQW-EPGPETHLPT-SFTLKSFKSRGNC--- 143
Query: 691 QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS 750
+ + ++ +
Sbjct: 144 ----------------QTQGDSI----------LDCVPKDGQSHCS----------IPRK 167
Query: 751 GLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
L + AEN +G S L + P +
Sbjct: 168 HLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRT 210
Score = 42.2 bits (98), Expect = 6e-04
Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 7/114 (6%)
Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
PP P L +L +WEP + P L + G+ S
Sbjct: 98 PPAIPHNLSCLMNLTTSSLICQWEPGP-ETHLPTSFTLKSFKSRGNCQTQGDSILDCVPK 156
Query: 407 E------LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ + L + AEN +G S L + P +
Sbjct: 157 DGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRT 210
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 62.5 bits (152), Expect = 4e-12
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
T+ W PP + + GY + + + P + T + ++GL PG Y +
Sbjct: 18 ITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVY 73
Query: 425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 455
A S PL T
Sbjct: 74 ALKDNQ------ESPPLVGTQTTGGHHHHHH 98
Score = 62.5 bits (152), Expect = 4e-12
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
T+ W PP + + GY + + + P + T + ++GL PG Y +
Sbjct: 18 ITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVY 73
Query: 764 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 794
A S PL T
Sbjct: 74 ALKDNQ------ESPPLVGTQTTGGHHHHHH 98
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 62.8 bits (152), Expect = 5e-12
Identities = 16/110 (14%), Positives = 27/110 (24%), Gaps = 10/110 (9%)
Query: 456 IRALHDTTALEDEKVEFTVQVEGIPTPKVS--WYKDGFEIFS---SRRQRIVTDND---- 506
+ H EK+ + W + R
Sbjct: 12 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71
Query: 507 -ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYE 555
+STL I D+G C A++ +R+ P + E
Sbjct: 72 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGME 121
Score = 51.3 bits (122), Expect = 6e-08
Identities = 20/113 (17%), Positives = 31/113 (27%), Gaps = 20/113 (17%)
Query: 540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA--RWLHNGEPLTSG---GR 594
+ L I L GE + L + W + R
Sbjct: 10 VVLSPSHGIELSV----------GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR 59
Query: 595 YEITHTDRYLN-----LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
T + + L I R+D+G Y + L S V V ++P
Sbjct: 60 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 67.9 bits (166), Expect = 1e-11
Identities = 37/334 (11%), Positives = 111/334 (33%), Gaps = 16/334 (4%)
Query: 11 LRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYL-LMRKERQEYLAMKSSA 69
+ I Q R LA R+ + IQ R ++ +
Sbjct: 791 ITDVIIAFQAQCRGYLA-RKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPL 849
Query: 70 VKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAA 129
+K+ +Q + Q+ + + +E + + L + KL + + A
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 130 YTELKQACVSVQQRWRANL---------TMRKQRAHFLLMKQKASVIQQWYRNTKLMRLE 180
E + ++ +++ + ++ L +K + QQ + + E
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQ--LQAEKKKMQQQMLDLEEQLEEE 967
Query: 181 ASYLHELKAATITIQRRYR-ANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYA 239
+ +L+ +T + + + ++ L ++ R + +E A
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027
Query: 240 ELKQARRFRFKLNLRKYERVIELLKLKRE--QERQEKYRHQCAVKIQSLWKMYRVRKKFA 297
+ + + + + + E ++ + R+ ++ + K + + + + ++ +
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087
Query: 298 DIIEQKKQAKKTADNQFENQAPLYVRLEEAITGL 331
+ +K++ + A + E++ + I L
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121
Score = 61.0 bits (148), Expect = 2e-09
Identities = 32/272 (11%), Positives = 90/272 (33%), Gaps = 28/272 (10%)
Query: 48 YFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLK 107
+FR +L E + L + + Q R AR+ + + +
Sbjct: 774 FFRTGVLAHLEEERDLKITDVIIAFQAQCR----GYLARKAFAKRQ-----------QQL 818
Query: 108 HATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVI 167
+ IQ ++ M + L + + R M+ + K++
Sbjct: 819 ESIFCIQYNVRS--FMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKA 876
Query: 168 QQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQ-RERYVALRTATITIQTRFR 226
+ +L LE + + + +Q + +A + + E V L ++
Sbjct: 877 EA-----ELKELEQKHTQLCEEKNL-LQEKLQAETELYAEAEEMRVRLAAKKQELEEILH 930
Query: 227 AYLI-AKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQS 285
+ + + +L+ ++ + + + E +E + R++ + EK KI+
Sbjct: 931 EMEARIEEEEERSQQLQAEKK-KMQQQMLDLEEQLEEEEAARQKLQLEK--VTADGKIKK 987
Query: 286 LWKMYRVRKKFADIIEQKKQAKKTADNQFENQ 317
+ + + + + ++++ + +
Sbjct: 988 MEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019
Score = 48.7 bits (116), Expect = 1e-05
Identities = 32/224 (14%), Positives = 62/224 (27%), Gaps = 37/224 (16%)
Query: 121 LLMKRDRAAYTELKQACVSVQQR-------WRANLTMRKQRAHFL---------LMKQKA 164
L + + KQAC+ + + +R + R L +
Sbjct: 736 LAANAIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVI 795
Query: 165 SVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTR 224
Q R L R + + + IQ R+ + L +
Sbjct: 796 IAFQAQCR-GYLARKAFAKRQQQLESIFCIQYNVRSFMN-VXHWPWM-XLFFXIXPLLKV 852
Query: 225 FRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQ 284
R + + +E K ER + +E E++ + +Q
Sbjct: 853 TRQEEEMQAKDEELQRTK--------------ERQQKAEAELKELEQKHTQLCEEKNLLQ 898
Query: 285 SLWKMYRVRKKFADIIEQKKQAKKTADNQFENQA-PLYVRLEEA 327
+ A+ + + AKK + E + R+EE
Sbjct: 899 EKLQAETELYAEAEEMRVRLAAKK---QELEEILHEMEARIEEE 939
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 65.3 bits (158), Expect = 1e-11
Identities = 31/246 (12%), Positives = 62/246 (25%), Gaps = 57/246 (23%)
Query: 447 RSPAAAPSFIRALHDTTALEDEKVEFTVQV---EGIPTPKVSW---------------YK 488
RS P + E V V E +V W Y
Sbjct: 1 RSQGL-PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYY 59
Query: 489 DGFEIFSSR-RQRIVTDNDIS----TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
+ + R + R D +L++ DEG C + + K + L
Sbjct: 60 SNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119
Query: 544 APPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP---TARWLHNGEPLTSGGRYEITHT 600
P + L +G+ +++ S+ W+ + T +
Sbjct: 120 VLP------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDS 173
Query: 601 DRYLN------------------------LRISDARRADRGEYQAHGVNSLGEDVASFLV 636
+ +++ + +D+G Y E + ++
Sbjct: 174 NMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233
Query: 637 TVTDRP 642
V
Sbjct: 234 HVVQDE 239
Score = 47.9 bits (113), Expect = 6e-06
Identities = 32/253 (12%), Positives = 63/253 (24%), Gaps = 56/253 (22%)
Query: 340 VIKKPP---GPPGKPQLLP--DSPSLDRDVFTIRW--EPPEYDGGSPVLGYLVEHRRTGS 392
+ P G+ L+ + ++ V + W + D VL Y
Sbjct: 8 LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTG 67
Query: 393 PYWVRASPH---MVEDTELMVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPLTVTYQ 446
+ R+ D L++ ++ G Y I + + V
Sbjct: 68 RFQNRSHLVGDTFHNDGSLLLQDVQKADEGI-YTCEI-------RLKNESMVMKKPVELW 119
Query: 447 RSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP---KVSWYKDG------------- 490
P D + + ++ KV+W
Sbjct: 120 VLPEEP-------RDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYD 172
Query: 491 -------FEIFSSRRQRIVTDNDIS----TLIIHQAALMDEGEIKCTATNRAGHSITKAR 539
F+ R R+ DIS ++ + D+G C+ S
Sbjct: 173 SNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIV 232
Query: 540 LR-LEAPPTIRLP 551
L ++ +
Sbjct: 233 LHVVQDEFQRTIS 245
Score = 40.6 bits (94), Expect = 0.002
Identities = 16/111 (14%), Positives = 30/111 (27%), Gaps = 22/111 (19%)
Query: 571 SMAGMPPPTARWLH---------------NGEPLTSG---GRYEITHTDRYLN--LRISD 610
WL + + +G R + + + L + D
Sbjct: 31 RTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQD 90
Query: 611 ARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
++AD G Y V V + P P +V +G + +
Sbjct: 91 VQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRV--RVGDTTQMR 139
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 65.6 bits (159), Expect = 2e-11
Identities = 33/223 (14%), Positives = 57/223 (25%), Gaps = 25/223 (11%)
Query: 437 LSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG---IPTPKVSWYKDGFEI 493
+ +T +P A + + + QVEG V + E+
Sbjct: 74 STAKTFLTVYWTP---ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL 130
Query: 494 FSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH--------SITKARLRLEAP 545
+R+ V + T + C + +L+
Sbjct: 131 ---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVL 187
Query: 546 PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA---RWLHNGEPLTSGGRYEITHTDR 602
P P Q + E+ + S+ G+ P + + L Y D
Sbjct: 188 P--ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY---GNDS 242
Query: 603 YLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
+ D G + LG L TVT P
Sbjct: 243 FSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA 285
Score = 51.0 bits (121), Expect = 8e-07
Identities = 23/214 (10%), Positives = 55/214 (25%), Gaps = 25/214 (11%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDE 520
V T + ++ + + + + + ++
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPKLLGIET-------PLPKKELLLPGNNRKVYELSNVQED 60
Query: 521 GEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP-- 578
+ C + G S K L + P + +G+ + L+ + G P
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVYWTP--ERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 579 -TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEY--------QAHGVNSLGE 629
T L + L R + + R + + G+
Sbjct: 119 LTVVLLRGEKELK---REPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFEN 175
Query: 630 DVASFLVTVTDRPLPPGK--AKVVMTLGKSVTLS 661
A + + P P + + V+ + T+
Sbjct: 176 TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVV 209
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 61.2 bits (148), Expect = 2e-11
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 12/101 (11%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIP---TPKVSWYKDG-FEIFSSRRQRI------ 501
F+ D + F+ +V G P V W+K ++ S Q +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 502 --VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
+ + L I A G +C + + + L
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104
Score = 49.2 bits (117), Expect = 3e-07
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 563 GEIIKLKVSMAGMP---PPTARWLHNGE---PLTSGGRYEITHTDR------YLNLRISD 610
G I +AG PP +W G ++ + L I+D
Sbjct: 19 GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITD 78
Query: 611 ARRADRGEYQAHGVNSLGEDVASFLVTVTD 640
A+ A G Y+ D ++F +TV +
Sbjct: 79 AQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 60.6 bits (147), Expect = 2e-11
Identities = 19/104 (18%), Positives = 27/104 (25%), Gaps = 12/104 (11%)
Query: 440 PLTVTYQRSPAAAPSF-IRALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSR 497
PL P+ + + V F + P + W + SR
Sbjct: 2 PLAA-----PSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR 56
Query: 498 RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
D + L I D G CT +N A L
Sbjct: 57 A----MDFN-GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
Score = 51.7 bits (124), Expect = 2e-08
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 8/97 (8%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTD 601
P + + +Q G + + + P T W +
Sbjct: 7 SKPIMVTVEEQ--RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI- 63
Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
L I + + +D G Y G N D + + V
Sbjct: 64 ----LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 61.0 bits (148), Expect = 2e-11
Identities = 21/115 (18%), Positives = 32/115 (27%), Gaps = 16/115 (13%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIR--WEPPEYDGGSP---VLGYLVEHRRTGSPYWVRA 398
P PP Q + + +R W V Y V R + S
Sbjct: 18 PMLPPVGVQAVALTHD------AVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYK 71
Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 452
S +GL+P Y+F + S TY+ S ++
Sbjct: 72 SED-TTSLSYTATGLKPNTMYEFSVMVTKNRR---SSTWSMTAHATTYEASGPSS 122
Score = 61.0 bits (148), Expect = 2e-11
Identities = 21/115 (18%), Positives = 32/115 (27%), Gaps = 16/115 (13%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIR--WEPPEYDGGSP---VLGYLVEHRRTGSPYWVRA 737
P PP Q + + +R W V Y V R + S
Sbjct: 18 PMLPPVGVQAVALTHD------AVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYK 71
Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 791
S +GL+P Y+F + S TY+ S ++
Sbjct: 72 SED-TTSLSYTATGLKPNTMYEFSVMVTKNRR---SSTWSMTAHATTYEASGPSS 122
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 61.2 bits (149), Expect = 3e-11
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 13/120 (10%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GSPVLGYLVEHRRTGSPYWVRASPH 401
P PP K + + + W PP D G + Y V + R
Sbjct: 18 PSAPPQKVMCVSMGST----TVRVSWVPPPADSRNG-VITQYSVAYEAVDGEDRGRHVVD 72
Query: 402 MV--EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSFIRA 458
+ E + + GLE Y+ + A VG PGP S P+ V T + P+ P + +
Sbjct: 73 GISREHSSWDLVGLEKWTEYRVWVRAHTDVG---PGPESSPVLVRTDEDVPSGPPRKVES 129
Score = 61.2 bits (149), Expect = 3e-11
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 13/120 (10%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GSPVLGYLVEHRRTGSPYWVRASPH 740
P PP K + + + W PP D G + Y V + R
Sbjct: 18 PSAPPQKVMCVSMGST----TVRVSWVPPPADSRNG-VITQYSVAYEAVDGEDRGRHVVD 72
Query: 741 MV--EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAPSFIRA 797
+ E + + GLE Y+ + A VG PGP S P+ V T + P+ P + +
Sbjct: 73 GISREHSSWDLVGLEKWTEYRVWVRAHTDVG---PGPESSPVLVRTDEDVPSGPPRKVES 129
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 60.2 bits (146), Expect = 3e-11
Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 16/112 (14%)
Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
P PP L +P + W+P + YLV
Sbjct: 7 GPLPPPRALTLAAVTP----RTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQ 57
Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
V E+++ GLEPG Y+ + + SE R+P + PS
Sbjct: 58 VGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEA-------RGIRARTPTSGPS 102
Score = 59.5 bits (144), Expect = 5e-11
Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 16/112 (14%)
Query: 682 RPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
P PP L +P + W+P + YLV
Sbjct: 7 GPLPPPRALTLAAVTP----RTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQ 57
Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
V E+++ GLEPG Y+ + + SE R+P + PS
Sbjct: 58 VGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEA-------RGIRARTPTSGPS 102
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 60.1 bits (146), Expect = 4e-11
Identities = 23/117 (19%), Positives = 31/117 (26%), Gaps = 19/117 (16%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT--GSPYWVRASPH 401
PP S + WE PV V + + G A +
Sbjct: 7 GLAPPRHLGFSDVSHD----AARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGN 58
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 458
T M+ L Y R+T G S LT A +PS +
Sbjct: 59 ---ATSAMLGPLSSSTTYTVRVTCLYPGG------GSSTLTGRVTTKKAPSPSSGPS 106
Score = 60.1 bits (146), Expect = 4e-11
Identities = 23/117 (19%), Positives = 31/117 (26%), Gaps = 19/117 (16%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT--GSPYWVRASPH 740
PP S + WE PV V + + G A +
Sbjct: 7 GLAPPRHLGFSDVSHD----AARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGN 58
Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRA 797
T M+ L Y R+T G S LT A +PS +
Sbjct: 59 ---ATSAMLGPLSSSTTYTVRVTCLYPGG------GSSTLTGRVTTKKAPSPSSGPS 106
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 59.0 bits (143), Expect = 6e-11
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
I WE P+ V Y V + E+ + GL PG Y +
Sbjct: 18 IKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVV 73
Query: 425 AENVVGFSEP 434
A + S+P
Sbjct: 74 ALHDDMESQP 83
Score = 59.0 bits (143), Expect = 6e-11
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
I WE P+ V Y V + E+ + GL PG Y +
Sbjct: 18 IKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVV 73
Query: 764 AENVVGFSEP 773
A + S+P
Sbjct: 74 ALHDDMESQP 83
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 59.3 bits (144), Expect = 7e-11
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P + ++ + + I W PP PV G+ + + P
Sbjct: 2 RLDAPSQIEVKDVTDT----TALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTE 53
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
++ + + L+P Y+ + + S P
Sbjct: 54 DENQYSIGNLKPDTEYEVSLISRRGDMSSNP 84
Score = 59.3 bits (144), Expect = 7e-11
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P + ++ + + I W PP PV G+ + + P
Sbjct: 2 RLDAPSQIEVKDVTDT----TALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTE 53
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 773
++ + + L+P Y+ + + S P
Sbjct: 54 DENQYSIGNLKPDTEYEVSLISRRGDMSSNP 84
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 59.8 bits (145), Expect = 7e-11
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 10/113 (8%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG-GSPVLGYLVEHRRTGSPYWVRASPHM 402
P P + + D IRW P ++GY + H + +
Sbjct: 18 PSVAPLNVTV---FLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEV 74
Query: 403 VED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
++ + +S RI A G GP S+P+ + + PS
Sbjct: 75 GQNGSRARISVQVHNATCTVRIAAVTRGG---VGPFSDPVKIFI--PAHSGPS 122
Score = 59.8 bits (145), Expect = 7e-11
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 10/113 (8%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG-GSPVLGYLVEHRRTGSPYWVRASPHM 741
P P + + D IRW P ++GY + H + +
Sbjct: 18 PSVAPLNVTV---FLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEV 74
Query: 742 VED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
++ + +S RI A G GP S+P+ + + PS
Sbjct: 75 GQNGSRARISVQVHNATCTVRIAAVTRGG---VGPFSDPVKIFI--PAHSGPS 122
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 61.9 bits (150), Expect = 1e-10
Identities = 24/129 (18%), Positives = 36/129 (27%), Gaps = 13/129 (10%)
Query: 431 FSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDG 490
S G + +TV I + E T Q EG P +V W
Sbjct: 99 ISYGGADYKRITVKVNAPYNKINQRI----LVVDPVTSEHELTCQAEGYPKAEVIWTSSD 154
Query: 491 FEIFSSRRQRIVTDND------ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEA 544
++ S + + + STL I+ CT A L +
Sbjct: 155 HQVLSGKTTTTNSKREEKLFNVTSTLRINTT---TNEIFYCTFRRLDPEENHTAELVIPE 211
Query: 545 PPTIRLPKQ 553
P P +
Sbjct: 212 LPLAHPPNE 220
Score = 54.6 bits (131), Expect = 3e-08
Identities = 24/211 (11%), Positives = 46/211 (21%), Gaps = 32/211 (15%)
Query: 463 TALEDEKVEFTVQVEGIPTP-----KVSWYKDGFEIFSSRRQRIVTDNDIS--------- 508
+ + V W + I S
Sbjct: 12 VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71
Query: 509 ---------TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLL 559
L I L D G +C + G + +++ AP +
Sbjct: 72 KDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQRILVVD-- 128
Query: 560 FEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRIS---DARRADR 616
+ +L G P W + + SG ++
Sbjct: 129 -PVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTN 187
Query: 617 GEYQAHGVNSLGEDVASFLVTVTDRPL--PP 645
+ E+ + + + + PL PP
Sbjct: 188 EIFYCTFRRLDPEENHTAELVIPELPLAHPP 218
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 58.3 bits (141), Expect = 1e-10
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 8/91 (8%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
+ + S F + W V G+ VE+ + +
Sbjct: 5 SHLVATSESVTEITAS----SFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPS 56
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 434
T + + L PG +Y + + G
Sbjct: 57 TATSVNIPDLLPGRKYIVNVYQISEDGEQSL 87
Score = 58.3 bits (141), Expect = 1e-10
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 8/91 (8%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
+ + S F + W V G+ VE+ + +
Sbjct: 5 SHLVATSESVTEITAS----SFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPS 56
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEP 773
T + + L PG +Y + + G
Sbjct: 57 TATSVNIPDLLPGRKYIVNVYQISEDGEQSL 87
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 58.8 bits (142), Expect = 1e-10
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 17/106 (16%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSS----------RRQRI 501
+ L D + E F++ + I W+ +G E+ S+ R RI
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 502 VTDNDISTLIIHQAALMDEG-EIKCTATNRAGHSITKARLRLEAPP 546
LI+H D G + + A L ++
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALVGFSCPGVQ----DSAALTIQESS 107
Score = 40.4 bits (94), Expect = 4e-04
Identities = 25/113 (22%), Positives = 37/113 (32%), Gaps = 22/113 (19%)
Query: 546 PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTS----------GGRY 595
T RL ED +++ GE + ++ + T W NGE L S RY
