Query psy8140
Match_columns 108
No_of_seqs 117 out of 448
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 19:40:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo9_A E3 SUMO-protein ligase 100.0 8.5E-34 2.9E-38 228.2 7.9 103 4-106 177-280 (360)
2 3i2d_A E3 SUMO-protein ligase 100.0 5.2E-33 1.8E-37 224.2 8.1 103 4-106 211-314 (371)
3 3htk_C E3 SUMO-protein ligase 99.5 3.1E-14 1.1E-18 110.7 4.7 75 28-104 168-244 (267)
4 2kr4_A Ubiquitin conjugation f 98.5 6E-08 2.1E-12 62.5 3.2 69 30-103 3-71 (85)
5 2yu4_A E3 SUMO-protein ligase 98.5 7.8E-08 2.7E-12 62.9 3.2 64 39-104 5-75 (94)
6 2bay_A PRE-mRNA splicing facto 98.4 7.6E-08 2.6E-12 59.0 2.2 54 40-97 2-55 (61)
7 2kre_A Ubiquitin conjugation f 98.3 7E-07 2.4E-11 59.3 4.0 64 36-104 24-87 (100)
8 1wgm_A Ubiquitin conjugation f 98.2 1.5E-06 5.3E-11 57.5 4.5 64 36-104 17-81 (98)
9 1t1h_A Gspef-atpub14, armadill 98.1 3E-06 1E-10 52.6 4.2 60 41-104 8-67 (78)
10 2f42_A STIP1 homology and U-bo 98.0 3.2E-06 1.1E-10 62.0 4.0 61 39-103 104-164 (179)
11 2c2l_A CHIP, carboxy terminus 97.9 6.6E-06 2.3E-10 60.9 2.8 61 40-104 207-267 (281)
12 3ztg_A E3 ubiquitin-protein li 97.8 1.4E-05 4.8E-10 50.9 3.6 64 40-105 12-76 (92)
13 2ecy_A TNF receptor-associated 97.7 7.1E-05 2.4E-09 44.9 4.9 55 37-95 11-65 (66)
14 2ecw_A Tripartite motif-contai 97.5 4.8E-05 1.7E-09 47.0 2.9 63 39-104 17-83 (85)
15 2ysl_A Tripartite motif-contai 97.5 0.00014 4.8E-09 44.1 4.5 57 37-96 16-73 (73)
16 2y43_A E3 ubiquitin-protein li 97.5 0.00015 5.2E-09 46.7 4.6 62 40-105 21-82 (99)
17 2ecv_A Tripartite motif-contai 97.4 6.7E-05 2.3E-09 46.3 2.6 66 38-104 16-83 (85)
18 3fl2_A E3 ubiquitin-protein li 97.3 0.00022 7.6E-09 47.8 4.4 63 39-105 50-113 (124)
19 2ckl_A Polycomb group ring fin 97.3 0.00028 9.6E-09 46.2 4.8 64 38-105 12-79 (108)
20 2egp_A Tripartite motif-contai 97.3 4.8E-05 1.7E-09 46.8 0.3 62 40-104 11-77 (79)
21 1jm7_A BRCA1, breast cancer ty 97.2 0.00026 8.8E-09 46.1 3.5 57 41-100 21-78 (112)
22 2yur_A Retinoblastoma-binding 97.2 0.00015 5E-09 44.7 1.9 56 38-95 12-67 (74)
23 3hct_A TNF receptor-associated 97.2 0.00027 9.2E-09 47.1 3.3 67 35-105 12-78 (118)
24 3lrq_A E3 ubiquitin-protein li 97.2 0.00034 1.2E-08 45.5 3.6 63 39-104 20-82 (100)
25 1z6u_A NP95-like ring finger p 97.1 0.00046 1.6E-08 48.4 4.4 63 39-105 76-139 (150)
26 2ckl_B Ubiquitin ligase protei 97.1 0.00029 9.9E-09 49.4 3.0 64 39-105 52-116 (165)
27 2djb_A Polycomb group ring fin 97.0 0.00044 1.5E-08 42.1 3.2 54 39-96 13-66 (72)
28 1g25_A CDK-activating kinase a 97.0 0.00077 2.6E-08 40.1 3.7 54 42-98 4-61 (65)
29 1jm7_B BARD1, BRCA1-associated 97.0 0.00028 9.7E-09 47.0 1.9 59 41-105 22-80 (117)
30 2csy_A Zinc finger protein 183 96.9 0.0012 4.3E-08 40.8 4.5 53 40-98 14-66 (81)
31 2xeu_A Ring finger protein 4; 96.7 0.00079 2.7E-08 39.4 2.2 51 42-96 4-60 (64)
32 3hcs_A TNF receptor-associated 96.7 0.0012 4E-08 46.4 3.5 68 34-105 11-78 (170)
33 3ng2_A RNF4, snurf, ring finge 96.5 0.0013 4.5E-08 39.3 2.4 52 41-96 10-67 (71)
34 3l11_A E3 ubiquitin-protein li 96.5 0.00094 3.2E-08 44.0 1.6 61 41-105 15-82 (115)
35 2ct2_A Tripartite motif protei 96.4 0.0031 1E-07 39.1 3.6 53 40-95 14-71 (88)
36 2d8t_A Dactylidin, ring finger 96.2 0.0013 4.4E-08 39.9 1.1 50 41-95 15-64 (71)
37 4ayc_A E3 ubiquitin-protein li 96.2 0.0036 1.2E-07 42.7 3.4 57 42-103 54-112 (138)
38 2ysj_A Tripartite motif-contai 96.2 0.0056 1.9E-07 36.0 3.9 48 36-86 15-63 (63)
39 1rmd_A RAG1; V(D)J recombinati 96.2 0.003 1E-07 41.6 2.8 53 40-96 22-74 (116)
40 4ap4_A E3 ubiquitin ligase RNF 96.0 0.0043 1.5E-07 40.8 3.1 52 41-96 7-64 (133)
41 3knv_A TNF receptor-associated 95.8 0.0027 9.2E-08 44.0 1.3 60 30-93 20-79 (141)
42 1chc_A Equine herpes virus-1 r 95.7 0.0049 1.7E-07 36.6 2.0 47 41-91 5-51 (68)
43 2ecj_A Tripartite motif-contai 95.7 0.015 5E-07 33.2 3.9 45 39-86 13-58 (58)
44 1iym_A EL5; ring-H2 finger, ub 95.2 0.011 3.7E-07 33.6 2.3 46 42-91 6-54 (55)
45 2ect_A Ring finger protein 126 95.1 0.0098 3.3E-07 36.2 2.0 54 40-97 14-69 (78)
46 2ep4_A Ring finger protein 24; 95.1 0.018 6.3E-07 34.6 3.2 49 39-91 13-63 (74)
47 2ecm_A Ring finger and CHY zin 95.0 0.012 4E-07 33.4 2.0 46 42-91 6-54 (55)
48 2ea6_A Ring finger protein 4; 95.0 0.012 4.1E-07 34.6 2.0 48 40-91 14-67 (69)
49 1e4u_A Transcriptional repress 94.6 0.053 1.8E-06 34.0 4.5 53 41-96 11-66 (78)
50 2ecl_A Ring-box protein 2; RNF 94.5 0.028 9.7E-07 35.0 2.9 34 58-95 46-79 (81)
51 2kiz_A E3 ubiquitin-protein li 94.2 0.046 1.6E-06 32.4 3.3 48 41-92 14-63 (69)
52 1x4j_A Ring finger protein 38; 93.7 0.021 7.3E-07 34.6 1.3 48 41-93 23-73 (75)
53 1bor_A Transcription factor PM 93.7 0.027 9.1E-07 32.7 1.6 46 41-94 6-51 (56)
54 2ecn_A Ring finger protein 141 92.8 0.023 7.9E-07 33.8 0.3 49 40-94 14-62 (70)
55 2l0b_A E3 ubiquitin-protein li 92.0 0.11 3.8E-06 32.7 2.8 48 41-92 40-89 (91)
56 4ap4_A E3 ubiquitin ligase RNF 91.9 0.079 2.7E-06 34.5 2.1 51 41-96 72-129 (133)
57 2ecg_A Baculoviral IAP repeat- 91.3 0.1 3.4E-06 31.8 2.0 43 41-92 25-68 (75)
58 3vk6_A E3 ubiquitin-protein li 91.2 0.12 4E-06 34.7 2.4 45 44-91 4-48 (101)
59 1v87_A Deltex protein 2; ring- 90.5 0.21 7.3E-06 32.2 3.1 48 42-91 26-93 (114)
60 2vje_B MDM4 protein; proto-onc 90.4 0.14 4.8E-06 30.4 2.0 47 41-91 7-55 (63)
61 4ic3_A E3 ubiquitin-protein li 90.0 0.07 2.4E-06 32.6 0.4 42 41-91 24-66 (74)
62 2vje_A E3 ubiquitin-protein li 89.1 0.21 7.1E-06 29.7 2.1 46 42-91 9-56 (64)
63 1wim_A KIAA0161 protein; ring 87.7 0.12 4.2E-06 32.6 0.4 55 41-95 5-69 (94)
64 3dpl_R Ring-box protein 1; ubi 86.6 0.5 1.7E-05 31.1 2.9 47 43-93 39-102 (106)
65 2yrc_A Protein transport prote 85.9 0.057 1.9E-06 32.7 -1.9 19 72-90 25-43 (59)
66 2yho_A E3 ubiquitin-protein li 84.4 0.42 1.4E-05 29.6 1.6 41 42-91 19-60 (79)
67 3m62_A Ubiquitin conjugation f 84.2 0.31 1.1E-05 43.6 1.2 59 37-99 887-945 (968)
68 6rxn_A Rubredoxin; electron tr 84.2 0.29 9.9E-06 28.2 0.7 13 77-89 27-39 (46)
69 2y1n_A E3 ubiquitin-protein li 83.2 0.53 1.8E-05 38.0 2.1 51 41-95 332-382 (389)
70 2k5c_A Uncharacterized protein 82.6 0.15 5E-06 33.5 -1.1 18 80-97 8-25 (95)
71 2ea5_A Cell growth regulator w 79.3 1.2 4.2E-05 26.6 2.3 42 41-91 15-57 (68)
72 4rxn_A Rubredoxin; electron tr 78.8 0.58 2E-05 27.8 0.7 12 78-89 34-45 (54)
73 1yk4_A Rubredoxin, RD; electro 78.8 0.59 2E-05 27.4 0.7 13 77-89 32-44 (52)
74 1e8j_A Rubredoxin; iron-sulfur 78.6 0.6 2.1E-05 27.4 0.7 12 78-89 34-45 (52)
75 2v3b_B Rubredoxin 2, rubredoxi 78.5 0.58 2E-05 27.8 0.7 12 78-89 34-45 (55)
76 2d8s_A Cellular modulator of i 77.0 1.3 4.3E-05 27.7 1.9 39 51-94 31-72 (80)
77 3t6p_A Baculoviral IAP repeat- 76.9 0.47 1.6E-05 37.4 -0.1 42 41-91 295-337 (345)
78 1dx8_A Rubredoxin; electron tr 76.3 0.74 2.5E-05 28.6 0.7 12 78-89 38-49 (70)
79 2kn9_A Rubredoxin; metalloprot 75.7 0.77 2.6E-05 29.5 0.7 12 78-89 58-69 (81)
80 1yuz_A Nigerythrin; rubrythrin 74.9 0.89 3E-05 33.2 0.9 21 59-90 176-196 (202)
81 2j9u_B VPS36, vacuolar protein 73.8 1 3.4E-05 28.7 0.8 11 77-87 14-24 (76)
82 1s24_A Rubredoxin 2; electron 71.5 1.1 3.9E-05 29.0 0.7 13 77-89 65-77 (87)
83 2jvx_A NF-kappa-B essential mo 71.3 1.6 5.6E-05 22.6 1.2 13 79-91 2-14 (28)
84 2ct0_A Non-SMC element 1 homol 70.4 7.6 0.00026 23.9 4.4 32 59-92 33-64 (74)
85 1lv3_A Hypothetical protein YA 70.4 1.7 5.7E-05 27.1 1.3 18 75-92 4-21 (68)
86 2kvh_A Zinc finger and BTB dom 69.8 1.9 6.6E-05 19.5 1.2 13 79-91 2-14 (27)
87 2m0e_A Zinc finger and BTB dom 66.7 2.8 9.6E-05 18.7 1.4 13 80-92 2-14 (29)
88 1l8d_A DNA double-strand break 66.7 1.6 5.4E-05 28.3 0.6 13 80-92 47-59 (112)
89 2m0f_A Zinc finger and BTB dom 65.4 2.3 8E-05 19.1 1.0 12 80-91 2-13 (29)
90 1ard_A Yeast transcription fac 65.0 2.6 8.8E-05 19.0 1.1 12 80-91 2-13 (29)
91 1p7a_A BF3, BKLF, kruppel-like 64.4 2.6 9E-05 20.5 1.1 14 78-91 9-22 (37)
92 2kvf_A Zinc finger and BTB dom 64.3 2.7 9.3E-05 19.0 1.1 12 80-91 3-14 (28)
93 1gh9_A 8.3 kDa protein (gene M 62.4 2.1 7.2E-05 26.6 0.6 20 77-97 18-37 (71)
94 2elr_A Zinc finger protein 406 62.3 3.2 0.00011 20.0 1.2 14 78-91 7-20 (36)
95 1klr_A Zinc finger Y-chromosom 62.2 3.1 0.0001 18.8 1.1 13 80-92 2-14 (30)
96 2elx_A Zinc finger protein 406 61.6 3.4 0.00012 19.6 1.2 14 78-91 5-18 (35)
97 2els_A Zinc finger protein 406 61.0 3.4 0.00012 20.0 1.2 14 78-91 7-20 (36)
98 3vhs_A ATPase wrnip1; zinc fin 60.6 3.2 0.00011 21.4 1.0 13 80-92 6-18 (29)
99 4a0k_B E3 ubiquitin-protein li 59.9 1.9 6.4E-05 29.0 0.0 32 58-93 82-113 (117)
100 2lvu_A Zinc finger and BTB dom 64.2 1.9 6.5E-05 19.3 0.0 13 80-92 2-14 (26)
101 2kvg_A Zinc finger and BTB dom 59.7 3 0.0001 19.0 0.7 12 80-91 3-14 (27)
102 1m2o_A SEC23, protein transpor 59.7 1.1 3.7E-05 38.6 -1.5 33 54-90 53-87 (768)
103 2nut_A Protein transport prote 58.9 1.1 3.7E-05 38.7 -1.6 33 54-90 62-96 (769)
104 1znf_A 31ST zinc finger from X 58.6 3.7 0.00013 18.2 1.0 12 81-92 2-13 (27)
105 2m0d_A Zinc finger and BTB dom 58.4 4.2 0.00014 18.2 1.2 13 79-91 2-14 (30)
106 2elt_A Zinc finger protein 406 58.1 4.2 0.00014 19.5 1.2 14 78-91 7-20 (36)
107 4ayb_P DNA-directed RNA polyme 58.1 1.7 5.8E-05 25.4 -0.4 26 59-90 8-33 (48)
108 3efo_B SEC24 related gene fami 57.9 1 3.5E-05 38.9 -2.0 33 53-89 97-129 (770)
109 1rik_A E6APC1 peptide; E6-bind 57.5 4.1 0.00014 18.3 1.0 12 80-91 2-13 (29)
110 2elq_A Zinc finger protein 406 57.3 4.4 0.00015 19.5 1.2 14 78-91 7-20 (36)
111 1srk_A Zinc finger protein ZFP 57.2 4.4 0.00015 19.3 1.2 14 78-91 5-18 (35)
112 2ytb_A Zinc finger protein 32; 56.7 4.7 0.00016 20.1 1.3 14 78-91 9-22 (42)
113 2qgp_A HNH endonuclease; Q39X4 56.5 3.6 0.00012 27.1 0.9 22 80-101 35-56 (112)
114 1zfo_A LAsp-1; LIM domain, zin 56.1 4.3 0.00015 20.8 1.0 14 80-93 3-16 (31)
115 3eh2_A Protein transport prote 55.5 1.1 3.9E-05 38.6 -2.1 34 53-90 93-126 (766)
116 2elp_A Zinc finger protein 406 55.1 5 0.00017 19.5 1.2 15 78-92 7-21 (37)
117 2el5_A Zinc finger protein 268 54.2 5.3 0.00018 20.0 1.2 14 78-91 8-21 (42)
118 1bbo_A Human enhancer-binding 54.2 9.5 0.00032 20.2 2.4 15 77-91 26-40 (57)
119 1pcx_A Protein transport prote 54.1 1.4 4.9E-05 38.2 -1.7 33 54-90 112-144 (810)
120 3uk3_C Zinc finger protein 217 54.0 9.3 0.00032 20.2 2.3 26 66-91 14-43 (57)
121 3gj3_B Nuclear pore complex pr 53.9 4.4 0.00015 21.6 0.9 14 77-90 4-17 (33)
122 2ept_A Zinc finger protein 32; 53.6 5.6 0.00019 19.8 1.2 14 78-91 8-21 (41)
123 1paa_A Yeast transcription fac 52.5 5.4 0.00019 18.0 1.0 12 80-91 2-13 (30)
124 2eos_A B-cell lymphoma 6 prote 52.5 6.2 0.00021 19.7 1.3 15 78-92 9-23 (42)
125 2enf_A Zinc finger protein 347 52.3 6.1 0.00021 20.2 1.3 14 78-91 10-23 (46)
126 2elv_A Zinc finger protein 406 52.3 6.1 0.00021 19.0 1.2 14 78-91 7-20 (36)
127 2epc_A Zinc finger protein 32; 52.0 5.9 0.0002 19.7 1.2 14 78-91 9-22 (42)
128 2en7_A Zinc finger protein 268 51.9 5.3 0.00018 20.1 1.0 14 78-91 10-23 (44)
129 2yts_A Zinc finger protein 484 51.7 6.1 0.00021 20.1 1.2 14 78-91 10-23 (46)
130 2elo_A Zinc finger protein 406 51.4 4.8 0.00016 19.5 0.7 14 78-91 7-20 (37)
131 2eml_A Zinc finger protein 28 51.1 6.8 0.00023 20.0 1.4 14 78-91 10-23 (46)
132 2eov_A Zinc finger protein 484 51.1 6.6 0.00022 20.0 1.3 14 78-91 10-23 (46)
133 2ely_A Zinc finger protein 224 51.0 8.4 0.00029 19.7 1.8 15 78-92 10-24 (46)
134 1rim_A E6APC2 peptide; E6-bind 51.0 6.1 0.00021 18.9 1.1 12 80-91 2-13 (33)
135 2lvr_A Zinc finger and BTB dom 56.3 3.2 0.00011 18.8 0.0 12 80-91 3-14 (30)
136 2eof_A Zinc finger protein 268 50.9 6.2 0.00021 19.8 1.2 14 78-91 10-23 (44)
137 1nj3_A NPL4; NZF domain, rubre 50.8 5.9 0.0002 20.2 1.0 10 78-87 4-13 (31)
138 2em6_A Zinc finger protein 224 50.7 6.7 0.00023 20.1 1.3 14 78-91 10-23 (46)
139 2emg_A Zinc finger protein 484 50.6 6.5 0.00022 20.1 1.2 14 78-91 10-23 (46)
140 2eon_A ZFP-95, zinc finger pro 50.4 6.8 0.00023 20.1 1.3 15 78-92 10-24 (46)
141 2yrj_A Zinc finger protein 473 50.3 6.6 0.00023 20.0 1.2 14 78-91 10-23 (46)
142 1m2v_B SEC24, protein transpor 50.3 1.8 6.2E-05 38.3 -1.7 33 54-90 228-260 (926)
143 1f2i_G Fusion of N-terminal 17 50.3 11 0.00037 21.1 2.3 26 66-91 31-60 (73)
144 2ytf_A Zinc finger protein 268 49.9 6.8 0.00023 20.0 1.2 14 78-91 10-23 (46)
145 2yti_A Zinc finger protein 347 49.8 6.1 0.00021 20.2 1.0 15 78-92 10-24 (46)
146 2en2_A B-cell lymphoma 6 prote 49.7 6.5 0.00022 19.6 1.1 14 78-91 9-22 (42)
147 2eow_A Zinc finger protein 347 49.6 6.8 0.00023 19.9 1.2 14 78-91 10-23 (46)
148 1vyx_A ORF K3, K3RING; zinc-bi 49.5 13 0.00043 21.7 2.5 37 51-92 20-59 (60)
149 2ep1_A Zinc finger protein 484 49.5 6.7 0.00023 20.0 1.2 14 78-91 10-23 (46)
150 2lvt_A Zinc finger and BTB dom 54.6 3.6 0.00012 18.7 0.0 12 80-91 2-13 (29)
151 2yte_A Zinc finger protein 473 48.9 7.3 0.00025 19.3 1.2 14 78-91 8-21 (42)
152 2yth_A Zinc finger protein 224 48.9 7.4 0.00025 19.9 1.3 14 78-91 10-23 (46)
153 2yu5_A Zinc finger protein 473 48.7 7.1 0.00024 19.7 1.2 15 78-92 10-24 (44)
154 2emj_A Zinc finger protein 28 48.7 7 0.00024 20.0 1.2 14 78-91 10-23 (46)
155 2em3_A Zinc finger protein 28 48.7 7.3 0.00025 19.9 1.2 14 78-91 10-23 (46)
156 2yto_A Zinc finger protein 484 48.6 7.3 0.00025 19.9 1.2 14 78-91 10-23 (46)
157 3pwf_A Rubrerythrin; non heme 48.6 5.9 0.0002 28.0 1.1 13 78-90 136-148 (170)
158 2ytg_A ZFP-95, zinc finger pro 48.5 7.1 0.00024 19.9 1.2 15 78-92 10-24 (46)
159 2emi_A Zinc finger protein 484 48.5 7.4 0.00025 19.9 1.2 14 78-91 10-23 (46)
160 2ep3_A Zinc finger protein 484 48.4 7.4 0.00025 19.9 1.2 14 78-91 10-23 (46)
161 2emy_A Zinc finger protein 268 48.3 7.2 0.00025 19.9 1.2 14 78-91 10-23 (46)
162 2ene_A Zinc finger protein 347 48.3 7 0.00024 19.9 1.1 14 78-91 10-23 (46)
163 2em5_A ZFP-95, zinc finger pro 48.2 7.2 0.00025 20.0 1.2 14 78-91 10-23 (46)
164 2eop_A Zinc finger protein 268 48.1 7.5 0.00026 19.8 1.2 14 78-91 10-23 (46)
165 1x6e_A Zinc finger protein 24; 48.1 13 0.00044 20.9 2.4 26 66-91 24-53 (72)
166 2emx_A Zinc finger protein 268 48.0 7.4 0.00025 19.6 1.2 14 78-91 8-21 (44)
167 2emf_A Zinc finger protein 484 48.0 7.9 0.00027 19.8 1.3 14 78-91 10-23 (46)
168 2eoj_A Zinc finger protein 268 47.9 6.2 0.00021 19.9 0.8 14 78-91 10-23 (44)
169 2eq1_A Zinc finger protein 347 47.7 7.2 0.00025 19.9 1.1 14 78-91 10-23 (46)
170 2ytp_A Zinc finger protein 484 47.6 7.7 0.00026 19.8 1.2 14 78-91 10-23 (46)
171 2eou_A Zinc finger protein 473 47.5 7.4 0.00025 19.7 1.1 15 78-92 10-24 (44)
172 2eme_A Zinc finger protein 473 47.5 7.8 0.00027 19.7 1.2 14 78-91 10-23 (46)
173 2en9_A Zinc finger protein 28 47.2 7.7 0.00026 19.8 1.2 14 78-91 10-23 (46)
174 2ep2_A Zinc finger protein 484 47.2 7.9 0.00027 19.7 1.2 14 78-91 10-23 (46)
175 2elm_A Zinc finger protein 406 46.9 6.3 0.00022 19.3 0.8 14 78-91 7-20 (37)
176 2em7_A Zinc finger protein 224 46.9 8 0.00028 19.7 1.2 14 78-91 10-23 (46)
177 2eoz_A Zinc finger protein 473 46.8 6.2 0.00021 20.3 0.7 14 78-91 10-23 (46)
178 2eq3_A Zinc finger protein 347 46.8 5.8 0.0002 20.2 0.6 14 78-91 10-23 (46)
179 2epz_A Zinc finger protein 28 46.7 8.5 0.00029 19.6 1.3 15 78-92 10-24 (46)
180 2em9_A Zinc finger protein 224 46.7 8.2 0.00028 19.6 1.2 14 78-91 10-23 (46)
181 2ytk_A Zinc finger protein 347 46.6 7.9 0.00027 19.7 1.2 14 78-91 10-23 (46)
182 2em2_A Zinc finger protein 28 46.5 8.2 0.00028 19.7 1.2 14 78-91 10-23 (46)
183 2emb_A Zinc finger protein 473 46.5 7.7 0.00026 19.6 1.1 14 78-91 10-23 (44)
184 2epw_A Zinc finger protein 268 46.5 8.2 0.00028 19.6 1.2 15 78-92 10-24 (46)
185 2emz_A ZFP-95, zinc finger pro 46.5 8.3 0.00028 19.7 1.3 15 78-92 10-24 (46)
186 2ytj_A Zinc finger protein 484 46.3 8.3 0.00028 19.6 1.2 14 78-91 10-23 (46)
187 3a9j_C Mitogen-activated prote 46.2 7.5 0.00026 20.2 1.0 11 78-88 6-16 (34)
188 2eq2_A Zinc finger protein 347 46.2 7.5 0.00026 19.8 1.0 14 78-91 10-23 (46)
189 2eoq_A Zinc finger protein 224 46.2 8.2 0.00028 19.7 1.2 14 78-91 10-23 (46)
190 2ytq_A Zinc finger protein 268 46.1 8.7 0.0003 19.6 1.3 14 78-91 10-23 (46)
191 2ytn_A Zinc finger protein 347 46.0 8.2 0.00028 19.7 1.2 15 78-92 10-24 (46)
192 2en3_A ZFP-95, zinc finger pro 45.9 8.5 0.00029 19.6 1.2 15 78-92 10-24 (46)
193 2emh_A Zinc finger protein 484 45.8 8.2 0.00028 19.7 1.2 14 78-91 10-23 (46)
194 2epx_A Zinc finger protein 28 45.8 9.3 0.00032 19.4 1.4 14 78-91 10-23 (47)
195 2emm_A ZFP-95, zinc finger pro 45.6 8.7 0.0003 19.5 1.2 14 78-91 10-23 (46)
196 2eom_A ZFP-95, zinc finger pro 45.6 8.5 0.00029 19.7 1.2 15 78-92 10-24 (46)
197 2lce_A B-cell lymphoma 6 prote 45.5 16 0.00054 20.6 2.5 16 76-91 41-56 (74)
198 2eor_A Zinc finger protein 224 45.5 8.4 0.00029 19.6 1.2 14 78-91 10-23 (46)
199 2yrm_A B-cell lymphoma 6 prote 45.4 9.3 0.00032 19.3 1.3 14 78-91 8-21 (43)
200 2epv_A Zinc finger protein 268 45.4 8.8 0.0003 19.5 1.2 14 78-91 10-23 (44)
201 2enh_A Zinc finger protein 28 45.4 8.3 0.00028 19.7 1.1 15 78-92 10-24 (46)
