BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8140
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2
Length = 360
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 12 MRDIAFSR-YIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGAT 70
+R+ SR IKEK ++ DSEI T L SL+CPLGKMR+ P +A TC HLQCFD A
Sbjct: 185 IRNPDHSRALIKEKLTADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAAL 244
Query: 71 FIKMNELKPKWNCPVCDK 88
+++MNE KP W CPVCDK
Sbjct: 245 YLQMNEKKPTWICPVCDK 262
>pdb|3I2D|A Chain A, Crystal Structure Of S. Cerevisiae Sumo E3 Ligase Siz1
Length = 371
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 20 YIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKP 79
Y+K+ + + + T SL CP+ RM +P+K+ C HLQCFD F+ P
Sbjct: 228 YLKKTLREDEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIP 287
Query: 80 KWNCPVC 86
W CPVC
Sbjct: 288 TWQCPVC 294
>pdb|2IDR|A Chain A, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
pdb|2IDR|B Chain B, Crystal Structure Of Translation Initiation Factor Eif4e
From Wheat
Length = 177
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 54 PTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLC 96
P+K + A CF N+++PKW P+C G + C
Sbjct: 50 PSKLNVGADFHCF-------KNKIEPKWEDPICANGGKWTISC 85
>pdb|3LA1|A Chain A, High Resolution Crystal Structure Of Cypet Mutant A167i
Length = 237
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 1 MGSIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTC 60
G IV ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 9 FGGIVPILVELEGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTL 65
Query: 61 AHLQCF 66
+QCF
Sbjct: 66 X-VQCF 70
>pdb|3GEX|A Chain A, 1.6 Angstrom Crystal Structure Of Fluorescent Protein
Cypet
pdb|3I19|A Chain A, 1.4 Angstrom Crystal Structure Of Fluorescent Protein
Cypet
Length = 242
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 1 MGSIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTC 60
G IV ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 14 FGGIVPILVELEGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTL 70
Query: 61 AHLQCF 66
+QCF
Sbjct: 71 X-VQCF 75
>pdb|3AKO|A Chain A, Crystal Structure Of The Reassembled Venus
pdb|3AKO|C Chain C, Crystal Structure Of The Reassembled Venus
pdb|3AKO|E Chain E, Crystal Structure Of The Reassembled Venus
pdb|3AKO|G Chain G, Crystal Structure Of The Reassembled Venus
Length = 173
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT LIC GK+ + +PT +T
Sbjct: 31 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKLICTTGKLPVPWPTLVTTLX- 86
Query: 63 LQCF 66
LQCF
Sbjct: 87 LQCF 90
>pdb|1MYW|A Chain A, Crystal Structure Of A Yellow Fluorescent Protein With
Improved Maturation And Reduced Environmental
Sensitivity
Length = 237
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT LIC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKLICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
LQCF
Sbjct: 67 LQCF 70
>pdb|3UFZ|A Chain A, Crystal Structure Of A Trp-Less Green Fluorescent
Protein Translated By The Universal Genetic Code
pdb|3UG0|A Chain A, Crystal Structure Of A Trp-Less Green Fluorescent
Protein Translated By The Simplified Genetic Code
Length = 227
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + FPT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPFPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|1CV7|A Chain A, Crystal Structure Of Enhanced Cyan-Emission Variant Of
Gfp
Length = 226
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ R+ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHRF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|3V3D|A Chain A, Crystal Structure Of An Eyfp Single Mutant
Length = 257
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 31 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 86
Query: 63 LQCF 66
LQCF
Sbjct: 87 LQCF 90
>pdb|3ED8|A Chain A, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
pdb|3ED8|B Chain B, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
pdb|3ED8|C Chain C, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
pdb|3ED8|D Chain D, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
pdb|3ED8|E Chain E, Application Of The Superfolder Yfp Bimolecular
Fluorescence Complementation For Studying
Protein-protein Interactions In Vitro
Length = 260
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVRGEGEGDATIGKLTLKFICTTGKLPVPWPTLVTTLX- 65
Query: 63 LQCF 66
LQCF
Sbjct: 66 LQCF 69
>pdb|1B2P|A Chain A, Native Mannose-Specific Bulb Lectin From Scilla
Campanulata (Bluebell) At 1.7 Angstroms Resolution
pdb|1B2P|B Chain B, Native Mannose-Specific Bulb Lectin From Scilla