Sbjct: 7 GTARLVAGLEDVQVYD-GEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRY 63
Query: 596 EITHTDRYLNLRISDARRADRGEY---QAHGVNSLGEDVASFLVTVTDRPLPP 645
I L + + D G GV S +T+ + P
Sbjct: 64 RIEQKGLQHRLILHAVKHQDSGALVGFSCPGVQD------SAALTIQESSGPS 110
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 57.8 bits (140), Expect = 2e-10
Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
+ W P+ + ++++++ + + ++GL+PG Y I
Sbjct: 18 LRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIY 73
Query: 425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
S PL+ +
Sbjct: 74 GVKGGH------RSNPLSAEFTTGGHHHHH 97
Score = 57.8 bits (140), Expect = 2e-10
Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
+ W P+ + ++++++ + + ++GL+PG Y I
Sbjct: 18 LRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIY 73
Query: 764 AENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
S PL+ +
Sbjct: 74 GVKGGH------RSNPLSAEFTTGGHHHHH 97
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 58.9 bits (143), Expect = 2e-10
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 11/113 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP--EYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
P P L + I W+PP G + GY + +R+ V +
Sbjct: 18 PSAAPQNLSLEVRNSK----SIMIHWQPPAPATQNG-QITGYKIRYRKASRKSDVTETLV 72
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAP 453
++ GL+ G Y FR+ A + G GP ++ L+ T++
Sbjct: 73 SGTQLSQLIEGLDRGTEYNFRVAALTING---TGPATDWLSAETFESDLDETR 122
Score = 58.9 bits (143), Expect = 2e-10
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 11/113 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP--EYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
P P L + I W+PP G + GY + +R+ V +
Sbjct: 18 PSAAPQNLSLEVRNSK----SIMIHWQPPAPATQNG-QITGYKIRYRKASRKSDVTETLV 72
Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAAP 792
++ GL+ G Y FR+ A + G GP ++ L+ T++
Sbjct: 73 SGTQLSQLIEGLDRGTEYNFRVAALTING---TGPATDWLSAETFESDLDETR 122
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 58.4 bits (141), Expect = 2e-10
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 12/113 (10%)
Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
P +++ +P+ I W+ Y + + TG V+
Sbjct: 4 SDVPRDLEVVAATPT----SLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGP 55
Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGP---LSEPLTVTYQRSPAAAPS 454
+SGL+PG Y + A GP P+++ Y R+ PS
Sbjct: 56 VHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINY-RTEIDKPS 107
Score = 58.4 bits (141), Expect = 2e-10
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 12/113 (10%)
Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
P +++ +P+ I W+ Y + + TG V+
Sbjct: 4 SDVPRDLEVVAATPT----SLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGP 55
Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGP---LSEPLTVTYQRSPAAAPS 793
+SGL+PG Y + A GP P+++ Y R+ PS
Sbjct: 56 VHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINY-RTEIDKPS 107
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 58.3 bits (141), Expect = 2e-10
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 19/114 (16%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYW--VRASP 400
P PPG + + WE + S V GY V +R + + +
Sbjct: 18 PSQPPGNVVWNATDTKV-----LLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNK 72
Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
E L Y + A G G SE + + R ++ PS
Sbjct: 73 TSAELV------LPIKEDYIIEVKATTDGG---DGTSSEQIRI--PRITSSGPS 115
Score = 58.3 bits (141), Expect = 2e-10
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 19/114 (16%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEP-PEYDGGSPVLGYLVEHRRTGSPYW--VRASP 739
P PPG + + WE + S V GY V +R + + +
Sbjct: 18 PSQPPGNVVWNATDTKV-----LLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNK 72
Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
E L Y + A G G SE + + R ++ PS
Sbjct: 73 TSAELV------LPIKEDYIIEVKATTDGG---DGTSSEQIRI--PRITSSGPS 115
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 58.5 bits (142), Expect = 2e-10
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 15/116 (12%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP--EYDGGSPVLGYLVEHRRTGSPYWVRASPH 401
P GPP L P + + W+ P E G + GY + +R + S
Sbjct: 15 PDGPPMDVTLQPVTSQS----IQVTWKAPKKELQNG-VIRGYQIGYRENSPGSNGQYSIV 69
Query: 402 MV----EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 452
+ + + L+ +Y + A N G GP S + T + P++
Sbjct: 70 EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAG---TGPSSSEINATTLESGPSSG 122
Score = 58.5 bits (142), Expect = 2e-10
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 15/116 (12%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP--EYDGGSPVLGYLVEHRRTGSPYWVRASPH 740
P GPP L P + + W+ P E G + GY + +R + S
Sbjct: 15 PDGPPMDVTLQPVTSQS----IQVTWKAPKKELQNG-VIRGYQIGYRENSPGSNGQYSIV 69
Query: 741 MV----EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 791
+ + + L+ +Y + A N G GP S + T + P++
Sbjct: 70 EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAG---TGPSSSEINATTLESGPSSG 122
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 58.2 bits (140), Expect = 2e-10
Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 11/99 (11%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVS--WYKDGFEIFSSRRQRIVTDND---- 506
P +A+ V FT ++ W D + + +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 507 ----ISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARL 540
+ L + EG +C +N G S + A L
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109
Score = 45.8 bits (108), Expect = 4e-06
Identities = 16/87 (18%), Positives = 23/87 (26%), Gaps = 11/87 (12%)
Query: 563 GEIIKLKVSMAGMPPP--TARWLHNGEPLTSGGRYEITHTDRYLN--------LRISDAR 612
G + S A T W + E L H LR+ +
Sbjct: 25 GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84
Query: 613 RADRGEYQAHGVNSLGEDVAS-FLVTV 638
G YQ N G + +T+
Sbjct: 85 FTSEGXYQCVISNHFGSSYSVXAXLTI 111
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 63.9 bits (156), Expect = 3e-10
Identities = 22/273 (8%), Positives = 75/273 (27%), Gaps = 25/273 (9%)
Query: 5 RSDYLNLRAKTILIQTLWRSKLA-----MRRDEREFCMIRSKTIVIQKYFRGYLLMRKER 59
R L L R+ ++ E +Q + + K+
Sbjct: 758 REQRLGSEQ--TKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAH-KEYKKT 814
Query: 60 QEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKA 119
++ + +++ Y +L Q + + + + ++ A++
Sbjct: 815 EKPPKGQ-EVSELEAIYNSL----QTKLRLIKREPFVAPAGLTPNEIDSTWSALEK--AE 867
Query: 120 KLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRL 179
+ + R K+ V +Q+ R + + ++
Sbjct: 868 QEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKN 927
Query: 180 EASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYA 239
++ E + +++ + +++ + + + + ++
Sbjct: 928 LEAFDGECQ----SLEGQSNSDLLSILAQLTELNYNGVPELTERKDTF------FAQQWT 977
Query: 240 ELKQARRFRFKLNLRKYERVIELLKLKREQERQ 272
+K + L + ER+ ++ L
Sbjct: 978 GVKSSAETYKNTLLAELERLQKIEDLHHHHHHH 1010
Score = 57.8 bits (140), Expect = 2e-08
Identities = 20/208 (9%), Positives = 56/208 (26%), Gaps = 29/208 (13%)
Query: 119 AKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMR 178
A++ R++ L RA + + W +
Sbjct: 752 ARIEEAREQR----LGSEQTKSDYLKRA-NELVQ-----------------WIN----DK 785
Query: 179 LEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEY 238
+ + + ++Q A+ + + ++ + +
Sbjct: 786 QASLESRDFGDSIESVQSFMNAHKEYKKTEKP--PKGQEVSELEAIYNSLQTKLRLIKRE 843
Query: 239 AELKQARRFRFKLNLRKYERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKFAD 298
+ A +++ + + K + + AV +Q ++ + + +A
Sbjct: 844 PFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWAT 903
Query: 299 IIEQKKQAKKTADNQFENQAPLYVRLEE 326
+ +T D+ QA LE
Sbjct: 904 TKSVYLGSNETGDSITAVQA-KLKNLEA 930
Score = 52.4 bits (126), Expect = 8e-07
Identities = 32/321 (9%), Positives = 88/321 (27%), Gaps = 59/321 (18%)
Query: 19 QTLWRSKLAMRRDEREFCMIRSKTIVIQK----------YFRGYLLMR--KERQEYLAMK 66
L + D ++ K + I +FR L R + R++ L
Sbjct: 706 YLLAPNVPRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEEAREQRLG-- 763
Query: 67 SSAVKIQEWYRNLQC-----MRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKL 121
S K R + +QA + + ++Q+ A
Sbjct: 764 SEQTKSDYLKRANELVQWINDKQASLES--------------RDFGDSIESVQSFMNAHK 809
Query: 122 LMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEA 181
K+ ++ + + A + ++ K +I++ +
Sbjct: 810 EYKK---------------TEKPPKGQEVSELEAIYNSLQTKLRLIKRE----PFVAPAG 850
Query: 182 SYLHELKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAEL 241
+E+ + +++ + + R + + +Q R +N +
Sbjct: 851 LTPNEIDSTWSALEKAEQEHAEAL--RIELKRQKKIAVLLQKYNRILKKLENWATTKSVY 908
Query: 242 KQARRFRFKLN-----LRKYERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKF 296
+ + L+ E + Q + + + + + ++
Sbjct: 909 LGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERK 968
Query: 297 ADIIEQKKQAKKTADNQFENQ 317
Q+ K++ ++N
Sbjct: 969 DTFFAQQWTGVKSSAETYKNT 989
Score = 29.6 bits (67), Expect = 7.2
Identities = 13/117 (11%), Positives = 32/117 (27%), Gaps = 19/117 (16%)
Query: 225 FRAYLIAK--NQRDEY----AELKQA--RRFRFKLNLRKYERVIELLKLKREQERQEKYR 276
FRA +A+ R++ R + + +E
Sbjct: 746 FRAGQLARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGD--------- 796
Query: 277 HQCAVKIQSLWKMYRVRKKFADIIEQKKQAKKTADNQFENQAPLYVRLEEAITGLNV 333
+QS ++ KK + ++ ++ A ++ E + +
Sbjct: 797 --SIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGL 851
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 57.7 bits (140), Expect = 4e-10
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD---GGSPVLGYLVEHRRTGSPYWVRASP 400
P PP L + + W PP G + GY + HR+T +
Sbjct: 28 PSAPPQNVSLEVVNSR----SIKVSWLPPPSGTQNG--FITGYKIRHRKTTRRGEMETLE 81
Query: 401 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
+ + +GLE G +Y F+++A V G GP S T
Sbjct: 82 --PNNLWYLFTGLEKGSQYSFQVSAMTVNG---TGPPSNWYTAE 120
Score = 57.7 bits (140), Expect = 4e-10
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD---GGSPVLGYLVEHRRTGSPYWVRASP 739
P PP L + + W PP G + GY + HR+T +
Sbjct: 28 PSAPPQNVSLEVVNSR----SIKVSWLPPPSGTQNG--FITGYKIRHRKTTRRGEMETLE 81
Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
+ + +GLE G +Y F+++A V G GP S T
Sbjct: 82 --PNNLWYLFTGLEKGSQYSFQVSAMTVNG---TGPPSNWYTAE 120
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 58.1 bits (140), Expect = 4e-10
Identities = 27/171 (15%), Positives = 46/171 (26%), Gaps = 47/171 (27%)
Query: 623 GVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFR 682
G + D + K ++V L+WS P + V
Sbjct: 1 GSSGSSGDEET--KAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPE-- 56
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
+ GY V TG + S ++
Sbjct: 57 ------------------------------------LYGYEVLISSTGKDGKYK-SVYVG 79
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
E+T + ++ L+P Y ++ AE G SE T + + P
Sbjct: 80 EETNITLNDLKPAMDYHAKVQAEYNSI---KGTPSEAEIFT---TLSCEPD 124
Score = 55.8 bits (134), Expect = 2e-09
Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 27/123 (21%)
Query: 344 PPGPPGKPQLLPDSPSLDRDV----FTIRWEPPEYDGGS--------PVLGYLVEHRRTG 391
KP D+ + W PP + GY V TG
Sbjct: 17 LLSNIVKPVAS--------DIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTG 68
Query: 392 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA 451
+ S ++ E+T + ++ L+P Y ++ AE G SE T + +
Sbjct: 69 KDGKYK-SVYVGEETNITLNDLKPAMDYHAKVQAEYNSI---KGTPSEAEIFT---TLSC 121
Query: 452 APS 454
P
Sbjct: 122 EPD 124
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 57.4 bits (139), Expect = 5e-10
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 13/112 (11%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P + + S S ++ WE V Y + + +
Sbjct: 18 PSEAPTEVGVKVLSSS----EISVHWEHVL---EKIVESYQIRYWAAHDKEEAANRVQVT 70
Query: 404 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
+ L P +Y + A N G GP S+ + + A+ PS
Sbjct: 71 SQEYSARLENLLPDTQYFIEVGACNSAG---CGPPSDMIEAFTK--KASGPS 117
Score = 57.4 bits (139), Expect = 5e-10
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 13/112 (11%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P + + S S ++ WE V Y + + +
Sbjct: 18 PSEAPTEVGVKVLSSS----EISVHWEHVL---EKIVESYQIRYWAAHDKEEAANRVQVT 70
Query: 743 ED-TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ L P +Y + A N G GP S+ + + A+ PS
Sbjct: 71 SQEYSARLENLLPDTQYFIEVGACNSAG---CGPPSDMIEAFTK--KASGPS 117
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 56.8 bits (137), Expect = 5e-10
Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 12/114 (10%)
Query: 343 KPPGPPGKPQLLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSPYWVRAS 399
P PP Q S I W ++ + Y V + +
Sbjct: 7 GPMMPPVGVQASILSHD----TIRITWADNSLPKHQKITDSRYYTVRWKTNIPANT-KYK 61
Query: 400 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 452
+V+GL+P Y+F + S T++ S ++
Sbjct: 62 NANATTLSYLVTGLKPNTLYEFSVMVTKGRR---SSTWSMTAHGTTFELSGPSS 112
Score = 56.8 bits (137), Expect = 7e-10
Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 12/113 (10%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSPYWVRASP 739
P PP Q S I W ++ + Y V + +
Sbjct: 8 PMMPPVGVQASILSHD----TIRITWADNSLPKHQKITDSRYYTVRWKTNIPANT-KYKN 62
Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSPAAA 791
+V+GL+P Y+F + S T++ S ++
Sbjct: 63 ANATTLSYLVTGLKPNTLYEFSVMVTKGRR---SSTWSMTAHGTTFELSGPSS 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 61.4 bits (149), Expect = 6e-10
Identities = 11/88 (12%), Positives = 23/88 (26%), Gaps = 1/88 (1%)
Query: 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
A + + + KV ++ S V+ + L + + D
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRN-GDLFFKKVQVED 312
Query: 520 EGEIKCTATNRAGHSITKARLRLEAPPT 547
G C A + L++
Sbjct: 313 GGVYTCYAMGETFNETLSVELKVYNFTL 340
Score = 56.0 bits (135), Expect = 3e-08
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 1/84 (1%)
Query: 563 GEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAH 622
G+ + ++ + E + S G +L + D G Y +
Sbjct: 261 GDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRN-GDLFFKKVQVEDGGVYTCY 319
Query: 623 GVNSLGEDVASFLVTVTDRPLPPG 646
+ + S + V + L
Sbjct: 320 AMGETFNETLSVELKVYNFTLHGH 343
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 57.8 bits (139), Expect = 2e-09
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEY---DGGSPVLGYLVEHRRTGSPYWVRASPH 401
P PP + + P + I+W PP G L Y + + + W
Sbjct: 103 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFA- 161
Query: 402 MVEDTELMVSGLEPGWRYQFRITAENVVGF-SEPGPLSEPLTVT 444
+ TE + L PG +Y ++ + G+ S S +
Sbjct: 162 -GQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAW---SPATFIQ 201
Score = 57.8 bits (139), Expect = 2e-09
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEY---DGGSPVLGYLVEHRRTGSPYWVRASPH 740
P PP + + P + I+W PP G L Y + + + W
Sbjct: 103 PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFA- 161
Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGF-SEPGPLSEPLTVT 783
+ TE + L PG +Y ++ + G+ S S +
Sbjct: 162 -GQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAW---SPATFIQ 201
Score = 42.8 bits (100), Expect = 3e-04
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
PPGKP++ S +++ FT W P DGG P Y + + R G ++
Sbjct: 3 PPGKPEIF-KCRSPNKETFTCWWRPGT-DGGLPT-NYSLTYHREGETLMHECPDYITGGP 59
Query: 407 E---LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 449
Y + A N +G S L +T Q P
Sbjct: 60 NSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDP 105
Score = 42.8 bits (100), Expect = 3e-04
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
PPGKP++ S +++ FT W P DGG P Y + + R G ++
Sbjct: 3 PPGKPEIF-KCRSPNKETFTCWWRPGT-DGGLPT-NYSLTYHREGETLMHECPDYITGGP 59
Query: 746 E---LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 788
Y + A N +G S L +T Q P
Sbjct: 60 NSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDP 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 2e-09
Identities = 91/583 (15%), Positives = 159/583 (27%), Gaps = 260/583 (44%)
Query: 295 KF----ADIIEQKKQAK-----KTADNQFENQAPLYVR-----------LEEAITGLNVG 334
KF + ++E K + +FEN Y+ L+E T L
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC---YLEGNDIHALAAKLLQENDTTLVKT 119
Query: 335 TDL---Y----CVIKKPPGPPGKPQLLPDSPSLDRDVFTI---------RWEPPE----Y 374
+L Y + K+P L + + I +E E Y
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE--ELRDLY 177
Query: 375 DGGSP-----------VLGYLVEHRRTGSPY---------WVRASPHMVEDTELMVS--- 411
L L+ W+ +P D + ++S
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-NPSNTPDKDYLLSIPI 236
Query: 412 -----GLEPGWRYQ---FRITAENVVGFSEPGPLSEPL---TVTYQRSPAAA-------- 452
G+ Q + +TA ++GF+ PG L L T Q A
Sbjct: 237 SCPLIGV-----IQLAHYVVTA-KLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 453 PSF-------IRAL-------HDT---TALEDEKVEFTVQV-EGIPTPKVSWYKDGFEIF 494
SF I L ++ T+L +E +++ EG+P+P +S
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS--------- 340
Query: 495 SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRL---- 550
+++ + + + K L A + +
Sbjct: 341 -------ISNLTQEQVQDY---------------------VNKTNSHLPAGKQVEISLVN 372
Query: 551 -PKQYEDGLLFEMGEIIKLKVSMAGMPPPTA-----RWLHNGEPLTSGGRYEITHTDRYL 604
K V ++G PP + L + + + I ++R
Sbjct: 373 GAKNL---------------V-VSG--PPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-- 412
Query: 605 NLRISDARRADRGEYQAHGVNSLGEDVASFL-VTVTDRP-----LPPGKAKVVMTLGKSV 658
L+ S FL V P L P + L K+
Sbjct: 413 KLKFS----------------------NRFLPVAS---PFHSHLLVPASDLINKDLVKN- 446
Query: 659 TLSWSEPEDDGGCKIGNYIVEYFRPPGPP------GK-PQLLPDS--PSLDRDVFT--IR 707
+S++ +D +I P G ++L S + + ++
Sbjct: 447 NVSFN-AKD---IQI-------------PVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 708 WE--------------PPEYDGGSPVLGYLVEHRRTGSPYWVR 736
WE P GG+ LG L + G+ VR
Sbjct: 490 WETTTQFKATHILDFGP----GGASGLGVLTHRNKDGT--GVR 526
Score = 50.8 bits (121), Expect = 3e-06
Identities = 64/425 (15%), Positives = 109/425 (25%), Gaps = 172/425 (40%)
Query: 573 AGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVA 632
+P PT + + EP T E+ ++L S + G++ L E
Sbjct: 39 KILPEPTEGFAADDEPTTPA---ELV--GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 633 SFLVTVTDRPLPPGKAKVVMTLGK---SVTLSWSEPEDDGGCKIGNYIVEYF-------R 682
+L G ++ + D K I Y R
Sbjct: 94 CYL------------------EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTI---------RWEPPE----YDGGSP----------- 718
P L + + I +E E Y
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE--ELRDLYQTYHVLVGDLIKFSAE 193
Query: 719 VLGYLVEHRRTGSPY---------WVRASPHMVEDTELMVS--------GLEPGWRYQ-- 759
L L+ W+ +P D + ++S G+ Q
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLE-NPSNTPDKDYLLSIPISCPLIGV-----IQLA 247
Query: 760 -FRITAENVVGFSEPGPLSEPL---TVTYQRSPAAA--------PSFIRALHDTTALEDE 807
+ +TA ++GF+ PG L L T Q A SF ++ A+
Sbjct: 248 HYVVTA-KLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRK--AIT-- 301
Query: 808 KPRNTNNCDY------ESKRTFQST------------------SPMLAAFMLLMLFTFIE 843
+ +T SPML+
Sbjct: 302 ---------VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS------------ 340
Query: 844 TISSFRDKYVDNEDDYDIVETNEHTGTGAPSDNE------NESDYF-----PEKTIDESV 892
IS+ + V + + +TN H P+ + N + P +S+
Sbjct: 341 -ISNLTQEQVQD----YVNKTNSH----LPAGKQVEISLVNGAKNLVVSGPP-----QSL 386
Query: 893 YGYDT 897
YG +
Sbjct: 387 YGLNL 391
Score = 42.3 bits (99), Expect = 0.001
Identities = 85/493 (17%), Positives = 142/493 (28%), Gaps = 174/493 (35%)
Query: 53 LLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQA----RQQYLALK--H---ATLKQREEF 103
L+ + +L SS V+ + + Q + YL H A L Q +
Sbjct: 60 LVGK-----FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 104 LKLKHATIAIQTLYKAKLLMKRD----------RAA-------YT-------------EL 133
+K + I+ A+++ KR RA EL
Sbjct: 115 TLVKTKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 134 KQACVSVQQRWRANLTMRKQRAHFLLMKQKASV------------IQQWYRNTKLMRLEA 181
+ + Q + + + + L + + I +W N +
Sbjct: 174 R----DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS-NTPDK 228
Query: 182 SYLHELKAATITI--------Q-RRYR--ANVAMRTQRERYVALRTATITIQTRFRAYLI 230
YL +I I Q Y A + T E L+ AT Q A I
Sbjct: 229 DYL-----LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 231 AKNQRDE--YAELKQARRFRFKLNLRKYER--------------------------VIEL 262
A+ E + +++A F + +R YE I
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 263 LKLKREQERQEKYRHQC----AVKI---------------QSLWKM-YRVRKKFADI-IE 301
L ++ Q+ K V+I QSL+ + +RK A ++
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 302 QKK----QAKKTADNQF-ENQAPL---YVRLEEAITGLNVGTDLYCVIKKPPGP----P- 348
Q + + K N+F +P L A +N DL P
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHL--LVPASDLIN--KDLVKNNVSFNAKDIQIPV 459
Query: 349 -----GK-PQLLPDS--PSLDRDVFT--IRWE--------------PPEYDGGSPVLGYL 384
G ++L S + + ++WE P GG+ LG L
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP----GGASGLGVL 515
Query: 385 VEHRRTGSPYWVR 397
+ G+ VR
Sbjct: 516 THRNKDGT--GVR 526