202 2em8_A Zinc finger protein 224 45.4 8.7 0.0003 19.6 1.2 14 78-91 10-23 (46)
203 1njq_A Superman protein; zinc- 45.2 7.8 0.00027 19.1 1.0 13 79-91 5-17 (39)
204 2ytr_A Zinc finger protein 347 45.2 7.7 0.00026 19.7 1.0 14 78-91 10-23 (46)
205 2drp_A Protein (tramtrack DNA- 45.2 8.9 0.0003 21.1 1.3 15 77-91 37-51 (66)
206 2ema_A Zinc finger protein 347 45.2 8.7 0.0003 19.6 1.2 14 78-91 10-23 (46)
207 2el6_A Zinc finger protein 268 45.1 8.6 0.0003 19.6 1.2 14 78-91 10-23 (46)
208 2i5o_A DNA polymerase ETA; zin 44.7 7.1 0.00024 21.5 0.8 18 77-94 6-23 (39)
209 2jrr_A Uncharacterized protein 44.6 1.6 5.3E-05 27.1 -2.2 25 71-95 31-55 (67)
210 2eoy_A Zinc finger protein 473 44.5 9 0.00031 19.6 1.2 15 78-92 10-24 (46)
211 2ytt_A Zinc finger protein 473 44.4 8.3 0.00028 19.7 1.0 14 78-91 10-23 (46)
212 2eox_A Zinc finger protein 473 44.3 7.1 0.00024 19.7 0.8 14 78-91 10-23 (44)
213 3eh1_A Protein transport prote 44.3 2.8 9.5E-05 36.1 -1.4 33 53-90 84-116 (751)
214 2emk_A Zinc finger protein 28 44.1 9.5 0.00032 19.5 1.3 14 78-91 10-23 (46)
215 2eq0_A Zinc finger protein 347 44.1 9.1 0.00031 19.5 1.2 14 78-91 10-23 (46)
216 1yui_A GAGA-factor; complex (D 44.1 13 0.00046 19.8 1.9 15 77-91 21-35 (54)
217 2epu_A Zinc finger protein 32; 44.1 7.2 0.00025 19.9 0.7 14 78-91 10-23 (45)
218 2eoh_A Zinc finger protein 28 44.0 9.3 0.00032 19.5 1.2 15 78-92 10-24 (46)
219 2yu8_A Zinc finger protein 347 44.0 9.2 0.00031 19.5 1.2 15 78-92 10-24 (46)
220 2elz_A Zinc finger protein 224 44.0 9.6 0.00033 19.4 1.3 14 78-91 10-23 (46)
221 2kfq_A FP1; protein, de novo p 44.0 6.4 0.00022 18.7 0.5 12 80-91 2-13 (32)
222 2eq4_A Zinc finger protein 224 43.9 9.2 0.00031 19.4 1.2 14 78-91 10-23 (46)
223 2em4_A Zinc finger protein 28 43.8 9 0.00031 19.6 1.1 14 78-91 10-23 (46)
224 2emp_A Zinc finger protein 347 43.8 9.6 0.00033 19.4 1.2 14 78-91 10-23 (46)
225 2ysp_A Zinc finger protein 224 43.7 7.9 0.00027 19.7 0.9 14 78-91 10-23 (46)
226 2el4_A Zinc finger protein 268 43.7 9.4 0.00032 19.4 1.2 14 78-91 10-23 (46)
227 2ytd_A Zinc finger protein 473 43.5 9.7 0.00033 19.4 1.2 14 78-91 10-23 (46)
228 2en8_A Zinc finger protein 224 43.4 9.2 0.00032 19.4 1.1 14 78-91 10-23 (46)
229 2vpb_A Hpygo1, pygopus homolog 43.3 11 0.00038 22.5 1.6 21 77-97 5-25 (65)
230 2ep0_A Zinc finger protein 28 43.0 10 0.00034 19.3 1.2 14 78-91 10-23 (46)
231 3gj5_B Nuclear pore complex pr 42.8 11 0.00039 20.1 1.4 15 77-91 4-18 (34)
232 2eoo_A ZFP-95, zinc finger pro 42.8 10 0.00035 19.3 1.2 14 78-91 10-23 (46)
233 2em0_A Zinc finger protein 224 42.5 10 0.00036 19.2 1.3 14 78-91 10-23 (46)
234 2adr_A ADR1; transcription reg 42.4 15 0.00051 19.6 2.0 14 78-91 28-41 (60)
235 2lk0_A RNA-binding protein 5; 42.3 10 0.00036 19.6 1.2 12 77-88 2-13 (32)
236 2en1_A Zinc finger protein 224 42.0 8.1 0.00028 19.7 0.7 14 78-91 10-23 (46)
237 3na7_A HP0958; flagellar bioge 41.8 19 0.00064 26.5 3.0 40 53-94 194-236 (256)
238 2eps_A POZ-, at HOOK-, and zin 41.7 16 0.00053 19.5 2.0 14 78-91 39-52 (54)
239 2enc_A Zinc finger protein 224 41.6 11 0.00037 19.2 1.2 14 78-91 10-23 (46)
240 2yso_A ZFP-95, zinc finger pro 41.5 11 0.00038 19.1 1.3 14 78-91 10-23 (46)
241 1lko_A Rubrerythrin all-iron(I 41.4 7.9 0.00027 27.6 0.8 11 80-90 155-165 (191)
242 2ytm_A Zinc finger protein 28 41.3 9.6 0.00033 19.5 1.0 15 78-92 10-24 (46)
243 2epq_A POZ-, at HOOK-, and zin 41.1 18 0.00063 18.2 2.1 13 75-87 33-45 (45)
244 2eoe_A Zinc finger protein 347 40.9 8.1 0.00028 19.6 0.6 14 78-91 10-23 (46)
245 1vq8_Z 50S ribosomal protein L 40.5 9.3 0.00032 24.2 1.0 12 79-90 44-55 (83)
246 1x5w_A Zinc finger protein 64, 39.5 16 0.00056 20.3 1.9 26 66-91 19-48 (70)
247 1e7l_A GP49, recombination end 38.5 10 0.00034 27.0 1.0 20 79-98 19-40 (157)
248 2ebt_A Krueppel-like factor 5; 38.2 25 0.00084 20.6 2.7 26 66-91 57-86 (100)
249 2epr_A POZ-, at HOOK-, and zin 37.8 21 0.00071 18.3 2.0 28 59-88 17-48 (48)
250 2kmk_A Zinc finger protein GFI 37.6 22 0.00074 19.9 2.2 15 77-91 54-68 (82)
251 2d9g_A YY1-associated factor 2 37.4 12 0.00042 21.7 1.1 11 78-88 9-19 (53)
252 1fv5_A First zinc finger of U- 37.4 9.7 0.00033 19.9 0.6 13 79-91 7-19 (36)
253 2kkx_A Uncharacterized protein 37.2 16 0.00053 24.4 1.7 33 41-76 27-65 (102)
254 2en6_A Zinc finger protein 268 37.0 11 0.00036 19.2 0.7 14 78-91 10-23 (46)
255 1a1h_A QGSR zinc finger peptid 36.5 23 0.0008 20.2 2.3 15 77-91 59-73 (90)
256 2k1p_A Zinc finger RAN-binding 36.4 13 0.00045 19.4 1.0 12 77-88 3-14 (33)
257 2d9h_A Zinc finger protein 692 36.2 14 0.00048 21.0 1.2 13 79-91 6-18 (78)
258 2jr6_A UPF0434 protein NMA0874 36.1 12 0.00042 22.8 1.0 32 42-94 9-40 (68)
259 3mjh_B Early endosome antigen 36.1 12 0.00042 20.0 0.8 11 81-91 6-16 (34)
260 2jny_A Uncharacterized BCR; st 35.4 12 0.00042 22.8 0.9 31 42-93 11-41 (67)
261 2ct1_A Transcriptional repress 35.2 13 0.00045 21.1 1.0 26 66-91 25-56 (77)
262 3iuf_A Zinc finger protein UBI 34.7 14 0.00047 19.4 1.0 13 79-91 6-18 (48)
263 3gox_A Restriction endonucleas 34.7 30 0.001 25.5 3.0 19 80-98 137-158 (200)
264 2wbs_A Krueppel-like factor 4; 34.6 26 0.0009 20.0 2.3 15 77-91 62-76 (89)
265 2hf1_A Tetraacyldisaccharide-1 34.5 13 0.00045 22.7 0.9 32 42-94 9-40 (68)
266 2ctd_A Zinc finger protein 512 34.1 24 0.00082 21.6 2.2 34 56-91 36-73 (96)
267 2dlk_A Novel protein; ZF-C2H2 33.6 26 0.00091 19.6 2.2 13 78-90 66-78 (79)
268 2csh_A Zinc finger protein 297 33.4 29 0.00098 20.9 2.4 11 80-90 65-75 (110)
269 2pk7_A Uncharacterized protein 33.2 12 0.00042 22.8 0.6 32 42-94 9-40 (69)
270 2jvm_A Uncharacterized protein 33.2 2.2 7.7E-05 27.3 -2.9 23 71-93 44-66 (80)
271 2ee8_A Protein ODD-skipped-rel 33.0 32 0.0011 20.4 2.6 11 80-90 45-55 (106)
272 2dmd_A Zinc finger protein 64, 32.5 28 0.00096 20.2 2.2 15 77-91 61-75 (96)
273 2js4_A UPF0434 protein BB2007; 32.1 15 0.0005 22.5 0.9 32 42-94 9-40 (70)
274 2gqj_A Zinc finger protein KIA 32.0 13 0.00045 22.5 0.6 12 79-90 23-34 (98)
275 2i50_A Ubiquitin carboxyl-term 31.7 18 0.00062 24.4 1.4 34 56-89 3-37 (126)
276 2yt9_A Zinc finger-containing 31.7 30 0.001 20.1 2.2 13 79-91 64-76 (95)
277 2cr8_A MDM4 protein; ZF-ranbp 31.2 19 0.00065 21.2 1.2 12 78-89 9-20 (53)
278 2ebr_A Nuclear pore complex pr 30.7 16 0.00054 20.8 0.8 13 77-89 8-20 (47)
279 1jvr_A HTLV-II MA, MA, human T 30.6 19 0.00066 24.8 1.3 20 67-86 46-65 (137)
280 2c6a_A Ubiquitin-protein ligas 30.6 18 0.00061 20.8 1.0 11 79-89 12-22 (46)
281 2d9k_A FLN29 gene product; zin 30.2 19 0.00064 21.2 1.1 46 51-96 11-59 (75)
282 1vd4_A Transcription initiatio 30.0 47 0.0016 18.2 2.8 27 66-92 24-51 (62)
283 1oqe_K Tumor necrosis factor r 29.9 19 0.00064 19.0 0.9 11 58-68 2-12 (31)
284 2kwj_A Zinc finger protein DPF 29.5 6.7 0.00023 25.7 -1.2 25 62-86 34-58 (114)
285 1llm_C Chimera of ZIF23-GCN4; 29.1 36 0.0012 19.6 2.3 15 77-91 28-42 (88)
286 3v43_A Histone acetyltransfera 28.6 7.7 0.00026 25.3 -1.0 27 61-87 36-62 (112)
287 2lcq_A Putative toxin VAPC6; P 28.2 12 0.0004 25.7 -0.1 28 53-90 131-158 (165)
288 2dlq_A GLI-kruppel family memb 28.0 42 0.0014 20.2 2.5 26 66-91 76-105 (124)
289 2jp9_A Wilms tumor 1; DNA bind 27.3 39 0.0013 20.3 2.3 12 79-90 65-76 (119)
290 1yc5_A NAD-dependent deacetyla 26.7 32 0.0011 25.1 2.1 32 59-92 126-157 (246)
291 2cot_A Zinc finger protein 435 26.6 57 0.0019 18.2 2.8 32 58-91 22-57 (77)
292 1sp2_A SP1F2; zinc finger, tra 26.2 27 0.00093 15.7 1.1 12 80-91 2-15 (31)
293 1zfd_A SWI5; DNA binding motif 25.8 29 0.001 15.7 1.2 12 80-91 3-16 (32)
294 2k0a_A PRE-mRNA-splicing facto 25.6 23 0.0008 23.7 1.0 17 80-96 29-45 (109)
295 4gzn_C ZFP-57, zinc finger pro 25.0 43 0.0015 19.0 2.0 31 59-91 9-43 (60)
296 2ab3_A ZNF29; zinc finger prot 24.2 24 0.00081 15.3 0.6 12 80-91 2-15 (29)
297 2lri_C Autoimmune regulator; Z 24.1 31 0.001 20.6 1.3 14 78-91 48-61 (66)
298 2gmg_A Hypothetical protein PF 23.6 34 0.0012 22.7 1.5 32 49-89 62-93 (105)
299 2l5u_A Chromodomain-helicase-D 23.6 19 0.00065 21.0 0.2 13 77-89 46-58 (61)
300 1w7p_D VPS36P, YLR417W; ESCRT- 23.3 17 0.00059 30.6 0.0 10 78-87 115-124 (566)
301 1f62_A Transcription factor WS 22.7 25 0.00086 19.3 0.6 11 78-88 39-49 (51)
302 2ctu_A Zinc finger protein 483 22.6 35 0.0012 18.5 1.3 14 78-91 16-29 (73)
303 2e72_A POGO transposable eleme 22.6 38 0.0013 19.6 1.4 16 77-92 9-24 (49)
304 2dmi_A Teashirt homolog 3; zin 22.0 32 0.0011 20.8 1.1 14 78-91 78-91 (115)
305 2ebq_A Nuclear pore complex pr 21.9 30 0.001 19.7 0.9 12 78-89 9-20 (47)
306 1mm2_A MI2-beta; PHD, zinc fin 21.6 30 0.001 20.0 0.9 24 61-89 31-56 (61)
307 3k1l_B Fancl; UBC, ring, RWD, 21.5 22 0.00074 28.7 0.2 50 40-91 307-372 (381)
308 2crc_A Ubiquitin conjugating e 21.4 27 0.00094 20.2 0.6 11 78-88 8-18 (52)
309 1l1o_C Replication protein A 7 20.9 29 0.00099 24.3 0.8 14 77-90 59-72 (181)
310 2lv9_A Histone-lysine N-methyl 20.9 16 0.00053 23.4 -0.6 25 60-88 51-75 (98)
311 2dmj_A Poly (ADP-ribose) polym 20.7 58 0.002 21.1 2.2 22 77-98 22-43 (106)
312 2hfg_R Tumor necrosis factor r 20.7 34 0.0012 19.9 0.9 11 58-68 14-24 (51)
313 1a7i_A QCRP2 (LIM1); LIM domai 20.5 49 0.0017 19.4 1.7 16 79-94 6-21 (81)
314 1ffk_W Ribosomal protein L37AE 20.4 32 0.0011 21.4 0.8 12 77-88 24-35 (73)
315 1fp0_A KAP-1 corepressor; PHD 20.4 43 0.0015 21.3 1.5 15 77-91 60-74 (88)
316 1ncs_A Peptide M30F, transcrip 20.4 49 0.0017 16.9 1.5 15 78-92 16-32 (47)
317 2kpi_A Uncharacterized protein 20.1 25 0.00084 20.5 0.2 15 79-93 9-23 (56)
No 1
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=100.00 E-value=8.5e-34 Score=228.15 Aligned_cols=103 Identities=47% Similarity=0.775 Sum_probs=90.1
Q ss_pred hHHHHhccCCChHHHH-HHHHHhccCCCCceeeeeeeeeecCCCccccccccccccccCccceecHHHHHHHhcCCCcee
Q psy8140 4 IVSLIAHLMRDIAFSR-YIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWN 82 (108)
Q Consensus 4 l~~l~~~~~~~~~~~~-~i~~~~~~~~Dddi~~~~~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~ 82 (108)
|++|++++.++++.++ .|++++..++|+||++++..|||+||||++||++|+||..|.|+||||+++||+|+++.++|+
T Consensus 177 lq~l~~k~~~~~e~t~~~Ik~~l~~d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~ 256 (360)
T 4fo9_A 177 LQRLKMKGIRNPDHSRALIKEKLTADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWI 256 (360)
T ss_dssp HHHHHTC-CBCHHHHHHHHHHHHC---------CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCB
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhccCCccceeeeeeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeE
Confidence 6889999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccCCCeeehhhhhhhhh
Q psy8140 83 CPVCDKVGHLILLCMAMIESVCLF 106 (108)
Q Consensus 83 CPiC~~~~~~~dL~iD~~~~~~l~ 106 (108)
||+|++.+.+++|+||+|+++||-
T Consensus 257 CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 257 CPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp CTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred CCCCCcccCHHHeEEcHHHHHHHH
Confidence 999999999999999999999984
No 2
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.2e-33 Score=224.24 Aligned_cols=103 Identities=28% Similarity=0.522 Sum_probs=92.7
Q ss_pred hHHHHhccCCChHHHH-HHHHHhccCCCCceeeeeeeeeecCCCccccccccccccccCccceecHHHHHHHhcCCCcee
Q psy8140 4 IVSLIAHLMRDIAFSR-YIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWN 82 (108)
Q Consensus 4 l~~l~~~~~~~~~~~~-~i~~~~~~~~Dddi~~~~~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~ 82 (108)
+++|++++.++++.+. .|++.+.+++||||++++..|||+||||++||++|+||+.|.|+||||+++||+++++.++|+
T Consensus 211 l~~I~~~~~i~~e~tl~~Ik~~ls~d~DdDIv~~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~ 290 (371)
T 3i2d_A 211 LEKVLQHPKIIKQATLLYLKKTLREDEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQ 290 (371)
T ss_dssp HHHHHTSCCBCHHHHHHHHHHHHHSCC------CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCB
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhccCCCCceeeeeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCcee
Confidence 5678889999999888 899999889999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccCCCeeehhhhhhhhh
Q psy8140 83 CPVCDKVGHLILLCMAMIESVCLF 106 (108)
Q Consensus 83 CPiC~~~~~~~dL~iD~~~~~~l~ 106 (108)
||||++.+.+++|+||+|++++|-
T Consensus 291 CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 291 CPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp CTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred CCCCCcccCHHHeeEcHHHHHHHH
Confidence 999999999999999999999984
No 3
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.46 E-value=3.1e-14 Score=110.70 Aligned_cols=75 Identities=17% Similarity=0.321 Sum_probs=69.3
Q ss_pred CCCCceeeeeeeeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceeccc--CCCcccCCCeeehhhhhhh
Q psy8140 28 ENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPV--CDKVGHLILLCMAMIESVC 104 (108)
Q Consensus 28 ~~Dddi~~~~~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPi--C~~~~~~~dL~iD~~~~~~ 104 (108)
++||||++++...+++||||+..|+.||++..|+|. |+...+.++....+.|.||+ |++.+..++|+.|..+..+
T Consensus 168 ~dDDDI~v~~~~~el~CPIcl~~f~DPVts~~CGHs--FcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~l 244 (267)
T 3htk_C 168 ADEDDLQIEGGKIELTCPITCKPYEAPLISRKCNHV--FDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELR 244 (267)
T ss_dssp TCSSCCCCCSSBCCSBCTTTSSBCSSEEEESSSCCE--EEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHH
T ss_pred CCCccceecCCceeeECcCccCcccCCeeeCCCCCc--ccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHH
Confidence 467899999999999999999999999999999997 99999999987778899999 9999999999999887654
No 4
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.51 E-value=6e-08 Score=62.53 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=55.4
Q ss_pred CCceeeeeeeeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeeehhhhhh
Q psy8140 30 DSEIKTLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMAMIESV 103 (108)
Q Consensus 30 Dddi~~~~~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD~~~~~ 103 (108)
++|.......-.+.|||++..|+.||... |.|. |+...+...... ...||+|++.+..++|+-+..+..
T Consensus 3 ~~e~~~~~~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~l~pn~~L~~ 71 (85)
T 2kr4_A 3 SAEIDYSDAPDEFRDPLMDTLMTDPVRLP-SGTV--MDRSIILRHLLN--SPTDPFNRQMLTESMLEPVPELKE 71 (85)
T ss_dssp CCCCCCTTCCTTTBCTTTCSBCSSEEECT-TSCE--EEHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHHHH
T ss_pred hhhhhhhcCchheECcccCchhcCCeECC-CCCE--ECHHHHHHHHhc--CCCCCCCcCCCChHhcchHHHHHH
Confidence 34444445556799999999999999987 9998 999988887554 368999999999999998866644
No 5
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=7.8e-08 Score=62.87 Aligned_cols=64 Identities=27% Similarity=0.451 Sum_probs=53.4
Q ss_pred eeeecCCCccccccccccccccCccceecHHHHHHHhcC----CCceeccc--CCCc-ccCCCeeehhhhhhh
Q psy8140 39 TSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNEL----KPKWNCPV--CDKV-GHLILLCMAMIESVC 104 (108)
Q Consensus 39 ~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~----~~~W~CPi--C~~~-~~~~dL~iD~~~~~~ 104 (108)
.-.+.|||++..|+.||....|.|. |+...+..+... .+...||+ |.+. +..++|+-|..+..+
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~--f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~ 75 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT--YEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRA 75 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE--EEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHH
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe--ecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHH
Confidence 4568999999999999999889998 999988876443 35789999 8877 889999998776554
No 6
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.44 E-value=7.6e-08 Score=59.00 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=45.9
Q ss_pred eeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeee
Q psy8140 40 SSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCM 97 (108)
Q Consensus 40 vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~i 97 (108)
+++.||||+..|+.||....+.|. ||.+++.++-.+.+ .||++++++..+||+-
T Consensus 2 ~~~~CpIs~~~m~dPV~~~~sG~~--yer~~I~~~l~~~~--~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 2 SHMLCAISGKVPRRPVLSPKSRTI--FEKSLLEQYVKDTG--NDPITNEPLSIEEIVE 55 (61)
T ss_dssp --CCCTTTCSCCSSEEEETTTTEE--EEHHHHHHHHHHHS--BCTTTCCBCCGGGCEE
T ss_pred CeEEecCCCCCCCCCEEeCCCCcE--EcHHHHHHHHHhCC--CCcCCcCCCChhhcEE
Confidence 468999999999999999889998 99999998765544 4999999999988863
No 7
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.26 E-value=7e-07 Score=59.35 Aligned_cols=64 Identities=11% Similarity=-0.012 Sum_probs=53.2
Q ss_pred eeeeeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeeehhhhhhh
Q psy8140 36 LELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMAMIESVC 104 (108)
Q Consensus 36 ~~~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD~~~~~~ 104 (108)
....-.+.|||++..|+.||... |.|. ||...+...... ...||+|++++..++|+-+..+...