Campanulata (Bluebell) At 1.7 Angstroms Resolution
Length = 119
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 67 DGATFIKMNELKPKWNCPVCDKVGHLILL 95
DG + NE W PV K GH +L+
Sbjct: 70 DGVLVVITNENVTVWQSPVAGKAGHYVLV 98
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT LIC GK+ + +PT +T L
Sbjct: 135 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKLICTTGKLPVPWPTLVTTLX-L 190
Query: 64 QCF 66
+CF
Sbjct: 191 KCF 193
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT LIC GK+ + +PT +T L
Sbjct: 135 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKLICTTGKLPVPWPTLVTTLX-L 190
Query: 64 QCF 66
+CF
Sbjct: 191 KCF 193
>pdb|1YFP|A Chain A, Structure Of Yellow-Emission Variant Of Gfp
pdb|1YFP|B Chain B, Structure Of Yellow-Emission Variant Of Gfp
Length = 225
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 8 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 63
Query: 63 LQCF 66
LQCF
Sbjct: 64 LQCF 67
>pdb|1RRX|A Chain A, Crystallographic Evidence For Isomeric Chromophores In
3- Fluorotyrosyl-Green Fluorescent Protein
Length = 226
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 9 GVVPILVELDGDVNGHKF---SVSGEGEGDATXGKLTLKFICTTGKLPVPWPTLVTTLX- 64
Query: 63 LQCF 66
+QCF
Sbjct: 65 VQCF 68
>pdb|2YFP|A Chain A, Structure Of Yellow-Emission Variant Of Gfp
Length = 236
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
LQCF
Sbjct: 66 LQCF 69
>pdb|1GFL|A Chain A, Structure Of Green Fluorescent Protein
pdb|1GFL|B Chain B, Structure Of Green Fluorescent Protein
Length = 238
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T ++
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSY 66
Query: 63 -LQCF 66
+QCF
Sbjct: 67 GVQCF 71
>pdb|1YHH|A Chain A, Uncyclized Precursor Structure Of S65a Y66s G67a Gfp
Variant
Length = 239
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T A
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLAS 67
Query: 63 -LQCF 66
+QCF
Sbjct: 68 AVQCF 72
>pdb|1F09|A Chain A, Crystal Structure Of The Green Fluorescent Protein (Gfp)
Variant Yfp-H148q With Two Bound Iodides
pdb|1F0B|A Chain A, Crystal Structure Of The Green Fluorescent Protein (Gfp)
Variant Yfp-H148q
Length = 236
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
LQCF
Sbjct: 66 LQCF 69
>pdb|4GF6|B Chain B, Crystal Structure Of Gfp With Cuprum Bound At The
Incorporated Metal Chelating Amino Acid Pyz151
Length = 246
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T ++
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSY 66
Query: 63 -LQCF 66
+QCF
Sbjct: 67 GVQCF 71
>pdb|1QY3|A Chain A, Crystal Structure Of Precyclized Intermediate For The
Green Fluorescent Protein R96a Variant (B)
Length = 229
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTY 66
Query: 63 -LQCF 66
+QCF
Sbjct: 67 GVQCF 71
>pdb|4GES|B Chain B, Crystal Structure Of Gfp-Tyr151pyz With An Unnatural
Amino Acid Incorporation
Length = 246
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T ++
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSY 66
Query: 63 -LQCF 66
+QCF
Sbjct: 67 GVQCF 71
>pdb|1QXT|A Chain A, Crystal Structure Of Precyclized Intermediate For The
Green Fluorescent Protein R96a Variant (A)
Length = 230
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTY 67
Query: 63 -LQCF 66
+QCF
Sbjct: 68 GVQCF 72
>pdb|2AWJ|A Chain A, Gfp R96m Pre-Cyclized Intermediate In Chromophore
Formation
Length = 230
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTY 67
Query: 63 -LQCF 66
+QCF
Sbjct: 68 GVQCF 72
>pdb|1YHI|A Chain A, Uncyclized Precursor Structure Of S65a Y66s R96a Gfp
Variant
Length = 239
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T A
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFAS 67
Query: 63 -LQCF 66
+QCF
Sbjct: 68 GVQCF 72
>pdb|3EVP|A Chain A, Crystal Structure Of Circular-Permutated Egfp
Length = 243
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 111 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 166
Query: 63 LQCF 66
+QCF
Sbjct: 167 VQCF 170
>pdb|2B3P|A Chain A, Crystal Structure Of A Superfolder Green Fluorescent
Protein
Length = 244
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVRGEGEGDATNGKLTLKFICTTGKLPVPWPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|2YE1|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein
Mturquoise-Gl (K206a Mutant)
Length = 243
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|3ZTF|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein
Mturquoise2 (K206a Mutant)
Length = 243
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|2YDZ|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein Scfp3a