Score = 42.3 bits (99), Expect = 0.001
Identities = 33/208 (15%), Positives = 65/208 (31%), Gaps = 64/208 (30%)
Query: 395 WVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY--QRSPAAA 452
W RA H + Y F I ++V P++ LT+ + ++
Sbjct: 1646 WNRADNHFKD-------------TYGFSIL--DIV---INNPVN--LTIHFGGEKGKRIR 1685
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLII 512
++ + +T K E + + ++ + + + T T
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA-------TQF---T--- 1732
Query: 513 HQAALM-----------DEGEIKCTATNRAGHSI-------TKAR-LRLEAPPTIRLPKQ 553
Q AL +G I AT AGHS+ + A + +E+ + +
Sbjct: 1733 -QPALTLMEKAAFEDLKSKGLIPADATF-AGHSLGEYAALASLADVMSIES--LVEVVFY 1788
Query: 554 YEDGLLF----EMGEIIKLKVSMAGMPP 577
G+ E+ + M + P
Sbjct: 1789 --RGMTMQVAVPRDELGRSNYGMIAINP 1814
Score = 33.5 bits (76), Expect = 0.50
Identities = 40/274 (14%), Positives = 75/274 (27%), Gaps = 125/274 (45%)
Query: 779 PLTVTY---QRS---PAAAPSFIRA--LHDTTALEDEKPRNTNNCDYESKRTFQSTSPML 830
PLT+++ + P A SF A L + +P D E + + ++
Sbjct: 8 PLTLSHGSLEHVLLVPTA--SFFIASQLQEQFNKILPEPTEGFAADDE----PTTPAELV 61
Query: 831 AAFMLLMLFTFIET-----------------ISSFRDKYVDNED------------DYDI 861
F+ ++ + ++ F + Y++ D D +
Sbjct: 62 GKFL-----GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 862 VETNE--------HTGTGAPSDNENES------------------------DYFPE-KTI 888
V+T E P D ++ S DYF E + +
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 889 DESVYGYDTIVYGYDSDDL-DRHYPTLDEEEEEEDRESLVKDRESSVKGKEEEAKVIKDD 947
Y T Y DL TL L++ + +
Sbjct: 177 ------YQT--YHVLVGDLIKFSAETL---------SELIRTTLDA------------EK 207
Query: 948 EYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPD 981
+ + L +I ++ P + PD
Sbjct: 208 VFTQGL--------------NILEWLENPSNTPD 227
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL
conjugation, Ca2+ regulation, myosin, calcium, IQ
motif, acetylation; 2.5A {Mus musculus}
Length = 58
Score = 52.9 bits (128), Expect = 3e-09
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 38 IRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALK 93
+R+ I IQK RG+L R+ YL M+ +A+ +Q + R QAR L+
Sbjct: 4 LRAACIRIQKTIRGWL----LRKRYLCMQRAAITVQRYVR----GYQARCYAKFLR 51
Score = 50.6 bits (122), Expect = 2e-08
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 187 LKAATITIQRRYRANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQAR 245
L+AA I IQ+ R R+RY+ ++ A IT+Q R Y R L++ +
Sbjct: 4 LRAACIRIQKTIR----GWLLRKRYLCMQRAAITVQRYVRGYQ----ARCYAKFLRRTK 54
Score = 47.2 bits (113), Expect = 3e-07
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 11 LRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMK 66
LRA I IQ R L +R + ++ I +Q+Y RGY R ++
Sbjct: 4 LRAACIRIQKTIRGWLLRKR----YLCMQRAAITVQRYVRGYQ----ARCYAKFLR 51
Score = 41.4 bits (98), Expect = 4e-05
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 133 LKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRNTKLMRLEASYLHELKAAT 191
L+ AC+ +Q+ R R +L M++ A +Q++ R R A +L KAAT
Sbjct: 4 LRAACIRIQKTIR----GWLLRKRYLCMQRAAITVQRYVRG-YQARCYAKFLRRTKAAT 57
Score = 37.9 bits (89), Expect = 7e-04
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 105 KLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKA 164
KL+ A I IQ + LL KR Y +++A ++VQ+ R R + +++
Sbjct: 3 KLRAACIRIQKTIRGWLLRKR----YLCMQRAAITVQRYVRGYQ----ARCYAKFLRRTK 54
Query: 165 SVI 167
+
Sbjct: 55 AAT 57
Score = 37.5 bits (88), Expect = 8e-04
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 24/73 (32%)
Query: 65 MKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKL--- 121
++++ ++IQ+ R R+ +L ++ A I +Q +
Sbjct: 4 LRAACIRIQKTIR------------------GWLLRKRYLCMQRAAITVQRYVRGYQARC 45
Query: 122 ---LMKRDRAAYT 131
++R +AA T
Sbjct: 46 YAKFLRRTKAATT 58
Score = 37.2 bits (87), Expect = 0.001
Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 39/90 (43%)
Query: 214 LRTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQERQE 273
LR A I IQ R +L R Y +++A
Sbjct: 4 LRAACIRIQKTIRGWL----LRKRYLCMQRA----------------------------- 30
Query: 274 KYRHQCAVKIQSLWKMYRVRKKFADIIEQK 303
A+ +Q + Y+ R + K
Sbjct: 31 ------AITVQRYVRGYQARCYAKFLRRTK 54
Score = 36.8 bits (86), Expect = 0.002
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 160 MKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRT--A 217
++ IQ+ R L+R YL ++ A IT+QR R A R LR A
Sbjct: 4 LRAACIRIQKTIR-GWLLRKR--YL-CMQRAAITVQRYVRGYQA----RCYAKFLRRTKA 55
Query: 218 TIT 220
T
Sbjct: 56 ATT 58
Score = 32.5 bits (75), Expect = 0.048
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 3 QCRSDYLNLRAKTILIQTLWRSKLAMRR 30
R YL ++ I +Q R A
Sbjct: 19 LLRKRYLCMQRAAITVQRYVRGYQARCY 46
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 54.4 bits (131), Expect = 4e-09
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 6/70 (8%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
+ W P GYL+ G P T + GL P Y R+
Sbjct: 24 ALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLP--GGITSHQLLGLFPSTSYNARLQ 77
Query: 425 AENVVGFSEP 434
A P
Sbjct: 78 AMWGQSLLPP 87
Score = 54.4 bits (131), Expect = 4e-09
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 6/70 (8%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
+ W P GYL+ G P T + GL P Y R+
Sbjct: 24 ALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLP--GGITSHQLLGLFPSTSYNARLQ 77
Query: 764 AENVVGFSEP 773
A P
Sbjct: 78 AMWGQSLLPP 87
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 54.4 bits (131), Expect = 5e-09
Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 14/116 (12%)
Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
P P L + + W+PP+ +PV Y ++ G+P +P
Sbjct: 7 GPDGPTQLRALNLTEGFA-VLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETP--GSAV 59
Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT 462
+ + L Y + + P + AP + A T
Sbjct: 60 DYPLHDLVLHTNYTATVRGLRGPNLTSP-------ASITFTTGLEAPRDLEAKEVT 108
Score = 54.4 bits (131), Expect = 5e-09
Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 14/116 (12%)
Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
P P L + + W+PP+ +PV Y ++ G+P +P
Sbjct: 7 GPDGPTQLRALNLTEGFA-VLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETP--GSAV 59
Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDT 801
+ + L Y + + P + AP + A T
Sbjct: 60 DYPLHDLVLHTNYTATVRGLRGPNLTSP-------ASITFTTGLEAPRDLEAKEVT 108
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 53.7 bits (128), Expect = 6e-09
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P G G ++ + I+W P+ S + Y++ R S + +
Sbjct: 2 PLGSSGPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPG 58
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSE 433
+ GL+PG Y+ ++ + G E
Sbjct: 59 HLNSYTIKGLKPGVVYEGQLISIQQYGHQE 88
Score = 53.7 bits (128), Expect = 6e-09
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P G G ++ + I+W P+ S + Y++ R S + +
Sbjct: 2 PLGSSGPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPG 58
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSE 772
+ GL+PG Y+ ++ + G E
Sbjct: 59 HLNSYTIKGLKPGVVYEGQLISIQQYGHQE 88
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 58.6 bits (142), Expect = 7e-09
Identities = 20/82 (24%), Positives = 31/82 (37%)
Query: 460 HDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMD 519
E V+F + +G P P + W + S++ +T TL + A + D
Sbjct: 393 QQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQD 452
Query: 520 EGEIKCTATNRAGHSITKARLR 541
G C A N G+ A L
Sbjct: 453 NGTYLCIAANAGGNDSMPAHLH 474
Score = 49.7 bits (119), Expect = 4e-06
Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 9/103 (8%)
Query: 540 LRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLT--SGGRYE 596
Q G ++ G PPP WL ++ S GR
Sbjct: 380 FTCRRARIRDRKAQQVFVDE---GHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLT 436
Query: 597 ITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVT 639
+ D L + A+ D G Y N+ G D + V
Sbjct: 437 V-FPDGTLE--VRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 54.0 bits (130), Expect = 7e-09
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD---GGSPVLGYLVEHRRTGSP---YWVR 397
P PG ++ + + + + W+P G + GY + + +T S
Sbjct: 14 PMVAPGNVRVNVVNST----LAEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRH 67
Query: 398 ASPHMVE----DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSP 449
++ T M+ GLEP Y + N G GP S T + S
Sbjct: 68 IEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKG---EGPASPDRVFNTPEGSG 121
Score = 54.0 bits (130), Expect = 7e-09
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD---GGSPVLGYLVEHRRTGSP---YWVR 736
P PG ++ + + + + W+P G + GY + + +T S
Sbjct: 14 PMVAPGNVRVNVVNST----LAEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRH 67
Query: 737 ASPHMVE----DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTV-TYQRSP 788
++ T M+ GLEP Y + N G GP S T + S
Sbjct: 68 IEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKG---EGPASPDRVFNTPEGSG 121
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 57.4 bits (139), Expect = 1e-08
Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 452 APSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS--SRRQRIVTDNDIST 509
AP + A D E E + P V W + S SR RI ND T
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLND-GT 408
Query: 510 LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQY 554
L L D G C TN AG+S A L + T +
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGT-HHHHHH 452
Score = 48.6 bits (116), Expect = 9e-06
Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 19/118 (16%)
Query: 534 SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKL--KVSMAGMPPPTARWLH-NGEPLT 590
+ +A + AP + P+ L G + +L + P + +WL NG L+
Sbjct: 342 EVDQASFQCSAPFIMDAPRD----LNISEGRMAELKCRTP----PMSSVKWLLPNGTVLS 393
Query: 591 S---GGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
R + + L S +D G Y N G AS + V+
Sbjct: 394 HASRHPRISVLNDG---TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS--TAGT 446
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 53.1 bits (127), Expect = 2e-08
Identities = 11/109 (10%), Positives = 29/109 (26%), Gaps = 10/109 (9%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS---- 508
S T E + + + W ++ ++
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 509 -----TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPK 552
++ + L DEG KC + + + + ++ + A +
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDSVST-KEVKVIVLATMKGEFCR 109
Score = 43.1 bits (101), Expect = 5e-05
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 563 GEIIKLKVSMAGMPPPTARWLH--------NGEPLTSGGRYEITH-TDRYLNLRISDARR 613
G+ + LK + + +WL N P+ +Y++ H + L++ + +
Sbjct: 16 GQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTL 75
Query: 614 ADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
D G Y+ S V V
Sbjct: 76 QDEGVYKC-LHYSDSVSTKEVKVIVLATMKGE 106
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 57.1 bits (138), Expect = 2e-08
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFS--SRRQRIVTDNDISTL 510
P + D E E + VSW + + + + RI +D TL
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSD-GTL 399
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLR-LEAPP 546
+ D G C +N G++ A L
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHH 436
Score = 52.8 bits (127), Expect = 4e-07
Identities = 25/116 (21%), Positives = 37/116 (31%), Gaps = 12/116 (10%)
Query: 534 SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLH-NGEPLTSG 592
+ + AP + P L G +LK A + W+ NG +T G
Sbjct: 331 ELDQNYFTCYAPVIVEPPAD----LNVTEGMAAELKCR-ASTSLTSVSWITPNGTVMTHG 385
Query: 593 ---GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
R + L ++ D G Y NS+G AS + VT
Sbjct: 386 AYKVRIAVLSDG---TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 53.8 bits (129), Expect = 2e-08
Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 32/190 (16%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEI----------FSSRRQRIVTDNDISTL 510
+ V F V +P +V W K ++ FSS + R+ D +L
Sbjct: 4 QIYGVVYGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62
Query: 511 IIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKV 570
I+ DE E + + N K L + + P ++ L
Sbjct: 63 TIYNLTSSDEDEYEMESPNITDTM--KFFLYVLEMVSK--PM------IYWECSNATLTC 112
Query: 571 SMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGED 630
+ + E L S + +S R ++ VN + ++
Sbjct: 113 EVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQE 161
Query: 631 VASFLVTVTD 640
+V +
Sbjct: 162 SEMEVVNCPE 171
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 54.7 bits (131), Expect = 3e-08
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 4/116 (3%)
Query: 332 NVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTG 391
+ P L + + +RW PP + + Y V+
Sbjct: 106 GAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQ 165
Query: 392 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE---PLTVT 444
V+ + TE ++S L RY F + A + S G SE P+++
Sbjct: 166 GAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA-RMAEPSFGGFWSEWSEPVSLL 220
Score = 54.3 bits (130), Expect = 3e-08
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 4/107 (3%)
Query: 680 YFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP 739
+ P L + + +RW PP + + Y V+ V+
Sbjct: 115 HINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVE 174
Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE---PLTVT 783
+ TE ++S L RY F + A + S G SE P+++
Sbjct: 175 ILEGRTECVLSNLRGRTRYTFAVRA-RMAEPSFGGFWSEWSEPVSLL 220
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 54.4 bits (130), Expect = 3e-08
Identities = 16/111 (14%), Positives = 25/111 (22%), Gaps = 2/111 (1%)
Query: 675 NYIVEYFRPPGPPGKPQL--LPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSP 732
PP L PD S + W+P + L +
Sbjct: 100 CLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGA 159
Query: 733 YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
W + + GL Y ++ P S L +
Sbjct: 160 NWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 210
Score = 53.7 bits (128), Expect = 6e-08
Identities = 16/102 (15%), Positives = 25/102 (24%), Gaps = 2/102 (1%)
Query: 345 PGPPGKPQL--LPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
PP L PD S + W+P + L + W
Sbjct: 109 LEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLP 168
Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
+ + GL Y ++ P S L +
Sbjct: 169 SSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 210
Score = 42.5 bits (99), Expect = 3e-04
Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 11/131 (8%)
Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
PP P L L + +WEP + P L R + +
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGP-ETHLPTSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 746 E------LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 799
+ + L + AEN++G SE S L + P ++AL
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSE----SPKLCLDPMDVVKLEPPMLQALD 118
Query: 800 DTTALEDEKPR 810
+ +P
Sbjct: 119 IGPDVVSHQPG 129
Score = 41.7 bits (97), Expect = 5e-04
Identities = 21/147 (14%), Positives = 39/147 (26%), Gaps = 8/147 (5%)
Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
PP P L L + +WEP + P L R + +
Sbjct: 4 PPASPSNLSCLMHLTTNSLVCQWEPGP-ETHLPTSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 407 E------LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 460
+ + L + AEN++G SE L + P + +
Sbjct: 63 KRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQA-LDIGP 121
Query: 461 DTTALEDEKVEFTVQVEGIPTPKVSWY 487
D + + + + +
Sbjct: 122 DVVSHQPGCLWLSWKPWKPSEYMEQEC 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 5e-08
Identities = 70/514 (13%), Positives = 153/514 (29%), Gaps = 136/514 (26%)
Query: 38 IRSKTIVIQKYFRGY-LLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHAT 96
S + + F+ + L ++ ++ +Q+ + +R + +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDPNWTSRSDH----SSN 222
Query: 97 LKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRA-NLTMRKQRA 155
+K R ++ + + Y+ LL+ + V + W A NL+ +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLN-----------VQNAKAWNAFNLSCK---- 267
Query: 156 HFLLMKQKASVIQQW-YRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVAL 214
LL + V T + L+ + ++ +Y + R Q L
Sbjct: 268 -ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLPREVL 323
Query: 215 RTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIEL-LKLKREQERQE 273
T + +IA++ RD A ++ +N K +IE L + E ++
Sbjct: 324 TTNPRRLS------IIAESIRDGLATWD---NWK-HVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 274 KYRHQCA-----VKI-----QSLW--KMYRVRKKFADIIEQKKQAKKTADNQFENQAPLY 321
+ + + I +W + + + + +K E+ +
Sbjct: 374 MFD-RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK---QPKESTISIP 429
Query: 322 VRLEEAITGLNVGTDLYCVIKKPPGPPGKPQL---LPDSPSLDRDVFTIRWEPPEYDGGS 378
+Y +K + L + D ++ + + PP D
Sbjct: 430 --------------SIYLELKVK--LENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--- 470
Query: 379 PVLGYLVEHRRTGSPYWVRASPHM--VEDTELMVSGLEPGWRYQFR-----ITAENVVGF 431
Y H + H+ +E E M L FR I ++ +
Sbjct: 471 ---QYFYSH----IGH------HLKNIEHPERM--TLFRMVFLDFRFLEQKIRHDS-TAW 514
Query: 432 SEPGPLSEPLTV--TYQRSPAAAPSFIRALHDT-TALEDEKVEFTVQVEGIPTPKVSWYK 488
+ G + L Y+ +I L + ++F ++E
Sbjct: 515 NASGSILNTLQQLKFYKP-------YICDNDPKYERLVNAILDFLPKIEEN--------- 558
Query: 489 DGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGE 522
+ S+ ++ + ALM E E
Sbjct: 559 ----LICSKYTDLL-----------RIALMAEDE 577
Score = 47.2 bits (111), Expect = 4e-05
Identities = 53/365 (14%), Positives = 95/365 (26%), Gaps = 123/365 (33%)
Query: 837 MLFTFIETISSFRDKYVDNEDDYDIVE------TNEHTGTGAPSDNENESDYF------- 883
+ + + +S F D +VDN D D+ + + E S +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 884 -PEKTIDESVYGYDTIVYGYDSDDLDRHY--PTLDEEEEEEDRESLVKD----------R 930
E+ + + V I Y + + P++ E R+ L D R
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 931 ESSVK-----------------------GKEE-EAKVIKDDE---------YYENLGDVL 957
GK V + ++ NL +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 958 TKKYSLPVNSDIQIKIDKPDDE-PDYVIKGKYEVDNEMLLKRSKLK-PQY---------- 1005
+ + L + + +ID D+ K + + R LK Y
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 1006 -SSEMSEA-------------SNITDDEDE--------EDEEDSFDFDE---LF------ 1034
+++ A +TD + + DE L
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 1035 --EDNPEEEYD----------EDDRDQPINFARNRHNKYIEDDQEEIYHPKLMTMRSSQE 1082
+D P E E RD A + K++ D+ + SS
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGL---ATWDNWKHVNCDK------LTTIIESSLN 364
Query: 1083 DLDEA 1087
L+ A
Sbjct: 365 VLEPA 369
Score = 42.5 bits (99), Expect = 0.001
Identities = 79/610 (12%), Positives = 172/610 (28%), Gaps = 166/610 (27%)
Query: 453 PSFIRALHDTTALED--------EKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTD 504
+F+ D ++D E+++ + + F S+++ +V
Sbjct: 27 DAFVDNF-DCKDVQDMPKSILSKEEIDHIIMS---KDAVSGTLRL-FWTLLSKQEEMVQK 81
Query: 505 NDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE------APPTIRLPKQYE--- 555
L I+ LM + + + + R RL A + + Y
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 556 DGLLFEMGEIIKLKVS-------MAG------------------MPPPTARWLHNGEPLT 590
LL +L+ + + G WL+ +
Sbjct: 142 QALL-------ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 591 SGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKV 650
E+ + + R+D ++S+ ++ L +P +
Sbjct: 195 PETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYE--NCLL 248
Query: 651 VMTLGKSVTLSWSEPED----DGGCKI----GNYIVEYFRPPGPPGKPQLLPDSPSLDRD 702
V+ +V + + + CKI V F L S +L D
Sbjct: 249 VL---LNV---QN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 703 ----VFTIRW-------EPPEYDGGSP----VLGYLVEHRRTGSPYWVRASPHMVEDT-E 746
+ +++ P E +P ++ + W + + E
Sbjct: 302 EVKSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 747 LMVSGLEPG---WRYQ----FR----ITAENVVGFSEPGPLSEPLTVT---YQRSPAA-- 790
++ LEP + F I + S+ + V ++ S
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 791 APSFIRALHDTTALEDEKPRNTNNCD--------YESKRTFQSTSPMLAAFMLLML---- 838
++ + K + N Y +TF S + L
Sbjct: 421 PKESTISIPSI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDD-----LIPPYLDQYF 473
Query: 839 FTFI----------ETISSFRDKYVDNEDDYDIVETN-EHTGT--GAPSDNENE-SD--- 881
++ I E ++ FR ++ D+ +E H T A N
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFL----DFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 882 YFPEKTIDESVYGYDTIVYGYDSDDLDRHYPTLDEEEEEEDRESLVKDRESSVKGKEEEA 941
Y + I ++ Y+ +V + + P ++ E+L+ + + + A
Sbjct: 530 Y--KPYICDNDPKYERLV-----NAILDFLPKIE--------ENLICSKYTDLL---RIA 571
Query: 942 KVIKDDEYYE 951
+ +D+ +E
Sbjct: 572 LMAEDEAIFE 581
Score = 34.4 bits (78), Expect = 0.28
Identities = 32/214 (14%), Positives = 58/214 (27%), Gaps = 55/214 (25%)
Query: 923 RESLVKDRESSVKGK----EEEAKVIKDDEYYENLGDVL-TKKYSLP---------VNSD 968
R V D S+ + + + DE L L + LP S