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~ 87 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLP-SGTI--MDRSIILRHLLN--SPTDPFNRQTLTESMLEPVPELKEQ 87 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEET-TTEE--EEHHHHHHHTTS--CSBCSSSCCBCCTTSSEECHHHHHH
T ss_pred ccCcHhhCCcCccCcccCCeECC-CCCE--EchHHHHHHHHc--CCCCCCCCCCCChhhceECHHHHHH
Confidence 34445699999999999999987 9998 999988887654 4689999999999999988766543
No 8
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.20 E-value=1.5e-06 Score=57.47 Aligned_cols=64 Identities=9% Similarity=-0.053 Sum_probs=52.2
Q ss_pred eeeeeeecCCCccccccccccccccC-ccceecHHHHHHHhcCCCceecccCCCcccCCCeeehhhhhhh
Q psy8140 36 LELTSSLICPLGKMRMAFPTKASTCA-HLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMAMIESVC 104 (108)
Q Consensus 36 ~~~~vsL~CPlS~~ri~~P~Rg~~C~-H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD~~~~~~ 104 (108)
....-.+.|||++..|+.||.. .|. |. ||...+...... ...||+|++++..++|+-+..+...
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~-~cG~ht--f~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~ 81 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVL-PSSRVT--VDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEK 81 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEEC-TTTCCE--EEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeEC-CCCCeE--ECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHH
Confidence 3444568999999999999996 577 98 999988887654 3589999999999999988766543
No 9
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.11 E-value=3e-06 Score=52.58 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=49.9
Q ss_pred eecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeeehhhhhhh
Q psy8140 41 SLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMAMIESVC 104 (108)
Q Consensus 41 sL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD~~~~~~ 104 (108)
.+.|||.+..++.|+.. .|.|. |...-+..+..+ +...||+|++.+..++|..+..+..+
T Consensus 8 ~~~C~IC~~~~~~Pv~~-~CgH~--fc~~Ci~~~~~~-~~~~CP~C~~~~~~~~l~~n~~l~~~ 67 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIV-STGQT--YERSSIQKWLDA-GHKTCPKSQETLLHAGLTPNYVLKSL 67 (78)
T ss_dssp SSSCTTTSCCCSSEEEE-TTTEE--EEHHHHHHHHTT-TCCBCTTTCCBCSSCCCEECTTTHHH
T ss_pred cCCCCCccccccCCEEc-CCCCe--ecHHHHHHHHHH-CcCCCCCCcCCCChhhCccCHHHHHH
Confidence 58999999999999986 69999 888887776643 46889999999999999887665543
No 10
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.05 E-value=3.2e-06 Score=61.99 Aligned_cols=61 Identities=11% Similarity=-0.070 Sum_probs=51.5
Q ss_pred eeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeeehhhhhh
Q psy8140 39 TSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMAMIESV 103 (108)
Q Consensus 39 ~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD~~~~~ 103 (108)
.-.+.||||+..|+.||.. .|.|. ||...+.......+. .||+|++++...+|+-+..+..
T Consensus 104 p~~f~CPI~~elm~DPV~~-~~Ght--fer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~ 164 (179)
T 2f42_A 104 PDYLCGKISFELMREPCIT-PSGIT--YDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKE 164 (179)
T ss_dssp CGGGBCTTTCSBCSSEEEC-TTSCE--EEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHH
T ss_pred cHhhcccCccccCCCCeEC-CCCCE--ECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHH
Confidence 4568999999999999998 69998 999998887655444 6999999999999998766544
No 11
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.85 E-value=6.6e-06 Score=60.89 Aligned_cols=61 Identities=11% Similarity=-0.056 Sum_probs=49.1
Q ss_pred eeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeeehhhhhhh
Q psy8140 40 SSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMAMIESVC 104 (108)
Q Consensus 40 vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD~~~~~~ 104 (108)
-.+.|||++..|+.||... |.|. |+...+...-...+. .||+|+++++..+|+.+..+..+
T Consensus 207 ~~~~c~i~~~~~~dPv~~~-~gh~--f~~~~i~~~~~~~~~-~cP~~~~~~~~~~l~~n~~l~~~ 267 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITP-SGIT--YDRKDIEEHLQRVGH-FNPVTRSPLTQEQLIPNLAMKEV 267 (281)
T ss_dssp STTBCTTTCSBCSSEEECS-SCCE--EETTHHHHHHHHTCS-SCTTTCCCCCGGGCEECHHHHHH
T ss_pred cccCCcCcCCHhcCCeECC-CCCE--ECHHHHHHHHHHCCC-CCcCCCCCCchhcCcccHHHHHH
Confidence 4588999999999999976 9998 888887776544332 39999999999999988665543
No 12
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.82 E-value=1.4e-05 Score=50.89 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=49.6
Q ss_pred eeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcc-cCCCeeehhhhhhhh
Q psy8140 40 SSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVG-HLILLCMAMIESVCL 105 (108)
Q Consensus 40 vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~-~~~dL~iD~~~~~~l 105 (108)
-.+.|||-+..+..|+.-..|.|. |-..=+.......+...||+|.+.+ ..+++..+..+..++
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~--fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i 76 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNS--YCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAV 76 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCE--ECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHH
T ss_pred cCCCCCCCChhhcCceECCCCCCH--HHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHH
Confidence 358899999999999987669999 6655555554444568999999997 678898887776553
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=7.1e-05 Score=44.93 Aligned_cols=55 Identities=13% Similarity=0.288 Sum_probs=42.7
Q ss_pred eeeeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCe
Q psy8140 37 ELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILL 95 (108)
Q Consensus 37 ~~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL 95 (108)
...-.+.|||-+..++.|+. ..|.|. |-..=+.+... .....||+|++.+..+++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~--fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQ-TECGHR--FCESCMAALLS-SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCC-CSSSCC--CCHHHHHHHHT-TSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeE-CCCCCH--HHHHHHHHHHH-hCcCCCCCCCcCCChhhc
Confidence 34456899999999999999 699999 55555555443 456789999999988776
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.55 E-value=4.8e-05 Score=46.97 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=47.0
Q ss_pred eeeecCCCccccccccccccccCccceecHHHHHHHhcC----CCceecccCCCcccCCCeeehhhhhhh
Q psy8140 39 TSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNEL----KPKWNCPVCDKVGHLILLCMAMIESVC 104 (108)
Q Consensus 39 ~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~----~~~W~CPiC~~~~~~~dL~iD~~~~~~ 104 (108)
.-.+.|||-+..+..|+. ..|.|. |-..=+..+... .+...||+|++.+..+++..+..+..+
T Consensus 17 ~~~~~C~IC~~~~~~p~~-~~CgH~--fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVS-ADCNHS--FCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CTTTSCTTTCSCCSSCEE-CTTSCC--BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred ccCCCCcCCChhhCccee-CCCCCH--HHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 345789999999999996 469999 444444443322 357899999999999999888665543
No 15
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=0.00014 Score=44.09 Aligned_cols=57 Identities=21% Similarity=0.412 Sum_probs=44.3
Q ss_pred eeeeeecCCCccccccccccccccCccceecHHHHHHHhc-CCCceecccCCCcccCCCee
Q psy8140 37 ELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNE-LKPKWNCPVCDKVGHLILLC 96 (108)
Q Consensus 37 ~~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~-~~~~W~CPiC~~~~~~~dL~ 96 (108)
...-.+.|||-+..+..|+.- .|.|. |-..=+..+.. ......||+|++.+..++++
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~-~CgH~--fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTI-DCGHN--FCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEEC-TTCCE--EEHHHHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEc-CCCCh--hhHHHHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 344568999999999999987 99999 66665555543 24567999999999988764
No 16
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.47 E-value=0.00015 Score=46.73 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=48.7
Q ss_pred eeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeeehhhhhhhh
Q psy8140 40 SSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMAMIESVCL 105 (108)
Q Consensus 40 vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD~~~~~~l 105 (108)
-.+.|||-+..+..|+.-..|.|. |-..=+...... ...||+|++.+...++..+..+..++
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~--fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~l~~n~~l~~~i 82 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHN--YCSLCIRKFLSY--KTQCPTCCVTVTEPDLKNNRILDELV 82 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE--EEHHHHHHHHTT--CCBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred CCCCcccCChhhCCcCEECCCCCH--hhHHHHHHHHHC--CCCCCCCCCcCChhhCCcCHHHHHHH
Confidence 357899999999999988899998 555555444433 36899999999999998887766554
No 17
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=6.7e-05 Score=46.31 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=47.4
Q ss_pred eeeeecCCCccccccccccccccCccceecHH-HHHHH-hcCCCceecccCCCcccCCCeeehhhhhhh
Q psy8140 38 LTSSLICPLGKMRMAFPTKASTCAHLQCFDGA-TFIKM-NELKPKWNCPVCDKVGHLILLCMAMIESVC 104 (108)
Q Consensus 38 ~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~-~fl~~-~~~~~~W~CPiC~~~~~~~dL~iD~~~~~~ 104 (108)
..-.+.|||-+..+..|+.- .|.|.-|.+-- .++.. ....+...||+|++.+..+++..+..+..+
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred ccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 34468999999999999885 79998554432 23332 113457899999999999988877655443
No 18
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.34 E-value=0.00022 Score=47.78 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=46.8
Q ss_pred eeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccC-CCeeehhhhhhhh
Q psy8140 39 TSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHL-ILLCMAMIESVCL 105 (108)
Q Consensus 39 ~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~-~dL~iD~~~~~~l 105 (108)
.-.+.|||-+..+..|+.- .|.|. |-..=+..... .+...||+|.+.+.. .++..+..+..++
T Consensus 50 ~~~~~C~IC~~~~~~p~~~-~CgH~--fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i 113 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITT-VCQHN--VCKDCLDRSFR-AQVFSCPACRYDLGRSYAMQVNQPLQTVL 113 (124)
T ss_dssp HHHTBCTTTSSBCSSEEEC-TTSCE--EEHHHHHHHHH-TTCCBCTTTCCBCCTTCCCCCCHHHHHHH
T ss_pred ccCCCCCcCChHHcCcEEe-eCCCc--ccHHHHHHHHh-HCcCCCCCCCccCCCCCCCCCCHHHHHHH
Confidence 3458899999999999886 89999 54443333332 345699999999987 7888887766554
No 19
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.34 E-value=0.00028 Score=46.21 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=48.7
Q ss_pred eeeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCC----Ceeehhhhhhhh
Q psy8140 38 LTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLI----LLCMAMIESVCL 105 (108)
Q Consensus 38 ~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~----dL~iD~~~~~~l 105 (108)
..-.+.|||-+..+..|+.-..|.|. |-..=+...... ...||+|++.+... +|..|..+..++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~--fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i 79 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHS--FCKTCIVRYLET--SKYCPICDVQVHKTRPLLNIRSDKTLQDIV 79 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCE--EEHHHHHHHHTS--CSBCTTTCCBSCSSCGGGGEEECHHHHHHH
T ss_pred cCCcCCCccCChHHhCcCEeCCCCCh--hhHHHHHHHHHh--CCcCcCCCccccccCcccccCcCHHHHHHH
Confidence 33458899999999999998899999 555555554433 27899999999876 788887666554
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.25 E-value=4.8e-05 Score=46.76 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=45.9
Q ss_pred eeecCCCccccccccccccccCccceecHHHHHHHhcC-----CCceecccCCCcccCCCeeehhhhhhh
Q psy8140 40 SSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNEL-----KPKWNCPVCDKVGHLILLCMAMIESVC 104 (108)
Q Consensus 40 vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~-----~~~W~CPiC~~~~~~~dL~iD~~~~~~ 104 (108)
-.+.|||-+..+..|+.- .|.|. |-..=+.++... .....||+|++.+...+|..+..+..+
T Consensus 11 ~~~~C~IC~~~~~~p~~l-~CgH~--fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSL-DCGHS--LCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCEETTTTEECSSCCCC-SSSCC--CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred cCCCCcCCCcccCCeeEC-CCCCH--HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 357899999999999884 89999 555444433322 347899999999999888877665443
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.21 E-value=0.00026 Score=46.14 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=42.3
Q ss_pred eecCCCccccccccccccccCccceecHHHHHHHh-cCCCceecccCCCcccCCCeeehhh
Q psy8140 41 SLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMN-ELKPKWNCPVCDKVGHLILLCMAMI 100 (108)
Q Consensus 41 sL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~-~~~~~W~CPiC~~~~~~~dL~iD~~ 100 (108)
.+.|||-+..+..|+. ..|.|.-|.+ =+.... ...+...||+|++.+...++..+..
T Consensus 21 ~~~C~IC~~~~~~p~~-~~CgH~fC~~--Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 78 (112)
T 1jm7_A 21 ILECPICLELIKEPVS-TKCDHIFCKF--CMLKLLNQKKGPSQCPLCKNDITKRSLQESTR 78 (112)
T ss_dssp HTSCSSSCCCCSSCCB-CTTSCCCCSH--HHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCS
T ss_pred CCCCcccChhhcCeEE-CCCCCHHHHH--HHHHHHHhCCCCCCCcCCCCcCCHhhcCccHH
Confidence 4689999999999998 4899995543 333332 2345589999999999888876533
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.18 E-value=0.00015 Score=44.71 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=40.0
Q ss_pred eeeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCe
Q psy8140 38 LTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILL 95 (108)
Q Consensus 38 ~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL 95 (108)
..-.+.|||-+..+..|+.-..|.|.-|. .=+.......+...||+|.+.+...+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~--~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSYCD--ECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEECT--THHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHHHH--HHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 34568999999999999997669999444 444444333445789999997654443
No 23
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.17 E-value=0.00027 Score=47.15 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=48.7
Q ss_pred eeeeeeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeeehhhhhhhh
Q psy8140 35 TLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMAMIESVCL 105 (108)
Q Consensus 35 ~~~~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD~~~~~~l 105 (108)
+....-.+.|||-+..+..|+.- .|.|. |-..=+.......+ ..||+|++.+...++.-|..+...+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~--fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~~~~~~~l~~~i 78 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQT-PCGHR--FCKACIIKSIRDAG-HKCPVDNEILLENQLFPDNFAKREI 78 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEEC-TTSCE--EEHHHHHHHHHHHC-SBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred ccCCCCCCCCCcCChhhcCeEEC-CcCCh--hhHHHHHHHHhhCC-CCCCCCCCCcCHHhcccCHHHHHHH
Confidence 34555668999999999999885 79999 54444444322222 3899999999999888887665543
No 24
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.16 E-value=0.00034 Score=45.50 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=46.6
Q ss_pred eeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeeehhhhhhh
Q psy8140 39 TSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMAMIESVC 104 (108)
Q Consensus 39 ~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD~~~~~~ 104 (108)
.-.+.|||=+..+..|+.-..|.|. |-..=+....... ...||+|.+.+..++|+-..++..+
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~--FC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~l~~~~~~~~i 82 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKL--CCFSCIRRWLTEQ-RAQCPHCRAPLQLRELVNCRWAEEV 82 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCE--EEHHHHHHHHHHT-CSBCTTTCCBCCGGGCEECTTHHHH
T ss_pred CCCCCCccCCccccCccccCCCCCh--hhHHHHHHHHHHC-cCCCCCCCCcCCHHHhHhhHHHHHH
Confidence 3458899999999999987899999 5444444433222 2789999999999998876655443
No 25
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.14 E-value=0.00046 Score=48.38 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=47.7
Q ss_pred eeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCC-Ceeehhhhhhhh
Q psy8140 39 TSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLI-LLCMAMIESVCL 105 (108)
Q Consensus 39 ~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~-dL~iD~~~~~~l 105 (108)
.-.+.|||-+..+..|+. ..|.|. |-..=+..... .....||+|.+.+... +|..+..+..++
T Consensus 76 ~~~~~C~IC~~~~~~pv~-~~CgH~--fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv 139 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVT-TECFHN--VCKDCLQRSFK-AQVFSCPACRHDLGQNYIMIPNEILQTLL 139 (150)
T ss_dssp HHHTBCTTTSSBCSSEEE-CTTSCE--EEHHHHHHHHH-TTCCBCTTTCCBCCTTCCCCBCHHHHHHH
T ss_pred ccCCEeecCChhhcCCEE-cCCCCc--hhHHHHHHHHH-hCCCcCCCCCccCCCCCCCCCCHHHHHHH
Confidence 345899999999999999 699998 44444444333 2456899999999988 788877766654
No 26
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.09 E-value=0.00029 Score=49.39 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=47.7
Q ss_pred eeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcc-cCCCeeehhhhhhhh
Q psy8140 39 TSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVG-HLILLCMAMIESVCL 105 (108)
Q Consensus 39 ~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~-~~~dL~iD~~~~~~l 105 (108)
.-.+.|||-+..+..|+.-..|.|. |-..=+..+.. .+...||+|++.+ ..++|..|..+..++
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~--fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i 116 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHR--FCADCIITALR-SGNKECPTCRKKLVSKRSLRPDPNFDALI 116 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCE--EEHHHHHHHHH-TTCCBCTTTCCBCCSGGGEEECHHHHHHH
T ss_pred CCCCCCcccChHhhCcCEeCCCCCh--hHHHHHHHHHH-hCcCCCCCCCCcCCCcccCCcCHHHHHHH
Confidence 3457999999999999998899999 55544444433 2357899999998 456788777666554
No 27
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.05 E-value=0.00044 Score=42.11 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=41.0
Q ss_pred eeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCee
Q psy8140 39 TSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLC 96 (108)
Q Consensus 39 ~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~ 96 (108)
.-.+.|||=+..+..|+.-..|.|. |-..=+.+..+. ..+||+|.+.+...++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~--fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHT--FCKSCIVRHFYY--SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCE--ECHHHHHHHHHH--CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCH--HHHHHHHHHHHc--CCcCCCcCcccCccccc
Confidence 4468999999999999998899999 444443333222 46899999999887764
No 28
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.97 E-value=0.00077 Score=40.13 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=39.7
Q ss_pred ecCCCccc-ccccccc---ccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeeeh
Q psy8140 42 LICPLGKM-RMAFPTK---ASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMA 98 (108)
Q Consensus 42 L~CPlS~~-ri~~P~R---g~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD 98 (108)
+.|||-+. .+..|.+ ...|.|. |-..=+.++..+ +..+||+|++.+..++++-.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~--fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHT--LCESCVDLLFVR-GAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCC--EEHHHHHHHHHT-TSSSCTTTCCCCSSCCCEEE
T ss_pred CcCCcCCCCccCCCccCeecCCCCCH--hHHHHHHHHHHc-CCCcCCCCCCccccccceee
Confidence 57999999 8889974 5689999 444444444222 45789999999998888643
No 29
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.96 E-value=0.00028 Score=46.98 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=44.9
Q ss_pred eecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeeehhhhhhhh
Q psy8140 41 SLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMAMIESVCL 105 (108)
Q Consensus 41 sL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD~~~~~~l 105 (108)
.+.|||-+..+..|+.-..|.|.-|..- +..... ..||+|++.+...+|..+..+..++
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~C--i~~~~~----~~CP~Cr~~~~~~~~~~n~~l~~l~ 80 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNC--VSDCIG----TGCPVCYTPAWIQDLKINRQLDSMI 80 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTT--GGGGTT----TBCSSSCCBCSCSSCCCCHHHHHHH
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHH--HHHHhc----CCCcCCCCcCccccccccHHHHHHH
Confidence 4899999999999999889999855432 111111 5799999999999998887666543
No 30
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.92 E-value=0.0012 Score=40.83 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=39.6
Q ss_pred eeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeeeh
Q psy8140 40 SSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMA 98 (108)
Q Consensus 40 vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD 98 (108)
..+.|||-+..+..|+. ..|.|. |-..=+..+... ...||+|++.+. ..+..+
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~CgH~--fC~~Ci~~~~~~--~~~CP~Cr~~~~-~~~~~~ 66 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVV-TKCRHY--FCESCALEHFRA--TPRCYICDQPTG-GIFNPA 66 (81)
T ss_dssp CCSBCSSSCSBCCSEEE-CTTSCE--EEHHHHHHHHHH--CSBCSSSCCBCC-SCCEEC
T ss_pred CCCCCcCCCchhcCeeE-ccCCCH--hHHHHHHHHHHC--CCcCCCcCcccc-ccCCcH
Confidence 46899999999999997 689999 555555544333 458999999986 555544
No 31
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.71 E-value=0.00079 Score=39.38 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=37.7
Q ss_pred ecCCCccccccccc------cccccCccceecHHHHHHHhcCCCceecccCCCcccCCCee
Q psy8140 42 LICPLGKMRMAFPT------KASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLC 96 (108)
Q Consensus 42 L~CPlS~~ri~~P~------Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~ 96 (108)
+.|||-+..+..|. ....|.|. |-.+=+.++..+ ...||+|++.+..+++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~--fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHV--FCSQCLRDSLKN--ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCE--EEHHHHHHHHHH--CSBCTTTCCBCTTTCEE
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCc--hhHHHHHHHHHc--CCCCCCCCccCCcccee
Confidence 57999999888874 56689998 555544444333 35899999999887764
No 32
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.70 E-value=0.0012 Score=46.38 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=49.4
Q ss_pred eeeeeeeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeeehhhhhhhh
Q psy8140 34 KTLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMAMIESVCL 105 (108)
Q Consensus 34 ~~~~~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD~~~~~~l 105 (108)
.++...-.|.|||-+..+..|+. ..|.|. |-..=+.+.....+ ..||+|++.+...++.-|.++...+
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~-~~CgH~--fC~~Ci~~~~~~~~-~~CP~Cr~~~~~~~~~~~~~~~~~i 78 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQ-TPCGHR--FCKACIIKSIRDAG-HKCPVDNEILLENQLFPDNFAKREI 78 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEE-CTTSCE--EEHHHHHHHHHHHC-SBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred hccCCCCCCCCCCCChhhcCcEE-CCCCCH--HHHHHHHHHHHhCC-CCCCCCccCcchhhhhhhHHHHHHH
Confidence 34455567899999999999998 589999 55444444332212 3999999999998888876665543
No 33
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.53 E-value=0.0013 Score=39.31 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=37.8
Q ss_pred eecCCCccccccccc------cccccCccceecHHHHHHHhcCCCceecccCCCcccCCCee
Q psy8140 41 SLICPLGKMRMAFPT------KASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLC 96 (108)
Q Consensus 41 sL~CPlS~~ri~~P~------Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~ 96 (108)
.+.|||=+..+..|+ ....|.|. |-..=+.++..+. -.||+|.+.+..+++.
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~--fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHV--FCSQCLRDSLKNA--NTCPTCRKKINHKRYH 67 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCE--EEHHHHHHHHHHC--SBCTTTCCBCCCCSCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCCh--HhHHHHHHHHHcC--CCCCCCCCccChhhee
Confidence 367999999998884 66789998 5544444433332 3899999999877764
No 34
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.47 E-value=0.00094 Score=44.01 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=44.6
Q ss_pred eecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccC-------CCeeehhhhhhhh
Q psy8140 41 SLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHL-------ILLCMAMIESVCL 105 (108)
Q Consensus 41 sL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~-------~dL~iD~~~~~~l 105 (108)
.+.|||=+..+..|+.- .|.|. |-..=+..+. ..+...||+|.+.+.. .++.+|..+..++
T Consensus 15 ~~~C~iC~~~~~~p~~~-~CgH~--fC~~Ci~~~~-~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i 82 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL-PCNHT--LCKPCFQSTV-EKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTII 82 (115)
T ss_dssp HHBCTTTCSBCSSCEEC-TTSCE--ECHHHHCCCC-CTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHH
T ss_pred CCCCccCCcccCceeEc-CCCCH--HhHHHHHHHH-hHCcCCCCCCCcccCccccccccccchhhHHHHHHH
Confidence 58899999999999987 79998 5554433332 2345799999999864 6777776665543
No 35
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.40 E-value=0.0031 Score=39.10 Aligned_cols=53 Identities=23% Similarity=0.422 Sum_probs=37.9
Q ss_pred eeecCCCccccccc----cccccccCccceecHHHHHHHhcC-CCceecccCCCcccCCCe
Q psy8140 40 SSLICPLGKMRMAF----PTKASTCAHLQCFDGATFIKMNEL-KPKWNCPVCDKVGHLILL 95 (108)
Q Consensus 40 vsL~CPlS~~ri~~----P~Rg~~C~H~qCFDl~~fl~~~~~-~~~W~CPiC~~~~~~~dL 95 (108)
-.+.|||-+..+.. |+.- .|.|. |-..=+..+... .....||+|.+.+...++
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~--fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLL-HCGHT--ICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEEC-SSSCE--EEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred CCCCCccCCccccccCCCeEEC-CCCCh--hhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 35789999999888 7655 79998 544444443322 356899999999877653
No 36
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.22 E-value=0.0013 Score=39.86 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=37.4
Q ss_pred eecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCe
Q psy8140 41 SLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILL 95 (108)
Q Consensus 41 sL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL 95 (108)
.+.|||=+..++.|+.- .|.|. |-..=+..+... ...||+|.+.+..+++
T Consensus 15 ~~~C~IC~~~~~~~~~~-~CgH~--fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSL-PCKHV--FCYLCVKGASWL--GKRCALCRQEIPEDFL 64 (71)
T ss_dssp CCBCSSSSSBCSSEEEE-TTTEE--EEHHHHHHCTTC--SSBCSSSCCBCCHHHH
T ss_pred CCCCccCCcccCCCEEc-cCCCH--HHHHHHHHHHHC--CCcCcCcCchhCHhhc
Confidence 47899999999999876 69999 555555444333 3689999999875544
No 37
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.21 E-value=0.0036 Score=42.72 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=39.2
Q ss_pred ecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCC--Ceeehhhhhh
Q psy8140 42 LICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLI--LLCMAMIESV 103 (108)
Q Consensus 42 L~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~--dL~iD~~~~~ 103 (108)
+.|||-+..+..|+. ..|.|. |-..=+...... .-.||+|.+++... ++.+|..+..