(K206a Mutant)
pdb|2YE0|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein
Mturquoise (K206a Mutant)
Length = 243
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|4AR7|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein
Mturquoise
Length = 243
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|2Q57|A Chain A, X-Ray Structure Of Cerulean Gfp: A Tryptophan-Based
Chromophore Useful For Fluorescence Lifetime Imaging
Length = 254
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 28 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 83
Query: 63 LQCF 66
+QCF
Sbjct: 84 VQCF 87
>pdb|2OKW|A Chain A, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|B Chain B, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|C Chain C, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|D Chain D, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|E Chain E, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|F Chain F, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKY|A Chain A, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKY|B Chain B, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
Length = 236
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|4AS8|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein Cerulean
Cryoprotected With Ethylene Glycol
Length = 243
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|2WSO|A Chain A, Structure Of Cerulean Fluorescent Protein At
Physiological Ph
Length = 237
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|2H6V|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins- E2(Gfp) Apo Form
pdb|2O24|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins: E2(Gfp)-Cl Complex
pdb|2O29|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins: E2(Gfp)-Br Complex
pdb|2O2B|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins: E2(Gfp)-I Complex
Length = 242
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 16 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 71
Query: 63 LQCF 66
+QCF
Sbjct: 72 VQCF 75
>pdb|1QYO|A Chain A, Anaerobic Precylization Intermediate Crystal Structure
For S65g Y66g Gfp Variant
Length = 238
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKAST-CA 61
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLGG 66
Query: 62 HLQCF 66
+QCF
Sbjct: 67 GVQCF 71
>pdb|2Y0G|A Chain A, X-Ray Structure Of Enhanced Green Fluorescent Protein
(Egfp)
Length = 250
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 24 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 79
Query: 63 LQCF 66
+QCF
Sbjct: 80 VQCF 83
>pdb|1Q73|A Chain A, S65t Q80r Y145c T203c Green Fluorescent Protein (Gfp) Ph
8.5
Length = 236
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|4EUL|A Chain A, Crystal Structure Of Enhanced Green Fluorescent Protein
To 1.35a Resolution Reveals Alternative Conformations
For Glu222
Length = 237
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|3VHT|B Chain B, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion
Protein In Complex With Ubiquitin
Length = 271
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 13 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 68
Query: 63 LQCF 66
+QCF
Sbjct: 69 VQCF 72
>pdb|3LVA|A Chain A, Crystal Structure Of Colorless Gfp-Like Protein From
Aequore Coerulescens
pdb|3LVA|B Chain B, Crystal Structure Of Colorless Gfp-Like Protein From
Aequore Coerulescens
Length = 236
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
IV ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GIVPILIELNGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|3OSR|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
pdb|3OSR|B Chain B, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
Length = 653
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 459 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX-V 514
Query: 64 QCF 66
QCF
Sbjct: 515 QCF 517
>pdb|3OSQ|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 175
Length = 661
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 321 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX-V 376
Query: 64 QCF 66
QCF
Sbjct: 377 QCF 379
>pdb|3OGO|A Chain A, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|B Chain B, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|C Chain C, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|D Chain D, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
Length = 247
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 21 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 76
Query: 63 LQCF 66
+QCF
Sbjct: 77 VQCF 80