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 969 IQIKIDKPDDEPDYVIKGKYEVDN-EMLLKRS--KLKPQYSSEM-------SEASNIT-- 1016
I I D D +++ S L+P +M +++I
Sbjct: 333 IAESIRDGLATWDNWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 1017 ------DDEDEEDEEDSFDFDE----LFEDNPEEEYDEDDRDQPINFARNRHNKYIE--- 1063
D + D + + + E I + Y+E
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-------I------PSIYLELKV 437
Query: 1064 -DDQEEIYHPKLMTMRSSQEDLDEAPPVPEHLDD 1096
+ E H ++ + + D +P +LD
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 53.8 bits (128), Expect = 6e-08
Identities = 37/220 (16%), Positives = 69/220 (31%), Gaps = 28/220 (12%)
Query: 579 TARWLHNGEPLTSGGRYEITHTDRY--LNLRISDARRADRGEYQAHGVNSLGEDVASFLV 636
+ L + + T Y +A D A + V +
Sbjct: 29 NIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIED--GKVRVLVS 86
Query: 637 TVTDRPLPPGKAKVVMTL-------GKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGK 689
++T PLP + + L G +++++ S D G E
Sbjct: 87 SLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTS 146
Query: 690 PQLLPDSP------SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
P+++ + +++ T+ W PE G + GY++ + G V +
Sbjct: 147 PEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGYILY--KDGK--KVAEIG--KD 198
Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
+T L Y F+I A+ G E LT+
Sbjct: 199 ETSYTFKKLNRHTIYNFKIAAKYSNGEVSS---KESLTLR 235
Score = 52.2 bits (124), Expect = 2e-07
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 12/116 (10%)
Query: 329 TGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHR 388
T P + + +++ T+ W PE G + GY++
Sbjct: 132 IAGTEKTVNIIEGTSPEIVVNPVRDF-KASEINKKNVTVTWTEPETTEG--LEGYILY-- 186
Query: 389 RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
+ G V ++T L Y F+I A+ G E LT+
Sbjct: 187 KDGK--KVAEIG--KDETSYTFKKLNRHTIYNFKIAAKYSNGEVSS---KESLTLR 235
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 52.9 bits (126), Expect = 1e-07
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 6/112 (5%)
Query: 336 DLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGS 392
+ +++ P LL S + +RWE P + G VL Y ++++
Sbjct: 124 SVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNE 183
Query: 393 PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
W + T + V L+ Y+ R+ + G SE L VT
Sbjct: 184 TKW--KMMDPILTTSVPVYSLKVDKEYEVRVRS-KQRNSGNYGEFSEVLYVT 232
Score = 51.7 bits (123), Expect = 4e-07
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 678 VEYFRPPGPPGKPQ--LLPDSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSP 732
V+ P PP LL S + +RWE P + G VL Y ++++
Sbjct: 125 VDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNET 184
Query: 733 YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
W + T + V L+ Y+ R+ + G SE L VT
Sbjct: 185 KW--KMMDPILTTSVPVYSLKVDKEYEVRVRS-KQRNSGNYGEFSEVLYVT 232
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 53.3 bits (127), Expect = 3e-07
Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 11/121 (9%)
Query: 678 VEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRA 737
++ P PP +S ++W P + Y +E R +
Sbjct: 232 LQNIVKPLPPVYLTFTRESS----CEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTA- 286
Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE---PLTVTYQRSPAAAPSF 794
VE+ + + F + ++ + S+ G SE +
Sbjct: 287 ---TVENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSKKTLLR 343
Query: 795 I 795
Sbjct: 344 F 344
Score = 52.5 bits (125), Expect = 4e-07
Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 11/116 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P PP +S ++W P + Y +E R + V
Sbjct: 237 KPLPPVYLTFTRESS----CEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTA----TV 288
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE---PLTVTYQRSPAAAPSFI 456
E+ + + F + ++ + S+ G SE +
Sbjct: 289 ENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSKKTLLRF 344
Score = 40.2 bits (93), Expect = 0.003
Identities = 19/143 (13%), Positives = 35/143 (24%), Gaps = 11/143 (7%)
Query: 320 LYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD--GG 377
LY L G +D + PP ++ ++W+PP
Sbjct: 11 LYTFLISTTFGCTSSSDT----EIKVNPPQDFEI---VDPGYLGYLYLQWQPPLSLDHFK 63
Query: 378 SPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL 437
+ Y +++R GS W L G
Sbjct: 64 ECTVEYELKYRNIGSETWKTIIT--KNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQS 121
Query: 438 SEPLTVTYQRSPAAAPSFIRALH 460
S T + + ++ +
Sbjct: 122 SWAETTYWISPQGIPETXVQDMD 144
Score = 38.2 bits (88), Expect = 0.012
Identities = 14/119 (11%), Positives = 28/119 (23%), Gaps = 7/119 (5%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD--GGSPVLGYLVEHRRTGSPYWVRASPH 740
PP ++ ++W+PP + Y +++R GS W
Sbjct: 31 KVNPPQDFEI---VDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTIIT- 86
Query: 741 MVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 799
L G S T + + ++ +
Sbjct: 87 -KNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMD 144
Score = 33.2 bits (75), Expect = 0.42
Identities = 7/110 (6%), Positives = 25/110 (22%), Gaps = 10/110 (9%)
Query: 359 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTE-----LMVSGL 413
+ W+P Y + + G + ++ ++ D +
Sbjct: 147 YYNWQYLLCSWKPGI-GVLLDT-NYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEA 204
Query: 414 EPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 463
+ + + S P ++ +++
Sbjct: 205 SDYKDFYICVNGSSENKPIRS---SYFTFQLQNIVKPLPPVYLTFTRESS 251
Score = 33.2 bits (75), Expect = 0.42
Identities = 7/110 (6%), Positives = 25/110 (22%), Gaps = 10/110 (9%)
Query: 698 SLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTE-----LMVSGL 752
+ W+P Y + + G + ++ ++ D +
Sbjct: 147 YYNWQYLLCSWKPGI-GVLLDT-NYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEA 204
Query: 753 EPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
+ + + S P ++ +++
Sbjct: 205 SDYKDFYICVNGSSENKPIRS---SYFTFQLQNIVKPLPPVYLTFTRESS 251
Score = 29.4 bits (65), Expect = 8.1
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 641 RPLPPGKAKVVMTLGKS-VTLSWSEPEDD---GGCKIGNYIVEYFRP 683
+ PP ++V + L W P C + Y ++Y
Sbjct: 31 KVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVE-YELKYRNI 76
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 51.1 bits (122), Expect = 3e-07
Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 30/176 (17%)
Query: 463 TALEDEKVEFTVQV-EGIPTPKVSWYKDG---------------FEIFSSRRQRIVTDND 506
+ E V ++ G ++W + + + ++ + +
Sbjct: 9 NGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ 68
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR-LEAPPTIRLPKQYEDGLLFEMGEI 565
+L + + D G + + + ++ LR L I++ L M
Sbjct: 69 SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQV--TNHSQLFQNMTCE 126
Query: 566 IKLKVSMAGM-PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ 620
+ L S+ + RW G L+S ++ D R + +Y
Sbjct: 127 LHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSW----------DPRISSEQDYT 172
Score = 39.6 bits (92), Expect = 0.002
Identities = 30/197 (15%), Positives = 49/197 (24%), Gaps = 38/197 (19%)
Query: 349 GKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWV-----RASPHMV 403
G+ LP V I W L ++V H V +
Sbjct: 13 GESVTLPLEFPAGEKVNFITWL-----FNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT 67
Query: 404 EDTELMVSGLEP---GWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS--FIRA 458
+ L +S L+ G Y+ +I+ + +Y +
Sbjct: 68 QSYSLQLSNLKMEDTGS-YRAQISTKT-----------SAKLSSYTLRILRQLRNIQVTN 115
Query: 459 LHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAAL 517
++ T VE W G + S + D IS
Sbjct: 116 HSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRIS--------- 166
Query: 518 MDEGEIKCTATNRAGHS 534
E + C A N +
Sbjct: 167 -SEQDYTCIAENAVSNL 182
Score = 33.4 bits (76), Expect = 0.25
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 45/128 (35%)
Query: 606 LRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP-----------GKAKVVMTL 654
L++S+ + D G Y+A ++S+ + + + ++ +T
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131
Query: 655 -----GKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWE 709
+V+ W L P+L T+ W+
Sbjct: 132 SVEDADDNVSFRWEA------------------------LGNTLSSQPNL-----TVSWD 162
Query: 710 PPEYDGGS 717
P
Sbjct: 163 PRISSEQD 170
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 53.4 bits (127), Expect = 3e-07
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 9/104 (8%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P ++ + + V T W P L +E + S VR +
Sbjct: 386 APHDPTSLKVKDINST----VVTFSWYLPGNFTKIN-LLCQIEICKANSKKEVRNATIRG 440
Query: 404 ED---TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
+ + V L P Y FR+ + F + S+
Sbjct: 441 AEDSTYHVAVDKLNPYTAYTFRVRC-SSKTFWKWSRWSDEKRHL 483
Score = 53.4 bits (127), Expect = 3e-07
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 9/104 (8%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P ++ + + V T W P L +E + S VR +
Sbjct: 386 APHDPTSLKVKDINST----VVTFSWYLPGNFTKIN-LLCQIEICKANSKKEVRNATIRG 440
Query: 743 ED---TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
+ + V L P Y FR+ + F + S+
Sbjct: 441 AEDSTYHVAVDKLNPYTAYTFRVRC-SSKTFWKWSRWSDEKRHL 483
Score = 49.2 bits (116), Expect = 6e-06
Identities = 58/441 (13%), Positives = 115/441 (26%), Gaps = 65/441 (14%)
Query: 361 DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQ 420
+ V+ W P V ++ R S H +E T + + L PG ++
Sbjct: 16 NMRVWDCTWPAPLGVSPGTVKDICIKDRF--------HSCHPLETTNVKIPALSPG-DHE 66
Query: 421 FRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIP 480
I N ++ + P L + + G
Sbjct: 67 VTINYLNGFQSKF---------TLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRGSA 117
Query: 481 TPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARL 540
P S ++ + R V ++T++ + + A HS+ R
Sbjct: 118 LPHPSNATWEIKVLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSV-SIRW 176
Query: 541 RLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSGGRYEITHT 600
+++P + + L + I + ++ P + + G +T
Sbjct: 177 HIDSPHFSGYKEWSDWSPLKNISWIRNTETNVF----PQDKVVLAGSNMTICCMSPTKVL 232
Query: 601 DRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTL 660
+ + H +N + + +
Sbjct: 233 SGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNII----------------------- 269
Query: 661 SWSEPEDDGGCKIGNYIVEYFRPPG-PPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GS 717
+ + G PP PQ L + D W P G G
Sbjct: 270 ----------FITDDDVYGTVVFAGYPPDVPQKL-SCETHDLKEIICSWNPGRITGLVGP 318
Query: 718 PVLGYLVEHR-RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL 776
Y + S + R E L V + F +T N +G ++
Sbjct: 319 RNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ---- 374
Query: 777 SEPLTVTYQRSPAAAPSFIRA 797
S + +R P+ ++
Sbjct: 375 SAVVINVTERVAPHDPTSLKV 395
Score = 47.6 bits (112), Expect = 2e-05
Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 8/131 (6%)
Query: 331 LNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDG--GSPVLGYLVEHR 388
D+Y + PP PQ L + D W P G G Y +
Sbjct: 270 FITDDDVYGTVVFAGYPPDVPQKL-SCETHDLKEIICSWNPGRITGLVGPRNTEYTLFES 328
Query: 389 -RTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR 447
S + R E L V + F +T N +G ++ S + +R
Sbjct: 329 ISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ----SAVVINVTER 384
Query: 448 SPAAAPSFIRA 458
P+ ++
Sbjct: 385 VAPHDPTSLKV 395
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 49.1 bits (117), Expect = 3e-07
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSP----YWVRASPHMVEDTELMVSGLEPGWRYQF 421
+ W + GY V +R+T W + + ++ L+ G Y+
Sbjct: 33 QVTWTVDR--QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEI 90
Query: 422 RITAENVVGFSEPGPLSEPLTVT 444
++ G SE TV
Sbjct: 91 KVRPYFNEF---QGMDSESKTVR 110
Score = 49.1 bits (117), Expect = 3e-07
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 705 TIRWEPPEYDGGSPVLGYLVEHRRTGSP----YWVRASPHMVEDTELMVSGLEPGWRYQF 760
+ W + GY V +R+T W + + ++ L+ G Y+
Sbjct: 33 QVTWTVDR--QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEI 90
Query: 761 RITAENVVGFSEPGPLSEPLTVT 783
++ G SE TV
Sbjct: 91 KVRPYFNEF---QGMDSESKTVR 110
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 52.7 bits (125), Expect = 5e-07
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 355 PDSPSL----DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMV 410
PSL D D +++RWE + + +++R+ + + + + + +
Sbjct: 322 MAPPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMAL 381
Query: 411 SGLEPGWRYQFRITAENVVGFSE--PGPLSEPLTVT 444
LEP RY R+ SE +
Sbjct: 382 PALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWD 417
Score = 52.7 bits (125), Expect = 5e-07
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 694 PDSPSL----DRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMV 749
PSL D D +++RWE + + +++R+ + + + + + +
Sbjct: 322 MAPPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMAL 381
Query: 750 SGLEPGWRYQFRITAENVVGFSE--PGPLSEPLTVT 783
LEP RY R+ SE +
Sbjct: 382 PALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWD 417
Score = 50.4 bits (119), Expect = 2e-06
Identities = 26/153 (16%), Positives = 43/153 (28%), Gaps = 13/153 (8%)
Query: 657 SVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG 716
+ +S D + P P Q+ S D+D F + W
Sbjct: 82 TDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQI-----STDQDHFLLTWSVALGSPQ 136
Query: 717 SP-----VLGYLVEHRRTGSPYWVRASPHMVEDTE--LMVSGLEPGWRYQFRITAENVVG 769
S L + V ++R W A+ + ++ L L P Y R+ G
Sbjct: 137 SHWLSPGDLEFEVVYKRLQDS-WEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPG 195
Query: 770 FSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
G S+ S + + L
Sbjct: 196 SRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFF 228
Score = 49.6 bits (117), Expect = 4e-06
Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 10/131 (7%)
Query: 340 VIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP-----VLGYLVEHRRTGSPY 394
V P +P+ L S D+D F + W S L + V ++R
Sbjct: 101 VTLTQHVQPPEPRDL--QISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDS- 157
Query: 395 WVRASPHMVEDTE--LMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 452
W A+ + ++ L L P Y R+ G G S+ S
Sbjct: 158 WEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGD 217
Query: 453 PSFIRALHDTT 463
+ + L
Sbjct: 218 EAQPQNLECFF 228
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 50.6 bits (120), Expect = 7e-07
Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 14/125 (11%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM-VEDTE--LMVSGLEPGWRYQF 421
++W PPE G V Y V++ G W+ S + T L + +Y
Sbjct: 24 NVLQWTPPEGLQGVKV-TYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYA 82
Query: 422 RITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPT 481
R+ A S+ + + P AL ++ +V +
Sbjct: 83 RVRAIWGTKCSKWAESGRF--YPFLETQIGPPEV--------ALTTDEKSISVVLTAPEK 132
Query: 482 PKVSW 486
K +
Sbjct: 133 WKRNP 137
Score = 50.2 bits (119), Expect = 9e-07
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM-VEDTE--LMVSGLEPGWRYQF 760
++W PPE G V Y V++ G W+ S + T L + +Y
Sbjct: 24 NVLQWTPPEGLQGVKV-TYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYA 82
Query: 761 RITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 794
R+ A S+ + + P
Sbjct: 83 RVRAIWGTKCSKWAESGRF--YPFLETQIGPPEV 114
Score = 43.7 bits (102), Expect = 1e-04
Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 21/124 (16%)
Query: 342 KKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP------------VLGYLVEHRR 389
+ P + L D S+ ++ PE +P L Y V
Sbjct: 105 LETQIGPPEVALTTDEKSI-----SVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLN 159
Query: 390 TGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSP 449
T S V + L+++ LEP Y + + V G SE +
Sbjct: 160 TKSNRTWSQ---CVTNHTLVLTWLEPNTLYCVHVESF-VPGPPRRAQPSEKQCARTLKDQ 215
Query: 450 AAAP 453
++
Sbjct: 216 SSIE 219
Score = 43.7 bits (102), Expect = 1e-04
Identities = 22/122 (18%), Positives = 36/122 (29%), Gaps = 21/122 (17%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP------------VLGYLVEHRRTG 730
P + L D S+ ++ PE +P L Y V T
Sbjct: 107 TQIGPPEVALTTDEKSI-----SVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTK 161
Query: 731 SPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAA 790
S V + L+++ LEP Y + + V G SE + ++
Sbjct: 162 SNRTWSQ---CVTNHTLVLTWLEPNTLYCVHVESF-VPGPPRRAQPSEKQCARTLKDQSS 217
Query: 791 AP 792
Sbjct: 218 IE 219
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 47.6 bits (113), Expect = 9e-07
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 11/105 (10%)
Query: 452 APSFIRALHDT-TALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS-- 508
L T +E T +V+ + W + ++ + DN I
Sbjct: 5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELV 64
Query: 509 -------TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
++ + +L DEG+ C+ + A L + P
Sbjct: 65 RASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSK-AYLTVLGVP 108
Score = 40.2 bits (94), Expect = 4e-04
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 563 GEIIKLKVSMAGMPPPTARWLH--------NGEPLTSGGRYEITHTD-RYLNLRISDARR 613
G L + + +W + + + R E+ L++ +SD
Sbjct: 21 GGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSL 80
Query: 614 ADRGEYQAHGVNSLGEDVASFLVTVTDRP 642
+D G+Y + ++ + +TV P
Sbjct: 81 SDEGQYTCS-LFTMPVKTSKAYLTVLGVP 108
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 49.3 bits (117), Expect = 1e-06
Identities = 13/99 (13%), Positives = 33/99 (33%), Gaps = 3/99 (3%)
Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHMVED 405
P P + +++ + I WE P + + L + + + +G W + +
Sbjct: 109 KPLPPSSVKAEITINIGLLKISWEKPVFPENN--LQFQIRYGLSGKEVQWKMYEVYDAKS 166
Query: 406 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
+ + + Y ++ + + G S P
Sbjct: 167 KSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAYTV 205
Score = 49.3 bits (117), Expect = 1e-06
Identities = 13/99 (13%), Positives = 33/99 (33%), Gaps = 3/99 (3%)
Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHMVED 744
P P + +++ + I WE P + + L + + + +G W + +
Sbjct: 109 KPLPPSSVKAEITINIGLLKISWEKPVFPENN--LQFQIRYGLSGKEVQWKMYEVYDAKS 166
Query: 745 TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
+ + + Y ++ + + G S P
Sbjct: 167 KSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAYTV 205
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 49.7 bits (118), Expect = 1e-06
Identities = 30/217 (13%), Positives = 60/217 (27%), Gaps = 41/217 (18%)
Query: 456 IRALHDTTALEDEKVEFTVQVEGIPTP-----KVSWYKDGF-------------EIFSSR 497
++A + V ++ +++W + G S+
Sbjct: 3 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 62
Query: 498 RQRIVTDNDIS-----TLIIHQAALMDEGEIKCT-ATNRAGHSITKARLRLEAPPTIRLP 551
R V + +L + + DEG C T G LR+ A P
Sbjct: 63 RLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQN--T 120
Query: 552 KQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLT--------SGGRYEITHTDRY 603
+ + L + VS G PP W + + G +T
Sbjct: 121 AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSL--- 177
Query: 604 LNLRISDARRADRGEY--QAHGVNSLGEDVASFLVTV 638
+ + + D + + + + + +TV
Sbjct: 178 --WILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTV 212
Score = 44.3 bits (104), Expect = 8e-05
Identities = 33/244 (13%), Positives = 62/244 (25%), Gaps = 45/244 (18%)
Query: 322 VRLEEAITGLNVGTD--LYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP 379
V+ + G +G L C ++ P V + W G S
Sbjct: 3 VQAPTQVPGF-LGDSVTLPCYLQVPNME-------------VTHVSQLTWA---RHGESG 45
Query: 380 VLGYLVEHRRTGSPYWVRASPHMVE------DTELMVSGLEP---GWRYQFRITAENVVG 430
+ + + R D L + GL G Y
Sbjct: 46 SMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGS-YTCLFVTFPQGS 104
Query: 431 FSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFT-VQVEGIPTPKVSWYKD 489
S L V A P + + V G P +++W+ D
Sbjct: 105 RSVDIWL----RV------LAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSD 154
Query: 490 GFEIFSSRRQRIVTD---NDISTLIIHQAALMDEGEIKCTATNRAGHS--ITKARLRLEA 544
+ + + S I+ ++ +D ++ C + + + L +
Sbjct: 155 LGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYY 214
Query: 545 PPTI 548
P
Sbjct: 215 PHHH 218
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 49.0 bits (116), Expect = 2e-06
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
P P L S S + W + L +LV++R W S
Sbjct: 99 PWAPENLTLHKLSES----QLELNWNNRF---LNHCLEHLVQYRTDWDHSWTEQSV--DY 149
Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 439
+ + ++ RY FR+ + SE
Sbjct: 150 RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 184
Score = 49.0 bits (116), Expect = 2e-06
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
P P L S S + W + L +LV++R W S
Sbjct: 99 PWAPENLTLHKLSES----QLELNWNNRF---LNHCLEHLVQYRTDWDHSWTEQSV--DY 149
Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 778
+ + ++ RY FR+ + SE
Sbjct: 150 RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 184
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 49.8 bits (118), Expect = 2e-06