T Consensus 54 ~~C~iC~~~~~~~~~-~~CgH~--fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~~~~~i~~ 112 (138)
T 4ayc_A 54 LQCIICSEYFIEAVT-LNCAHS--FCSYCINEWMKR--KIECPICRKDIKSKTYSLVLDNCINK 112 (138)
T ss_dssp SBCTTTCSBCSSEEE-ETTSCE--EEHHHHHHHTTT--CSBCTTTCCBCCCEEECHHHHHHHHH
T ss_pred CCCcccCcccCCceE-CCCCCC--ccHHHHHHHHHc--CCcCCCCCCcCCCCCCccchhHHHHH
Confidence 679999999999986 479998 544444444333 35799999988533 4455554433
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.21 E-value=0.0056 Score=35.95 Aligned_cols=48 Identities=25% Similarity=0.528 Sum_probs=35.7
Q ss_pred eeeeeeecCCCccccccccccccccCccceecHHHHHHHhc-CCCceecccC
Q psy8140 36 LELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNE-LKPKWNCPVC 86 (108)
Q Consensus 36 ~~~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~-~~~~W~CPiC 86 (108)
....-.+.|||=+..+..|+.- .|.|. |-..=+.+... .....+||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~--fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTI-DCGHN--FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEEC-TTSSE--ECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEe-CCCCc--chHHHHHHHHHcCCCCCcCcCC
Confidence 3445568999999999999987 89999 55555555433 3456789998
No 39
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.17 E-value=0.003 Score=41.55 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=40.5
Q ss_pred eeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCee
Q psy8140 40 SSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLC 96 (108)
Q Consensus 40 vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~ 96 (108)
-.+.|||-+..+..|+. ..|.|. |-..=+....... ...||+|++.+...++.
T Consensus 22 ~~~~C~IC~~~~~~p~~-~~CgH~--fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 22 KSISCQICEHILADPVE-TSCKHL--FCRICILRCLKVM-GSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HHTBCTTTCSBCSSEEE-CTTSCE--EEHHHHHHHHHHT-CSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCCCcHhcCcEE-cCCCCc--ccHHHHHHHHhHC-cCcCCCCCCCCCHhhcc
Confidence 46889999999999999 589999 5555444443322 35799999999888875
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.05 E-value=0.0043 Score=40.78 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=39.6
Q ss_pred eecCCCccccccccc------cccccCccceecHHHHHHHhcCCCceecccCCCcccCCCee
Q psy8140 41 SLICPLGKMRMAFPT------KASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLC 96 (108)
Q Consensus 41 sL~CPlS~~ri~~P~------Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~ 96 (108)
.+.|||=+..+..|+ ....|.|. |-..=+.+....+ -.||+|++.+...++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~--fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHV--FCSQCLRDSLKNA--NTCPTCRKKINHKRYH 64 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCE--EEHHHHHHHHTTC--SBCTTTCCBCTTTCEE
T ss_pred CCCCcccChhhhCccccccCeEecCCCCh--hhHHHHHHHHHhC--CCCCCCCCcCcccccc
Confidence 478999999999984 66789998 6665555544333 3999999999877764
No 41
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.81 E-value=0.0027 Score=44.05 Aligned_cols=60 Identities=15% Similarity=0.325 Sum_probs=43.6
Q ss_pred CCceeeeeeeeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCC
Q psy8140 30 DSEIKTLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLI 93 (108)
Q Consensus 30 Dddi~~~~~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~ 93 (108)
+.++++....-.+.|||-+..+..|+. ..|.|. |-..=+..... .+...||+|.+.+.++
T Consensus 20 ~~~~~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~--FC~~Ci~~~~~-~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 20 SKTLLGTKLEAKYLCSACRNVLRRPFQ-AQCGHR--YCSFCLASILS-SGPQNCAACVHEGIYE 79 (141)
T ss_dssp CGGGTGGGCCGGGBCTTTCSBCSSEEE-CTTSCE--EEHHHHHHHGG-GSCEECHHHHHTTCCC
T ss_pred chhhhhccCCcCcCCCCCChhhcCcEE-CCCCCc--cCHHHHHHHHh-cCCCCCCCCCCccccc
Confidence 445555666778999999999999988 499999 55544444433 3457999999876443
No 42
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=95.70 E-value=0.0049 Score=36.61 Aligned_cols=47 Identities=19% Similarity=0.363 Sum_probs=33.9
Q ss_pred eecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCccc
Q psy8140 41 SLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGH 91 (108)
Q Consensus 41 sL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~ 91 (108)
...|||-+..+..|+.-..|.|.-|++ =+..+..+ ...||+|++.+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~--Ci~~~~~~--~~~CP~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYV--CITRWIRQ--NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTT--HHHHHHHH--SCSTTTTCCCCC
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHH--HHHHHHhC--cCcCcCCChhhH
Confidence 457999999999998888999985544 33332222 258999998875
No 43
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.65 E-value=0.015 Score=33.22 Aligned_cols=45 Identities=27% Similarity=0.499 Sum_probs=34.3
Q ss_pred eeeecCCCccccccccccccccCccceecHHHHHHHhc-CCCceecccC
Q psy8140 39 TSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNE-LKPKWNCPVC 86 (108)
Q Consensus 39 ~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~-~~~~W~CPiC 86 (108)
.-.+.|||=+..++.|+. ..|.|. |-..=+.++.. ......||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~--fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVI-IECGHN--FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCC-CSSCCC--CCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEe-CCCCCc--cCHHHHHHHHHhcCCCCCCCCC
Confidence 345889999999999988 579999 66666665533 2457899998
No 44
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=95.22 E-value=0.011 Score=33.59 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=30.5
Q ss_pred ecCCCccccccc---cccccccCccceecHHHHHHHhcCCCceecccCCCccc
Q psy8140 42 LICPLGKMRMAF---PTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGH 91 (108)
Q Consensus 42 L~CPlS~~ri~~---P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~ 91 (108)
..|||-+..+.. |+.-..|.|. |-..=+.++.++ ...||+|.+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~--f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHG--FHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCE--ECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCc--ccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 468888777766 4544469998 554444444333 468999998774
No 45
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.13 E-value=0.0098 Score=36.24 Aligned_cols=54 Identities=28% Similarity=0.358 Sum_probs=36.8
Q ss_pred eeecCCCccccccccc--cccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeee
Q psy8140 40 SSLICPLGKMRMAFPT--KASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCM 97 (108)
Q Consensus 40 vsL~CPlS~~ri~~P~--Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~i 97 (108)
-...|||-+..+..|. +...|.|.-|++ =+.++... ...||+|.+.+...++.-
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~--Ci~~~~~~--~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDS--CIVPWLEQ--HDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETT--TTHHHHTT--TCSCTTTCCCCCCSCSCC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHH--HHHHHHHc--CCcCcCcCCccCCcccCC
Confidence 4578999998888664 335799984444 33333222 258999999998877653
No 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.08 E-value=0.018 Score=34.63 Aligned_cols=49 Identities=20% Similarity=0.393 Sum_probs=33.4
Q ss_pred eeeecCCCcccccccccccc--ccCccceecHHHHHHHhcCCCceecccCCCccc
Q psy8140 39 TSSLICPLGKMRMAFPTKAS--TCAHLQCFDGATFIKMNELKPKWNCPVCDKVGH 91 (108)
Q Consensus 39 ~vsL~CPlS~~ri~~P~Rg~--~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~ 91 (108)
.....|||=+..+..|..-. .|.|. |-..=+.++.... ..||+|.+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~--f~~~Ci~~~~~~~--~~CP~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHA--FHRKCLIKWLEVR--KVCPLCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEE--EEHHHHHHHHHHC--SBCTTTCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCE--ecHHHHHHHHHcC--CcCCCcCcccc
Confidence 34568999998888776543 79998 5544444433332 28999998874
No 47
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=95.01 E-value=0.012 Score=33.36 Aligned_cols=46 Identities=20% Similarity=0.481 Sum_probs=29.9
Q ss_pred ecCCCccccccc---cccccccCccceecHHHHHHHhcCCCceecccCCCccc
Q psy8140 42 LICPLGKMRMAF---PTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGH 91 (108)
Q Consensus 42 L~CPlS~~ri~~---P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~ 91 (108)
..|||-+..+.. +++-..|.|. |-..=+.++.... ..||+|.+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~--fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHL--LHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCE--EETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCc--ccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 568888777754 4566779998 4433333332222 78999998764
No 48
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.98 E-value=0.012 Score=34.62 Aligned_cols=48 Identities=19% Similarity=0.375 Sum_probs=34.8
Q ss_pred eeecCCCccccccccc------cccccCccceecHHHHHHHhcCCCceecccCCCccc
Q psy8140 40 SSLICPLGKMRMAFPT------KASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGH 91 (108)
Q Consensus 40 vsL~CPlS~~ri~~P~------Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~ 91 (108)
-.+.|||=+..+..|. ....|.|. |-..=+..+... ...||+|.+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~--fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHV--FCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCE--EEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCCh--hcHHHHHHHHHc--CCCCCCCCCccC
Confidence 4578999999998884 45689998 555555444333 348999999875
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=94.63 E-value=0.053 Score=33.96 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=35.5
Q ss_pred eecCCCcccccccc-ccccc--cCccceecHHHHHHHhcCCCceecccCCCcccCCCee
Q psy8140 41 SLICPLGKMRMAFP-TKAST--CAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLC 96 (108)
Q Consensus 41 sL~CPlS~~ri~~P-~Rg~~--C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~ 96 (108)
.+.|||=...+..+ .+... |.|. |=..=+..+... ....||+|.+.+...++.
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~--fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQ--ICRFCWHRIRTD-ENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCC--CCHHHHHHHTTS-SCSBCTTTCCBCSSCSSC
T ss_pred CCcCCccCccCccccccccccCCCCC--cCHHHHHHHHhc-CCCCCCCCCCccCCCchh
Confidence 46799988877643 33333 9999 444444444332 568999999998876654
No 50
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.45 E-value=0.028 Score=34.97 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=24.2
Q ss_pred cccCccceecHHHHHHHhcCCCceecccCCCcccCCCe
Q psy8140 58 STCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILL 95 (108)
Q Consensus 58 ~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL 95 (108)
..|.|. |-..=+.+...++ -.||+|.+.+.+.++
T Consensus 46 ~~C~H~--FH~~Ci~~Wl~~~--~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 46 GECNHS--FHNCCMSLWVKQN--NRCPLCQQDWVVQRI 79 (81)
T ss_dssp ETTSCE--EEHHHHHHHTTTC--CBCTTTCCBCCEEEE
T ss_pred CCCCCc--cChHHHHHHHHhC--CCCCCcCCCcchhhc
Confidence 359998 8877665554443 389999999876654
No 51
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=94.17 E-value=0.046 Score=32.37 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=31.4
Q ss_pred eecCCCcccccc--ccccccccCccceecHHHHHHHhcCCCceecccCCCcccC
Q psy8140 41 SLICPLGKMRMA--FPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHL 92 (108)
Q Consensus 41 sL~CPlS~~ri~--~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~ 92 (108)
...|||=+..+. .+++...|.|. |-..=+.++.... ..||+|.+.+..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~--fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHL--FHQVCVDQWLITN--KKCPICRVDIEA 63 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCE--EEHHHHHHHHHHC--SBCTTTCSBSCS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCH--HHHHHHHHHHHcC--CCCcCcCccccC
Confidence 467888877765 34555679998 5554444443332 359999988753
No 52
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.75 E-value=0.021 Score=34.55 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=32.1
Q ss_pred eecCCCcccccccc--ccccccCccceec-HHHHHHHhcCCCceecccCCCcccCC
Q psy8140 41 SLICPLGKMRMAFP--TKASTCAHLQCFD-GATFIKMNELKPKWNCPVCDKVGHLI 93 (108)
Q Consensus 41 sL~CPlS~~ri~~P--~Rg~~C~H~qCFD-l~~fl~~~~~~~~W~CPiC~~~~~~~ 93 (108)
...|||=+..+..| ++...|.|.-|.+ +..|+.. ...||+|.+.+...
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-----~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-----NRTCPICRADSGPS 73 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-----CSSCTTTCCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-----CCcCcCcCCcCCCC
Confidence 35688888887776 4556799984444 3344432 24799999988653
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.73 E-value=0.027 Score=32.70 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=33.5
Q ss_pred eecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCC
Q psy8140 41 SLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLIL 94 (108)
Q Consensus 41 sL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~d 94 (108)
.+.|||=+..+..|+. ..|.|.-|.+- -.....+||+|.+.+...+
T Consensus 6 ~~~C~IC~~~~~~p~~-l~CgH~fC~~C-------i~~~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKL-LPCLHTLCSGC-------LEASGMQCPICQAPWPLGA 51 (56)
T ss_dssp CSSCSSSCSSCBCCSC-STTSCCSBTTT-------CSSSSSSCSSCCSSSSCCS
T ss_pred CCCceEeCCccCCeEE-cCCCCcccHHH-------HccCCCCCCcCCcEeecCC
Confidence 4779999999999966 46999855332 1124568999999887654
No 54
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.82 E-value=0.023 Score=33.81 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=36.1
Q ss_pred eeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCC
Q psy8140 40 SSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLIL 94 (108)
Q Consensus 40 vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~d 94 (108)
-.+.|||=+..+.. ....|.|. |-..=+..+.. ....||+|.+.+...+
T Consensus 14 ~~~~C~IC~~~~~~--~~~~CgH~--fc~~Ci~~~~~--~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCICMDGRAD--LILPCAHS--FCQKCIDKWSD--RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCSSSCCSCCS--EEETTTEE--ECHHHHHHSSC--CCSSCHHHHHCTTCCC
T ss_pred CCCCCeeCCcCccC--cccCCCCc--ccHHHHHHHHH--CcCcCCCcCCcccCCC
Confidence 35789999888877 56789999 66655554433 4678999998887544
No 55
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=91.99 E-value=0.11 Score=32.74 Aligned_cols=48 Identities=19% Similarity=0.325 Sum_probs=30.8
Q ss_pred eecCCCccccccc--cccccccCccceecHHHHHHHhcCCCceecccCCCcccC
Q psy8140 41 SLICPLGKMRMAF--PTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHL 92 (108)
Q Consensus 41 sL~CPlS~~ri~~--P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~ 92 (108)
...|||=+..+.. +++...|.|. |-..=+..+... .-.||+|.+.+..
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~--Fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHY--FHKPCVSIWLQK--SGTCPVCRCMFPP 89 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEE--EEHHHHHHHHTT--TCBCTTTCCBSSC
T ss_pred CCCCcccChhhcCCCcEEecCCCCh--HHHHHHHHHHHc--CCcCcCcCccCCC
Confidence 4568888766655 2333459998 655544444333 2489999998764
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=91.95 E-value=0.079 Score=34.53 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=35.9
Q ss_pred eecCCCccccccccc------cccccCccceec-HHHHHHHhcCCCceecccCCCcccCCCee
Q psy8140 41 SLICPLGKMRMAFPT------KASTCAHLQCFD-GATFIKMNELKPKWNCPVCDKVGHLILLC 96 (108)
Q Consensus 41 sL~CPlS~~ri~~P~------Rg~~C~H~qCFD-l~~fl~~~~~~~~W~CPiC~~~~~~~dL~ 96 (108)
.+.||+=+..++.|+ ....|.|.-|++ +..+++ . ...||+|.+.+..+++.
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~--~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---N--ANTCPTCRKKINHKRYH 129 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH---H--CSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH---c--CCCCCCCCCcCChhcce
Confidence 467899888888773 455899995554 233433 2 24899999999887764
No 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.29 E-value=0.1 Score=31.79 Aligned_cols=43 Identities=26% Similarity=0.439 Sum_probs=32.8
Q ss_pred eecCCCccccccccccccccCcc-ceecHHHHHHHhcCCCceecccCCCcccC
Q psy8140 41 SLICPLGKMRMAFPTKASTCAHL-QCFDGATFIKMNELKPKWNCPVCDKVGHL 92 (108)
Q Consensus 41 sL~CPlS~~ri~~P~Rg~~C~H~-qCFDl~~fl~~~~~~~~W~CPiC~~~~~~ 92 (108)
.+.|||=+...+.|+. ..|.|. -|.+=.. ...+||+|.+.+..
T Consensus 25 ~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVF-VPCGHLVTCKQCAE--------AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCC-SSSCCCCBCHHHHH--------HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEE-ecCCCHHHHHHHhh--------CCCCCccCCceecC
Confidence 4679999999999987 479998 5655432 23789999998853
No 58
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=91.16 E-value=0.12 Score=34.72 Aligned_cols=45 Identities=22% Similarity=0.489 Sum_probs=33.8
Q ss_pred CCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCccc
Q psy8140 44 CPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGH 91 (108)
Q Consensus 44 CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~ 91 (108)
||.-..+|.+=+|-.-|+|.-|||=..-. .+ ++.-.||.|+.++.
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~--~~-~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILH--EK-KGDKMCPGCSDPVQ 48 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHH--HH-TTCCBCTTTCCBCS
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHH--Hh-ccCCCCcCcCCeee
Confidence 67777788888999999999787765432 22 23468999999884
No 59
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=90.50 E-value=0.21 Score=32.17 Aligned_cols=48 Identities=19% Similarity=0.460 Sum_probs=32.2
Q ss_pred ecCCCccccccccc-----------------cccccCccceecHHHHHHH---hcCCCceecccCCCccc
Q psy8140 42 LICPLGKMRMAFPT-----------------KASTCAHLQCFDGATFIKM---NELKPKWNCPVCDKVGH 91 (108)
Q Consensus 42 L~CPlS~~ri~~P~-----------------Rg~~C~H~qCFDl~~fl~~---~~~~~~W~CPiC~~~~~ 91 (108)
..|||=+..+..|. +-..|.|. |-..=+..+ ......-.||+|.+.+.
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~--Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA--FHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE--ECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCc--ccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 36888888887654 24679998 664444433 33245679999998774
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=90.37 E-value=0.14 Score=30.38 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=31.4
Q ss_pred eecCCCcccccccccc-ccccCcc-ceecHHHHHHHhcCCCceecccCCCccc
Q psy8140 41 SLICPLGKMRMAFPTK-ASTCAHL-QCFDGATFIKMNELKPKWNCPVCDKVGH 91 (108)
Q Consensus 41 sL~CPlS~~ri~~P~R-g~~C~H~-qCFDl~~fl~~~~~~~~W~CPiC~~~~~ 91 (108)
.-.|++-+.+.+.++- ...|.|+ -|++=..-+ ..+ .++||+|.+++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~--~~~--~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRL--KKA--GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHH--HHT--TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHH--HHh--CCcCCCcCchhh
Confidence 3468888887776652 2389998 466555433 222 389999999884
No 61
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=90.04 E-value=0.07 Score=32.56 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=32.2
Q ss_pred eecCCCccccccccccccccCcc-ceecHHHHHHHhcCCCceecccCCCccc
Q psy8140 41 SLICPLGKMRMAFPTKASTCAHL-QCFDGATFIKMNELKPKWNCPVCDKVGH 91 (108)
Q Consensus 41 sL~CPlS~~ri~~P~Rg~~C~H~-qCFDl~~fl~~~~~~~~W~CPiC~~~~~ 91 (108)
.+.|||=+.....|+.- .|.|. -|++=.. ....||+|.+.+.
T Consensus 24 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~--------~~~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFV-PCGHLVTCKQCAE--------AVDKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCCEEEE-TTCCBCCCHHHHT--------TCSBCTTTCCBCS
T ss_pred CCCCCCCCCCCCCEEEc-CCCChhHHHHhhh--------cCccCCCcCcCcc
Confidence 36799999999998865 79998 6665432 1289999999875
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=89.14 E-value=0.21 Score=29.68 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=31.0
Q ss_pred ecCCCccccccccccc-cccCcc-ceecHHHHHHHhcCCCceecccCCCccc
Q psy8140 42 LICPLGKMRMAFPTKA-STCAHL-QCFDGATFIKMNELKPKWNCPVCDKVGH 91 (108)
Q Consensus 42 L~CPlS~~ri~~P~Rg-~~C~H~-qCFDl~~fl~~~~~~~~W~CPiC~~~~~ 91 (108)
..|++=+.+.+.++-- ..|.|. -|++=..-+ .. ..+.||+|.+.+.
T Consensus 9 ~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~--~~--~~~~CPiCR~~i~ 56 (64)
T 2vje_A 9 EPCVICQGRPKNGCIVHGKTGHLMACFTCAKKL--KK--RNKPCPVCRQPIQ 56 (64)
T ss_dssp SCCTTTSSSCSCEEEEETTEEEEEECHHHHHHH--HH--TTCCCTTTCCCCC
T ss_pred CCCCcCCCCCCCEEEECCCCCChhhHHHHHHHH--HH--cCCcCCCcCcchh
Confidence 3588888887777642 379998 455544322 22 3478999999884
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.69 E-value=0.12 Score=32.58 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=37.9
Q ss_pred eecCCCcccccccccccc--ccCccceec-HHHHHHHhc--C-CCceeccc--CCCc--ccCCCe
Q psy8140 41 SLICPLGKMRMAFPTKAS--TCAHLQCFD-GATFIKMNE--L-KPKWNCPV--CDKV--GHLILL 95 (108)
Q Consensus 41 sL~CPlS~~ri~~P~Rg~--~C~H~qCFD-l~~fl~~~~--~-~~~W~CPi--C~~~--~~~~dL 95 (108)
.+.|||=+..+..|.--. .|.|.-|.+ +..|++..- . ....+||. |... +..+++
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 467999998888776543 699996654 456666432 2 24589999 9998 665444
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=86.55 E-value=0.5 Score=31.09 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=32.9
Q ss_pred cCCCcccccccc-----------------ccccccCccceecHHHHHHHhcCCCceecccCCCcccCC
Q psy8140 43 ICPLGKMRMAFP-----------------TKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLI 93 (108)
Q Consensus 43 ~CPlS~~ri~~P-----------------~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~ 93 (108)
.|+|=+..+..| ++-..|.|. |...=+.....+ +-.||+|.+...+.
T Consensus 39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~--FH~~Ci~~Wl~~--~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 39 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA--FHFHCISRWLKT--RQVCPLDNREWEFQ 102 (106)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE--EEHHHHHHHHTT--CSBCSSSCSBCCEE
T ss_pred CCccCChhHhCcCchhhccccccCCccceEeecccCcE--ECHHHHHHHHHc--CCcCcCCCCcceee
Confidence 477777766655 344679998 888776665444 45799999987543
No 65
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=85.86 E-value=0.057 Score=32.74 Aligned_cols=19 Identities=16% Similarity=0.517 Sum_probs=13.3
Q ss_pred HHHhcCCCceecccCCCcc
Q psy8140 72 IKMNELKPKWNCPVCDKVG 90 (108)
Q Consensus 72 l~~~~~~~~W~CPiC~~~~ 90 (108)
.++....++|+||+|+..-
T Consensus 25 ~~~~~~~~~W~C~~C~~~N 43 (59)
T 2yrc_A 25 CQVDYRAKLWACNFCYQRN 43 (59)
T ss_dssp SEEEGGGTEEECSSSCCEE
T ss_pred eEEECCCCEEEcccCCCcC
Confidence 3334456799999999743
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=84.35 E-value=0.42 Score=29.60 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=30.5
Q ss_pred ecCCCccccccccccccccCcc-ceecHHHHHHHhcCCCceecccCCCccc
Q psy8140 42 LICPLGKMRMAFPTKASTCAHL-QCFDGATFIKMNELKPKWNCPVCDKVGH 91 (108)
Q Consensus 42 L~CPlS~~ri~~P~Rg~~C~H~-qCFDl~~fl~~~~~~~~W~CPiC~~~~~ 91 (108)
..||+=+.....|+-. .|.|. -|++=.. ..|.||+|.+.+.
T Consensus 19 ~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~--------~~~~CP~Cr~~i~ 60 (79)
T 2yho_A 19 MLCMVCCEEEINSTFC-PCGHTVCCESCAA--------QLQSCPVCRSRVE 60 (79)
T ss_dssp TBCTTTSSSBCCEEEE-TTCBCCBCHHHHT--------TCSBCTTTCCBCC
T ss_pred CEeEEeCcccCcEEEE-CCCCHHHHHHHHH--------hcCcCCCCCchhh
Confidence 4688888888887764 79998 5654332 2369999999875
No 67
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=84.18 E-value=0.31 Score=43.55 Aligned_cols=59 Identities=14% Similarity=-0.000 Sum_probs=45.8
Q ss_pred eeeeeecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCeeehh
Q psy8140 37 ELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILLCMAM 99 (108)
Q Consensus 37 ~~~vsL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL~iD~ 99 (108)
...=.+.||||+..|+-||.-..=++ .||..++...-...+ .||+-+++++.++|+-+.