>pdb|2WSN|A Chain A, Structure Of Enhanced Cyan Fluorescent Protein At
Physiological Ph
Length = 237
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|1QYF|A Chain A, Crystal Structure Of Matured Green Fluorescent Protein
R96a Variant
Length = 228
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 170 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX-V 225
Query: 64 QCF 66
QCF
Sbjct: 226 QCF 228
>pdb|3EKJ|A Chain A, Calcium-Free Gcamp2 (Calcium Binding Deficient Mutant)
Length = 449
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 169 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX-V 224
Query: 64 QCF 66
QCF
Sbjct: 225 QCF 227
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 168 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX-V 223
Query: 64 QCF 66
QCF
Sbjct: 224 QCF 226
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 168 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX-V 223
Query: 64 QCF 66
QCF
Sbjct: 224 QCF 226
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 168 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX-V 223
Query: 64 QCF 66
QCF
Sbjct: 224 QCF 226
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 169 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX-V 224
Query: 64 QCF 66
QCF
Sbjct: 225 QCF 227
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 169 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX-V 224
Query: 64 QCF 66
QCF
Sbjct: 225 QCF 227
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 169 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX-V 224
Query: 64 QCF 66
QCF
Sbjct: 225 QCF 227
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 169 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX-V 224
Query: 64 QCF 66
QCF
Sbjct: 225 QCF 227
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 169 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX-V 224
Query: 64 QCF 66
QCF
Sbjct: 225 QCF 227
>pdb|2AWK|A Chain A, Gfp R96m Mature Chromophore
Length = 228
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 132 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX-V 187
Query: 64 QCF 66
QCF
Sbjct: 188 QCF 190
>pdb|2AWL|A Chain A, Mature R96k Gfp Mutant
Length = 228
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|1S6Z|A Chain A, Enhanced Green Fluorescent Protein Containing The Y66l
Substitution
pdb|1Z1P|A Chain A, Y66l Variant Of Enhanced Green Fluorescent Protein With
412- Nm Absorbing Chromophore
pdb|1Z1Q|A Chain A, Y66l Variant Of Enhanced Green Fluorescent Protein With
374- Nm Absorbing Chromophore
Length = 236
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|1JBY|A Chain A, Crystal Structure Analysis Of A Dual-Wavelength Emission
Green Fluorescent Protein Variant At Low Ph
pdb|1JBZ|A Chain A, Crystal Structure Analysis Of A Dual-Wavelength Emission
Green Fluorescent Protein Variant At High Ph
Length = 236
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|1EMM|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|2EMD|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|2EMN|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
Length = 237
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|1OXD|A Chain A, Expansion Of The Genetic Code Enables Design Of A Novel
"gold" Class Of Green Fluorescent Proteins
pdb|1OXE|A Chain A, Expansion Of The Genetic Code Enables Design Of A Novel
"gold" Class Of Green Fluorescent Proteins
Length = 227
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|3LVC|A Chain A, Crystal Structure Of Gfp-Like Protein Acegfp_g222e (A.
Coeru Colorless Form.
pdb|3LVC|B Chain B, Crystal Structure Of Gfp-Like Protein Acegfp_g222e (A.
Coeru Colorless Form.
pdb|3LVD|A Chain A, Crystal Structure Of Gfp-Like Protein Acegfp_g222e (A.
Coeru Uv-Photoconverted Green Form.
pdb|3LVD|B Chain B, Crystal Structure Of Gfp-Like Protein Acegfp_g222e (A.
Coeru Uv-Photoconverted Green Form
Length = 236
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
IV ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GIVPILIELNGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|1Q4E|A Chain A, S65t Q80r Y145c Green Fluorescent Protein (Gfp) Ph 8.5
Length = 236
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|1Q4C|A Chain A, S65t Q80r T203c Green Fluorescent Protein (Gfp) Ph 8.5
pdb|1Q4D|A Chain A, S65t Q80r T203c Green Fluorescent Protein (Gfp) Ph 5.5
Length = 236
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|1EMF|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|2EMO|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
Length = 237