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
P P L S S + W + L +LV++R W S
Sbjct: 137 PWAPENLTLHKLSES----QLELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSV--DY 187
Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 439
+ + ++ RY FR+ + SE
Sbjct: 188 RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 222
Score = 49.8 bits (118), Expect = 2e-06
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 9/95 (9%)
Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 743
P P L S S + W + L +LV++R W S
Sbjct: 137 PWAPENLTLHKLSES----QLELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSV--DY 187
Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 778
+ + ++ RY FR+ + SE
Sbjct: 188 RHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 222
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 50.1 bits (118), Expect = 2e-06
Identities = 38/327 (11%), Positives = 67/327 (20%), Gaps = 39/327 (11%)
Query: 455 FIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQ 514
++ L E V T + ++W D TL I
Sbjct: 9 YVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSG---------KTLTIQV 57
Query: 515 AALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAG 574
D G+ C + L L + +
Sbjct: 58 KEFGDAGQYTCHKGGEVLSH---SLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNY 114
Query: 575 MPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF 634
T WL TD +++ S +G S
Sbjct: 115 SGRFTCWWLTT------------ISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDN 162
Query: 635 LVTVTDRPLPPGKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLP 694
A +S+ + + R P P+ L
Sbjct: 163 KEYEYSVECQEDSA--CPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQ 220
Query: 695 DSPSLDRDVFTIRWEPP---EYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSG 751
P + + WE P L + V+ + T+ +
Sbjct: 221 LKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREK-----KDRVFTDKTSAT 275
Query: 752 LEPGWRYQFRITAENVVGFSEPGPLSE 778
+ + A++ SE
Sbjct: 276 VICRKNASISVRAQDRYYS---SSWSE 299
Score = 39.3 bits (90), Expect = 0.005
Identities = 15/122 (12%), Positives = 31/122 (25%), Gaps = 11/122 (9%)
Query: 321 YVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPP---EYDGG 377
+ +A+ L + P P+ L P + + WE P
Sbjct: 186 IEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHS 245
Query: 378 SPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPL 437
L + V+ + T+ + + + A++
Sbjct: 246 YFSLTFCVQVQGKSKREK-----KDRVFTDKTSATVICRKNASISVRAQDRYYS---SSW 297
Query: 438 SE 439
SE
Sbjct: 298 SE 299
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 49.0 bits (116), Expect = 2e-06
Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 7/125 (5%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM-VEDTE--LMVSGLEPGWRYQF 760
++W+P Y V+++ G W ++ L + Y
Sbjct: 23 NILQWQPGR-ALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYG 81
Query: 761 RITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF-IRALHDTTALEDEKPRNTNNCDYES 819
R+ A + +SE + + P I ++ + + P E
Sbjct: 82 RVRAASAGSYSEWSMTPRF--TPWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEK 139
Query: 820 KRTFQ 824
+ +
Sbjct: 140 NVSIE 144
Score = 47.9 bits (113), Expect = 5e-06
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM-VEDTE--LMVSGLEPGWRYQF 421
++W+P Y V+++ G W ++ L + Y
Sbjct: 23 NILQWQPGR-ALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYG 81
Query: 422 RITAENVVGFSEPGPLSEPLTV 443
R+ A + +SE
Sbjct: 82 RVRAASAGSYSEWSMTPRFTPW 103
Score = 43.6 bits (102), Expect = 1e-04
Identities = 16/131 (12%), Positives = 23/131 (17%), Gaps = 23/131 (17%)
Query: 668 DGGCKIGNYIVEYFRP----PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV---- 719
G + F P P + + SL + P
Sbjct: 87 SAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSL-----LVILHAPNLPYRYQKEKNV 141
Query: 720 -------LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSE 772
L Y V + + + L P Y
Sbjct: 142 SIEDYYELLYRVFIINNSLEKEQKVYE--GAHRAVEIEALTPHSSYCVVAEIYQ-PMLDR 198
Query: 773 PGPLSEPLTVT 783
SE V
Sbjct: 199 RSQRSEERCVE 209
Score = 43.2 bits (101), Expect = 1e-04
Identities = 14/112 (12%), Positives = 20/112 (17%), Gaps = 20/112 (17%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV-----------LGYLVEHRRTGS 392
PP + + SL + P L Y V
Sbjct: 107 KIDPPV-MNITQVNGSL-----LVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSL 160
Query: 393 PYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
+ + + L P Y SE V
Sbjct: 161 EKEQKVYE--GAHRAVEIEALTPHSSYCVVAEIYQ-PMLDRRSQRSEERCVE 209
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 46.5 bits (110), Expect = 2e-06
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 7/102 (6%)
Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPE--YDGGSPVLGYLVEHRRTGSPYWVRASPHM 402
P PP P PS R + + W+ P D S L + + +R W
Sbjct: 8 PDPPENVVARP-VPSNPRRL-EVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVEL-- 63
Query: 403 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
T ++ G Y ++ A S T
Sbjct: 64 SNGTAHTITDAYAGKEYIIQVAA-KDNEIGTWSDWSVAAHAT 104
Score = 46.5 bits (110), Expect = 2e-06
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 7/102 (6%)
Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPE--YDGGSPVLGYLVEHRRTGSPYWVRASPHM 741
P PP P PS R + + W+ P D S L + + +R W
Sbjct: 8 PDPPENVVARP-VPSNPRRL-EVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVEL-- 63
Query: 742 VEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
T ++ G Y ++ A S T
Sbjct: 64 SNGTAHTITDAYAGKEYIIQVAA-KDNEIGTWSDWSVAAHAT 104
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 49.9 bits (118), Expect = 2e-06
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 12/107 (11%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
PP + + +I+WE P Y V+ T + Y
Sbjct: 220 QINPPLNVTAEIEGTRM-----SIQWEKPVSAFPIHCFDYEVKIHNTRNGYLQ----IEK 270
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE---PLTVTYQR 447
T +S ++ +Y ++ A E G SE P+ V + R
Sbjct: 271 LMTNAFISIIDDLSKYDVQVRAAVSSMCREAGLWSEWSQPIYVGFSR 317
Score = 49.9 bits (118), Expect = 2e-06
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 12/107 (11%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
PP + + +I+WE P Y V+ T + Y
Sbjct: 220 QINPPLNVTAEIEGTRM-----SIQWEKPVSAFPIHCFDYEVKIHNTRNGYLQ----IEK 270
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE---PLTVTYQR 786
T +S ++ +Y ++ A E G SE P+ V + R
Sbjct: 271 LMTNAFISIIDDLSKYDVQVRAAVSSMCREAGLWSEWSQPIYVGFSR 317
Score = 40.6 bits (94), Expect = 0.002
Identities = 24/153 (15%), Positives = 42/153 (27%), Gaps = 16/153 (10%)
Query: 335 TDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV-LGYLVEHRRTGSP 393
DL K PP + L + ++W+P V L Y V+
Sbjct: 2 ADLLPDEKISLLPPVNFTI--KVTGLAQ--VLLQWKPNPDQEQRNVNLEYQVKINAPKED 57
Query: 394 YWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 453
+ V+ L G+ R +N S + P +
Sbjct: 58 DYE-----TRITESKAVTILHMGFSASVRTILQN----DHSLLASSWASAELHAPPGSPG 108
Query: 454 SFIRALHDTTALEDEKVEFTVQVEGIPTPKVSW 486
+ I L TT + ++ + +W
Sbjct: 109 TSIVNLTCTT--NTTEDNYSRLRSYQVSLHCTW 139
Score = 38.3 bits (88), Expect = 0.010
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 10/100 (10%)
Query: 704 FTIRWEPPEYDGGSPV-LGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRI 762
++W+P V L Y V+ + V+ L G+ R
Sbjct: 28 VLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYE-----TRITESKAVTILHMGFSASVRT 82
Query: 763 TAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTT 802
+N S + P + + I L TT
Sbjct: 83 ILQN----DHSLLASSWASAELHAPPGSPGTSIVNLTCTT 118
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 46.0 bits (108), Expect = 4e-06
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 12/105 (11%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIP---TPKVSWYKD---GFEIFSSRRQRIVTDND 506
F++ + + +V G P + W+K S R ++
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72
Query: 507 IST------LIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAP 545
++ L I + L D G + + + +EAP
Sbjct: 73 SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
Score = 36.7 bits (84), Expect = 0.007
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 561 EMGEIIKLKVSMAGMP---PPTARWL---HNGEPLTSGGRYEITHT-DRY-----LNLRI 608
E G+ + + G PT +W SG R+ + + + L I
Sbjct: 25 ETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHI 84
Query: 609 SDARRADRGEYQAHGVNSLGEDVASFLVTV 638
DRG Y+ D F + V
Sbjct: 85 GKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 46.4 bits (110), Expect = 8e-06
Identities = 20/166 (12%), Positives = 42/166 (25%), Gaps = 28/166 (16%)
Query: 478 GIPTPKVSWYKDGFEIF--SSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSI 535
+ ++ +G + S + R+ D L I+ + D G+ +
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHE-TEDQ 95
Query: 536 TKARLRLEAP---PTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTARWLHNGEPLTSG 592
K + + P I L + + E L S
Sbjct: 96 WKITMEVYEMVSKPMIYWECSN-----------ATLTCEVLEGTDVELKLYQGKEHLRSL 144
Query: 593 GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTV 638
+S R ++ VN + ++ +V
Sbjct: 145 R-----------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
Score = 36.8 bits (85), Expect = 0.015
Identities = 13/82 (15%), Positives = 22/82 (26%), Gaps = 19/82 (23%)
Query: 470 VEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATN 529
T +V ++ Y+ E S RQ+ ++ + KC A N
Sbjct: 118 ATLTCEVLEGTDVELKLYQGK-EHLRSLRQKTMSYQWTN----------LRAPFKCKAVN 166
Query: 530 RAGHSITKARLRLEAPPTIRLP 551
R + P
Sbjct: 167 RVSQESEM--------EVVNCP 180
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 44.9 bits (106), Expect = 1e-05
Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 15/108 (13%)
Query: 456 IRALHDTTALEDEKVEFTVQVEGIPTP--KVSWYKD-----------GFEIFSSRRQRIV 502
I + +A + + + +V+W + G+ I S + R+
Sbjct: 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66
Query: 503 TDNDISTLIIHQAALMDEGEIKCT-ATNRAGHSITKARLRLEAPPTIR 549
L + + D GE C T G + L +
Sbjct: 67 PGPG-LGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAE 113
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 46.4 bits (109), Expect = 1e-05
Identities = 24/193 (12%), Positives = 55/193 (28%), Gaps = 45/193 (23%)
Query: 466 EDEKVEFTVQVEGI---------PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAA 516
+ E +E+ V + G + W K+G + + L++ +
Sbjct: 2 DAENIEYKVSISGTSVELTCPLDSDENLKWEKNG---------QELPQKHDKHLVLQDFS 52
Query: 517 LM-DEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM 575
+ D G C ++ + R+ + + +D + + + + A
Sbjct: 53 EVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKN 112
Query: 576 PP-------------------PTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADR 616
T +WL +G ++ + T + + + R
Sbjct: 113 LVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNT-------WNLGNNAKDPR 165
Query: 617 GEYQAHGVNSLGE 629
G YQ G
Sbjct: 166 GTYQCQGAKETSN 178
Score = 35.6 bits (81), Expect = 0.039
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 10/90 (11%)
Query: 446 QRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDN 505
++ + + + D V T G+ + W KDG I +
Sbjct: 101 KKDGSQTNKAKNLVQVDGSRGDGSVLLTC---GLTDKTIKWLKDGSIISPLNATK----- 152
Query: 506 DISTLIIHQAALMDEGEIKCTATNRAGHSI 535
+T + A G +C + +
Sbjct: 153 --NTWNLGNNAKDPRGTYQCQGAKETSNPL 180
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 45.1 bits (106), Expect = 1e-05
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 11/115 (9%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD-----GGSPVLGYLVEHRRTGSPYWVRA 398
P GPP PQ + + + W PP G+ V GY V + G
Sbjct: 14 PAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK--GQRVAEVI 71
Query: 399 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 453
P + T + + L + + G S S V + P
Sbjct: 72 FPTA-DSTAVELVRLRSLEAKGVTVRTLSAQGESVD---SAVAAVPPELLVPPTP 122
Score = 45.1 bits (106), Expect = 1e-05
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 11/115 (9%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYD-----GGSPVLGYLVEHRRTGSPYWVRA 737
P GPP PQ + + + W PP G+ V GY V + G
Sbjct: 14 PAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK--GQRVAEVI 71
Query: 738 SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAP 792
P + T + + L + + G S S V + P
Sbjct: 72 FPTA-DSTAVELVRLRSLEAKGVTVRTLSAQGESVD---SAVAAVPPELLVPPTP 122
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 46.6 bits (110), Expect = 1e-05
Identities = 15/104 (14%), Positives = 24/104 (23%), Gaps = 11/104 (10%)
Query: 680 YFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP 739
++ D L I E P +LV + R
Sbjct: 105 RQSTILTRPGMEITKDGFHL-----VIELEDLG-----PQFEFLVAYWRREPGAEEHVKM 154
Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
+ + +EPG Y + V S+ V
Sbjct: 155 VRSGGIPVHLETMEPGAAYCVKAQTF-VKAIGRYSAFSQTECVE 197
Score = 46.6 bits (110), Expect = 1e-05
Identities = 15/100 (15%), Positives = 24/100 (24%), Gaps = 11/100 (11%)
Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
++ D L I E P +LV + R
Sbjct: 109 ILTRPGMEITKDGFHL-----VIELEDLG-----PQFEFLVAYWRREPGAEEHVKMVRSG 158
Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
+ + +EPG Y + V S+ V
Sbjct: 159 GIPVHLETMEPGAAYCVKAQTF-VKAIGRYSAFSQTECVE 197
Score = 37.4 bits (86), Expect = 0.013
Identities = 15/109 (13%), Positives = 27/109 (24%), Gaps = 12/109 (11%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTEL-------MVSGLEPGW 417
+ W P G + + Y VE++ + L + +
Sbjct: 22 HLLMWSPVIAPGET--VYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATV 79
Query: 418 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALE 466
Y R+ A S S ++S + D L
Sbjct: 80 PYNLRVRATLGSQTSAW---SILKHPFNRQSTILTRPGMEITKDGFHLV 125
Score = 37.4 bits (86), Expect = 0.013
Identities = 15/109 (13%), Positives = 27/109 (24%), Gaps = 12/109 (11%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTEL-------MVSGLEPGW 756
+ W P G + + Y VE++ + L + +
Sbjct: 22 HLLMWSPVIAPGET--VYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATV 79
Query: 757 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALE 805
Y R+ A S S ++S + D L
Sbjct: 80 PYNLRVRATLGSQTSAW---SILKHPFNRQSTILTRPGMEITKDGFHLV 125
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 47.6 bits (112), Expect = 1e-05
Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 4/136 (2%)
Query: 320 LYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSP 379
L +R E+ T D + +K P + L + ++ + + +
Sbjct: 76 LRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGL 135
Query: 380 VLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSE 439
Y + + S R + + L P Y ++ A + + G S
Sbjct: 136 SFTYSLVIWKNSSGVEER---IENIYSRHKIYKLSPETTYCLKVKAALLTS-WKIGVYSP 191
Query: 440 PLTVTYQRSPAAAPSF 455
+ P
Sbjct: 192 VHCIKTTVENELPPPE 207
Score = 46.8 bits (110), Expect = 2e-05
Identities = 14/111 (12%), Positives = 35/111 (31%), Gaps = 13/111 (11%)
Query: 338 YCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV---LGYLVEHRRTGSPY 394
++ PP ++ + + + ++W+ + V +L +
Sbjct: 196 KTTVENELPPPENIEVSVQNQN-----YVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYK 250
Query: 395 WVRASP-HMVEDTELMVS-GLEPGWRYQFRITAENVVGFSEPGPLSEPLTV 443
W + V+ T+ + + Y R+ A + S SE +
Sbjct: 251 WKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFW---SEEIKF 298
Score = 46.4 bits (109), Expect = 3e-05
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 704 FTIRWEPPEYDGGSPV---LGYLVEHRRTGSPYWVRASP-HMVEDTELMVS-GLEPGWRY 758
+ ++W+ + V +L + W + V+ T+ + + Y
Sbjct: 218 YVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIY 277
Query: 759 QFRITAENVVGFSEPGPLSEPLTV 782
R+ A + S SE +
Sbjct: 278 LLRVQASDGNNTSFW---SEEIKF 298
Score = 44.9 bits (105), Expect = 9e-05
Identities = 12/115 (10%), Positives = 30/115 (26%), Gaps = 4/115 (3%)
Query: 680 YFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP 739
+ + P + L + ++ + + + Y + + S R
Sbjct: 97 FRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEER--- 153
Query: 740 HMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 794
+ + L P Y ++ A + + G S + P
Sbjct: 154 IENIYSRHKIYKLSPETTYCLKVKAALLTS-WKIGVYSPVHCIKTTVENELPPPE 207
Score = 43.0 bits (100), Expect = 3e-04
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 16/129 (12%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM---VEDTELMVSGLEPGWRYQF 421
F +RW + G+ + + ++++TG W++ S L +
Sbjct: 19 FILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKL 76
Query: 422 RITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPT 481
RI AE S E + T R P + + A+ + +
Sbjct: 77 RIRAEK-ENTSSW---YEVDSFTPFRKAQIGPPEVHLEAEDKAI-------VIHISPGTK 125
Query: 482 PKVSWYKDG 490
V W DG
Sbjct: 126 DSVMWALDG 134
Score = 41.1 bits (95), Expect = 0.002
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHM---VEDTELMVSGLEPGWRYQF 760
F +RW + G+ + + ++++TG W++ S L +
Sbjct: 19 FILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKL 76
Query: 761 RITAEN 766
RI AE
Sbjct: 77 RIRAEK 82
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 44.8 bits (105), Expect = 2e-05
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 563 GEIIKLKVSMAGMPPPTARWLH--------NGEPLTSGGRYEITH-TDRYLNLRISDARR 613
G + LK + + +W + + R ++ T L++ IS+
Sbjct: 53 GGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVAL 112
Query: 614 ADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
AD GEY + ++ A LVTV P P
Sbjct: 113 ADEGEYTCS-IFTMPVRTAKSLVTVLGIPQKP 143
Score = 42.5 bits (99), Expect = 1e-04
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 10/103 (9%)
Query: 453 PSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDIS---- 508
D T + V QV+ + W + +R + DN I
Sbjct: 39 DDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS 98
Query: 509 -----TLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPP 546
++ I AL DEGE C+ + K+ + + P
Sbjct: 99 TPHELSISISNVALADEGEYTCSIFTMPVRT-AKSLVTVLGIP 140
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 45.4 bits (107), Expect = 3e-05
Identities = 28/150 (18%), Positives = 46/150 (30%), Gaps = 23/150 (15%)
Query: 463 TALEDEKVE----FTVQVEGIPTPKVSWYKDGFEIFSSR------------RQRIVTDND 506
T E V VE + ++ W K+ + + R N+
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 507 ISTLIIHQAALMDEGEIKCTATNRAG---HSITKARLRLEAPPTIRLPKQYEDGLLFEMG 563
+S ++I DEG +C A + L P + +
Sbjct: 65 LS-IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEI--PTS 121
Query: 564 EIIKLK-VSMAGMPPPTARWLHNGEPLTSG 592
I ++ + G P P WL NGE L +
Sbjct: 122 NIRRIICSTSGGFPEPHLSWLENGEELNAI 151
Score = 33.0 bits (75), Expect = 0.33
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Query: 593 GRYEITHTDRYLNLRISDARRADRGEYQ-----AHGVNSLGEDVASFLVTVTDRPLPPGK 647
R T+ ++ I R +D G Y+ E +A ++V P
Sbjct: 55 NRTIFDITNNL-SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI 113
Query: 648 AKVVMTLGKSVTLS 661
+ + +
Sbjct: 114 SDFEIPTSNIRRII 127
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 43.4 bits (102), Expect = 3e-05
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV----EDTELMVSGLEPGWRYQ 420
+ WE P S +L + V T P+ + ++ L G Y
Sbjct: 25 LRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYS 84
Query: 421 FRITAENVVGFSEP 434
+ ++
Sbjct: 85 LTLYGLRGPHKADS 98
Score = 43.4 bits (102), Expect = 3e-05
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV----EDTELMVSGLEPGWRYQ 759
+ WE P S +L + V T P+ + ++ L G Y
Sbjct: 25 LRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYS 84
Query: 760 FRITAENVVGFSEP 773
+ ++
Sbjct: 85 LTLYGLRGPHKADS 98
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 44.7 bits (105), Expect = 4e-05
Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 9/124 (7%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
++WE P + G + ++ TE S L + R+
Sbjct: 17 NILQWESPAFAKGQLT--FTAQYLSYRIFQDKCMQ---TTLTECDFSSLSKYGDHTLRVR 71
Query: 764 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSF-IRALHDTTALEDEKPRNTNNCDYESKRT 822
AE S+ + + P + L D + P+ N + + +
Sbjct: 72 AEFADEHSDW---VQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKIENEYETWTMKN 128
Query: 823 FQST 826
++
Sbjct: 129 VYNS 132
Score = 44.0 bits (103), Expect = 9e-05
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 363 DVFTIRWEPPEYDGGS---------PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGL 413
D +R+ P+ + Y V++ + G+ + + + ++ L
Sbjct: 106 DCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQIT---PQYDFEVLRNL 162
Query: 414 EPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
EP Y ++ + ++ G SEP+
Sbjct: 163 EPWTTYCVQVRGF-LPDRNKAGEWSEPVCEQ 192
Score = 44.0 bits (103), Expect = 9e-05
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 702 DVFTIRWEPPEYDGGS---------PVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGL 752
D +R+ P+ + Y V++ + G+ + + + ++ L
Sbjct: 106 DCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQIT---PQYDFEVLRNL 162
Query: 753 EPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
EP Y ++ + ++ G SEP+