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~--TydR~~I~~wl~~~~--tdP~Tr~~L~~~~liPN~ 945 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKM--NIDRSTIKAHLLSDS--TDPFNRMPLKLEDVTPNE 945 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCC--EEEHHHHHHHHTTCC--BCTTTCCBCCGGGCEECH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCE--EECHHHHHHHHhcCC--CCCCCCCCCCcccccccH
Confidence 34456899999999999998533233 599999988765533 799999999988887654
No 68
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=84.16 E-value=0.29 Score=28.24 Aligned_cols=13 Identities=46% Similarity=1.204 Sum_probs=10.1
Q ss_pred CCCceecccCCCc
Q psy8140 77 LKPKWNCPVCDKV 89 (108)
Q Consensus 77 ~~~~W~CPiC~~~ 89 (108)
....|.||+|+..
T Consensus 27 lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 27 LPDDWCCPVCGVS 39 (46)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 3456999999975
No 69
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=83.24 E-value=0.53 Score=37.95 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=35.5
Q ss_pred eecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCCe
Q psy8140 41 SLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLILL 95 (108)
Q Consensus 41 sL~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~dL 95 (108)
...|||=...+..|+. ..|.|.-|.+- ...... ...-.||+|.+.+...++
T Consensus 332 ~~~C~ICle~~~~pv~-lpCGH~FC~~C--i~~wl~-~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKDVKI-EPCGHLMCTSC--LTSWQE-SEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCCEEE-ETTCCEECHHH--HHHHHH-HTCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCCeEE-eCCCChhhHHH--HHHHHh-cCCCCCCCCCCccCCcee
Confidence 3789999999999876 58999955432 222222 134589999999876544
No 70
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=82.62 E-value=0.15 Score=33.46 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.6
Q ss_pred ceecccCCCcccCCCeee
Q psy8140 80 KWNCPVCDKVGHLILLCM 97 (108)
Q Consensus 80 ~W~CPiC~~~~~~~dL~i 97 (108)
-.+||+|++++.+++|+-
T Consensus 8 ~~~~PlCG~~L~W~eLIe 25 (95)
T 2k5c_A 8 MAKCPICGSPLKWEELIE 25 (95)
T ss_dssp CEECSSSCCEECHHHHHH
T ss_pred cccCCcCCCccCHHHHHH
Confidence 479999999999988864
No 71
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.31 E-value=1.2 Score=26.65 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=29.3
Q ss_pred eecCCCccccccccccccccCcc-ceecHHHHHHHhcCCCceecccCCCccc
Q psy8140 41 SLICPLGKMRMAFPTKASTCAHL-QCFDGATFIKMNELKPKWNCPVCDKVGH 91 (108)
Q Consensus 41 sL~CPlS~~ri~~P~Rg~~C~H~-qCFDl~~fl~~~~~~~~W~CPiC~~~~~ 91 (108)
...|+|=+.....|+- ..|.|+ -|.+=.. ..++||+|.+.+.
T Consensus 15 ~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~--------~~~~CP~CR~~i~ 57 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVL-LPCRHTCLCDGCVK--------YFQQCPMCRQFVQ 57 (68)
T ss_dssp SSCCSSSSSSCCCCEE-TTTTBCCSCTTHHH--------HCSSCTTTCCCCC
T ss_pred CCCCCCcCcCCCCEEE-ECCCChhhhHHHHh--------cCCCCCCCCcchh
Confidence 3568888777665443 479998 5665544 1489999999875
No 72
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=78.78 E-value=0.58 Score=27.80 Aligned_cols=12 Identities=33% Similarity=1.074 Sum_probs=10.0
Q ss_pred CCceecccCCCc
Q psy8140 78 KPKWNCPVCDKV 89 (108)
Q Consensus 78 ~~~W~CPiC~~~ 89 (108)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 457999999975
No 73
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=78.78 E-value=0.59 Score=27.45 Aligned_cols=13 Identities=38% Similarity=1.165 Sum_probs=10.4
Q ss_pred CCCceecccCCCc
Q psy8140 77 LKPKWNCPVCDKV 89 (108)
Q Consensus 77 ~~~~W~CPiC~~~ 89 (108)
....|.||+|+..
T Consensus 32 lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 32 LPDDWVCPLCGAP 44 (52)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCCCCCCC
Confidence 3467999999975
No 74
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=78.58 E-value=0.6 Score=27.39 Aligned_cols=12 Identities=42% Similarity=1.270 Sum_probs=9.9
Q ss_pred CCceecccCCCc
Q psy8140 78 KPKWNCPVCDKV 89 (108)
Q Consensus 78 ~~~W~CPiC~~~ 89 (108)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 34 PDDWACPVCGAS 45 (52)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCcCCCCCCc
Confidence 457999999975
No 75
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=78.53 E-value=0.58 Score=27.76 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=9.9
Q ss_pred CCceecccCCCc
Q psy8140 78 KPKWNCPVCDKV 89 (108)
Q Consensus 78 ~~~W~CPiC~~~ 89 (108)
...|.||+|+..
T Consensus 34 P~dw~CP~Cga~ 45 (55)
T 2v3b_B 34 PADWVCPDCGVG 45 (55)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 457999999975
No 76
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.97 E-value=1.3 Score=27.67 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=22.2
Q ss_pred cccccccc---ccCccceecHHHHHHHhcCCCceecccCCCcccCCC
Q psy8140 51 MAFPTKAS---TCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLIL 94 (108)
Q Consensus 51 i~~P~Rg~---~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~d 94 (108)
+..|.+=+ +-.|..|. ..||... +...||+|...+.++.
T Consensus 31 l~~pC~C~Gs~h~fH~~Cl--~~Wl~~~---~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 31 LITPCHCTGSLHFVHQACL--QQWIKSS---DTRCCELCKYEFIMET 72 (80)
T ss_dssp EECSSSCCSSSCCEETTHH--HHHHHHH---CCSBCSSSCCBCCCCC
T ss_pred eEeccccCCcCCeeCHHHH--HHHHhhC---CCCCCCCCCCeeecCc
Confidence 44565432 23344443 3455443 4579999999887643
No 77
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=76.88 E-value=0.47 Score=37.39 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=32.8
Q ss_pred eecCCCccccccccccccccCcc-ceecHHHHHHHhcCCCceecccCCCccc
Q psy8140 41 SLICPLGKMRMAFPTKASTCAHL-QCFDGATFIKMNELKPKWNCPVCDKVGH 91 (108)
Q Consensus 41 sL~CPlS~~ri~~P~Rg~~C~H~-qCFDl~~fl~~~~~~~~W~CPiC~~~~~ 91 (108)
.+.|||=+.....|+.- .|.|. -|.+-.. ....||+|.+.+.
T Consensus 295 ~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~--------~~~~CP~CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFI-PCGHLVVCQECAP--------SLRKCPICRGIIK 337 (345)
T ss_dssp TCBCTTTSSSBCCEEEE-TTCCEEECTTTGG--------GCSBCTTTCCBCC
T ss_pred CCCCCccCCcCCceEEc-CCCChhHhHHHHh--------cCCcCCCCCCCcc
Confidence 47899999999999886 89998 5554332 1279999999875
No 78
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=76.32 E-value=0.74 Score=28.61 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=9.8
Q ss_pred CCceecccCCCc
Q psy8140 78 KPKWNCPVCDKV 89 (108)
Q Consensus 78 ~~~W~CPiC~~~ 89 (108)
...|.||+|+..
T Consensus 38 Pddw~CP~Cga~ 49 (70)
T 1dx8_A 38 SDSFMCPACRSP 49 (70)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 457999999974
No 79
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=75.68 E-value=0.77 Score=29.49 Aligned_cols=12 Identities=33% Similarity=1.160 Sum_probs=9.8
Q ss_pred CCceecccCCCc
Q psy8140 78 KPKWNCPVCDKV 89 (108)
Q Consensus 78 ~~~W~CPiC~~~ 89 (108)
...|.||+|+..
T Consensus 58 PddW~CPvCga~ 69 (81)
T 2kn9_A 58 PDDWSCPDCGAA 69 (81)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 457999999974
No 80
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=74.90 E-value=0.89 Score=33.16 Aligned_cols=21 Identities=24% Similarity=0.662 Sum_probs=14.8
Q ss_pred ccCccceecHHHHHHHhcCCCceecccCCCcc
Q psy8140 59 TCAHLQCFDGATFIKMNELKPKWNCPVCDKVG 90 (108)
Q Consensus 59 ~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~ 90 (108)
.|.|. +|- ...|.||+|+.+-
T Consensus 176 ~CG~i--~~g---------~~p~~CP~C~~~k 196 (202)
T 1yuz_A 176 ICGYI--HKG---------EDFEKCPICFRPK 196 (202)
T ss_dssp SSCCE--EES---------SCCSBCTTTCCBG
T ss_pred CCCCE--EcC---------cCCCCCCCCCCCh
Confidence 57777 662 2349999999764
No 81
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=73.77 E-value=1 Score=28.72 Aligned_cols=11 Identities=36% Similarity=1.310 Sum_probs=9.1
Q ss_pred CCCceecccCC
Q psy8140 77 LKPKWNCPVCD 87 (108)
Q Consensus 77 ~~~~W~CPiC~ 87 (108)
-..+|.||||.
T Consensus 14 ~~~tWVCpICs 24 (76)
T 2j9u_B 14 VVSTWVCPICM 24 (76)
T ss_dssp -CEEEECTTTC
T ss_pred cccceECcccc
Confidence 36789999998
No 82
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=71.49 E-value=1.1 Score=29.02 Aligned_cols=13 Identities=31% Similarity=1.071 Sum_probs=10.2
Q ss_pred CCCceecccCCCc
Q psy8140 77 LKPKWNCPVCDKV 89 (108)
Q Consensus 77 ~~~~W~CPiC~~~ 89 (108)
....|.||+|+..
T Consensus 65 lPddW~CPvCga~ 77 (87)
T 1s24_A 65 IPDDWCCPDCGAT 77 (87)
T ss_dssp CCTTCCCSSSCCC
T ss_pred CCCCCCCCCCCCC
Confidence 3457999999974
No 83
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=71.32 E-value=1.6 Score=22.61 Aligned_cols=13 Identities=23% Similarity=0.726 Sum_probs=10.6
Q ss_pred CceecccCCCccc
Q psy8140 79 PKWNCPVCDKVGH 91 (108)
Q Consensus 79 ~~W~CPiC~~~~~ 91 (108)
+++.||+|....+
T Consensus 2 ~k~~CpvCk~q~P 14 (28)
T 2jvx_A 2 SDFCCPKCQYQAP 14 (28)
T ss_dssp CCEECTTSSCEES
T ss_pred CcccCccccccCc
Confidence 5789999998664
No 84
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.42 E-value=7.6 Score=23.93 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=22.1
Q ss_pred ccCccceecHHHHHHHhcCCCceecccCCCcccC
Q psy8140 59 TCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHL 92 (108)
Q Consensus 59 ~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~ 92 (108)
.|.|. |-..=+-..-+....-.||.|++....
T Consensus 33 ~C~h~--fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 33 TCGIR--MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCCE--ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCch--hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 67776 776666555444444789999988754
No 85
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=70.37 E-value=1.7 Score=27.07 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=13.9
Q ss_pred hcCCCceecccCCCcccC
Q psy8140 75 NELKPKWNCPVCDKVGHL 92 (108)
Q Consensus 75 ~~~~~~W~CPiC~~~~~~ 92 (108)
....+.-.||+|++++.+
T Consensus 4 m~~~~~~~CP~Cgkp~~W 21 (68)
T 1lv3_A 4 MSETITVNCPTCGKTVVW 21 (68)
T ss_dssp CCCCCEEECTTTCCEEEC
T ss_pred CCCCCcCcCCCCCCcccc
Confidence 344577899999999864
No 86
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=69.80 E-value=1.9 Score=19.49 Aligned_cols=13 Identities=15% Similarity=0.726 Sum_probs=10.5
Q ss_pred CceecccCCCccc
Q psy8140 79 PKWNCPVCDKVGH 91 (108)
Q Consensus 79 ~~W~CPiC~~~~~ 91 (108)
..+.|+.|++.+.
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvh_A 2 KPFSCSLCPQRSR 14 (27)
T ss_dssp CCEECSSSSCEES
T ss_pred cCccCCCcChhhC
Confidence 3589999998765
No 87
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=66.71 E-value=2.8 Score=18.73 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=10.2
Q ss_pred ceecccCCCcccC
Q psy8140 80 KWNCPVCDKVGHL 92 (108)
Q Consensus 80 ~W~CPiC~~~~~~ 92 (108)
.++|+.|++.+..
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 4789999988753
No 88
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=66.71 E-value=1.6 Score=28.28 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=10.9
Q ss_pred ceecccCCCcccC
Q psy8140 80 KWNCPVCDKVGHL 92 (108)
Q Consensus 80 ~W~CPiC~~~~~~ 92 (108)
.-.||+|++.++.
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 5679999998874
No 89
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=65.43 E-value=2.3 Score=19.10 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=9.7
Q ss_pred ceecccCCCccc
Q psy8140 80 KWNCPVCDKVGH 91 (108)
Q Consensus 80 ~W~CPiC~~~~~ 91 (108)
.++|++|++.+.
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 478999998764
No 90
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=65.03 E-value=2.6 Score=19.01 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=9.8
Q ss_pred ceecccCCCccc
Q psy8140 80 KWNCPVCDKVGH 91 (108)
Q Consensus 80 ~W~CPiC~~~~~ 91 (108)
.+.|++|++.+.
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 1ard_A 2 SFVCEVCTRAFA 13 (29)
T ss_dssp CCBCTTTCCBCS
T ss_pred CeECCCCCcccC
Confidence 478999998875
No 91
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=64.41 E-value=2.6 Score=20.49 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 9 ~k~~~C~~C~k~f~ 22 (37)
T 1p7a_A 9 IKPFQCPDCDRSFS 22 (37)
T ss_dssp SSSBCCTTTCCCBS
T ss_pred CCCccCCCCCcccC
Confidence 35699999999875
No 92
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=64.25 E-value=2.7 Score=18.97 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=10.0
Q ss_pred ceecccCCCccc
Q psy8140 80 KWNCPVCDKVGH 91 (108)
Q Consensus 80 ~W~CPiC~~~~~ 91 (108)
.++|++|++.+.
T Consensus 3 ~~~C~~C~k~f~ 14 (28)
T 2kvf_A 3 PYSCSVCGKRFS 14 (28)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCCCcccC
Confidence 589999998765
No 93
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=62.37 E-value=2.1 Score=26.64 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=16.3
Q ss_pred CCCceecccCCCcccCCCeee
Q psy8140 77 LKPKWNCPVCDKVGHLILLCM 97 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~~~dL~i 97 (108)
...+-+|| ||+.+.++.++|
T Consensus 18 ~~kT~~C~-CG~~~~~~k~ri 37 (71)
T 1gh9_A 18 GAKTRKCV-CGRTVNVKDRRI 37 (71)
T ss_dssp TCSEEEET-TTEEEECCSSSC
T ss_pred CCcEEECC-CCCeeeeceEEE
Confidence 35667899 999999988875
No 94
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.34 E-value=3.2 Score=19.96 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 7 ~~~~~C~~C~k~f~ 20 (36)
T 2elr_A 7 GKTHLCDMCGKKFK 20 (36)
T ss_dssp CSSCBCTTTCCBCS
T ss_pred CCCeecCcCCCCcC
Confidence 35689999999875
No 95
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=62.22 E-value=3.1 Score=18.76 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=10.2
Q ss_pred ceecccCCCcccC
Q psy8140 80 KWNCPVCDKVGHL 92 (108)
Q Consensus 80 ~W~CPiC~~~~~~ 92 (108)
.++|+.|++.+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 4789999998753
No 96
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=61.60 E-value=3.4 Score=19.61 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=11.2
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...+.|++|++.+.
T Consensus 5 ~k~~~C~~C~k~f~ 18 (35)
T 2elx_A 5 SSGYVCALCLKKFV 18 (35)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCcchhC
Confidence 34699999999765
No 97
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.99 E-value=3.4 Score=19.97 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2els_A 7 GKIFTCEYCNKVFK 20 (36)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCEECCCCCceeC
Confidence 45699999999775
No 98
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=60.63 E-value=3.2 Score=21.40 Aligned_cols=13 Identities=31% Similarity=0.815 Sum_probs=10.1
Q ss_pred ceecccCCCcccC
Q psy8140 80 KWNCPVCDKVGHL 92 (108)
Q Consensus 80 ~W~CPiC~~~~~~ 92 (108)
+-+||+|.+-.+-
T Consensus 6 ~vqcpvcqq~mpa 18 (29)
T 3vhs_A 6 QVQCPVCQQMMPA 18 (29)
T ss_dssp EEECTTTCCEEEG
T ss_pred eeeChHHHHhCcH
Confidence 5789999986653
No 99
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=59.94 E-value=1.9 Score=29.00 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=0.0
Q ss_pred cccCccceecHHHHHHHhcCCCceecccCCCcccCC
Q psy8140 58 STCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLI 93 (108)
Q Consensus 58 ~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~ 93 (108)
..|.|. |...=+...-.. +-.||+|.+...+.
T Consensus 82 ~~C~H~--FH~~CI~~Wl~~--~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 82 GVCNHA--FHFHCISRWLKT--RQVCPLDNREWEFQ 113 (117)
T ss_dssp ------------------------------------
T ss_pred CCcCce--EcHHHHHHHHHc--CCcCCCCCCeeeee
Confidence 479998 655544443222 35799999987554
No 100
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=64.15 E-value=1.9 Score=19.33 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=10.2
Q ss_pred ceecccCCCcccC
Q psy8140 80 KWNCPVCDKVGHL 92 (108)
Q Consensus 80 ~W~CPiC~~~~~~ 92 (108)
.+.|++|++.+..
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 4789999987753
No 101
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=59.73 E-value=3 Score=18.98 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=9.9
Q ss_pred ceecccCCCccc
Q psy8140 80 KWNCPVCDKVGH 91 (108)
Q Consensus 80 ~W~CPiC~~~~~ 91 (108)
.++|+.|++.+.
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvg_A 3 PYRCPLCRAGCP 14 (27)
T ss_dssp TEEETTTTEEES
T ss_pred CcCCCCCCcccC
Confidence 489999998764
No 102
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=59.70 E-value=1.1 Score=38.64 Aligned_cols=33 Identities=21% Similarity=0.724 Sum_probs=20.2
Q ss_pred cccccc--cCccceecHHHHHHHhcCCCceecccCCCcc
Q psy8140 54 PTKAST--CAHLQCFDGATFIKMNELKPKWNCPVCDKVG 90 (108)
Q Consensus 54 P~Rg~~--C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~ 90 (108)
|+|=+. |+-. +..|.++....++|+||+|+..-
T Consensus 53 pvRC~~~~Cray----iNPf~~~~~~~~~W~C~~C~~~N 87 (768)
T 1m2o_A 53 PVVCSGPHCKSI----LNPYCVIDPRNSSWSCPICNSRN 87 (768)
T ss_dssp CCBCCSTTTCCB----CCTTSCEETTTTEECCTTTCCCC
T ss_pred CCccCCCCCCeE----ECCceEEeCCCCEEEcccCCCCC
Confidence 555555 6542 23333344456799999999754
No 103
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=58.90 E-value=1.1 Score=38.66 Aligned_cols=33 Identities=18% Similarity=0.473 Sum_probs=20.1
Q ss_pred cccccc--cCccceecHHHHHHHhcCCCceecccCCCcc
Q psy8140 54 PTKAST--CAHLQCFDGATFIKMNELKPKWNCPVCDKVG 90 (108)
Q Consensus 54 P~Rg~~--C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~ 90 (108)
|+|=+. |+-. +..|.++....++|+||+|+..-
T Consensus 62 pvRC~~~~Cray----iNPf~~~~~~~~~W~C~~C~~~N 96 (769)
T 2nut_A 62 PVLCSRTTCRAV----LNPLCQVDYRAKLWACNFCYQRN 96 (769)
T ss_dssp CCBCSSTTCCCB----CCTTSEEETTTTEEECSSSCCEE
T ss_pred CCcCCCCCCCeE----ECCceEEeCCCCEEEccCCCCCC
Confidence 555555 6442 22333334457799999999754
No 104
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=58.59 E-value=3.7 Score=18.21 Aligned_cols=12 Identities=17% Similarity=0.625 Sum_probs=9.5
Q ss_pred eecccCCCcccC
Q psy8140 81 WNCPVCDKVGHL 92 (108)
Q Consensus 81 W~CPiC~~~~~~ 92 (108)
++|++|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 689999988753
No 105
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=58.41 E-value=4.2 Score=18.23 Aligned_cols=13 Identities=15% Similarity=0.544 Sum_probs=10.3
Q ss_pred CceecccCCCccc
Q psy8140 79 PKWNCPVCDKVGH 91 (108)
Q Consensus 79 ~~W~CPiC~~~~~ 91 (108)
..++|+.|++.+.
T Consensus 2 k~~~C~~C~~~f~ 14 (30)
T 2m0d_A 2 KPYQCDYCGRSFS 14 (30)
T ss_dssp CCEECTTTCCEES
T ss_pred cCccCCCCCcccC
Confidence 3589999998764
No 106
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.14 E-value=4.2 Score=19.50 Aligned_cols=14 Identities=21% Similarity=0.710 Sum_probs=11.2
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elt_A 7 GKPYKCPQCSYASA 20 (36)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCCCCCCCCcccC
Confidence 35699999998775
No 107
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=58.10 E-value=1.7 Score=25.36 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=16.8
Q ss_pred ccCccceecHHHHHHHhcCCCceecccCCCcc
Q psy8140 59 TCAHLQCFDGATFIKMNELKPKWNCPVCDKVG 90 (108)
Q Consensus 59 ~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~ 90 (108)
.|.+. |+.+. .+.-+.-+||+||-.+
T Consensus 8 rCg~~--fs~~e----l~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 8 KCWKT--FTDEQ----LKVLPGVRCPYCGYKI 33 (48)
T ss_dssp CTTTT--CCCCC----SCCCSSSCCTTTCCSC
T ss_pred ccCCC--ccHHH----HhhCCCcccCccCcEE
Confidence 45555 55544 3346888999998544
No 108
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=57.91 E-value=1 Score=38.92 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=22.5
Q ss_pred ccccccccCccceecHHHHHHHhcCCCceecccCCCc
Q psy8140 53 FPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKV 89 (108)
Q Consensus 53 ~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~ 89 (108)
.|+|=+.|+-. +..|.++....++|+||+|+..
T Consensus 97 ~pvRC~rCray----iNPf~~f~~~g~~w~Cn~C~~~ 129 (770)
T 3efo_B 97 GPVRCNRCKAY----MCPFMQFIEGGRRYQCGFCNCV 129 (770)
T ss_dssp CSCBCTTTCCB----SCTTCEEEGGGTEEECTTTCCE
T ss_pred CCCccCCCCCC----cCCceEEecCCCEEEecccccc
Confidence 46777777664 2344455556689999999964
No 109
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=57.47 E-value=4.1 Score=18.32 Aligned_cols=12 Identities=42% Similarity=0.811 Sum_probs=9.7
Q ss_pred ceecccCCCccc
Q psy8140 80 KWNCPVCDKVGH 91 (108)
Q Consensus 80 ~W~CPiC~~~~~ 91 (108)
.+.|+.|++.+.
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 1rik_A 2 KFACPECPKRFM 13 (29)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCchhC
Confidence 478999998765
No 110
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.25 E-value=4.4 Score=19.55 Aligned_cols=14 Identities=14% Similarity=0.655 Sum_probs=11.2
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elq_A 7 GKPFKCSLCEYATR 20 (36)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCccCCCCCchhC
Confidence 35699999998775
No 111
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=57.18 E-value=4.4 Score=19.32 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=11.2
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 5 ~k~~~C~~C~k~f~ 18 (35)
T 1srk_A 5 KRPFVCRICLSAFT 18 (35)
T ss_dssp CSCEECSSSCCEES
T ss_pred CcCeeCCCCCcccC
Confidence 34699999999775
No 112
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.70 E-value=4.7 Score=20.09 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2ytb_A 9 EKPYRCDQCGKAFS 22 (42)
T ss_dssp CCSBCCTTTTCCBS
T ss_pred CCCeeCCCccchhC
Confidence 45699999999875
No 113
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=56.52 E-value=3.6 Score=27.09 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=17.9
Q ss_pred ceecccCCCcccCCCeeehhhh
Q psy8140 80 KWNCPVCDKVGHLILLCMAMIE 101 (108)
Q Consensus 80 ~W~CPiC~~~~~~~dL~iD~~~ 101 (108)
.+.|+.|++.+....+.||-+.