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|1KYP|A Chain A, Crystal Structure Of An Apo Green Fluorescent Protein Zn
Biosensor
pdb|1KYR|A Chain A, Crystal Structure Of A Cu-Bound Green Fluorescent
Protein Zn Biosensor
pdb|1KYS|A Chain A, Crystal Structure Of A Zn-Bound Green Fluorescent
Protein Biosensor
Length = 237
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|2WUR|A Chain A, Atomic Resolution Structure Of Gfp Measured On A
Rotating Anode
Length = 236
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|2QZ0|A Chain A, Mature Q183e Variant Of Green Fluorescent Protein
Chromophore
Length = 228
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|2AWM|A Chain A, Gfp R96a Chromophore Maturation Recovery Mutant R96a
Q183r
Length = 228
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|2FWQ|A Chain A, Reduced Enolate Chromophore Intermediate For Y66h Gfp
Variant
Length = 237
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|1EMC|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EMC|B Chain B, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EMC|C Chain C, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EMC|D Chain D, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EME|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EMK|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
pdb|1EML|A Chain A, Green Fluorescent Protein From Aequorea Victoria, Mutant
Length = 237
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|3SRY|A Chain A, Engineered High-Affinity Halide-Binding Protein Derived
From Yfp: Halide-Free
pdb|3SS0|A Chain A, Engineered High-Affinity Halide-Binding Protein Derived
From Yfp: Fluoride Complex
pdb|3SSH|A Chain A, Engineered High-Affinity Halide-Binding Protein Derived
From Yfp: Chloride Complex
pdb|3SSK|A Chain A, Engineered High-Affinity Halide-Binding Protein Derived
From Yfp: Bromide Complex
pdb|3SSL|A Chain A, Engineered High-Affinity Halide-Binding Protein Derived
From Yfp: Iodide Complex
Length = 258
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|2HJO|A Chain A, Crystal Structure Of V224h Design Intermediate For Gfp
Metal Ion Reporter
Length = 236
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|2QRF|A Chain A, Green Fluorescent Protein: Cyclized-Only Intermediate Of
Chromophore Maturation In The Q183e Variant
Length = 228
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|2QT2|A Chain A, Cyclized-Dehydrated Intermediate Of Gfp Variant Q183e In
Chromophore Maturation
Length = 236
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|3VHT|A Chain A, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion
Protein In Complex With Ubiquitin
Length = 233
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 13 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 68
Query: 63 LQCF 66
+QCF
Sbjct: 69 VQCF 72
>pdb|3SSP|A Chain A, Engineered Low-Affinity Halide-Binding Protein Derived
From Yfp: Halide-Free
pdb|3SST|A Chain A, Engineered Low-Affinity Halide-Binding Protein Derived
From Yfp: Chloride Complex
pdb|3SSV|A Chain A, Engineered Low-Affinity Halide-Binding Protein Derived
From Yfp: Fluoride Complex
pdb|3SSY|A Chain A, Engineered Low-Affinity Halide-Binding Protein Derived
From Yfp: Iodide Complex
pdb|3SVE|A Chain A, Engineered Low-Affinity Halide-Binding Protein Derived
From Yfp: Bromide Complex
Length = 258
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|1QYQ|A Chain A, Crystal Structure Of The Cyclized S65g Y66g Gfp Variant
pdb|2FZU|A Chain A, Reduced Enolate Chromophore Intermediate For Gfp Variant
pdb|2G6E|A Chain A, Structure Of Cyclized F64l S65a Y66s Gfp Variant
pdb|2HCG|A Chain A, Structure Of S65t Y66f Gfp Variant After Cyclization,
Carbon-Carbon Bond Cleavage, And Oxygen Incorporation
Reactions
Length = 237
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|2B3Q|A Chain A, Crystal Structure Of A Well-Folded Variant Of Green
Fluorescent Protein
pdb|2B3Q|B Chain B, Crystal Structure Of A Well-Folded Variant Of Green
Fluorescent Protein
pdb|2B3Q|C Chain C, Crystal Structure Of A Well-Folded Variant Of Green
Fluorescent Protein
pdb|2B3Q|D Chain D, Crystal Structure Of A Well-Folded Variant Of Green
Fluorescent Protein
Length = 244
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|2QLE|A Chain A, GfpS205V MUTANT
pdb|2QLE|B Chain B, GfpS205V MUTANT
pdb|2QLE|C Chain C, GfpS205V MUTANT
pdb|2QLE|D Chain D, GfpS205V MUTANT
Length = 236
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|3U8P|A Chain A, Cytochrome B562 Integral Fusion With Egfp
pdb|3U8P|B Chain B, Cytochrome B562 Integral Fusion With Egfp