Sbjct: 163 EPWTTYCVQVRGF-LPDRNKAGEWSEPVCEQ 192
Score = 44.0 bits (103), Expect = 9e-05
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 5/85 (5%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
++WE P + G + ++ TE S L + R+
Sbjct: 17 NILQWESPAFAKGQLT--FTAQYLSYRIFQDKCMQ---TTLTECDFSSLSKYGDHTLRVR 71
Query: 425 AENVVGFSEPGPLSEPLTVTYQRSP 449
AE S+ ++ P
Sbjct: 72 AEFADEHSDWVQITFSPVDDTIIGP 96
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 44.8 bits (105), Expect = 5e-05
Identities = 33/228 (14%), Positives = 56/228 (24%), Gaps = 35/228 (15%)
Query: 461 DTTALEDEKVEFTVQVEGIPTPK-VSWYKD--------------------GFEIFSSRRQ 499
+ + V G + W+ + R
Sbjct: 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68
Query: 500 RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITK-ARLRLEAPPT-IRLPKQYEDG 557
+ L++ +A + DE + C A + ARL + A P +
Sbjct: 69 PPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTL 128
Query: 558 LLFEMGEIIKLK-VSMAGMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADR 616
+ E S G P P W NG+ L S R
Sbjct: 129 SVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY------MTSRTVREAS 182
Query: 617 GEYQAHGVNSL---GEDVASFLVTVTDRPLPPGKAKVVMTLGKSVTLS 661
G L +D + LP G+ + + + L+
Sbjct: 183 GLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDS--PTFHLT 228
Score = 43.3 bits (101), Expect = 2e-04
Identities = 34/232 (14%), Positives = 59/232 (25%), Gaps = 39/232 (16%)
Query: 348 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTE 407
GK +L +P+ D + + W + G P L + DT
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSE--------LQVTMHDTR 65
Query: 408 LMVSGLEPGWRYQFRITAENV-----------VGFSEPGPLSEPLTVTYQRSPAAAPSFI 456
+ + + + V G + P A
Sbjct: 66 GRSPPYQLDSQGRLVLA--EAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSP 123
Query: 457 RALHDTTALEDEKVEFTVQVE-GIPTPKVSWYKDGFEIFSSRRQRIVTDND--------- 506
+ + + T G P PK++WY++G +
Sbjct: 124 NKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASG 183
Query: 507 ----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQY 554
STL + + C A +S+ + R PT L Y
Sbjct: 184 LLSLTSTLYLRLRKDDRDASFHCAAH----YSLPEGRHGRLDSPTFHLTLHY 231
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 44.8 bits (105), Expect = 6e-05
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 365 FTIRWEPP----EYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE----DTELMVSGLEPG 416
+ I W + L Y +++R G P+ V ++ L+
Sbjct: 115 YQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKD 174
Query: 417 WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
Y+ ++ A + G S G SE ++ +
Sbjct: 175 SSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEELK 212
Score = 44.8 bits (105), Expect = 6e-05
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 704 FTIRWEPP----EYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE----DTELMVSGLEPG 755
+ I W + L Y +++R G P+ V ++ L+
Sbjct: 115 YQISWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKD 174
Query: 756 WRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
Y+ ++ A + G S G SE ++ +
Sbjct: 175 SSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEELK 212
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 42.4 bits (100), Expect = 6e-05
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 13/101 (12%)
Query: 347 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT--GSPYWVRASPHMVE 404
P P L + + W Y V+ R T G PY A+ +
Sbjct: 4 APAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVK-RSTKSGGPYTTIATN--IT 55
Query: 405 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 445
T +G+ G +Y + ++A + + S + Y
Sbjct: 56 STNYTDTGVATGTKYYYVVSAVSNGVETLN---SAEAILQY 93
Score = 42.4 bits (100), Expect = 6e-05
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 13/101 (12%)
Query: 686 PPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRT--GSPYWVRASPHMVE 743
P P L + + W Y V+ R T G PY A+ +
Sbjct: 4 APAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVK-RSTKSGGPYTTIATN--IT 55
Query: 744 DTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTY 784
T +G+ G +Y + ++A + + S + Y
Sbjct: 56 STNYTDTGVATGTKYYYVVSAVSNGVETLN---SAEAILQY 93
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 44.4 bits (104), Expect = 6e-05
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 3/108 (2%)
Query: 348 PGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 406
P P L + F + + VL + V +R+
Sbjct: 113 PEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKL 172
Query: 407 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 454
L+ L+P Y+ ++ + F G SE Y R+P S
Sbjct: 173 TLLQRKLQPAAMYEIKVRSIPDHYFK--GFWSEWSPSYYFRTPEINNS 218
Score = 44.4 bits (104), Expect = 6e-05
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 3/108 (2%)
Query: 687 PGKPQLLPDSPSLDRDVFTIRWEPPE-YDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDT 745
P P L + F + + VL + V +R+
Sbjct: 113 PEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKL 172
Query: 746 ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
L+ L+P Y+ ++ + F G SE Y R+P S
Sbjct: 173 TLLQRKLQPAAMYEIKVRSIPDHYFK--GFWSEWSPSYYFRTPEINNS 218
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 44.0 bits (103), Expect = 8e-05
Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 12/122 (9%)
Query: 336 DLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG-SPVLGYLVEHRRTGSPY 394
+ ++ P Q++ I WE + L + G
Sbjct: 99 KPFENLR--LMAPISLQVVHVETHR----CNISWEISQASHYFERHLEFEARTLSPGHT- 151
Query: 395 WVRASPHMVED--TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAA 452
W A ++ + + L P +Y+F++ + + G S R+ AA
Sbjct: 152 WEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEF--TTWSPWSQPLAFRTKPAA 209
Query: 453 PS 454
Sbjct: 210 LG 211
Score = 43.6 bits (102), Expect = 1e-04
Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 10/113 (8%)
Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG-SPVLGYLVEHRRTGSPYWVRASPHMV 742
P Q++ I WE + L + G W A +
Sbjct: 106 LMAPISLQVVHVETHR----CNISWEISQASHYFERHLEFEARTLSPGHT-WEEAPLLTL 160
Query: 743 ED--TELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPS 793
+ + + L P +Y+F++ + + G S R+ AA
Sbjct: 161 KQKQEWICLETLTPDTQYEFQVRVKPLQGEF--TTWSPWSQPLAFRTKPAALG 211
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 41.1 bits (97), Expect = 1e-04
Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 16/101 (15%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 403
P P + S T+ W + G V GY V + V
Sbjct: 3 APTAPTNLASTAQTTS----SITLSWTASTDNVG--VTGYDVY--NGTALATT------V 48
Query: 404 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 444
T +SGL Y F + A++ G S ++V
Sbjct: 49 TGTTATISGLAADTSYTFTVKAKDAAG--NVSAASNAVSVK 87
Score = 41.1 bits (97), Expect = 1e-04
Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 16/101 (15%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMV 742
P P + S T+ W + G V GY V + V
Sbjct: 3 APTAPTNLASTAQTTS----SITLSWTASTDNVG--VTGYDVY--NGTALATT------V 48
Query: 743 EDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVT 783
T +SGL Y F + A++ G S ++V
Sbjct: 49 TGTTATISGLAADTSYTFTVKAKDAAG--NVSAASNAVSVK 87
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 44.5 bits (104), Expect = 1e-04
Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 7/93 (7%)
Query: 365 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 424
W PPE + L Y + + L Q
Sbjct: 20 VIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPET------RRSIEVPLNERICLQVGSQ 73
Query: 425 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR 457
+P L E + P +A + ++
Sbjct: 74 CSTNES-EKPSILVEKCISPPEGDPESAVTELQ 105
Score = 44.5 bits (104), Expect = 1e-04
Identities = 13/93 (13%), Positives = 22/93 (23%), Gaps = 7/93 (7%)
Query: 704 FTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRIT 763
W PPE + L Y + + L Q
Sbjct: 20 VIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPET------RRSIEVPLNERICLQVGSQ 73
Query: 764 AENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIR 796
+P L E + P +A + ++
Sbjct: 74 CSTNES-EKPSILVEKCISPPEGDPESAVTELQ 105
Score = 44.1 bits (103), Expect = 1e-04
Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 19/135 (14%)
Query: 657 SVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGG 716
SV + + + P PP L + L ++WE P +
Sbjct: 173 SVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDL-----YVQWENP-QNFI 226
Query: 717 SPVLGYLVEHRRTGSPYW------------VRASPHMVEDTELMVSGLEPGWRYQFRITA 764
S L Y VE + + ++ + MV G+ P RI
Sbjct: 227 SRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRV 286
Query: 765 -ENVVGFSEPGPLSE 778
N + + + S
Sbjct: 287 KTNKLCYEDDKLWSN 301
Score = 43.7 bits (102), Expect = 2e-04
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 16/134 (11%)
Query: 319 PLYVRLEEAITGLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGS 378
V++ + V P P + + S D ++WE P + S
Sbjct: 171 QHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIK--NLSFHNDDLYVQWENP-QNFIS 227
Query: 379 PVLGYLVEHRRTGSPYW------------VRASPHMVEDTELMVSGLEPGWRYQFRITA- 425
L Y VE + + ++ + MV G+ P RI
Sbjct: 228 RCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVK 287
Query: 426 ENVVGFSEPGPLSE 439
N + + + S
Sbjct: 288 TNKLCYEDDKLWSN 301
Score = 32.9 bits (74), Expect = 0.49
Identities = 20/185 (10%), Positives = 39/185 (21%), Gaps = 8/185 (4%)
Query: 285 SLWKMYRVRKKFADIIEQKKQAKKTADNQFENQAPLYVRLEEAITGLNVGTDLYCVIKKP 344
SLW K I + + + + + C+
Sbjct: 35 SLWYFSHFGDKQDKKIAPETRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPE 94
Query: 345 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVE 404
P L + W P SP Y + + + E
Sbjct: 95 GDPESAVTEL-QCIWHNLSYMKCSWLPGR--NTSPDTNYTLYYWHRSLEKIHQCENIFRE 151
Query: 405 DT----ELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALH 460
++ ++ Q + + P + +T + P P
Sbjct: 152 GQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKP-DPPHIKNLSF 210
Query: 461 DTTAL 465
L
Sbjct: 211 HNDDL 215
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 43.2 bits (101), Expect = 2e-04
Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 17/178 (9%)
Query: 480 PTPKVSWYKDGFEIF----SSRRQRIVTDND-----ISTLIIHQAALMDEGEIKCTATNR 530
V+ Y DG E+ + R R D + L IH D G+ C +
Sbjct: 46 LRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDG 105
Query: 531 AGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLK-VSMAGMPPPTARWL-HNGEP 588
+ KA + L+ G I L+ S P P +W + GE
Sbjct: 106 DFYE--KALVELKVAALGSDLHVDVKG---YKDGGIHLECRSTGWYPQPQIQWSNNKGEN 160
Query: 589 LTSGGRYEITHTDRYLNLRIS-DARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
+ + + + S R + +SL + +++ D
Sbjct: 161 IPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADPFFRS 218
Score = 40.5 bits (94), Expect = 0.001
Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 33/204 (16%)
Query: 357 SPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPG 416
P++ + ++W +V G R S T ++ G+ G
Sbjct: 29 FPTMSAETMELKWVSSSLRQ-------VVNVYADGKEVEDRQSAPYRGRTSILRDGITAG 81
Query: 417 WRYQFRITAENVVG---------FSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALED 467
+ RI NV F + + L + + D +D
Sbjct: 82 -KAALRIH--NVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLH-----VDVKGYKD 133
Query: 468 EKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDND-----ISTLIIHQAALMDEG 521
+ + G P P++ W + E + +V D +++I+ +
Sbjct: 134 GGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGS---SGE 190
Query: 522 EIKCTATNRAGHSITKARLRLEAP 545
+ CT + A + + P
Sbjct: 191 GVSCTIRSSLLGLEKTASISIADP 214
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 41.9 bits (98), Expect = 4e-04
Identities = 22/126 (17%), Positives = 35/126 (27%), Gaps = 13/126 (10%)
Query: 330 GLNVGTDLYCVIKKPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV---LGYLVE 386
+K P PG + + D + W P Y + + L Y V
Sbjct: 85 LWKGSFKPSEHVK--PRAPGNLTVHTNVS----DTLLLTWSNP-YPPDNYLYNHLTYAVN 137
Query: 387 HRRTGSPYWVRA--SPHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT-V 443
P R ++ + S L+ G Y+ R+ A + S
Sbjct: 138 IWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWH 197
Query: 444 TYQRSP 449
R P
Sbjct: 198 NSYREP 203
Score = 41.6 bits (97), Expect = 6e-04
Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 11/111 (9%)
Query: 684 PGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV---LGYLVEHRRTGSPYWVRA--S 738
P PG + + D + W P Y + + L Y V P R
Sbjct: 98 PRAPGNLTVHTNVS----DTLLLTWSNP-YPPDNYLYNHLTYAVNIWSENDPADFRIYNV 152
Query: 739 PHMVEDTELMVSGLEPGWRYQFRITAENVVGFSEPGPLSEPLT-VTYQRSP 788
++ + S L+ G Y+ R+ A + S R P
Sbjct: 153 TYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREP 203
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 42.7 bits (101), Expect = 7e-04
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 29 RRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQ 88
RDER + + Q + RGYL +RK ++ + IQ R +
Sbjct: 773 MRDER----LSKIISMFQAHIRGYL-IRKAYKKLQDQRIGLSVIQRNIR----KWLVLRN 823
Query: 89 YLALK 93
+ K
Sbjct: 824 WQWWK 828
Score = 41.9 bits (99), Expect = 0.001
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 5 RSDYLNLRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLA 64
R + L+ + Q R L R+ ++ R VIQ+ R +L + +
Sbjct: 774 RDERLSKII--SMFQAHIRGYLI-RKAYKKLQDQRIGLSVIQRNIRKWL----VLRNWQW 826
Query: 65 MK 66
K
Sbjct: 827 WK 828
Score = 41.9 bits (99), Expect = 0.001
Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 172 RNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALR---TATITIQTRFRAY 228
+ L LE L Q R R+ Y L+ IQ R +
Sbjct: 763 KAGVLGNLEEMRDERLSKIISMFQAHIR----GYLIRKAYKKLQDQRIGLSVIQRNIRKW 818
Query: 229 LIAKN 233
L+ +N
Sbjct: 819 LVLRN 823
Score = 37.3 bits (87), Expect = 0.029
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 268 EQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQAKK 308
E+ R E+ + Q+ + Y +RK + + +Q+
Sbjct: 771 EEMRDERL-SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSV 810
Score = 35.4 bits (82), Expect = 0.13
Identities = 15/98 (15%), Positives = 23/98 (23%), Gaps = 36/98 (36%)
Query: 199 RANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYER 258
+A V + R L Q R YL R Y +L+ R
Sbjct: 763 KAGVLGNLEEMRDERLSKIISMFQAHIRGYL----IRKAYKKLQDQRI------------ 806
Query: 259 VIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKF 296
IQ + + V + +
Sbjct: 807 --------------------GLSVIQRNIRKWLVLRNW 824
Score = 33.1 bits (76), Expect = 0.60
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 17/70 (24%)
Query: 119 AKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKAS---VIQQWYR--- 172
L RD L + Q R R + ++ + VIQ+ R
Sbjct: 768 GNLEEMRDER----LSKIISMFQAHIR----GYLIRKAYKKLQDQRIGLSVIQRNIRKWL 819
Query: 173 ---NTKLMRL 179
N + +L
Sbjct: 820 VLRNWQWWKL 829
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 40.1 bits (93), Expect = 0.002
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 344 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP-HM 402
P P Q + + W+ G+P Y +E++ G WV
Sbjct: 1 PEDPSDLLQHV--KFQSSNFENILTWDSGP--EGTPDTVYSIEYKTYGERDWVAKKGCQR 56
Query: 403 VEDTE--LMVSGLEPGWRYQFRITAENVVGFSE 433
+ L V Y R+TA + G S
Sbjct: 57 ITRKSCNLTVETGNLTELYYARVTAVSAGGRSA 89
Score = 40.1 bits (93), Expect = 0.002
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 683 PPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASP-HM 741
P P Q + + W+ G+P Y +E++ G WV
Sbjct: 1 PEDPSDLLQHV--KFQSSNFENILTWDSGP--EGTPDTVYSIEYKTYGERDWVAKKGCQR 56
Query: 742 VEDTE--LMVSGLEPGWRYQFRITAENVVGFSE 772
+ L V Y R+TA + G S
Sbjct: 57 ITRKSCNLTVETGNLTELYYARVTAVSAGGRSA 89
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 38.9 bits (90), Expect = 0.004
Identities = 16/126 (12%), Positives = 26/126 (20%), Gaps = 7/126 (5%)
Query: 519 DEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP 578
E + C + +R P + +GE L + G P
Sbjct: 62 PETQPVCFFRCARRTLQARGLIRTFQRP--DRVELMPLPPWQPVGENFTLSCRVPGAGPR 119
Query: 579 ---TARWLHNGEPLTSGGRYEITHTDR--YLNLRISDARRADRGEYQAHGVNSLGEDVAS 633
T L + L R L + R + L
Sbjct: 120 ASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLG 179
Query: 634 FLVTVT 639
+
Sbjct: 180 LFENSS 185
Score = 32.7 bits (74), Expect = 0.41
Identities = 12/126 (9%), Positives = 24/126 (19%), Gaps = 8/126 (6%)
Query: 429 VGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG---IPTPKVS 485
L + + P E + +V G + ++
Sbjct: 69 FFRCARRTLQARGLIRTFQRP---DRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLT 125
Query: 486 WYKDGFEIFSSRRQRI--VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLE 543
+ E+ + T + C A
Sbjct: 126 LLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLGLFENSS 185
Query: 544 APPTIR 549
AP +R
Sbjct: 186 APRELR 191
Score = 29.7 bits (66), Expect = 4.2
Identities = 26/163 (15%), Positives = 41/163 (25%), Gaps = 16/163 (9%)
Query: 561 EMGEIIKLKVSMAGMPPPTA--RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGE 618
E G + L S P G R+L ++ D R +
Sbjct: 15 ERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRG--------LRWLARQLVDIR-EPETQ 65
Query: 619 YQAHGVNSLGEDVASFLVTVTDRPLPP--GKAKVVMTLGKSVTLSWSEPEDDGGCKIGNY 676
+ A L+ RP +G++ TLS P G +
Sbjct: 66 PVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVP---GAGPRASL 122
Query: 677 IVEYFRPPGPPGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPV 719
+ R + + P V T D G+
Sbjct: 123 TLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANF 165
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 38.2 bits (88), Expect = 0.006
Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 8/143 (5%)
Query: 500 RIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQYEDGLL 559
+ + + + + + ++ + C + G S K L + P +
Sbjct: 40 KELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTP--ERVELAPLPSW 97
Query: 560 FEMGEIIKLKVSMAGMPPP---TARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADR 616
+G+ + L+ + G P T L + L R + + R
Sbjct: 98 QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELK---REPAVGEPAEVTTTVLVRRDHHG 154
Query: 617 GEYQAHGVNSLGEDVASFLVTVT 639
++ L +
Sbjct: 155 AQFSCRTELDLRPQGLELFENTS 177
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 38.8 bits (89), Expect = 0.010
Identities = 11/66 (16%), Positives = 15/66 (22%), Gaps = 4/66 (6%)
Query: 576 PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGV-NSLGEDVASF 634
T W H E H L I + G Y S + +
Sbjct: 527 RHATYSWRHKENVEQ---SCEPGHQSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHW 583
Query: 635 LVTVTD 640
+ D
Sbjct: 584 QLLPED 589
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 38.8 bits (90), Expect = 0.010
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 509 TLIIHQAALMDEGEIKCTATNRAGHSI-TKARLRLEAPPT----IRLPKQYEDGLLFEMG 563
+L + + DEG +C A NR G + R+R+ P + + G+ ++G
Sbjct: 433 SLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVG 492
Query: 564 EIIKLKVSMAGMPPPTARWLHNGEPLTSGGR 594
VS P T W +G+PL +
Sbjct: 493 TC----VSEGSYPAGTLSWHLDGKPLVPNEK 519
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 38.3 bits (89), Expect = 0.011
Identities = 34/256 (13%), Positives = 57/256 (22%), Gaps = 36/256 (14%)
Query: 430 GFSEPGPLSEPLT--VTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWY 487
S + + P + A V Y
Sbjct: 6 HGSGS---DDDDKGSHMGGQDK---PF-LSAWPSAVVPRGGHVTLRCHYRH-RFNNFMLY 57
Query: 488 KDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKAR---LRLEA 544
K+ + + G C ++ + A + +
Sbjct: 58 KED----RIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMV 113
Query: 545 PPTIRLPKQYEDGLLFEMGEIIKLKVSM-----AGMPPPTARWLHNGEPLTSGGRYEITH 599
R P LL G ++K + + + G H
Sbjct: 114 TGNHRKP-----SLLAHPGPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIH 168
Query: 600 TDRYL-NLRISDARRADRGEYQAHGVNSLGEDVASFL-----VTVTDRPLPPG---KAKV 650
N I A G Y+ +G + S + VT P +
Sbjct: 169 DGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP 228
Query: 651 VMTLGKSVTLSWSEPE 666
+ G+SVTLS S
Sbjct: 229 KVQAGESVTLSCSSRS 244
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 35.9 bits (82), Expect = 0.011
Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 7/76 (9%)
Query: 469 KVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTAT 528
V T P ++ W + I + + ++ + + L G C
Sbjct: 23 TVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 80
Query: 529 NRAGHSIT-----KAR 539
+AR
Sbjct: 81 GSKPEDANFYLYLRAR 96
Score = 31.7 bits (71), Expect = 0.34
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 576 PPPTARWLHNGEPLTSGGRYEIT-HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASF 634
P W HN + + + + +L+L+ + G Y + S ED +
Sbjct: 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLK-EFSELEQSGYYVCYPRGSKPEDANFY 90
Query: 635 L 635
L
Sbjct: 91 L 91
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 37.2 bits (85), Expect = 0.017
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 6/82 (7%)
Query: 468 EKVEFTVQVEGI-PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCT 526