T Consensus 35 ~~~C~yCg~~~~~~~~~vDHIi 56 (112)
T 2qgp_A 35 RGICHYCGEIFPPEELTMDHLV 56 (112)
T ss_dssp HTBCTTTCCBCCGGGEEEEESS
T ss_pred CCcCCCCCCcCCCCCcEEEEEe
Confidence 4689999999887788888553
No 114
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=56.09 E-value=4.3 Score=20.81 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=11.3
Q ss_pred ceecccCCCcccCC
Q psy8140 80 KWNCPVCDKVGHLI 93 (108)
Q Consensus 80 ~W~CPiC~~~~~~~ 93 (108)
..+||.|++.+.+-
T Consensus 3 ~~~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 3 NPNCARCGKIVYPT 16 (31)
T ss_dssp CCBCSSSCSBCCGG
T ss_pred CCcCCccCCEEecc
Confidence 46899999998754
No 115
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=55.52 E-value=1.1 Score=38.58 Aligned_cols=34 Identities=18% Similarity=0.467 Sum_probs=22.5
Q ss_pred ccccccccCccceecHHHHHHHhcCCCceecccCCCcc
Q psy8140 53 FPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVG 90 (108)
Q Consensus 53 ~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~ 90 (108)
.|+|=+.|+-. +..|.++....++|+||+|+..-
T Consensus 93 ~pvRC~rCray----iNPf~~f~~~g~~w~Cn~C~~~N 126 (766)
T 3eh2_A 93 GPLRCNRCKAY----MCPFMQFIEGGRRFQCCFCSCIN 126 (766)
T ss_dssp CCCBCTTTCCB----CCTTCEEEGGGTEEECTTTCCEE
T ss_pred CCCccCCCCCE----eCCceEEecCCCEEEeccccccC
Confidence 46777777664 23344444456799999999743
No 116
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.07 E-value=5 Score=19.46 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=11.9
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 7 ~k~~~C~~C~k~f~~ 21 (37)
T 2elp_A 7 GRAMKCPYCDFYFMK 21 (37)
T ss_dssp CCCEECSSSSCEECS
T ss_pred CCCeECCCCChhhcc
Confidence 346999999998764
No 117
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=54.21 E-value=5.3 Score=19.95 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 8 ~k~~~C~~C~k~f~ 21 (42)
T 2el5_A 8 ENPYECSECGKAFN 21 (42)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCccCCCcChhhC
Confidence 45699999999775
No 118
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=54.20 E-value=9.5 Score=20.19 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=11.9
Q ss_pred CCCceecccCCCccc
Q psy8140 77 LKPKWNCPVCDKVGH 91 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~ 91 (108)
....++|++|++.+.
T Consensus 26 ~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 26 DVRPYHCTYCNFSFK 40 (57)
T ss_dssp SCCCEECSSSSCEES
T ss_pred CCCCccCCCCCchhc
Confidence 356799999998764
No 119
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=54.07 E-value=1.4 Score=38.16 Aligned_cols=33 Identities=18% Similarity=0.543 Sum_probs=21.0
Q ss_pred cccccccCccceecHHHHHHHhcCCCceecccCCCcc
Q psy8140 54 PTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVG 90 (108)
Q Consensus 54 P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~ 90 (108)
|+|=+.|+-. +..|.++....++|+||+|+..-
T Consensus 112 pvRC~~Cray----iNPf~~~~~~g~~W~C~~C~~~N 144 (810)
T 1pcx_A 112 IVRCRRCRSY----MNPFVTFIEQGRRWRCNFCRLAN 144 (810)
T ss_dssp CCBCTTTCCB----CCTTCEEETTTTEEECTTTCCEE
T ss_pred CCccCCccCE----ecCceEEeCCCCEEEccCCCCcC
Confidence 6776667543 22333344456899999999753
No 120
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=53.97 E-value=9.3 Score=20.22 Aligned_cols=26 Identities=12% Similarity=0.522 Sum_probs=16.5
Q ss_pred ecHHHHHHH----hcCCCceecccCCCccc
Q psy8140 66 FDGATFIKM----NELKPKWNCPVCDKVGH 91 (108)
Q Consensus 66 FDl~~fl~~----~~~~~~W~CPiC~~~~~ 91 (108)
|...+.|.. ......++||+|++.+.
T Consensus 14 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 14 FRSNYYLNIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp CSCHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred hCChHHHHHHHHHcCCCCCcCCCCCcchhC
Confidence 544444433 23355699999998764
No 121
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=53.92 E-value=4.4 Score=21.58 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=9.6
Q ss_pred CCCceecccCCCcc
Q psy8140 77 LKPKWNCPVCDKVG 90 (108)
Q Consensus 77 ~~~~W~CPiC~~~~ 90 (108)
..+.|.|++|--.=
T Consensus 4 ~~g~W~C~~C~~~N 17 (33)
T 3gj3_B 4 GSGTWDCDTCLVQN 17 (33)
T ss_dssp --CCEECTTTCCEE
T ss_pred CCCceeCCcccCCC
Confidence 45789999997543
No 122
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.56 E-value=5.6 Score=19.82 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 8 ~k~~~C~~C~k~f~ 21 (41)
T 2ept_A 8 QRVYECQECGKSFR 21 (41)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCCcC
Confidence 35699999998775
No 123
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=52.51 E-value=5.4 Score=18.02 Aligned_cols=12 Identities=17% Similarity=0.725 Sum_probs=9.7
Q ss_pred ceecccCCCccc
Q psy8140 80 KWNCPVCDKVGH 91 (108)
Q Consensus 80 ~W~CPiC~~~~~ 91 (108)
.++|+.|++.+.
T Consensus 2 ~~~C~~C~k~f~ 13 (30)
T 1paa_A 2 AYACGLCNRAFT 13 (30)
T ss_dssp CSBCTTTCCBCS
T ss_pred CcCCcccCcccC
Confidence 368999998775
No 124
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.50 E-value=6.2 Score=19.73 Aligned_cols=15 Identities=13% Similarity=0.456 Sum_probs=11.7
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 9 ~k~~~C~~C~k~f~~ 23 (42)
T 2eos_A 9 EKPYPCEICGTRFRH 23 (42)
T ss_dssp SCCBCCSSSCCCBSS
T ss_pred CCCEECCCCCCccCC
Confidence 356999999998753
No 125
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.35 E-value=6.1 Score=20.21 Aligned_cols=14 Identities=29% Similarity=0.626 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2enf_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CcCeECCCCCcccC
Confidence 45699999999875
No 126
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.34 E-value=6.1 Score=18.98 Aligned_cols=14 Identities=14% Similarity=0.593 Sum_probs=11.1
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elv_A 7 GLLYDCHICERKFK 20 (36)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCccC
Confidence 34689999998765
No 127
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=52.03 E-value=5.9 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 9 ~~~~~C~~C~k~f~ 22 (42)
T 2epc_A 9 ETPYLCGQCGKSFT 22 (42)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCeECCCCCcccC
Confidence 35699999999775
No 128
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.94 E-value=5.3 Score=20.11 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...+.|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2en7_A 10 MKPYVCNECGKAFR 23 (44)
T ss_dssp SSSSCCTTTCCCCS
T ss_pred CcCeECCCCCCccC
Confidence 35699999999875
No 129
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.66 E-value=6.1 Score=20.13 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yts_A 10 EKPYICNECGKSFI 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCEECCCCChhhC
Confidence 45699999998765
No 130
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.36 E-value=4.8 Score=19.46 Aligned_cols=14 Identities=36% Similarity=0.871 Sum_probs=11.1
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...+.|++|++.+.
T Consensus 7 ~k~~~C~~C~k~f~ 20 (37)
T 2elo_A 7 GRSYSCPVCEKSFS 20 (37)
T ss_dssp CCCCEETTTTEECS
T ss_pred CCCcCCCCCCCccC
Confidence 34689999998775
No 131
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.09 E-value=6.8 Score=20.01 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eml_A 10 EKPYECSVCGKAFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCCCcCCccC
Confidence 45699999998765
No 132
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.07 E-value=6.6 Score=20.00 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2eov_A 10 EKPYKCSDCGKSFT 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CCCccCCccChhhC
Confidence 35699999999875
No 133
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=51.04 E-value=8.4 Score=19.68 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=11.9
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ely_A 10 EKPFKCVECGKGFSR 24 (46)
T ss_dssp CCSBCCSSSCCCBSS
T ss_pred CCCcccCccCcccCC
Confidence 356999999998754
No 134
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=51.02 E-value=6.1 Score=18.94 Aligned_cols=12 Identities=42% Similarity=0.811 Sum_probs=9.7
Q ss_pred ceecccCCCccc
Q psy8140 80 KWNCPVCDKVGH 91 (108)
Q Consensus 80 ~W~CPiC~~~~~ 91 (108)
.+.|++|++.+.
T Consensus 2 p~~C~~C~k~F~ 13 (33)
T 1rim_A 2 KFACPECPKRFM 13 (33)
T ss_dssp CCCCSSSCCCCS
T ss_pred cccCCCCCchhC
Confidence 378999999775
No 135
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=56.33 E-value=3.2 Score=18.81 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=9.8
Q ss_pred ceecccCCCccc
Q psy8140 80 KWNCPVCDKVGH 91 (108)
Q Consensus 80 ~W~CPiC~~~~~ 91 (108)
.+.|+.|++.+.
T Consensus 3 ~~~C~~C~k~f~ 14 (30)
T 2lvr_A 3 PYVCIHCQRQFA 14 (30)
Confidence 478999998764
No 136
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.87 E-value=6.2 Score=19.83 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2eof_A 10 EKPYECNECQKAFN 23 (44)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCeECCCCCcccC
Confidence 45699999998765
No 137
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=50.76 E-value=5.9 Score=20.19 Aligned_cols=10 Identities=30% Similarity=1.122 Sum_probs=8.4
Q ss_pred CCceecccCC
Q psy8140 78 KPKWNCPVCD 87 (108)
Q Consensus 78 ~~~W~CPiC~ 87 (108)
.+.|.||.|-
T Consensus 4 ~~~W~C~~CT 13 (31)
T 1nj3_A 4 SAMWACQHCT 13 (31)
T ss_dssp SCCEECSSSC
T ss_pred CccccCCccc
Confidence 4689999997
No 138
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.68 E-value=6.7 Score=20.09 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em6_A 10 EKCYKCDVCGKEFS 23 (46)
T ss_dssp CCCCBCSSSCCBCS
T ss_pred CCCeECCCCCcccC
Confidence 45699999999875
No 139
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.61 E-value=6.5 Score=20.09 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emg_A 10 ENPFICSECGKVFT 23 (46)
T ss_dssp CCSCBCTTTCCBCS
T ss_pred CCCEECCccCcccC
Confidence 35699999999875
No 140
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.42 E-value=6.8 Score=20.14 Aligned_cols=15 Identities=27% Similarity=0.704 Sum_probs=11.8
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eon_A 10 EKPYKCQVCGKAFRV 24 (46)
T ss_dssp CCSCBCSSSCCBCSS
T ss_pred CcccCCCCCCcccCc
Confidence 456999999998753
No 141
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.35 E-value=6.6 Score=19.99 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2yrj_A 10 EKPYRCGECGKAFA 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCccC
Confidence 45699999998775
No 142
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=50.32 E-value=1.8 Score=38.26 Aligned_cols=33 Identities=18% Similarity=0.543 Sum_probs=20.9
Q ss_pred cccccccCccceecHHHHHHHhcCCCceecccCCCcc
Q psy8140 54 PTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVG 90 (108)
Q Consensus 54 P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~ 90 (108)
|+|=+.|+-. +..|.++....++|+||+|+..-
T Consensus 228 pvRC~rCrAY----iNPf~~~~~~g~~W~CnfC~~~N 260 (926)
T 1m2v_B 228 IVRCRRCRSY----MNPFVTFIEQGRRWRCNFCRLAN 260 (926)
T ss_dssp CCBCSSSCCB----CCTTCEEETTTTEEECTTTCCEE
T ss_pred CCccCCccCE----ecCceEEeCCCCEEEccCCCCCC
Confidence 6776666543 22333344457899999999743
No 143
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=50.27 E-value=11 Score=21.11 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=17.1
Q ss_pred ecHHHHHHH----hcCCCceecccCCCccc
Q psy8140 66 FDGATFIKM----NELKPKWNCPVCDKVGH 91 (108)
Q Consensus 66 FDl~~fl~~----~~~~~~W~CPiC~~~~~ 91 (108)
|....-|.. ......++|++|++.+.
T Consensus 31 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 60 (73)
T 1f2i_G 31 FSRSDELTRHIRIHTGQKPFQCRICMRNFS 60 (73)
T ss_dssp ESSHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred cCCHHHHHHHHHhhCCCCCeECCCCCchhC
Confidence 655554443 23456699999998765
No 144
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.93 E-value=6.8 Score=19.95 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytf_A 10 EKPFECSECQKAFN 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCcCCCCCCcccC
Confidence 45699999998764
No 145
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.78 E-value=6.1 Score=20.20 Aligned_cols=15 Identities=27% Similarity=0.549 Sum_probs=11.7
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2yti_A 10 EKPYKCNECGKVFTQ 24 (46)
T ss_dssp CCTTCCSSSCCCCSS
T ss_pred CcCeECCCCCcccCC
Confidence 456899999998753
No 146
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.67 E-value=6.5 Score=19.60 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 9 ~k~~~C~~C~k~f~ 22 (42)
T 2en2_A 9 EKPYKCETCGARFV 22 (42)
T ss_dssp SCSEECTTTCCEES
T ss_pred CCCEeCCCcChhhC
Confidence 35699999999775
No 147
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.62 E-value=6.8 Score=19.95 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eow_A 10 EKPYKCNECGKAFR 23 (46)
T ss_dssp CCCEECTTSCCEES
T ss_pred CCCeeccccCChhc
Confidence 45699999999765
No 148
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=49.54 E-value=13 Score=21.68 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=21.4
Q ss_pred ccccccccc---cCccceecHHHHHHHhcCCCceecccCCCcccC
Q psy8140 51 MAFPTKAST---CAHLQCFDGATFIKMNELKPKWNCPVCDKVGHL 92 (108)
Q Consensus 51 i~~P~Rg~~---C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~ 92 (108)
+..|.+-+. -.|..| +..++.. ++.+.||+|+..+.+
T Consensus 20 l~~PC~C~gs~~~~H~~C--l~~W~~~---~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 20 RFRACGCTGELENVHRSC--LSTWLTI---SRNTACQICGVVYNT 59 (60)
T ss_dssp CCCSCCCSSGGGSCCHHH--HHHHHHH---HTCSBCTTTCCBCCC
T ss_pred eecCcCCCCchhhhHHHH--HHHHHHh---CCCCccCCCCCeeec
Confidence 346754322 445544 3445543 245899999988754
No 149
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.47 E-value=6.7 Score=19.97 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ep1_A 10 EKPYECSDCGKSFI 23 (46)
T ss_dssp CCSSCCSSSCCCCS
T ss_pred CCCcCCCCCCchhC
Confidence 45699999999875
No 150
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=54.55 E-value=3.6 Score=18.67 Aligned_cols=12 Identities=25% Similarity=0.550 Sum_probs=9.6
Q ss_pred ceecccCCCccc
Q psy8140 80 KWNCPVCDKVGH 91 (108)
Q Consensus 80 ~W~CPiC~~~~~ 91 (108)
.++|++|++.+.
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2lvt_A 2 PCQCVMCGKAFT 13 (29)
Confidence 368999998764
No 151
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.87 E-value=7.3 Score=19.32 Aligned_cols=14 Identities=14% Similarity=0.541 Sum_probs=11.2
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 8 ~k~~~C~~C~k~f~ 21 (42)
T 2yte_A 8 EKPYSCAECKETFS 21 (42)
T ss_dssp CCSCBCTTTCCBCS
T ss_pred CCCeECCCCCCccC
Confidence 35689999999775
No 152
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.86 E-value=7.4 Score=19.93 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yth_A 10 EKPFQCEECGKRFT 23 (46)
T ss_dssp SSSBCCSSSCCCBS
T ss_pred CcCCCCCCCCcccC
Confidence 35699999999875
No 153
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.73 E-value=7.1 Score=19.73 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=11.8
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (44)
T 2yu5_A 10 ENPFKCSKCDRVFTQ 24 (44)
T ss_dssp CCSEECSSSSCEESS
T ss_pred CCCeECCCCCchhCC
Confidence 356999999998754
No 154
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=48.69 E-value=7 Score=20.01 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emj_A 10 EKPFECAECGKSFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCEECCCCCcccC
Confidence 45699999998775
No 155
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.68 E-value=7.3 Score=19.89 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2em3_A 10 EKPYECKVCSKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCcccC
Confidence 45699999998775
No 156
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.59 E-value=7.3 Score=19.94 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2yto_A 10 EKPYKCSDCGKAFT 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCEECcccCCccC
Confidence 45699999999775
No 157
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=48.56 E-value=5.9 Score=28.00 Aligned_cols=13 Identities=31% Similarity=0.881 Sum_probs=10.3
Q ss_pred CCceecccCCCcc
Q psy8140 78 KPKWNCPVCDKVG 90 (108)
Q Consensus 78 ~~~W~CPiC~~~~ 90 (108)
...|.||+||-..
T Consensus 136 ~~~~~C~~CG~i~ 148 (170)
T 3pwf_A 136 KKVYICPICGYTA 148 (170)
T ss_dssp SCEEECTTTCCEE
T ss_pred CCeeEeCCCCCee
Confidence 4689999999654
No 158
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.48 E-value=7.1 Score=19.94 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=11.8
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2ytg_A 10 EKPFKCGECGKSYNQ 24 (46)
T ss_dssp CCSEECTTTCCEESS
T ss_pred CCCeECCCCCcccCC
Confidence 456999999987753
No 159
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.47 E-value=7.4 Score=19.86 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2emi_A 10 ERHYECSECGKAFI 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCCCCCCCCcccC
Confidence 45699999998775
No 160
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.36 E-value=7.4 Score=19.86 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ep3_A 10 EKPYRCAECGKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 45699999998765
No 161
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.30 E-value=7.2 Score=19.89 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emy_A 10 ENPYECHECGKAFS 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CcCcCCCCCCcccC
Confidence 35699999998775
No 162
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.25 E-value=7 Score=19.95 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ene_A 10 EKPYKCNECGKVFR 23 (46)
T ss_dssp SSSEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 45699999998765
No 163
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.17 E-value=7.2 Score=19.96 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2em5_A 10 TKSHQCHECGRGFT 23 (46)
T ss_dssp SCSEECSSSCCEES
T ss_pred CCCeECCcCCCccC
Confidence 45699999998764
No 164
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.11 E-value=7.5 Score=19.76 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2eop_A 10 EKPHECRECGKSFS 23 (46)
T ss_dssp CCSCBCTTTCCBCS
T ss_pred CCCeeCCCCCchhC
Confidence 45699999999875
No 165
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.06 E-value=13 Score=20.92 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=16.9
Q ss_pred ecHHHHHHH----hcCCCceecccCCCccc
Q psy8140 66 FDGATFIKM----NELKPKWNCPVCDKVGH 91 (108)
Q Consensus 66 FDl~~fl~~----~~~~~~W~CPiC~~~~~ 91 (108)
|.-..-|.. ......++|++|++.+.
T Consensus 24 f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 24 FSRSSILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp ESSHHHHHHHHHGGGCSCCEECSSSCCEES
T ss_pred cCCHHHHHHHHHhcCCCCCeECCCCCcccC
Confidence 554444443 23356799999998764
No 166
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.99 E-value=7.4 Score=19.64 Aligned_cols=14 Identities=21% Similarity=0.667 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 8 ~k~~~C~~C~k~f~ 21 (44)
T 2emx_A 8 EKPFGCSCCEKAFS 21 (44)
T ss_dssp CCCEECSSSSCEES
T ss_pred CcCccCCCCCcccC
Confidence 45699999998775
No 167
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.97 E-value=7.9 Score=19.80 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emf_A 10 GKHFECTECGKAFT 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCeECCCCCchhC
Confidence 45699999998765
No 168
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.88 E-value=6.2 Score=19.91 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=11.2
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2eoj_A 10 ENPYECCECGKVFS 23 (44)
T ss_dssp CCSCEETTTTEECS
T ss_pred CcCeeCCCCCCccC
Confidence 35699999998765
No 169
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.73 E-value=7.2 Score=19.91 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eq1_A 10 EKPYKCNECGKAFR 23 (46)
T ss_dssp SCCCCCTTTTCCCS
T ss_pred CCCeECCcCChhhC
Confidence 35699999999875
No 170
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.59 E-value=7.7 Score=19.84 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2ytp_A 10 ERHYECSECGKAFA 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCcCCcccC
Confidence 45699999998765
No 171
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.52 E-value=7.4 Score=19.71 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=11.8
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...+.|++|++.+..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (44)
T 2eou_A 10 KTTSECQECGKIFRH 24 (44)
T ss_dssp SCCCCCTTTCCCCSS
T ss_pred CcCeECCCCCcccCC
Confidence 356899999998753
No 172
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.51 E-value=7.8 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eme_A 10 EKPYVCDYCGKAFG 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECCCCChhhC
Confidence 45699999998775
No 173
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.24 E-value=7.7 Score=19.85 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2en9_A 10 KKLFKCNECKKTFT 23 (46)
T ss_dssp SCCCBCTTTCCBCS
T ss_pred CCCEECCccCcccC
Confidence 45699999999875
No 174
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.18 E-value=7.9 Score=19.73 Aligned_cols=14 Identities=21% Similarity=0.674 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...+.|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ep2_A 10 EKPYECSICGKSFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCcCCCCCCcccC
Confidence 45699999998765
No 175
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.94 E-value=6.3 Score=19.30 Aligned_cols=14 Identities=14% Similarity=0.378 Sum_probs=11.2
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|+.|++.+.
T Consensus 7 ~k~~~C~~C~k~f~ 20 (37)
T 2elm_A 7 GHLYYCSQCHYSSI 20 (37)
T ss_dssp SCEEECSSSSCEEE
T ss_pred CcCeECCCCCcccC
Confidence 35699999999764
No 176
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.87 E-value=8 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em7_A 10 EKPYKCEECGKGFI 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCccCCCccchhC
Confidence 45699999998765
No 177
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.78 E-value=6.2 Score=20.25 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eoz_A 10 EKPYSCNVCGKAFV 23 (46)
T ss_dssp CCSEEETTTTEEES
T ss_pred CCCeECcccChhhC
Confidence 45699999998765
No 178
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.75 E-value=5.8 Score=20.22 Aligned_cols=14 Identities=21% Similarity=0.562 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eq3_A 10 EKPYECNQCGKAFS 23 (46)
T ss_dssp CCSSEETTTTEECS
T ss_pred CCCeECCCCChhhC
Confidence 45699999998765
No 179
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.67 E-value=8.5 Score=19.59 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=11.8
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2epz_A 10 EKPFDCIDCGKAFSD 24 (46)
T ss_dssp CCSBCCTTTCCCBSS
T ss_pred CCCeECCCCCceeCC
Confidence 356999999998753
No 180
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=46.65 E-value=8.2 Score=19.61 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em9_A 10 EKPYNCKECGKSFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCccccccC
Confidence 45699999998765
No 181
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.60 E-value=7.9 Score=19.73 Aligned_cols=14 Identities=29% Similarity=0.626 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2ytk_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp SCSEECSSSCCEES
T ss_pred CCCEeCCcCCCccC
Confidence 45699999999775
No 182
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.52 E-value=8.2 Score=19.73 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em2_A 10 EKPFKCKECGKAFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCEECCcCCchhC
Confidence 45699999999775
No 183
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.52 E-value=7.7 Score=19.57 Aligned_cols=14 Identities=14% Similarity=0.667 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (44)
T 2emb_A 10 RKRYECSKCQATFN 23 (44)
T ss_dssp CSSEECTTTCCEES
T ss_pred CCCeECCCCCCccC
Confidence 35699999998775
No 184
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.47 E-value=8.2 Score=19.59 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=11.7
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2epw_A 10 EKPCKCTECGKAFCW 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCeeCCCCCCccCC
Confidence 356999999997753
No 185
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.46 E-value=8.3 Score=19.71 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=11.8
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2emz_A 10 ERPFKCNECGKGFGR 24 (46)
T ss_dssp CCSCCCSSSCCCCSS
T ss_pred CCCeECCCCCcccCC
Confidence 456999999998753
No 186
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.29 E-value=8.3 Score=19.64 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytj_A 10 EKPYICAECGKAFT 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCChhhC
Confidence 45699999998775
No 187
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=46.24 E-value=7.5 Score=20.21 Aligned_cols=11 Identities=36% Similarity=1.168 Sum_probs=8.9
Q ss_pred CCceecccCCC
Q psy8140 78 KPKWNCPVCDK 88 (108)
Q Consensus 78 ~~~W~CPiC~~ 88 (108)
.+.|.||.|--
T Consensus 6 ~~~W~C~~CT~ 16 (34)
T 3a9j_C 6 GAQWNCTACTF 16 (34)
T ss_dssp CCCEECTTTCC
T ss_pred CCcCCCCCCcc
Confidence 46899999973
No 188
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.21 E-value=7.5 Score=19.84 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eq2_A 10 GKPYQCNECGKAFS 23 (46)
T ss_dssp SCSSSCCSSCCCCS
T ss_pred CCCeECCCCCcccC
Confidence 45689999999875
No 189
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.19 E-value=8.2 Score=19.67 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2eoq_A 10 EKPFKCDICGKSFC 23 (46)
T ss_dssp SCSCCCSSSCCCCS
T ss_pred CCCcCCCcCCchhC
Confidence 35689999999875
No 190
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.11 E-value=8.7 Score=19.62 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytq_A 10 EKPYGCSECGKAFS 23 (46)
T ss_dssp CCSCBCSSSCCBCS
T ss_pred CCCcCCCccChhhC
Confidence 45699999999775
No 191
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.98 E-value=8.2 Score=19.66 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=11.7
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2ytn_A 10 KKPYKCNECGKVFTQ 24 (46)
T ss_dssp CSSCBCTTTCCBCSS
T ss_pred CcCeECCCCCCeeCC
Confidence 456999999998753
No 192
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.94 E-value=8.5 Score=19.60 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=11.8
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2en3_A 10 EKPFQCKECGMNFSW 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCeeCcccChhhCC
Confidence 356999999998753
No 193
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.84 E-value=8.2 Score=19.66 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emh_A 10 ERPYICTVCGKAFT 23 (46)
T ss_dssp CCSEECTTTCCEES
T ss_pred CCCcCCCCCCchhC
Confidence 35699999998775
No 194
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.78 E-value=9.3 Score=19.40 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (47)
T 2epx_A 10 KKPYECIECGKAFI 23 (47)
T ss_dssp CCSBCCSSSCCCBS
T ss_pred CCCEECCccCchhC
Confidence 35699999999875
No 195
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.60 E-value=8.7 Score=19.50 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emm_A 10 ERPHKCNECGKSFI 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCCCCChhhC
Confidence 45699999998775
No 196
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.57 E-value=8.5 Score=19.74 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=11.7
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2eom_A 10 ERGHRCSDCGKFFLQ 24 (46)
T ss_dssp CSSCCCSSSCCCCSS
T ss_pred CCCcCCCCCCCeeCC
Confidence 356899999998753
No 197
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=45.49 E-value=16 Score=20.58 Aligned_cols=16 Identities=13% Similarity=0.403 Sum_probs=12.4
Q ss_pred cCCCceecccCCCccc
Q psy8140 76 ELKPKWNCPVCDKVGH 91 (108)
Q Consensus 76 ~~~~~W~CPiC~~~~~ 91 (108)
.....++|++|++.+.