pdb|3U8P|C Chain C, Cytochrome B562 Integral Fusion With Egfp
Length = 347
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 37 ELTSSLICPLGKMRMAFPTKASTCAHLQCF 66
+LT IC GK+ + +PT +T +QCF
Sbjct: 152 KLTLKFICTTGKLPVPWPTLVTTLX-VQCF 180
>pdb|2YU4|A Chain A, Solution Structure Of The Sp-Ring Domain In Non-Smc
Element 2 Homolog (Mms21, S. Cerevisiae)
Length = 94
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 39 TSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKM----NELKPKWNCP 84
+S CP+ K M P K C H ++ ++M + K K CP
Sbjct: 5 SSGFTCPITKEEMKKPVKNKVCGHT--YEEDAIVRMIESRQKRKKKAYCP 52
>pdb|1BFP|A Chain A, Blue Variant Of Green Fluorescent Protein
Length = 236
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|1EMB| Chain , Green Fluorescent Protein (Gfp) From Aequorea Victoria,
Gln 80 Replaced With Arg
pdb|1EMG|A Chain A, Green Fluorescent Protein (65-67 Replaced By Cro, S65t
Substitution, Q80r)
pdb|1C4F|A Chain A, Green Fluorescent Protein S65t At Ph 4.6
pdb|1HCJ|A Chain A, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein
pdb|1HCJ|B Chain B, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein
pdb|1HCJ|C Chain C, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein
pdb|1HCJ|D Chain D, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein
pdb|1Q4A|A Chain A, S65t Q80r Green Fluorescent Protein (Gfp) Ph 8.5
pdb|1Q4B|A Chain A, S65t Q80r Green Fluorescent Protein (Gfp) Ph 5.5
pdb|1W7S|A Chain A, Wild-Type Aequorea Victoria Green Fluorescent Protein
pdb|1W7S|B Chain B, Wild-Type Aequorea Victoria Green Fluorescent Protein
pdb|1W7S|C Chain C, Wild-Type Aequorea Victoria Green Fluorescent Protein
pdb|1W7S|D Chain D, Wild-Type Aequorea Victoria Green Fluorescent Protein
pdb|1W7T|A Chain A, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein At 100 K
pdb|1W7T|B Chain B, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein At 100 K
pdb|1W7T|C Chain C, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein At 100 K
pdb|1W7T|D Chain D, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein At 100 K
pdb|1W7U|A Chain A, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein After Structural Annealing At 170k
pdb|1W7U|B Chain B, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein After Structural Annealing At 170k
pdb|1W7U|C Chain C, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein After Structural Annealing At 170k
pdb|1W7U|D Chain D, Photoproduct Of The Wild-Type Aequorea Victoria Green
Fluorescent Protein After Structural Annealing At 170k
pdb|1EMB|A Chain A, Green Fluorescent Protein (Gfp) From Aequorea Victoria,
Gln 80 Replaced With Arg
Length = 236
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|2DUE|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
S65tH148D AT PH 10
pdb|2DUF|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
S65tH148D AT PH 5.6
pdb|2DUI|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
H148d At Ph 9
Length = 236
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|2DUG|A Chain A, Crystal Structure Of A Green Fluorescent Protein
S65tH148N At Ph 5
pdb|2DUH|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
S65tH148N AT PH 9.5
Length = 236
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|2QU1|A Chain A, Crystal Structure Of A Cyclized Gfp Variant
Length = 239
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 13 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLX- 68
Query: 63 LQCF 66
+QCF
Sbjct: 69 VQCF 72
>pdb|1YJ2|A Chain A, Cyclized, Non-Dehydrated Post-Translational Product For
S65a Y66s H148g Gfp Variant
Length = 237
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|3G9A|A Chain A, Green Fluorescent Protein Bound To Minimizer Nanobody
Length = 236
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|2HGY|A Chain A, Structure Of S65a Y66f E222a Gfp Variant After
Cyclization And Carbon-Carbon Bond Cleavage
Length = 237
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|1EMA|A Chain A, Green Fluorescent Protein From Aequorea Victoria
Length = 236
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|1YJF|A Chain A, Cyclized Post-Translational Product For S65a Y66s
(Gfphal) Green Fluorescent Protein Variant
pdb|2HGD|A Chain A, Structure Of S65a Y66f Gfp Variant With An Oxidized
Chromophore
Length = 237
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 4 IVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T +
Sbjct: 827 VVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX-V 882
Query: 64 QCF 66
QCF
Sbjct: 883 QCF 885
>pdb|1B9C|A Chain A, Green Fluorescent Protein Mutant F99s, M153t And V163a