+ T ++ V W + + +D S L + A+L G C
Sbjct: 23 ASRQLTCRLACADRGASVQWRGL-----DTSLGAVQSDTGRSVLTVRNASLSAAGTRVCV 77
Query: 527 ATNRAGHSITKARLRLEAPPTI 548
+ +L + A P
Sbjct: 78 GSCGGRTFQHTVQLLVYAFPNQ 99
Score = 33.3 bits (75), Expect = 0.25
Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 9/104 (8%)
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPP-PTARWLHNGEPLTSGGRYEITHTD 601
P + P E + +G +L +A + +W L +
Sbjct: 5 VKPLQVEPP---EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSV- 60
Query: 602 RYLNLRISDARRADRGEYQAHGVNSLGEDVASFLVTVTDRPLPP 645
L + +A + G G + + V P
Sbjct: 61 ----LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQL 100
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 37.1 bits (85), Expect = 0.018
Identities = 34/208 (16%), Positives = 53/208 (25%), Gaps = 39/208 (18%)
Query: 463 TALEDEKVE----FTVQVEGIPTPK---VSWYKDG---------------FEIFSSRRQR 500
T E V F+ + V W++DG + + R
Sbjct: 11 TVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGR 70
Query: 501 IVTDNDIS----TLIIHQAALMDEGEIKCTATNR--AGHSITKARLRLEAPPTIRLPKQY 554
D+ +L I A + D G +S + +L LE I P +
Sbjct: 71 FRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIH 130
Query: 555 EDGLLFEMGEIIKLKVSMA----GMPPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISD 610
L G +L S+ PP T W N T R L ++
Sbjct: 131 FLEPLES-GRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE------TTRSSELTLTP 183
Query: 611 ARRADRGEYQAHGVNSLGEDVASFLVTV 638
+ V +
Sbjct: 184 RPEDHGTNLTCQMKRQGAQVTTERTVQL 211
Score = 36.0 bits (82), Expect = 0.038
Identities = 16/129 (12%), Positives = 29/129 (22%), Gaps = 17/129 (13%)
Query: 418 RYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQV- 476
Y FR+ V +S L + + + +
Sbjct: 96 SYFFRVERGRDVKYS---YQQNKLNLEVTALIEKPDIHFLEPLE----SGRPTRLSCSLP 148
Query: 477 ---EGIPTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH 533
E P SW + R S L + + C +
Sbjct: 149 GSCEAGPPLTFSWTGNALSPLDPETTRS------SELTLTPRPEDHGTNLTCQMKRQGAQ 202
Query: 534 SITKARLRL 542
T+ ++L
Sbjct: 203 VTTERTVQL 211
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix
bundle, actin-binding, ATP-binding, calmodulin-binding,
coiled coil; 2.70A {Sus scrofa}
Length = 148
Score = 35.4 bits (81), Expect = 0.034
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 259 VIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQAKKTADN 312
+ ++KLK + KYR + +K+Q +M+ +++ I+ +
Sbjct: 31 SLSVIKLKN----KIKYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLKKR 80
Score = 30.8 bits (69), Expect = 1.2
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 21/139 (15%)
Query: 12 RAKTILIQTLWR----SKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKS 67
R LI + W+ L++ + + + I +QK R +L R+ + +
Sbjct: 14 RVNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEACIKMQKTIRMWLCKRRHKPRIDGLV- 72
Query: 68 SAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEF--------LKLKHATIA---IQTL 116
K+ + L + K KQ ++ K+K + IQ
Sbjct: 73 ---KVGTLKKRLDKFNEVVSALKDGKQEMSKQVKDLEISIDALMAKIKSTMMTREQIQKE 129
Query: 117 YKAKLLMKRDRAAYTELKQ 135
Y A L+K + L++
Sbjct: 130 YDA--LVKSSAVLLSALQK 146
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 34.8 bits (79), Expect = 0.034
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYK---DGFEIFSSRRQRIVTDNDISTLIIH- 513
+ H A + ++E V+ P V+W K R+ + +IS I+H
Sbjct: 19 SEHSILAGDPFELECPVK-YCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHF 77
Query: 514 -QAALMDEGEIKCTATNRAG----HSIT 536
D G +C+A ++ HS T
Sbjct: 78 EPVLPNDNGSYRCSANFQSNLIESHSTT 105
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 36.5 bits (84), Expect = 0.042
Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 8/120 (6%)
Query: 434 PGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG-IPTP-KVSWYKDGF 491
+PL T S + + +V T QV P +++W ++G
Sbjct: 202 VTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGN 261
Query: 492 EIFSSRRQRIVTDND-----ISTLIIHQAALMDEGEIKCTATNRAGHSITKAR-LRLEAP 545
+ + + D +S L+++ +A D+ ++ C + +++K+ L++
Sbjct: 262 VSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSTR 321
Score = 32.6 bits (74), Expect = 0.66
Identities = 21/161 (13%), Positives = 41/161 (25%), Gaps = 12/161 (7%)
Query: 441 LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEG-IPTP-KVSWYKDGFEIFSSRR 498
++ + P+A A V FT + G P + W+K+G E+ +
Sbjct: 109 TELSVRAKPSAPVVS---GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQT 165
Query: 499 QRIVTDND-----ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRLEAPPTIRLPKQ 553
ST + ++ C + + P
Sbjct: 166 NVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTL 225
Query: 554 YEDGLLFEMGEIIKLKVSMAGMPPPTAR--WLHNGEPLTSG 592
+ + + P + WL NG +
Sbjct: 226 EVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTE 266
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 33.9 bits (77), Expect = 0.059
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 366 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA 425
T+ W+ + + S Y + + S + ++ GL Y +
Sbjct: 25 TLIWKVSD-NESSSNYTYKIHVAGETDSSNLNVS-----EPRAVIPGLRSSTFYNITVCP 78
Query: 426 ENVVGFSEPGPLS 438
PG L
Sbjct: 79 VLGDIEGTPGFLQ 91
Score = 33.9 bits (77), Expect = 0.059
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 705 TIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVSGLEPGWRYQFRITA 764
T+ W+ + + S Y + + S + ++ GL Y +
Sbjct: 25 TLIWKVSD-NESSSNYTYKIHVAGETDSSNLNVS-----EPRAVIPGLRSSTFYNITVCP 78
Query: 765 ENVVGFSEPGPLS 777
PG L
Sbjct: 79 VLGDIEGTPGFLQ 91
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 36.4 bits (84), Expect = 0.060
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 28/148 (18%)
Query: 465 LEDEKVEFTVQVEGI----PTPKVSWYKDGFEIFSSRRQRIVTDND-----ISTLIIHQA 515
+ E T V + P K +WY DG ++ +++ + + +S L +
Sbjct: 332 MISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQ 391
Query: 516 ALMDEGEIKCTATNRAGH-----SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKV 570
+D E KC +N+A +I+KA+ + P LP E E+ K +V
Sbjct: 392 NWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRE--------EMTKNQV 443
Query: 571 SMA----GMPPP--TARWLHNGEPLTSG 592
S+ G P W NG+P +
Sbjct: 444 SLTCLVKGFYPSDIAVEWESNGQPENNY 471
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces
cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 36.1 bits (82), Expect = 0.063
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 1005 YSSEMSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQP 1050
++ E D+E+ +++ED + D+ ++ + E E+ D
Sbjct: 360 FTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFA 405
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 36.3 bits (82), Expect = 0.066
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 7/77 (9%)
Query: 576 PPPTARWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQ-----AHGVNSLGED 630
W L + + NL I + D G YQ ++ +
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVYQCLSEERVKNKTVFQV 617
Query: 631 VASFLVTVTDRPLPPGK 647
VA ++ V P P
Sbjct: 618 VAKHVLEVKVVPKPVVA 634
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 33.7 bits (77), Expect = 0.067
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 11/67 (16%)
Query: 580 ARWLHNGEPLTSGGRYEITHTDR-YLN-----LRISDARRADRGEYQAHGVNSLGEDVAS 633
+ +N + R YL L IS+ R+ D+G Y V E+
Sbjct: 47 LEYNYNSTKTIFESEF----KGRVYLEENNGALHISNVRKEDKGTYYMR-VLRETENELK 101
Query: 634 FLVTVTD 640
+ V D
Sbjct: 102 ITLEVFD 108
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.069
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 911 YPTLDEEEE------EEDRESL-VKDRESSVKGKEEEAKVIKD-DEYYENLGDVLTK 959
L +E E EE R+ L D S V +E K KD +E+ + + + K
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Score = 34.4 bits (78), Expect = 0.13
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 29/86 (33%)
Query: 22 WRSKLAMR---RDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVK-IQEWYR 77
WR + R D + QE + A K ++EW +
Sbjct: 90 WREEQRKRLQELDAAS---------------------KVMEQE---WREKAKKDLEEWNQ 125
Query: 78 NLQ-CMRQARQQYLALKHATLKQREE 102
+ + + A +Q +
Sbjct: 126 RQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 31.3 bits (70), Expect = 1.1
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 252 NLRKY--ERVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQAKKT 309
++RK+ E+ L +L + E+ + A K W + + + +E+ K +
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW--NQRQSE---QVEKNKINNRI 140
Query: 310 ADNQFENQAPLYVRLEEAI 328
AD F Q + I
Sbjct: 141 ADKAFYQQ-----PDADII 154
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 36.1 bits (84), Expect = 0.079
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 268 EQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQA 306
E+ R +K ++IQ + + +RKK+ + ++
Sbjct: 760 EKIRADKL-RAACIRIQKTIRGWLMRKKY---MRMRRGD 794
Score = 34.9 bits (81), Expect = 0.19
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 8/41 (19%)
Query: 29 RRDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSA 69
R ++ +R+ I IQK RG+L R++Y+ M+
Sbjct: 762 IRADK----LRAACIRIQKTIRGWL----MRKKYMRMRRGD 794
Score = 31.8 bits (73), Expect = 1.7
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 199 RANVAMRTQRERYVALRTATITIQTRFRAYLIAKNQRDEYAELKQA 244
RA ++ R LR A I IQ R +L R +Y +++
Sbjct: 752 RAGQVAYLEKIRADKLRAACIRIQKTIRGWL----MRKKYMRMRRG 793
Score = 31.1 bits (71), Expect = 2.6
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 172 RNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTA 217
R ++ LE +L+AA I IQ+ R R++Y+ +R
Sbjct: 752 RAGQVAYLEKIRADKLRAACIRIQKTIR----GWLMRKKYMRMRRG 793
Score = 29.5 bits (67), Expect = 7.4
Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 31 DEREFC--MIRSKTIVIQKY--------FRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQ 80
D ++ C ++ + KY FR + E+ ++++ ++IQ+ R
Sbjct: 723 DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIR--- 779
Query: 81 CMRQARQQYLALKHA 95
R++Y+ ++
Sbjct: 780 -GWLMRKKYMRMRRG 793
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 34.5 bits (79), Expect = 0.12
Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 10/136 (7%)
Query: 24 SKLAMRRDE-REFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCM 82
L D RS T+ F+ + K+ + L+ + + E +L+
Sbjct: 83 EGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAA 142
Query: 83 RQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQ 142
+++ + R++ L + L+ ++K+ ++
Sbjct: 143 EAGIRKFEDFLGSMENNRDKVLSPVDS---------GNKLVAEGNLYSDKIKEKVQLIED 193
Query: 143 RWRANLTMRKQRAHFL 158
R R N ++ + L
Sbjct: 194 RHRKNNEKAQEASVLL 209
Score = 31.8 bits (72), Expect = 0.93
Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 15/132 (11%)
Query: 46 QKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLK 105
Q + + + Q +L++ AV ++ +L Q QQ+ +K ++ + +
Sbjct: 3 QAFLQDL----DDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQR 58
Query: 106 LKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKAS 165
+K + K++ + Y L Q + W A M + R+H L +
Sbjct: 59 VKES--------GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTL---AQCL 107
Query: 166 VIQQWYRNTKLM 177
Q++ ++ K
Sbjct: 108 GFQEFQKDAKQA 119
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 33.4 bits (76), Expect = 0.13
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 593 GRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDV-ASFLVTVTDRPLPP 645
GR + L IS ++ D Y + G + + V D P
Sbjct: 64 GRVRLDPQS--GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP 115
Score = 31.8 bits (72), Expect = 0.35
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 484 VSWYKDGFEIFSSR-RQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGHSIT-KARLR 541
V W + F S+ + R+ D L I + D + G+ K +L+
Sbjct: 48 VEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQ 107
Query: 542 LEAP---PTIRLPK 552
+ P P I++ K
Sbjct: 108 VLDPVPKPVIKIEK 121
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 34.6 bits (79), Expect = 0.17
Identities = 25/176 (14%), Positives = 51/176 (28%), Gaps = 20/176 (11%)
Query: 433 EPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTP----KVSWYK 488
+ + +P +++ + T V + +++W +
Sbjct: 94 QGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSR 153
Query: 489 DGFEIFS-----SRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRA-----GHSITKA 538
+ + +QR T STL + ++ +C T+ S TK
Sbjct: 154 ASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKT 213
Query: 539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP--TARWLHNGEPLTSG 592
A P + E + + L + P + +WLHN L
Sbjct: 214 SGPR-AAPEVYAFATPEWPGSRDKRTLACL-IQ--NFMPEDISVQWLHNEVQLPDA 265
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 33.3 bits (76), Expect = 0.28
Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 22/125 (17%)
Query: 483 KVSWYKDGFEIFSSRRQRIVTDND-----ISTLIIHQAALMDEGEIKCTATNRAGHSITK 537
+ SW+ D E+ +++ + + +S L I ++ E KC + A + +
Sbjct: 38 QFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIE 97
Query: 538 ARLRLE----APPTIRLPKQYEDGLLFEMGEIIKLKVS----MAGMPPP--TARWLHNGE 587
+ P + ++ + + KVS + P T W NG+
Sbjct: 98 KTISKTKGRPKAPQVYTLPPPKEQMAKD-------KVSLTCMITDFFPEDITVEWESNGQ 150
Query: 588 PLTSG 592
P +
Sbjct: 151 PAENY 155
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 33.3 bits (76), Expect = 0.31
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 28/150 (18%)
Query: 463 TALEDEKVEFTVQVEGI----PTPKVSWYKDGFEIFSSRRQRIVTDND-----ISTLIIH 513
T + E T V + P K +WY DG E+ +++ + + +S L +
Sbjct: 14 TLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVL 73
Query: 514 QAALMDEGEIKCTATNRAGHS-----ITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKL 568
++ E KC +N+A + I+KA+ + P LP + E+ K
Sbjct: 74 HQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD--------ELTKN 125
Query: 569 KVS----MAGMPPPTA--RWLHNGEPLTSG 592
+VS + G P W NG+P +
Sbjct: 126 QVSLTCLVKGFYPSDIAVEWESNGQPENNY 155
>2y8y_A CSE3, TTHB192; hydrolase-RNA complex, ferredoxin-like; HET: DG;
1.44A {Thermus thermophilus} PDB: 2y8w_A* 2y9h_A* 1wj9_A
Length = 215
Score = 33.1 bits (75), Expect = 0.34
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 3/96 (3%)
Query: 352 QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS 411
+ + + R+ R EP PV+ LV+ + V +
Sbjct: 35 KAVSRALEEGRERLLWRLEPAR-GLEPPVV--LVQTLTEPDWSVLDEGYAQVFPPKPFHP 91
Query: 412 GLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR 447
L+PG R +FR+ A + G T +
Sbjct: 92 ALKPGQRLRFRLRANPAKRLAATGKRVALKTPAEKV 127
Score = 33.1 bits (75), Expect = 0.34
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 3/96 (3%)
Query: 691 QLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPYWVRASPHMVEDTELMVS 750
+ + + R+ R EP PV+ LV+ + V +
Sbjct: 35 KAVSRALEEGRERLLWRLEPAR-GLEPPVV--LVQTLTEPDWSVLDEGYAQVFPPKPFHP 91
Query: 751 GLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQR 786
L+PG R +FR+ A + G T +
Sbjct: 92 ALKPGQRLRFRLRANPAKRLAATGKRVALKTPAEKV 127
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 33.0 bits (75), Expect = 0.40
Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 28/148 (18%)
Query: 465 LEDEKVEFTVQVEGIPTP----KVSWYKDGFEIFSSRRQRIVTDND-----ISTLIIHQA 515
+ E T V + K +WY DG E+ +++ + + +S L +
Sbjct: 37 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQ 96
Query: 516 ALMDEGEIKCTATNRA-----GHSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKV 570
++ E KC +N+A +I+KA+ + P LP + E+ K +V
Sbjct: 97 DWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD--------ELTKNQV 148
Query: 571 S----MAGMPPPTA--RWLHNGEPLTSG 592
S + G P W NG+P +
Sbjct: 149 SLTCLVKGFYPSDIAVEWESNGQPENNY 176
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 32.6 bits (74), Expect = 0.43
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 10/100 (10%)
Query: 574 GMPPPTARWLHNGEPLTSGGRYEITHTDRYL--NLRISDARRADRGEYQAHGVNSLGEDV 631
LH R H D N IS + G Y+ +G +
Sbjct: 31 SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQ 90
Query: 632 ASFL-----VTVTDRPLPP---GKAKVVMTLGKSVTLSWS 663
S + + P + + G++VTLS S
Sbjct: 91 VSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCS 130
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble
protein, KD, protein engineering, immunotherapy,
immune-suppressor, immune system; 2.10A {Homo sapiens}
PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Length = 114
Score = 31.1 bits (71), Expect = 0.55
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 648 AKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGPPGKPQLL 693
LG++V L + + F+P G P L
Sbjct: 8 LDRTWNLGETVELKCQVLLSN----PTSGASWLFQPRGAAASPTFL 49
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 33.0 bits (75), Expect = 0.57
Identities = 30/165 (18%), Positives = 50/165 (30%), Gaps = 31/165 (18%)
Query: 313 QFENQAPLYVRLEEAITGLNVGTDLYCVIK-KPPGPPGKPQLLPDSPSLDRDVFTIRWEP 371
Q + Q P + + L VGT + K P + Q+ + D + W+
Sbjct: 2 QAQLQRPRTTGMLVIMASLMVGTPMAMAAKSSSLDAPQQLQVPTLA--YDESSIVLVWKA 59
Query: 372 PEYDGGSPVLGYLV--------------EHRRTGSPYW-------VRASPHMVEDTELMV 410
PE ++ Y + ++ PY H + V
Sbjct: 60 PEDTRK--IVDYQIFSAGKLLGKASDNNDNFSPAKPYIDHFYVNDKDNFQHKIVMQNFTV 117
Query: 411 SGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSF 455
GL+P YQF + A+ G LS ++ A
Sbjct: 118 IGLKPETSYQFTVKAQY-----ADGSLSVASKPITAKTSAKPQIV 157
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 32.7 bits (74), Expect = 0.59
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 482 PKVSWYKDGFEIFSSRRQRIVTDNDIS-----TLIIHQAALMDEGEIKCTATNRAGHSIT 536
+V ++ + + R + +L + L + GE +C +
Sbjct: 51 KEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQG 110
Query: 537 KARLRLEAPPTIRL 550
+L + A P RL
Sbjct: 111 TVQLEVVASPASRL 124
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 32.9 bits (75), Expect = 0.62
Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 7/132 (5%)
Query: 410 VSGLEPGWRYQFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEK 469
V+ + ++ ++ P + P L +
Sbjct: 200 VNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQ 259
Query: 470 VEFTVQVEGI--PTPKVSWYKDGFEIFSSRRQRIVTDND-----ISTLIIHQAALMDEGE 522
V T V+G V W +G + + V D+D S L + ++
Sbjct: 260 VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNV 319
Query: 523 IKCTATNRAGHS 534
C+ + A H+
Sbjct: 320 FSCSVMHEALHN 331
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 32.6 bits (73), Expect = 0.63
Identities = 15/111 (13%), Positives = 41/111 (36%), Gaps = 7/111 (6%)
Query: 962 SLPVNSDIQIKIDKPDDEPDYVIKGKYEVDNEMLLKRSKLKPQ----YSSEMSEASNITD 1017
+P ++ I+ + + +I+G YEV + ++ P Y + E+ + +
Sbjct: 245 KVPNSNVIKQLSKHEVAQLEMIIEGDYEVAL---TIKERIIPYAVDYYLGIIIESESNSI 301
Query: 1018 DEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFARNRHNKYIEDDQEE 1068
D + S + + + +D + ++ N+ E+ +
Sbjct: 302 VSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGAKS 352
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 32.3 bits (73), Expect = 0.70
Identities = 38/247 (15%), Positives = 83/247 (33%), Gaps = 28/247 (11%)
Query: 54 LMRKERQEYLAMK--SSAVKIQEWYRNLQCMRQARQQY---LALKHATLKQREEFLK--L 106
+ R ER E+LA K A + W + + + L A L++ E F
Sbjct: 6 IRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLA 65
Query: 107 KHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQK--- 163
H Q A+ L + D + C + +W T+ ++R L +K
Sbjct: 66 AHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLE 125
Query: 164 ------------ASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERY 211
A+ W + +H ++ I + +
Sbjct: 126 TIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGER 185
Query: 212 VALRTATITIQTRFRAYLIAKNQRDEYAELKQARRFRFKLNLRKYERVIELLKLKREQER 271
++ ++ ++Y I + + Y+ + +L K+++V +L+ ++ + +
Sbjct: 186 QSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMD-----ELR-TKWDKVKQLVPIRDQSLQ 239
Query: 272 QEKYRHQ 278
+E R
Sbjct: 240 EELARQH 246
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 31.8 bits (72), Expect = 0.77
Identities = 13/98 (13%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 57 KERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTL 116
++ + ++A + + + ++ +L + +++ A Q E+ L+
Sbjct: 129 EQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQA-------- 180
Query: 117 YKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQR 154
A L+ A ++ V RWR ++
Sbjct: 181 -FADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEK 217
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 63
Score = 29.3 bits (66), Expect = 0.89
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 11 LRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMR 56
+ ++Q R + R+ R+ +IQ R YL +
Sbjct: 3 IGEIVKVVQAAARGWV-ERKHFRQAREKSVSARIIQDNIRAYLEFK 47
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD polypeptide;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: a.143.1.2 PDB:
1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F 1pqv_F 1r5u_F 1r9s_F*
1r9t_F* 1sfo_F* 1twa_F* 1twc_F* 1i50_F* 1twg_F* 1twh_F*
1wcm_F 1y1v_F 1y1w_F 1y1y_F 1y77_F* ...