T Consensus 41 ~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 41 TGEKPYRCNICGAQFN 56 (74)
T ss_dssp CCCCSEECTTTCCEES
T ss_pred CCCCCEECCCCCchhC
Confidence 3456799999998764
No 198
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.45 E-value=8.4 Score=19.55 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2eor_A 10 EKPYNCEECGKAFI 23 (46)
T ss_dssp CCSEECTTTCCEES
T ss_pred CcCccCCCCCCCcC
Confidence 45699999999775
No 199
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.45 E-value=9.3 Score=19.32 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 8 ~k~~~C~~C~k~f~ 21 (43)
T 2yrm_A 8 NGAFFCNECDCRFS 21 (43)
T ss_dssp SCCBCCSSSCCCBS
T ss_pred CCCEECCCCCCeeC
Confidence 35699999999875
No 200
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.44 E-value=8.8 Score=19.47 Aligned_cols=14 Identities=21% Similarity=0.506 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...+.|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (44)
T 2epv_A 10 EKPYECNECGKAFI 23 (44)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCcccC
Confidence 35699999999765
No 201
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.41 E-value=8.3 Score=19.72 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=11.7
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2enh_A 10 EKPYECDVCRKAFSH 24 (46)
T ss_dssp SSSCBCTTTCCBCSS
T ss_pred CCCcCCCCcCchhCC
Confidence 356999999998753
No 202
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.40 E-value=8.7 Score=19.62 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em8_A 10 EKPYKCVECGKGYK 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeECcccCchhC
Confidence 45699999999775
No 203
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=45.19 E-value=7.8 Score=19.06 Aligned_cols=13 Identities=15% Similarity=0.616 Sum_probs=10.6
Q ss_pred CceecccCCCccc
Q psy8140 79 PKWNCPVCDKVGH 91 (108)
Q Consensus 79 ~~W~CPiC~~~~~ 91 (108)
..++|++|++.+.
T Consensus 5 k~~~C~~C~k~f~ 17 (39)
T 1njq_A 5 RSYTCSFCKREFR 17 (39)
T ss_dssp SSEECTTTCCEES
T ss_pred CceECCCCCcccC
Confidence 4589999998764
No 204
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.18 E-value=7.7 Score=19.72 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytr_A 10 EKPYKCNECGKAFS 23 (46)
T ss_dssp CCTTCCTTTCCCCS
T ss_pred CcCcCCCCCCCccC
Confidence 45689999999875
No 205
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=45.16 E-value=8.9 Score=21.05 Aligned_cols=15 Identities=27% Similarity=0.405 Sum_probs=12.0
Q ss_pred CCCceecccCCCccc
Q psy8140 77 LKPKWNCPVCDKVGH 91 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~ 91 (108)
....++||+|++.+.
T Consensus 37 ~~~~~~C~~C~k~f~ 51 (66)
T 2drp_A 37 NVKVYPCPFCFKEFT 51 (66)
T ss_dssp SCCCEECTTTCCEES
T ss_pred CCcCeECCCCCCccC
Confidence 346799999998765
No 206
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=45.16 E-value=8.7 Score=19.57 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ema_A 10 EKRYKCNECGKVFS 23 (46)
T ss_dssp SCCEECSSSCCEES
T ss_pred CcCcCCCCCcchhC
Confidence 35699999998765
No 207
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=45.12 E-value=8.6 Score=19.64 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=11.2
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2el6_A 10 VNPYKCSQCEKSFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCCeECCCCCcccC
Confidence 35699999998764
No 208
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=44.70 E-value=7.1 Score=21.51 Aligned_cols=18 Identities=11% Similarity=0.219 Sum_probs=14.1
Q ss_pred CCCceecccCCCcccCCC
Q psy8140 77 LKPKWNCPVCDKVGHLIL 94 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~~~d 94 (108)
....+.||-|++.+...+
T Consensus 6 ~~~~~~C~~C~~~i~~~~ 23 (39)
T 2i5o_A 6 AEDQVPCEKCGSLVPVWD 23 (39)
T ss_dssp CCCEEECTTTCCEEEGGG
T ss_pred cCCCcccccccCcCCccc
Confidence 456789999999987543
No 209
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=44.62 E-value=1.6 Score=27.11 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=17.6
Q ss_pred HHHHhcCCCceecccCCCcccCCCe
Q psy8140 71 FIKMNELKPKWNCPVCDKVGHLILL 95 (108)
Q Consensus 71 fl~~~~~~~~W~CPiC~~~~~~~dL 95 (108)
||.+....+.-.||.|+..+.++.-
T Consensus 31 yl~ld~~~g~~~CpYCg~~f~l~~~ 55 (67)
T 2jrr_A 31 WLQIPEDTGWVECPYCDCKYVLKGS 55 (67)
T ss_dssp EEECCTTTSEEEETTTTEEEEETTS
T ss_pred EEEccCCCCeEECCCCCCEEEECCC
Confidence 4444335678899999998876653
No 210
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.53 E-value=9 Score=19.57 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=11.6
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...+.|++|++.+..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eoy_A 10 EKCFKCNKCEKTFSC 24 (46)
T ss_dssp SCCEECSSSCCEESS
T ss_pred CCCEECcCCCCcCCC
Confidence 356999999997753
No 211
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.40 E-value=8.3 Score=19.71 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytt_A 10 EKPYQCSECGKSFS 23 (46)
T ss_dssp CCTTCCSSSCCCCS
T ss_pred CCCeeCCCCCcccC
Confidence 45699999999875
No 212
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.35 E-value=7.1 Score=19.71 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=11.1
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~F~ 23 (44)
T 2eox_A 10 SKSYNCNECGKAFT 23 (44)
T ss_dssp CCCEEETTTTEEES
T ss_pred CCCeECcccCcccC
Confidence 35699999998765
No 213
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=44.35 E-value=2.8 Score=36.14 Aligned_cols=33 Identities=18% Similarity=0.572 Sum_probs=20.4
Q ss_pred ccccccccCccceecHHHHHHHhcCCCceecccCCCcc
Q psy8140 53 FPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVG 90 (108)
Q Consensus 53 ~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~ 90 (108)
.|+|=+.|+-. +..|.++ ...++|+||+|+..-
T Consensus 84 ~p~RC~rCray----iNPf~~f-~~~~~w~Cn~C~~~N 116 (751)
T 3eh1_A 84 TIVRCRSCRTY----INPFVSF-IDQRRWKCNLCYRVN 116 (751)
T ss_dssp CCCBCTTTCCB----CCTTCEE-SSSSEEECTTTCCEE
T ss_pred CCCcccCccCE----eCCceEE-ecCCEEEcccccCCC
Confidence 36666677653 2333333 235799999999643
No 214
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=44.13 E-value=9.5 Score=19.47 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2emk_A 10 EKPYECKECGKAFS 23 (46)
T ss_dssp SCSCBCSSSCCBCS
T ss_pred CCceECCCCCchhC
Confidence 35699999999875
No 215
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.09 E-value=9.1 Score=19.47 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2eq0_A 10 EKPYKCHECGKVFR 23 (46)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCeECCCCCchhC
Confidence 45699999998765
No 216
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=44.08 E-value=13 Score=19.76 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=11.8
Q ss_pred CCCceecccCCCccc
Q psy8140 77 LKPKWNCPVCDKVGH 91 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~ 91 (108)
....+.|++|++.+.
T Consensus 21 ~~k~~~C~~C~k~f~ 35 (54)
T 1yui_A 21 SEQPATCPICYAVIR 35 (54)
T ss_dssp SSCCEECTTTCCEES
T ss_pred CCCCccCCCCCcccC
Confidence 345699999998765
No 217
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.05 E-value=7.2 Score=19.86 Aligned_cols=14 Identities=21% Similarity=0.562 Sum_probs=11.2
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (45)
T 2epu_A 10 QKPFECTHCGKSFR 23 (45)
T ss_dssp CCSEEETTTTEEES
T ss_pred CcCccCCCCCCccC
Confidence 35699999998765
No 218
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.02 E-value=9.3 Score=19.51 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=11.6
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eoh_A 10 KKPYECKECRKTFIQ 24 (46)
T ss_dssp SCSCCCSSSCCCCSS
T ss_pred CCCcCCCCcCchhCC
Confidence 356899999998753
No 219
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.01 E-value=9.2 Score=19.46 Aligned_cols=15 Identities=27% Similarity=0.549 Sum_probs=11.7
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2yu8_A 10 EKPYKCNECGKVFTQ 24 (46)
T ss_dssp CSSEECSSSCCEESS
T ss_pred CCCeECCcCCchhCC
Confidence 456999999987753
No 220
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.96 E-value=9.6 Score=19.45 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2elz_A 10 EKPYKCEDCGKGYN 23 (46)
T ss_dssp CSSCBCSSSCCBCS
T ss_pred CCCeeCcccCchhC
Confidence 35699999999875
No 221
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=43.95 E-value=6.4 Score=18.65 Aligned_cols=12 Identities=33% Similarity=0.766 Sum_probs=9.3
Q ss_pred ceecccCCCccc
Q psy8140 80 KWNCPVCDKVGH 91 (108)
Q Consensus 80 ~W~CPiC~~~~~ 91 (108)
.++|++|++.+.
T Consensus 2 p~~C~~C~k~f~ 13 (32)
T 2kfq_A 2 AFACPACPKRFM 13 (32)
T ss_dssp CSSSSSSCTTHH
T ss_pred CCCCCCCCcccC
Confidence 378999998653
No 222
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.89 E-value=9.2 Score=19.40 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2eq4_A 10 EKLYNCKECGKSFS 23 (46)
T ss_dssp CCCCCBTTTTBCCS
T ss_pred CCCeECCCCCCccC
Confidence 35699999999875
No 223
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.82 E-value=9 Score=19.56 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2em4_A 10 QRPYECIECGKAFK 23 (46)
T ss_dssp SSSEECSSSCCEES
T ss_pred CcCcCCCCCCCccC
Confidence 35699999999775
No 224
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.78 E-value=9.6 Score=19.38 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2emp_A 10 VKPYMCNECGKAFS 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCchhC
Confidence 45699999999765
No 225
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.69 E-value=7.9 Score=19.73 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.2
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ysp_A 10 EKPYKCEKCGKGYN 23 (46)
T ss_dssp CCSEEETTTTEEES
T ss_pred CCCeECCCCCCccC
Confidence 45699999998764
No 226
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=43.66 E-value=9.4 Score=19.35 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2el4_A 10 VKPYGCSQCAKTFS 23 (46)
T ss_dssp CCSEECSSSSCEES
T ss_pred CCceECCCCCchhC
Confidence 45699999998775
No 227
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.51 E-value=9.7 Score=19.35 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2ytd_A 10 EKPYKCSECGKAFH 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CcCeECCCCCCeeC
Confidence 35699999998765
No 228
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.37 E-value=9.2 Score=19.39 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2en8_A 10 EKSHTCDECGKNFC 23 (46)
T ss_dssp CSSEECTTTCCEES
T ss_pred CCCeECCCcCcccC
Confidence 45699999998775
No 229
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=43.30 E-value=11 Score=22.51 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=13.3
Q ss_pred CCCceecccCCCcccCCCeee
Q psy8140 77 LKPKWNCPVCDKVGHLILLCM 97 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~~~dL~i 97 (108)
..+.|.||+|+++...++.-|
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI 25 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAI 25 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEE
T ss_pred CCCcCcCccCCCccCCCCCeE
Confidence 456799999999987655433
No 230
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.03 E-value=10 Score=19.30 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2ep0_A 10 EKPYKCDVCHKSFR 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCeeCcccCcccC
Confidence 45699999998765
No 231
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=42.78 E-value=11 Score=20.07 Aligned_cols=15 Identities=27% Similarity=0.674 Sum_probs=10.2
Q ss_pred CCCceecccCCCccc
Q psy8140 77 LKPKWNCPVCDKVGH 91 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~ 91 (108)
..+.|.|++|.-.=.
T Consensus 4 ~~G~W~C~~C~v~N~ 18 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNK 18 (34)
T ss_dssp --CCEECTTTCCEEC
T ss_pred CCCceECCeeEeECc
Confidence 467899999975433
No 232
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.77 E-value=10 Score=19.33 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...+.|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2eoo_A 10 ERPYGCNECGKNFG 23 (46)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCEEccccCcccC
Confidence 35699999999775
No 233
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=42.55 E-value=10 Score=19.23 Aligned_cols=14 Identities=29% Similarity=0.805 Sum_probs=11.2
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~F~ 23 (46)
T 2em0_A 10 EKTWKCRECDMCFS 23 (46)
T ss_dssp CCCCCCSSSCCCCS
T ss_pred CcCeECCCCCcccC
Confidence 35689999999875
No 234
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=42.37 E-value=15 Score=19.62 Aligned_cols=14 Identities=14% Similarity=0.617 Sum_probs=11.4
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 28 ~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 28 EKPYPCGLCNRAFT 41 (60)
T ss_dssp SCSEECTTTCCEES
T ss_pred CCCccCCCCCCccC
Confidence 45699999998764
No 235
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=42.26 E-value=10 Score=19.64 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=9.4
Q ss_pred CCCceecccCCC
Q psy8140 77 LKPKWNCPVCDK 88 (108)
Q Consensus 77 ~~~~W~CPiC~~ 88 (108)
+.+-|.||-|+.
T Consensus 2 k~gDW~C~~C~~ 13 (32)
T 2lk0_A 2 KFEDWLCNKCCL 13 (32)
T ss_dssp CCSEEECTTTCC
T ss_pred CCCCCCcCcCcC
Confidence 346799999975
No 236
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.04 E-value=8.1 Score=19.69 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2en1_A 10 EKPFKCEECGKRFT 23 (46)
T ss_dssp CCSEEETTTTEEES
T ss_pred CCCeeCCCCCcccC
Confidence 45699999998765
No 237
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.76 E-value=19 Score=26.55 Aligned_cols=40 Identities=18% Similarity=0.432 Sum_probs=26.4
Q ss_pred ccccccccCcccee---cHHHHHHHhcCCCceecccCCCcccCCC
Q psy8140 53 FPTKASTCAHLQCF---DGATFIKMNELKPKWNCPVCDKVGHLIL 94 (108)
Q Consensus 53 ~P~Rg~~C~H~qCF---Dl~~fl~~~~~~~~W~CPiC~~~~~~~d 94 (108)
.|+++..|.. || +-..|........-..||.||..+.+.+
T Consensus 194 v~v~~~~C~G--C~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~~~ 236 (256)
T 3na7_A 194 VTIKKQACGG--CFIRLNDKIYTEVLTSGDMITCPYCGRILYAEG 236 (256)
T ss_dssp EECBTTBCTT--TCCBCCHHHHHHHHHSSSCEECTTTCCEEECSC
T ss_pred EEeeCCccCC--CCeeeCHHHHHHHHCCCCEEECCCCCeeEEeCc
Confidence 3555555543 33 4555666666667899999999876553
No 238
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=41.69 E-value=16 Score=19.53 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 39 ~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 39 ERPHKCQVWVSGPS 52 (54)
T ss_dssp CCCCCSSSSCCSSC
T ss_pred CCCccCCCCCCCCC
Confidence 45699999998764
No 239
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.62 E-value=11 Score=19.16 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~k~~~C~~C~k~f~ 23 (46)
T 2enc_A 10 EKPFKCEECGKGFY 23 (46)
T ss_dssp CCSEECSSSCCEES
T ss_pred CCCcCCCCCCCcCC
Confidence 35699999998765
No 240
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.53 E-value=11 Score=19.09 Aligned_cols=14 Identities=14% Similarity=0.475 Sum_probs=11.3
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2yso_A 10 EKSHQCRECGEIFF 23 (46)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCEEccccChhhC
Confidence 35699999999775
No 241
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=41.35 E-value=7.9 Score=27.59 Aligned_cols=11 Identities=45% Similarity=1.138 Sum_probs=9.4
Q ss_pred ceecccCCCcc
Q psy8140 80 KWNCPVCDKVG 90 (108)
Q Consensus 80 ~W~CPiC~~~~ 90 (108)
.|+|++||-..
T Consensus 155 ~~~C~~CG~~~ 165 (191)
T 1lko_A 155 KWRCRNCGYVH 165 (191)
T ss_dssp EEEETTTCCEE
T ss_pred eEEECCCCCEe
Confidence 79999999654
No 242
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.28 E-value=9.6 Score=19.50 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=11.7
Q ss_pred CCceecccCCCcccC
Q psy8140 78 KPKWNCPVCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CPiC~~~~~~ 92 (108)
...++|++|++.+..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ytm_A 10 EKPYKCMECGKAFGD 24 (46)
T ss_dssp CCSSSBTTTTBCCSS
T ss_pred CCCcCCCCCCchhCC
Confidence 456899999998753
No 243
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=41.11 E-value=18 Score=18.17 Aligned_cols=13 Identities=8% Similarity=-0.025 Sum_probs=9.7
Q ss_pred hcCCCceecccCC
Q psy8140 75 NELKPKWNCPVCD 87 (108)
Q Consensus 75 ~~~~~~W~CPiC~ 87 (108)
......+.||+|+
T Consensus 33 H~~~~~~~C~~cg 45 (45)
T 2epq_A 33 HDGSVGKSGPSSG 45 (45)
T ss_dssp HSCCCCCCCCCCC
T ss_pred ccCCCCCCCcCCC
Confidence 3446679999996
No 244
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.94 E-value=8.1 Score=19.62 Aligned_cols=14 Identities=29% Similarity=0.626 Sum_probs=11.2
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~F~ 23 (46)
T 2eoe_A 10 EKPYKCNECGKVFT 23 (46)
T ss_dssp CCSSEETTTTEECS
T ss_pred CCCeECCCcChhhC
Confidence 45699999998765
No 245
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=40.47 E-value=9.3 Score=24.24 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=10.1
Q ss_pred CceecccCCCcc
Q psy8140 79 PKWNCPVCDKVG 90 (108)
Q Consensus 79 ~~W~CPiC~~~~ 90 (108)
+.|+||.|+..+
T Consensus 44 GiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 44 GIWQCSYCDYKF 55 (83)
T ss_dssp TEEEETTTCCEE
T ss_pred CeEECCCCCCEe
Confidence 589999999864
No 246
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=39.46 E-value=16 Score=20.26 Aligned_cols=26 Identities=8% Similarity=0.272 Sum_probs=16.8
Q ss_pred ecHHHHHHHh----cCCCceecccCCCccc
Q psy8140 66 FDGATFIKMN----ELKPKWNCPVCDKVGH 91 (108)
Q Consensus 66 FDl~~fl~~~----~~~~~W~CPiC~~~~~ 91 (108)
|....-|... .....++|++|++.+.
T Consensus 19 f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 19 CSSKAALRIHERIHCTDRPFKCNYCSFDTK 48 (70)
T ss_dssp ESSHHHHHHHHGGGCCSCSEECSSSSCEES
T ss_pred cCCHHHHHHHHHHcCCCCCEeCCCCCCccC
Confidence 6555555432 2345699999998775
No 247
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=38.50 E-value=10 Score=27.02 Aligned_cols=20 Identities=10% Similarity=0.278 Sum_probs=14.3
Q ss_pred CceecccCCCccc--CCCeeeh
Q psy8140 79 PKWNCPVCDKVGH--LILLCMA 98 (108)
Q Consensus 79 ~~W~CPiC~~~~~--~~dL~iD 98 (108)
..+.||+|++++. ...+.||
T Consensus 19 Q~g~C~IC~~~l~~~~~~~~vD 40 (157)
T 1e7l_A 19 QNGKCLICQRELNPDVQANHLD 40 (157)
T ss_dssp TTTBCTTTCCBCCSSGGGSEEE
T ss_pred hCCcCcccCCcccccccccccc
Confidence 4589999999864 2356666
No 248
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=38.21 E-value=25 Score=20.59 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=16.5
Q ss_pred ecHHHHHHH----hcCCCceecccCCCccc
Q psy8140 66 FDGATFIKM----NELKPKWNCPVCDKVGH 91 (108)
Q Consensus 66 FDl~~fl~~----~~~~~~W~CPiC~~~~~ 91 (108)
|.-..-|.. ......++|++|++.+.
T Consensus 57 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 86 (100)
T 2ebt_A 57 FARSDELTRHYRKHTGAKPFQCGVCNRSFS 86 (100)
T ss_dssp ESSHHHHHHHHHHHTSCCSCBCSSSCCBCS
T ss_pred cCCHHHHHHHHHHhCCCCCeECCCCcCccC
Confidence 554444443 33456699999998764
No 249
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=37.77 E-value=21 Score=18.34 Aligned_cols=28 Identities=7% Similarity=0.249 Sum_probs=16.4
Q ss_pred ccCccceecHHHHHHHhc----CCCceecccCCC
Q psy8140 59 TCAHLQCFDGATFIKMNE----LKPKWNCPVCDK 88 (108)
Q Consensus 59 ~C~H~qCFDl~~fl~~~~----~~~~W~CPiC~~ 88 (108)
.|... |--.+.|.... ....++|++|++
T Consensus 17 ~C~k~--f~~~~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 17 ICGKI--FRDVYHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp TTTEE--ESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred CCCcc--cCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence 34443 65555555432 245689999985
No 250
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=37.63 E-value=22 Score=19.94 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=11.7
Q ss_pred CCCceecccCCCccc
Q psy8140 77 LKPKWNCPVCDKVGH 91 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~ 91 (108)
....++|++|++.+.
T Consensus 54 ~~~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 54 GEKPHKCQVCGKAFS 68 (82)
T ss_dssp TCCCEECTTTSCEES
T ss_pred CCCCCcCCCcchhhC
Confidence 456799999998764
No 251
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.43 E-value=12 Score=21.67 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=8.6
Q ss_pred CCceecccCCC
Q psy8140 78 KPKWNCPVCDK 88 (108)
Q Consensus 78 ~~~W~CPiC~~ 88 (108)
...|.||+|--
T Consensus 9 ~~~W~C~~CT~ 19 (53)
T 2d9g_A 9 EGYWDCSVCTF 19 (53)
T ss_dssp CCCEECSSSCC
T ss_pred CCCcCCCCCcc
Confidence 45799999964
No 252
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=37.39 E-value=9.7 Score=19.88 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=10.9
Q ss_pred CceecccCCCccc
Q psy8140 79 PKWNCPVCDKVGH 91 (108)
Q Consensus 79 ~~W~CPiC~~~~~ 91 (108)
..++|+.|++.+.
T Consensus 7 kp~~C~~CgK~F~ 19 (36)
T 1fv5_A 7 ARFMCLPCGIAFS 19 (36)
T ss_dssp CCCEETTTTEECS
T ss_pred cCeECCCCCCccC
Confidence 4689999999875
No 253
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=37.23 E-value=16 Score=24.35 Aligned_cols=33 Identities=21% Similarity=0.529 Sum_probs=22.6
Q ss_pred eecCCCcccc------ccccccccccCccceecHHHHHHHhc
Q psy8140 41 SLICPLGKMR------MAFPTKASTCAHLQCFDGATFIKMNE 76 (108)
Q Consensus 41 sL~CPlS~~r------i~~P~Rg~~C~H~qCFDl~~fl~~~~ 76 (108)
.|+||||+.. +++-.-+..|.- ||.++|.++-.