pdb|1B9C|B Chain B, Green Fluorescent Protein Mutant F99s, M153t And V163a
pdb|1B9C|C Chain C, Green Fluorescent Protein Mutant F99s, M153t And V163a
pdb|1B9C|D Chain D, Green Fluorescent Protein Mutant F99s, M153t And V163a
Length = 236
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|3AI4|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent
Protein - Mouse Polymerase Iota Ubiquitin Binding Motif
Fusion Protein
Length = 283
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 13 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 68
Query: 63 LQCF 66
+QCF
Sbjct: 69 VQCF 72
>pdb|3GJ1|A Chain A, Non Photoactivated State Of Pa-Gfp
pdb|3GJ1|B Chain B, Non Photoactivated State Of Pa-Gfp
pdb|3GJ1|C Chain C, Non Photoactivated State Of Pa-Gfp
pdb|3GJ1|D Chain D, Non Photoactivated State Of Pa-Gfp
pdb|3GJ2|A Chain A, Photoactivated State Of Pa-Gfp
pdb|3GJ2|B Chain B, Photoactivated State Of Pa-Gfp
pdb|3GJ2|C Chain C, Photoactivated State Of Pa-Gfp
pdb|3GJ2|D Chain D, Photoactivated State Of Pa-Gfp
Length = 229
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 66
Query: 63 LQCF 66
+QCF
Sbjct: 67 VQCF 70
>pdb|3K1K|A Chain A, Green Fluorescent Protein Bound To Minimizer Nanobody
pdb|3K1K|B Chain B, Green Fluorescent Protein Bound To Minimizer Nanobody
Length = 236
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent
Protein- Ubiquitin Fusion Protein
Length = 307
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 13 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 68
Query: 63 LQCF 66
+QCF
Sbjct: 69 VQCF 72
>pdb|1KP5|A Chain A, Cyclic Green Fluorescent Protein
pdb|1KP5|B Chain B, Cyclic Green Fluorescent Protein
Length = 246
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 20 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 75
Query: 63 LQCF 66
+QCF
Sbjct: 76 VQCF 79
>pdb|4BDU|A Chain A, Bax Bh3-in-groove Dimer (gfp)
pdb|4BDU|B Chain B, Bax Bh3-in-groove Dimer (gfp)
pdb|4BDU|C Chain C, Bax Bh3-in-groove Dimer (gfp)
pdb|4BDU|D Chain D, Bax Bh3-in-groove Dimer (gfp)
Length = 309
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 13 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFX- 68
Query: 63 LQCF 66
+QCF
Sbjct: 69 VQCF 72
>pdb|2HFC|A Chain A, Structure Of S65t Y66f R96a Gfp Variant In Precursor
State
Length = 239
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCA- 61
+V ++ L D+ ++ + E + + +LT IC GK+ + +PT +T
Sbjct: 11 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTF 67
Query: 62 HLQCF 66
+QCF
Sbjct: 68 GVQCF 72
>pdb|2Z2N|A Chain A, Crystal Structure Of Selenomethionine Substituted
Virginiamycin B Lyase From Staphylococcus Aureus
Length = 299
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 9/38 (23%)
Query: 58 STCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILL 95
S H CFDG T W CDK+G L L+
Sbjct: 266 SAEPHGICFDGETI---------WFAXECDKIGKLTLI 294
>pdb|1RMO|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria
Green Fluorescent Proteins With An Expanded Genetic
Code
Length = 236
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPXPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|1RM9|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria
Green Fluorescent Proteins With An Expanded Genetic
Code
Length = 236
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + PT +T
Sbjct: 10 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPXPTLVTTLX- 65
Query: 63 LQCF 66
+QCF
Sbjct: 66 VQCF 69
>pdb|1RMM|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria
Green Fluorescent Proteins With An Expanded Genetic
Code
pdb|1RMP|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria
Green Fluorescent Proteins With An Expanded Genetic
Code
Length = 226
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + PT +T
Sbjct: 9 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPXPTLVTTLX- 64
Query: 63 LQCF 66
+QCF
Sbjct: 65 VQCF 68
>pdb|1OXF|A Chain A, Expansion Of The Genetic Code Enables Design Of A Novel
"gold" Class Of Green Fluorescent Proteins
Length = 225
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 3 SIVSLIAHLMRDIAFSRYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAH 62
+V ++ L D+ ++ + E + + +LT IC GK+ + PT +T
Sbjct: 9 GVVPILVELDGDVNGHKF---SVSGEGEGDATYGKLTLKFICTTGKLPVPXPTLVTTLX- 64
Query: 63 LQCF 66
+QCF
Sbjct: 65 VQCF 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,778,438
Number of Sequences: 62578
Number of extensions: 86289
Number of successful extensions: 437
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 114
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)