Length = 155
Score = 31.2 bits (70), Expect = 0.90
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 1005 YSSEMSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDR------DQPINFARNRH 1058
Y ++ + +D D E D ++E + E D + + + P +F ++
Sbjct: 4 YEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQ 63
Query: 1059 NKYIEDDQEEIYHPKLMT 1076
+ ++ I + T
Sbjct: 64 IRRKTLKEKAIPKDQRAT 81
Score = 29.6 bits (66), Expect = 3.2
Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 27/133 (20%)
Query: 854 DNEDDYDIVETNEHTGTGAPSDNENESDYFPEKTIDESVYGYDTIVYGYDSDDLDRHYPT 913
D E+ ++ NEN D+ E DE Y ++ D +
Sbjct: 3 DYEEAFN-------------DGNENFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIV 49
Query: 914 LDEEEEEEDRESLVKDRESSVKGKEEEAKVIKDDEY--------YENLGDVLTKKYSLPV 965
E+ ++ ++ K + K I D+ YE + T+ + +
Sbjct: 50 TGGNGPEDFQQH------EQIRRKTLKEKAIPKDQRATTPYMTKYERARILGTRALQISM 103
Query: 966 NSDIQIKIDKPDD 978
N+ + + ++ D
Sbjct: 104 NAPVFVDLEGETD 116
Score = 28.9 bits (64), Expect = 4.9
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 1009 MSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFARNRHNKYIEDDQEE 1068
MS+ +D +E E+ FD + ++ EE + + N + E
Sbjct: 1 MSDYEEAFNDGNENFED--FDVEHFSDEETYEEKPQFKDGE--TTDANGKTIVTGGNGPE 56
Query: 1069 IY 1070
+
Sbjct: 57 DF 58
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A {Yersinia
enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A* 1ytn_A 1ytw_A
2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A* 1ypt_A* 3blt_A*
1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A* 1pa9_A* 1yts_A
Length = 306
Score = 32.0 bits (73), Expect = 0.91
Identities = 8/49 (16%), Positives = 11/49 (22%)
Query: 1009 MSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFARNR 1057
+ S ++ E E S L D NR
Sbjct: 18 ATAPSTVSPYGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNR 66
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 31.8 bits (72), Expect = 0.97
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 6/91 (6%)
Query: 581 RWLHNGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLG--EDVASFLVTV 638
+ N G R + + I G YQ + + V
Sbjct: 42 MIIKNSTYREIGRRLKFWNETDP-EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVV 100
Query: 639 TDRPLPPG---KAKVVMTLGKSVTLSWSEPE 666
T P +V+ G++++L+ S
Sbjct: 101 TGLYGKPFLSADRGLVLMPGENISLTCSSAH 131
Score = 28.7 bits (64), Expect = 8.5
Identities = 14/114 (12%), Positives = 29/114 (25%), Gaps = 9/114 (7%)
Query: 420 QFRITAENVVGFSEPGPLSEPLTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGI 479
+++ S+ L + F+ A + E + T I
Sbjct: 78 RYQCQYRIGHYRFRY---SDTLELVVTGLYG--KPFLSADRGLVLMPGENISLTCSSAHI 132
Query: 480 PTPKVSWYKDGFEIFSSRRQRIVTDNDISTLIIHQAALMDEGEIKCTATNRAGH 533
P + S K+G + + + + L G +C
Sbjct: 133 PFDRFSLAKEG----ELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSP 182
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 32.3 bits (73), Expect = 1.0
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 24/125 (19%)
Query: 480 PTPKVSWYKDGFEIFSSRRQRIVTDND-----ISTLIIHQAALMDEGEIKCTATNRAG-- 532
P + SW+ D E+ +++ Q + +S L I ++ E KC + A
Sbjct: 375 PEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 434
Query: 533 ---HSITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVS----MAGMPPP--TARWL 583
+I+K + R +AP +P E ++ K KVS + P T W
Sbjct: 435 PIEKTISKTKGRPKAPQLYTIPPPKE--------QMAKDKVSLTCMITDFFPEDITVEWQ 486
Query: 584 HNGEP 588
NG+P
Sbjct: 487 WNGQP 491
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A
3tuy_A* 1scm_A
Length = 64
Score = 29.0 bits (65), Expect = 1.2
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 11 LRAKTILIQTLWRSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMR 56
L + Q R L +R+ ++ R VIQ+ R +L++R
Sbjct: 5 LSKIISMFQAHIRGYL-IRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49
Score = 26.7 bits (59), Expect = 7.7
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 30 RDEREFCMIRSKTIVIQKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQ 87
RDER + + Q + RGY L+RK ++ + IQ RN++ R
Sbjct: 1 RDER----LSKIISMFQAHIRGY-LIRKAYKKLQDQRIGLSVIQ---RNIRKWLVLRN 50
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 30.3 bits (68), Expect = 1.3
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 9/60 (15%)
Query: 593 GRYEIT--HTDRYLNLRISDARRADRGEYQAHGVNSLGEDVASFL-----VTVTDRPLPP 645
R+ + + L I DAR +D G Y G ++ V VT P
Sbjct: 75 DRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRM--EKGNIKWNYKYDQLSVNVTALTHRP 132
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.3
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 5/28 (17%)
Query: 533 HSITK--ARLRLEAP---PTIRLPKQYE 555
++ K A L+L A P + + E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 3.5
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 20/50 (40%)
Query: 940 EAKVIKDDEYYENLGDVLTKKYSLPVNSDIQIKIDKPDDEPDYVIKGKYE 989
E + +K + +L K Y+ D P IK E
Sbjct: 18 EKQALKKLQ--ASL-----KLYA-------------DDSAPALAIKATME 47
>3h0g_F DNA-directed RNA polymerases I, II, and III subunit rpabc2;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 142
Score = 30.4 bits (68), Expect = 1.5
Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 2/69 (2%)
Query: 1008 EMSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFARNRHNKYIEDDQE 1067
E EA + EE+ ++ DE + + + + + +
Sbjct: 5 EEDEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPST--TVITEDVASSKTAQSGK 62
Query: 1068 EIYHPKLMT 1076
+ T
Sbjct: 63 AVAKEDRTT 71
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 31.5 bits (70), Expect = 1.6
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 6/117 (5%)
Query: 481 TPKVSWYKDGFEIFSSRRQRIVTD--NDISTLIIHQAALMDEGEIKCTATNRAGHSITKA 538
++ ++G F++ T + + EG T
Sbjct: 225 NGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTL 284
Query: 539 RLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPPTA---RWLHNGEPLTSG 592
L + PP + L +L ++ P W G P
Sbjct: 285 ELAVYKPPKVSL-MPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRS 340
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 30.2 bits (67), Expect = 1.8
Identities = 18/101 (17%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 996 LKRSKLKPQYSSEMSEASNITDDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFAR 1055
LK + + ++E + + E +E++ + DE +++ +E+ D+DD +
Sbjct: 13 LKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDED------ 66
Query: 1056 NRHNKYIEDDQEEIYHPKLMTMRSSQEDLDEAPPVPEHLDD 1096
E+++EE+ L +R ++ +E + H ++
Sbjct: 67 -------EEEEEEVTDQ-LEDLREHFKNTEEGKALVHHYEE 99
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 31.2 bits (70), Expect = 1.8
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 1017 DDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQP 1050
+DE+ E + E + + E ++P
Sbjct: 224 EDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEP 257
Score = 30.1 bits (67), Expect = 4.2
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 1017 DDEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQP 1050
D EDEE E + +D+ +
Sbjct: 222 DLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDE 255
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 30.2 bits (67), Expect = 1.9
Identities = 17/102 (16%), Positives = 25/102 (24%), Gaps = 1/102 (0%)
Query: 441 LTVTYQRSPAAAPSFIRALHDTTALEDEKVEFTVQVEGIPTPKVSWYKDGFEIFSSRRQR 500
L +YQ + P I L + KV E F R
Sbjct: 24 LPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGR 83
Query: 501 I-VTDNDISTLIIHQAALMDEGEIKCTATNRAGHSITKARLR 541
V + TL + D G C + + +
Sbjct: 84 ASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAK 125
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 30.7 bits (69), Expect = 2.1
Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 26/147 (17%)
Query: 465 LEDEKVEFTVQVEGIPTP----KVSWYKDGFEIFSSRRQRIVTDND-----ISTLIIHQA 515
+ + T V + ++SW+ + E+ +++ Q D + +STL I
Sbjct: 24 MISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQ 83
Query: 516 ALMDEGEIKCTATNRAGHSITKARLRLE----APPTIRLPKQYEDGLLFEMGEIIKLKVS 571
M E KC N+ S + + P + + + ++ + VS
Sbjct: 84 DWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAE-------QLSRKDVS 136
Query: 572 ----MAGMPPP--TARWLHNGEPLTSG 592
+ G P + W NG +
Sbjct: 137 LTCLVVGFNPGDISVEWTSNGHTEENY 163
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 30.7 bits (69), Expect = 2.5
Identities = 31/189 (16%), Positives = 53/189 (28%), Gaps = 27/189 (14%)
Query: 576 PPPTARWLHNGEPLTSGGRYEITHTDRYL-NLRISDARRADRGEYQAHGVNSLGEDVASF 634
G+ + H N I + G Y+ +G + S
Sbjct: 33 RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSA 92
Query: 635 L-----VTVTDRPLPP---GKAKVVMTLGKSVTLSWSEPEDDGGCKIGNYIVEYFRPPGP 686
+ +T P + + G+SVTLS S +Y + + G
Sbjct: 93 PSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRS--------SYDMYHLSREGE 144
Query: 687 PGKPQLLPDSPSLDRDVFTIRWEPPEYDGGSPVLGYLVEHRRTGSPY-WVRASPHMVEDT 745
+ P ++ P GG+ Y SPY W +S +
Sbjct: 145 A-HERRFSAGPKVNGTFQADFPLGPATHGGT----YRCFGSFRDSPYEWSNSSDPL---- 195
Query: 746 ELMVSGLEP 754
+ V+G
Sbjct: 196 LVSVTGNPS 204
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 30.8 bits (70), Expect = 3.1
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 3/78 (3%)
Query: 1017 DDEDEEDEEDSFDFDELFEDN-PEEEYDEDDRDQP-INFARNRHNKYIEDD-QEEIYHPK 1073
D D D+ F + F+D ++EY+ + P + + + + ++
Sbjct: 5 DYSDGADDMPDFHDEGEFDDYLNDDEYELMNEVFPTLKAQLQDYQGWDNLSLKLALFDNN 64
Query: 1074 LMTMRSSQEDLDEAPPVP 1091
+ E
Sbjct: 65 FDLESTLAELKKTLKKKK 82
>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide;
transcription; NMR {Homo sapiens} SCOP: a.143.1.2
Length = 127
Score = 29.2 bits (65), Expect = 3.1
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 1020 DEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFARNRHNKYIEDDQEEIYHPKL 1074
D ED D DFD++ ED ++ + + + N + + +Q+ I P +
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYM 57
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 30.9 bits (70), Expect = 3.2
Identities = 23/154 (14%), Positives = 48/154 (31%), Gaps = 8/154 (5%)
Query: 902 YDSDDLDRHYPTLDEEEEEEDRESLVKDRESSVKGKEEEAKVIKDDEYYENLGDVL---T 958
Y++ L +H P + + E ++ + E + D +++ +L
Sbjct: 430 YETLVLMKHLPYMPILRRDRSPEMTARE----IMHPIEGEPHLFPDSEPQHIKGILEKFP 485
Query: 959 KKYSLPV-NSDIQIKIDKPDDEPDYVIKGKYEVDNEMLLKRSKLKPQYSSEMSEASNITD 1017
+ PV +++ + E ++ E E + L ++++SE
Sbjct: 486 NRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLV 545
Query: 1018 DEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPI 1051
DE E S P PI
Sbjct: 546 DETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPI 579
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 30.4 bits (68), Expect = 3.7
Identities = 19/176 (10%), Positives = 41/176 (23%), Gaps = 19/176 (10%)
Query: 432 SEPGPLSEPLTVTYQRSPAAAPS-FIRALHDTTALEDEKVEFTVQVEGIPTP--KVSWYK 488
+ S ++ +K FT V G ++W
Sbjct: 276 EKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEV 335
Query: 489 DGFEIFSSRRQRIVTDND------ISTLIIHQAALMDEGEIKCTATNRAGHSITKARLRL 542
G + ++ + S L + ++ + CT + + LR
Sbjct: 336 AGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQRLMALRE 395
Query: 543 EAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGM------PPPTARWLHNGEPLTSG 592
A L + + + P WL + + +
Sbjct: 396 PAAQAPVKLSLN----LLASSDPPEAASWLLCEVSGFSPPNILLMWLEDQREVNTS 447
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 29.8 bits (67), Expect = 4.0
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 8/95 (8%)
Query: 576 PPPTAR-WLH-NGEPLTSGGRYEITHTDRYLNLRISDARRADRGEYQAHGVNSLGEDVAS 633
L P + + ++ I G Y+ + + +G S
Sbjct: 29 TLEAREYRLDKEESPAPWDRQNPLEPKNKA-RFSIPSMTEDYAGRYRCYYRSPVGWSQPS 87
Query: 634 --FLVTVTDRPLPPG---KAKVVMTLGKSVTLSWS 663
+ +T P ++T GKSVTL
Sbjct: 88 DPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQ 122
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 28.7 bits (63), Expect = 4.1
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 17/93 (18%)
Query: 458 ALHDTTALEDEKVEFTVQVEGIPTPKVSWYK----------DGFEIFSSRRQRIVTDNDI 507
+ H E K+E V+ + P V+W K G ++++S + +
Sbjct: 22 SKHSAWTGELFKIECPVKY-CVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEEN--RSVPV 78
Query: 508 STLIIHQAALMDEGEIKCTATNRAG----HSIT 536
L L D G C+ + HS+T
Sbjct: 79 FVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVT 111
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 30.3 bits (68), Expect = 4.2
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 16/121 (13%)
Query: 483 KVSWYKDGFEIFSSRRQRIVTDND-----ISTLIIHQAALMDEGEIKCTATNRAGH---- 533
++SW+ + E+ +++ Q D + +S L I M E KC N+
Sbjct: 275 QISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIE 334
Query: 534 -SITKARLRLEAPPTIRLPKQYEDGLLFEMGEIIKLKVSMAGMPPP--TARWLHNGEPLT 590
+I+K + + AP LP E+ + + L + P W +NG+
Sbjct: 335 RTISKPKGSVRAPQVYVLPPPEEE----MTKKQVTLTCMVTDFMPEDIYVEWTNNGKTEL 390
Query: 591 S 591
+
Sbjct: 391 N 391
>3o4z_A Telomere length regulation protein TEL2; heat like helical repeats,
protein binding; 3.10A {Saccharomyces cerevisiae}
Length = 647
Score = 30.1 bits (67), Expect = 4.3
Identities = 5/47 (10%), Positives = 12/47 (25%)
Query: 1018 DEDEEDEEDSFDFDELFEDNPEEEYDEDDRDQPINFARNRHNKYIED 1064
E F + D+ Q + + +++D
Sbjct: 352 SGGHLKYESDFKINIPNVKFESNSDDKIIDFQSLKREIVKRIVFLKD 398
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 29.9 bits (67), Expect = 4.8
Identities = 11/110 (10%), Positives = 34/110 (30%), Gaps = 11/110 (10%)
Query: 63 LAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLYKAKLL 122
++ K E ++ + R ++ T +E + +A + L
Sbjct: 126 ISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAF--------IERL 177
Query: 123 MKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYR 172
+ + + + + + W L + R L + + +++
Sbjct: 178 IDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLL---AASYDLHRYFY 224
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3;
alpha-beta plait, trapp complex, palmitoylated,
transport PR; HET: PLM; 1.55A {Homo sapiens} PDB:
2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A*
1wc9_A* 2c0j_A*
Length = 200
Score = 29.2 bits (65), Expect = 5.4
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 258 RVIELLKLKREQERQEKYRHQCAVKIQSLWKMYRVRKKFADIIEQKKQAKKTADNQFENQ 317
R+IE + R +R V + +KMY I + + N
Sbjct: 63 RLIEDFLARSNVGRCHDFRETADVIAKVAFKMY--LGITPSITNWSPAGDEFSLILENNP 120
Query: 318 APLYVRLEEAITGLN 332
+V L + + L
Sbjct: 121 LVDFVELPDNHSSLI 135
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 28.9 bits (64), Expect = 6.4
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 42 TIVIQKYFRGYLLMRKERQ-EYLAMKSSAVKIQEW 75
+VIQ+ FR +LL R + +L + + + E
Sbjct: 133 AMVIQRAFRRHLLQRSLKHASFLFRQQAGSGLSEE 167
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 29.5 bits (66), Expect = 6.5
Identities = 30/176 (17%), Positives = 63/176 (35%), Gaps = 25/176 (14%)
Query: 1 MQQCRSDYLNLRAKTILIQTLW---RSKLAMRRDEREFCMIRSKTIVIQKYFRGYLLMRK 57
M D ++ K I + +S A RR + + ++FR
Sbjct: 70 MTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESH------RLHQFFRDM----D 119
Query: 58 ERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLKLKHATIAIQTLY 117
+ + ++ K V +++ R+L ++ R+++ L+ A L E ++ L
Sbjct: 120 DEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLE-AELAAHEPAIQ--------GVLD 170
Query: 118 KAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQRAHFLLMKQKASVIQQWYRN 173
K L + E++Q W+ + R L +++ QQ+ N
Sbjct: 171 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL---EESLEYQQFVAN 223
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative,
center for eukaryotic structural genomics, CESG,
structural genomics; NMR {Arabidopsis thaliana}
Length = 150
Score = 28.8 bits (64), Expect = 6.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1018 DEDEEDEEDSFDFDELFEDNPEEEYDEDD 1046
DEDEE ++ DE N + E +DD
Sbjct: 108 DEDEEVNSETASDDESAFVNQDSESSDDD 136
>2jyn_A UPF0368 protein YPL225W; novel fold, YST0336, YT51, ontario centre
for structural proteomics, OCSP, PSI, protein structure
initiative; NMR {Saccharomyces cerevisiae}
Length = 146
Score = 28.4 bits (63), Expect = 7.9
Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 27/115 (23%)
Query: 970 QIKIDKPDDE---------PDYVIKGKYEVDNEMLLKRSKLKPQYSSEMSEASNITDDED 1020
++++ K DDE P+Y + + E LK + K ++ + +D
Sbjct: 41 KLRLTKFDDEIYENFMERFPEYKDVERVKKFTEEELKTKEAKERWRKFFTIFEKKIED-- 98
Query: 1021 EEDEEDSFDFDELFEDNPEEEYDEDD-----RDQ--PINFARNR--HNKYIEDDQ 1066
++F L + EY + R Q ARN+ N +I +
Sbjct: 99 -------YNFGTLLRTDASAEYGQFTTCFVVRLQFYAFEIARNKHGLNDWIVGQK 146
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional,
carboh binding, peptide binding, multi-compartmental,
chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A*
3o0v_A* 3o0x_A*
Length = 265
Score = 28.9 bits (64), Expect = 7.9
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 955 DVLTKKYSLPVNSD--IQIKIDKP-----------DDEPDYVIKGKYEVDNEMLLKRSKL 1001
D T Y+L V D ++KID D P Y DN +L L
Sbjct: 157 DEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPGSGDPSIYAYDNFGVLGL-DL 215
Query: 1002 KPQYSSEMSEASNITDDED--EEDEEDSFDFDELFEDNPEEEYDEDDR 1047
S + + IT+DE EE +++ + E +++ DE+ R
Sbjct: 216 WQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQR 263
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 28.7 bits (64), Expect = 8.2
Identities = 24/180 (13%), Positives = 58/180 (32%), Gaps = 20/180 (11%)
Query: 46 QKYFRGYLLMRKERQEYLAMKSSAVKIQEWYRNLQCMRQARQQYLALKHATLKQREEFLK 105
++F ++ ++ ++ QE R++ + + + + + + F
Sbjct: 7 FRFFSMA----RDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSA 62
Query: 106 LKHATIAIQTLYKAKLLMKRDRAAYTELKQACVSVQQRWRANLTMRKQR-------AHFL 158
+ L++R A E+++ V R + + R
Sbjct: 63 CLEL---------GESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVC 113
Query: 159 LMKQKASVIQQWYRNTKLMRLEASYLHELKAATITIQRRYRANVAMRTQRERYVALRTAT 218
+ ASV + W + + H + + I+R + + ER+ AL T
Sbjct: 114 QFSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPT 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.393
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,510,920
Number of extensions: 1126742
Number of successful extensions: 5286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3968
Number of HSP's successfully gapped: 1046
Length of query: 1101
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 997
Effective length of database: 3,798,009
Effective search space: 3786614973
Effective search space used: 3786614973
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.5 bits)