T Consensus 27 ~l~CPITL~~PE~GVFvkNs~~S~VCsL---yD~~Al~~Lv~ 65 (102)
T 2kkx_A 27 AIQCPITLEQPEKGIFVKNSDGSDVCTL---FDAAAFSRLVG 65 (102)
T ss_dssp GGCBTTTTBCCSEEEEEEETTTTSEEEE---EEHHHHHHHHH
T ss_pred HcCCCeEEeeCCcceEEecCCCCcccee---cCHHHHHHHHh
Confidence 4899999642 444444555643 99999999743
No 254
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.96 E-value=11 Score=19.20 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=11.2
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 10 ~~~~~C~~C~k~f~ 23 (46)
T 2en6_A 10 EKPYGCNECGKTFS 23 (46)
T ss_dssp SCCEEETTTTEEES
T ss_pred CcCeECCCCCcccC
Confidence 45699999998765
No 255
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=36.50 E-value=23 Score=20.25 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=11.5
Q ss_pred CCCceecccCCCccc
Q psy8140 77 LKPKWNCPVCDKVGH 91 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~ 91 (108)
....++|++|++.+.
T Consensus 59 ~~~~~~C~~C~~~f~ 73 (90)
T 1a1h_A 59 GEKPFACDICGRKFA 73 (90)
T ss_dssp CCCCEECTTTCCEES
T ss_pred CCCCccCCCCCchhC
Confidence 356699999998764
No 256
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=36.35 E-value=13 Score=19.39 Aligned_cols=12 Identities=25% Similarity=0.991 Sum_probs=9.4
Q ss_pred CCCceecccCCC
Q psy8140 77 LKPKWNCPVCDK 88 (108)
Q Consensus 77 ~~~~W~CPiC~~ 88 (108)
+.+-|.||-|+.
T Consensus 3 ~~gDW~C~~C~~ 14 (33)
T 2k1p_A 3 SANDWQCKTCSN 14 (33)
T ss_dssp SSSSCBCSSSCC
T ss_pred CCCCcccCCCCC
Confidence 456799999974
No 257
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.24 E-value=14 Score=20.97 Aligned_cols=13 Identities=15% Similarity=0.521 Sum_probs=8.0
Q ss_pred CceecccCCCccc
Q psy8140 79 PKWNCPVCDKVGH 91 (108)
Q Consensus 79 ~~W~CPiC~~~~~ 91 (108)
..|+|++|++.+.
T Consensus 6 k~~~C~~C~k~f~ 18 (78)
T 2d9h_A 6 SGLQCEICGFTCR 18 (78)
T ss_dssp CCEECSSSCCEES
T ss_pred cCeECCCCCCeeC
Confidence 4567777776553
No 258
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=36.07 E-value=12 Score=22.76 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=21.4
Q ss_pred ecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCC
Q psy8140 42 LICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLIL 94 (108)
Q Consensus 42 L~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~d 94 (108)
|.||.++.++..=. ..+...||-|+...++.|
T Consensus 9 L~CP~ck~~L~~~~---------------------~~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQ---------------------DKQELWSRQAKLAYPIKD 40 (68)
T ss_dssp CBCSSSCCBCEEET---------------------TTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEeC---------------------CCCEEEcCCCCcEecCCC
Confidence 67888887766421 236788888887666543
No 259
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=36.05 E-value=12 Score=19.99 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=9.4
Q ss_pred eecccCCCccc
Q psy8140 81 WNCPVCDKVGH 91 (108)
Q Consensus 81 W~CPiC~~~~~ 91 (108)
+.||+|.+.+.
T Consensus 6 FiCP~C~~~l~ 16 (34)
T 3mjh_B 6 FICPQCMKSLG 16 (34)
T ss_dssp EECTTTCCEES
T ss_pred cCCcHHHHHcC
Confidence 78999998775
No 260
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=35.44 E-value=12 Score=22.76 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=20.4
Q ss_pred ecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCC
Q psy8140 42 LICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLI 93 (108)
Q Consensus 42 L~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~ 93 (108)
|.||.++.+++.=. ..+...||-|+...+..
T Consensus 11 L~CP~ck~~L~~~~---------------------~~g~LvC~~c~~~YPI~ 41 (67)
T 2jny_A 11 LACPKDKGPLRYLE---------------------SEQLLVNERLNLAYRID 41 (67)
T ss_dssp CBCTTTCCBCEEET---------------------TTTEEEETTTTEEEEEE
T ss_pred hCCCCCCCcCeEeC---------------------CCCEEEcCCCCccccCC
Confidence 67888887666421 24677888888765543
No 261
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.25 E-value=13 Score=21.12 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=16.6
Q ss_pred ecHHHHHHHhc-----C-CCceecccCCCccc
Q psy8140 66 FDGATFIKMNE-----L-KPKWNCPVCDKVGH 91 (108)
Q Consensus 66 FDl~~fl~~~~-----~-~~~W~CPiC~~~~~ 91 (108)
|...+-|.... . ...++|++|++.+.
T Consensus 25 f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~ 56 (77)
T 2ct1_A 25 FTQSGTMKMHILQKHTENVAKFHCPHCDTVIA 56 (77)
T ss_dssp ESCHHHHHHHHHHHSSSSCSSEECSSSSCEES
T ss_pred hCCHHHHHHHHHHhcCCCCCccCCCCCCCccC
Confidence 65555554321 1 25799999998764
No 262
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=34.74 E-value=14 Score=19.39 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=10.7
Q ss_pred CceecccCCCccc
Q psy8140 79 PKWNCPVCDKVGH 91 (108)
Q Consensus 79 ~~W~CPiC~~~~~ 91 (108)
..++|++|++.+.
T Consensus 6 kp~~C~~C~k~F~ 18 (48)
T 3iuf_A 6 KPYACDICGKRYK 18 (48)
T ss_dssp SCEECTTTCCEES
T ss_pred cCEECCCcCcccC
Confidence 4589999998775
No 263
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=34.73 E-value=30 Score=25.51 Aligned_cols=19 Identities=26% Similarity=0.677 Sum_probs=14.7
Q ss_pred ceecccCCCcccC---CCeeeh
Q psy8140 80 KWNCPVCDKVGHL---ILLCMA 98 (108)
Q Consensus 80 ~W~CPiC~~~~~~---~dL~iD 98 (108)
.+.||+|+++... .++.+|
T Consensus 137 ~G~C~ICg~~~~~~~~k~lvVD 158 (200)
T 3gox_A 137 VFTCPICEKRSIVGVTANLVHD 158 (200)
T ss_dssp EEECTTTCCEEEBTTTBCEEEE
T ss_pred CCcCcCCCCCCCcCcccceeee
Confidence 4999999997763 457776
No 264
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=34.61 E-value=26 Score=19.96 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=11.8
Q ss_pred CCCceecccCCCccc
Q psy8140 77 LKPKWNCPVCDKVGH 91 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~ 91 (108)
....++|++|++.+.
T Consensus 62 ~~~~~~C~~C~~~f~ 76 (89)
T 2wbs_A 62 GHRPFQCQKCDRAFS 76 (89)
T ss_dssp CCCCEECSSSSCEES
T ss_pred CCCCccCCCCCcccC
Confidence 456799999998764
No 265
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=34.46 E-value=13 Score=22.65 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=22.2
Q ss_pred ecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCC
Q psy8140 42 LICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLIL 94 (108)
Q Consensus 42 L~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~d 94 (108)
|.||.++.++..=. ..+...||-|+...++.|
T Consensus 9 L~CP~ck~~L~~~~---------------------~~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 9 LVCPLCKGPLVFDK---------------------SKDELICKGDRLAFPIKD 40 (68)
T ss_dssp CBCTTTCCBCEEET---------------------TTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEeC---------------------CCCEEEcCCCCcEecCCC
Confidence 68898887766421 246788999987766544
No 266
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=34.11 E-value=24 Score=21.60 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=19.7
Q ss_pred cccccCcccee-cHHHHHHHhc---CCCceecccCCCccc
Q psy8140 56 KASTCAHLQCF-DGATFIKMNE---LKPKWNCPVCDKVGH 91 (108)
Q Consensus 56 Rg~~C~H~qCF-Dl~~fl~~~~---~~~~W~CPiC~~~~~ 91 (108)
.=..|... | .-.+-|.... ....+.|++|++.+.
T Consensus 36 ~C~~C~k~--F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 36 SCPTCQAV--GRKTIEGLKKHMENCKQEMFTCHHCGKQLR 73 (96)
T ss_dssp ECTTTCSC--EESSHHHHHHHHHHHCCCCCCCSSSCCCCS
T ss_pred CCCCCCCC--cccCHHHHHHHHHHHCCCCeECCCCCCeeC
Confidence 33345554 7 6776665422 345577888877664
No 267
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.57 E-value=26 Score=19.57 Aligned_cols=13 Identities=8% Similarity=0.286 Sum_probs=8.9
Q ss_pred CCceecccCCCcc
Q psy8140 78 KPKWNCPVCDKVG 90 (108)
Q Consensus 78 ~~~W~CPiC~~~~ 90 (108)
...++|++|++.+
T Consensus 66 ~~~~~C~~C~k~F 78 (79)
T 2dlk_A 66 TRDYICEFSGPSS 78 (79)
T ss_dssp SCCCSCCSSSCCC
T ss_pred CCCeeCCCCCCCC
Confidence 4557888887754
No 268
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.45 E-value=29 Score=20.86 Aligned_cols=11 Identities=27% Similarity=0.766 Sum_probs=5.9
Q ss_pred ceecccCCCcc
Q psy8140 80 KWNCPVCDKVG 90 (108)
Q Consensus 80 ~W~CPiC~~~~ 90 (108)
.++|++|++.+
T Consensus 65 ~~~C~~C~~~f 75 (110)
T 2csh_A 65 PYECNICAKRF 75 (110)
T ss_dssp CEECSSSCCEE
T ss_pred CeeCCCCcchh
Confidence 45555555544
No 269
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=33.17 E-value=12 Score=22.85 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=20.4
Q ss_pred ecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCC
Q psy8140 42 LICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLIL 94 (108)
Q Consensus 42 L~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~d 94 (108)
|.||.++..+..=. ..+...||-|+...+..|
T Consensus 9 L~CP~ck~~L~~~~---------------------~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 9 LACPICKGPLKLSA---------------------DKTELISKGAGLAYPIRD 40 (69)
T ss_dssp CCCTTTCCCCEECT---------------------TSSEEEETTTTEEEEEET
T ss_pred eeCCCCCCcCeEeC---------------------CCCEEEcCCCCcEecCcC
Confidence 67888877665411 236678888887665443
No 270
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=33.16 E-value=2.2 Score=27.30 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=16.2
Q ss_pred HHHHhcCCCceecccCCCcccCC
Q psy8140 71 FIKMNELKPKWNCPVCDKVGHLI 93 (108)
Q Consensus 71 fl~~~~~~~~W~CPiC~~~~~~~ 93 (108)
||.+....+.-.||.|+..+.++
T Consensus 44 yL~ld~~~g~~~CpYCg~~f~l~ 66 (80)
T 2jvm_A 44 WLSIPHETGFVECGYCDRRYIHE 66 (80)
T ss_dssp EEECCTTTCEEECSSSSCEEEEH
T ss_pred EEEccCCCCeEECCCCCCEEEec
Confidence 45554456789999999877543
No 271
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=32.98 E-value=32 Score=20.41 Aligned_cols=11 Identities=27% Similarity=0.845 Sum_probs=5.2
Q ss_pred ceecccCCCcc
Q psy8140 80 KWNCPVCDKVG 90 (108)
Q Consensus 80 ~W~CPiC~~~~ 90 (108)
.++|++|++.+
T Consensus 45 ~~~C~~C~~~f 55 (106)
T 2ee8_A 45 PYTCDICHKAF 55 (106)
T ss_dssp CCBCSSSCCBC
T ss_pred CcCCCCccchh
Confidence 34555554443
No 272
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=32.50 E-value=28 Score=20.21 Aligned_cols=15 Identities=13% Similarity=0.541 Sum_probs=11.4
Q ss_pred CCCceecccCCCccc
Q psy8140 77 LKPKWNCPVCDKVGH 91 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~ 91 (108)
....++|++|++.+.
T Consensus 61 ~~~~~~C~~C~~~f~ 75 (96)
T 2dmd_A 61 DERPFKCQICPYASR 75 (96)
T ss_dssp CCCCEECSSSSCEES
T ss_pred CCCCccCCCCCCccC
Confidence 345699999998764
No 273
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=32.15 E-value=15 Score=22.52 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=21.8
Q ss_pred ecCCCccccccccccccccCccceecHHHHHHHhcCCCceecccCCCcccCCC
Q psy8140 42 LICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLIL 94 (108)
Q Consensus 42 L~CPlS~~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~~d 94 (108)
|.||.++..+..=. ..+...||-|+...++.|
T Consensus 9 L~CP~ck~~L~~~~---------------------~~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 9 LVCPVCKGRLEFQR---------------------AQAELVCNADRLAFPVRD 40 (70)
T ss_dssp CBCTTTCCBEEEET---------------------TTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCEEeC---------------------CCCEEEcCCCCceecCCC
Confidence 67888888766421 246788998887666543
No 274
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.00 E-value=13 Score=22.49 Aligned_cols=12 Identities=33% Similarity=0.755 Sum_probs=6.0
Q ss_pred CceecccCCCcc
Q psy8140 79 PKWNCPVCDKVG 90 (108)
Q Consensus 79 ~~W~CPiC~~~~ 90 (108)
..++|++|++.+
T Consensus 23 ~~~~C~~C~k~f 34 (98)
T 2gqj_A 23 GEAVCPTCNVVT 34 (98)
T ss_dssp SCCCCTTTCCCC
T ss_pred CCcCCCCCCCCh
Confidence 345555555544
No 275
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=31.73 E-value=18 Score=24.36 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=19.6
Q ss_pred cccccCccc-eecHHHHHHHhcCCCceecccCCCc
Q psy8140 56 KASTCAHLQ-CFDGATFIKMNELKPKWNCPVCDKV 89 (108)
Q Consensus 56 Rg~~C~H~q-CFDl~~fl~~~~~~~~W~CPiC~~~ 89 (108)
.+..|.|+. +.++...-........|.|+.|.+.
T Consensus 3 ~~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~ 37 (126)
T 2i50_A 3 HMPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTD 37 (126)
T ss_dssp --CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTC
T ss_pred CCCCCcChhhccccccccccccCCCCCcCcccccc
Confidence 367899984 4555433222233445899999874
No 276
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=31.70 E-value=30 Score=20.05 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=8.0
Q ss_pred CceecccCCCccc
Q psy8140 79 PKWNCPVCDKVGH 91 (108)
Q Consensus 79 ~~W~CPiC~~~~~ 91 (108)
..++|++|++.+.
T Consensus 64 ~~~~C~~C~~~f~ 76 (95)
T 2yt9_A 64 KPYICQSCGKGFS 76 (95)
T ss_dssp SSBCCSSSCCCBS
T ss_pred CceECCCccchhC
Confidence 4567777766553
No 277
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=31.22 E-value=19 Score=21.20 Aligned_cols=12 Identities=33% Similarity=1.154 Sum_probs=9.8
Q ss_pred CCceecccCCCc
Q psy8140 78 KPKWNCPVCDKV 89 (108)
Q Consensus 78 ~~~W~CPiC~~~ 89 (108)
...|+|+.|++.
T Consensus 9 eD~WkC~~C~k~ 20 (53)
T 2cr8_A 9 EDEWQCTECKKF 20 (53)
T ss_dssp SCCEECSSSCCE
T ss_pred cceeeccccccc
Confidence 468999999964
No 278
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.72 E-value=16 Score=20.84 Aligned_cols=13 Identities=23% Similarity=0.792 Sum_probs=10.2
Q ss_pred CCCceecccCCCc
Q psy8140 77 LKPKWNCPVCDKV 89 (108)
Q Consensus 77 ~~~~W~CPiC~~~ 89 (108)
..+.|.|++|.-.
T Consensus 8 ~~gsW~C~~C~v~ 20 (47)
T 2ebr_A 8 PEGSWDCELCLVQ 20 (47)
T ss_dssp CCSSCCCSSSCCC
T ss_pred CCCeeECCeeecC
Confidence 4578999999754
No 279
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=30.58 E-value=19 Score=24.78 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.4
Q ss_pred cHHHHHHHhcCCCceecccC
Q psy8140 67 DGATFIKMNELKPKWNCPVC 86 (108)
Q Consensus 67 Dl~~fl~~~~~~~~W~CPiC 86 (108)
+|..||+..-+++.|-|||=
T Consensus 46 qLr~fLklAl~TPvWlnPI~ 65 (137)
T 1jvr_A 46 QLRRFLKLALKTPIWLNPID 65 (137)
T ss_dssp HHHHHHHHHHTCTTSTTTTC
T ss_pred HHHHHHHHHhcCcccccchh
Confidence 46778888888999999983
No 280
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=30.58 E-value=18 Score=20.77 Aligned_cols=11 Identities=27% Similarity=1.189 Sum_probs=9.3
Q ss_pred CceecccCCCc
Q psy8140 79 PKWNCPVCDKV 89 (108)
Q Consensus 79 ~~W~CPiC~~~ 89 (108)
..|+|+-|++.
T Consensus 12 D~WkC~~C~~~ 22 (46)
T 2c6a_A 12 DYWKCTSCNEM 22 (46)
T ss_dssp GCEECTTTCCE
T ss_pred ceEeccccccc
Confidence 68999999963
No 281
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.22 E-value=19 Score=21.16 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=25.5
Q ss_pred ccccccccccCcc-ceecHHHHHHH--hcCCCceecccCCCcccCCCee
Q psy8140 51 MAFPTKASTCAHL-QCFDGATFIKM--NELKPKWNCPVCDKVGHLILLC 96 (108)
Q Consensus 51 i~~P~Rg~~C~H~-qCFDl~~fl~~--~~~~~~W~CPiC~~~~~~~dL~ 96 (108)
...|.|...|.+= .-|-...+-.- .-......||.|++.+...+|.
T Consensus 11 ~~c~~r~~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~~~~~l~ 59 (75)
T 2d9k_A 11 TECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLK 59 (75)
T ss_dssp CCCCCCCEECSSSCCEECHHHHHHHHHHHHHCEEECSSSCCEEETTGGG
T ss_pred ccCCCcccCCcccChHhhHHHHHHHHhHcCCCceEcccCCCcCcHHHHH
Confidence 3445555555431 12544433322 1224669999999988776664
No 282
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=30.04 E-value=47 Score=18.15 Aligned_cols=27 Identities=11% Similarity=0.348 Sum_probs=17.4
Q ss_pred ecHHHHHHH-hcCCCceecccCCCcccC
Q psy8140 66 FDGATFIKM-NELKPKWNCPVCDKVGHL 92 (108)
Q Consensus 66 FDl~~fl~~-~~~~~~W~CPiC~~~~~~ 92 (108)
|...+-|.. ......++|++|++.+..
T Consensus 24 F~~~~~l~~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 24 FTDLEANQLFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp EEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred hccHHHhHhhcCCCCCEECCCCCCcccc
Confidence 655555542 223467999999987753
No 283
>1oqe_K Tumor necrosis factor receptor superfamily member 13C; ligand receptor complex, immune system; 2.50A {Homo sapiens} SCOP: g.24.1.2
Probab=29.88 E-value=19 Score=18.96 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=9.2
Q ss_pred cccCccceecH
Q psy8140 58 STCAHLQCFDG 68 (108)
Q Consensus 58 ~~C~H~qCFDl 68 (108)
..|...||||.
T Consensus 2 t~C~q~~CfDp 12 (31)
T 1oqe_K 2 TPCVPAECFDL 12 (31)
T ss_dssp CCCCTTEEEET
T ss_pred CccccccccCh
Confidence 46889999995
No 284
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=29.49 E-value=6.7 Score=25.72 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=15.1
Q ss_pred ccceecHHHHHHHhcCCCceecccC
Q psy8140 62 HLQCFDGATFIKMNELKPKWNCPVC 86 (108)
Q Consensus 62 H~qCFDl~~fl~~~~~~~~W~CPiC 86 (108)
|..|-++..=+........|.||.|
T Consensus 34 H~~Cl~~~~~~~~~~~~~~W~C~~C 58 (114)
T 2kwj_A 34 HPTCLQFTLNMTEAVKTYKWQCIEC 58 (114)
T ss_dssp CTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred chhhCCChhhhhhccCCCccCcccc
Confidence 7777765432222334568998876
No 285
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=29.11 E-value=36 Score=19.64 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=11.7
Q ss_pred CCCceecccCCCccc
Q psy8140 77 LKPKWNCPVCDKVGH 91 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~ 91 (108)
....++|++|++.+.
T Consensus 28 ~~~~~~C~~C~k~f~ 42 (88)
T 1llm_C 28 GEKPFACDICGRKFA 42 (88)
T ss_dssp CCCCEECTTTCCEES
T ss_pred CCCCccCCCCCCccC
Confidence 345699999998764
No 286
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=28.61 E-value=7.7 Score=25.29 Aligned_cols=27 Identities=19% Similarity=0.559 Sum_probs=15.7
Q ss_pred CccceecHHHHHHHhcCCCceecccCC
Q psy8140 61 AHLQCFDGATFIKMNELKPKWNCPVCD 87 (108)
Q Consensus 61 ~H~qCFDl~~fl~~~~~~~~W~CPiC~ 87 (108)
.|..|.++..=+........|.||-|.
T Consensus 36 ~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 36 GHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp ECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CCCchhcCCHHHHHHhhccccccccCC
Confidence 477676543222223346789999874
No 287
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=28.21 E-value=12 Score=25.68 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=18.5
Q ss_pred ccccccccCccceecHHHHHHHhcCCCceecccCCCcc
Q psy8140 53 FPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVG 90 (108)
Q Consensus 53 ~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~ 90 (108)
+=.|=..|.|. |+.. .+.-.||.||..+
T Consensus 131 ~~y~C~~Cg~~--~~~~--------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 131 WRYVCIGCGRK--FSTL--------PPGGVCPDCGSKV 158 (165)
T ss_dssp CCEEESSSCCE--ESSC--------CGGGBCTTTCCBE
T ss_pred EEEECCCCCCc--ccCC--------CCCCcCCCCCCcc
Confidence 33555668887 7643 3345899999865
No 288
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.98 E-value=42 Score=20.23 Aligned_cols=26 Identities=12% Similarity=0.323 Sum_probs=15.5
Q ss_pred ecHHHHHHH----hcCCCceecccCCCccc
Q psy8140 66 FDGATFIKM----NELKPKWNCPVCDKVGH 91 (108)
Q Consensus 66 FDl~~fl~~----~~~~~~W~CPiC~~~~~ 91 (108)
|.-..-|.. ......++|++|++.+.
T Consensus 76 f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 105 (124)
T 2dlq_A 76 FRRRMELRLHMVSHTGEMPYKCSSCSQQFM 105 (124)
T ss_dssp ESSHHHHHHHHHHHSSSCSEECSSSCCEES
T ss_pred cCCHHHHHHHHHHcCCCCCccCCCccchhC
Confidence 554444442 22345688888887664
No 289
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=27.34 E-value=39 Score=20.26 Aligned_cols=12 Identities=17% Similarity=0.617 Sum_probs=5.8
Q ss_pred CceecccCCCcc
Q psy8140 79 PKWNCPVCDKVG 90 (108)
Q Consensus 79 ~~W~CPiC~~~~ 90 (108)
..++|++|++.+
T Consensus 65 ~~~~C~~C~~~f 76 (119)
T 2jp9_A 65 KPFQCKTCQRKF 76 (119)
T ss_dssp CCEECTTTCCEE
T ss_pred CCccCCccCchh
Confidence 345555555443
No 290
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=26.65 E-value=32 Score=25.14 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=22.1
Q ss_pred ccCccceecHHHHHHHhcCCCceecccCCCcccC
Q psy8140 59 TCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHL 92 (108)
Q Consensus 59 ~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~~~~ 92 (108)
.|.+. ||.+.++.+-.....-.||.|+..+++
T Consensus 126 ~C~~~--~~~~~~~~~~~~~~~p~C~~Cgg~lrP 157 (246)
T 1yc5_A 126 RCEKK--YTVEDVIKKLESSDVPLCDDCNSLIRP 157 (246)
T ss_dssp TTCCE--EEHHHHHHHTTTCSSCBCTTTCCBEEE
T ss_pred CCCCC--CcHHHHHHHhccCCCCCCCCCCCccCc
Confidence 47775 888877664333245689999987664
No 291
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.58 E-value=57 Score=18.20 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=19.8
Q ss_pred cccCccceecHHHHHHHhc----CCCceecccCCCccc
Q psy8140 58 STCAHLQCFDGATFIKMNE----LKPKWNCPVCDKVGH 91 (108)
Q Consensus 58 ~~C~H~qCFDl~~fl~~~~----~~~~W~CPiC~~~~~ 91 (108)
..|.-. |.-..-|.... ....++|++|++.+.
T Consensus 22 ~~C~~~--f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 22 DECGKS--FSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp SSSCCB--CSCHHHHHHHHTTTCCSCSEECSSSCCEES
T ss_pred CCCCcc--cCCHHHHHHHHHHcCCCcCeeCCCCCCccC
Confidence 345544 66555555422 245699999998764
No 292
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=26.19 E-value=27 Score=15.73 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=9.2
Q ss_pred ceecc--cCCCccc
Q psy8140 80 KWNCP--VCDKVGH 91 (108)
Q Consensus 80 ~W~CP--iC~~~~~ 91 (108)
.+.|+ .|++.+.
T Consensus 2 p~~C~~~~C~k~f~ 15 (31)
T 1sp2_A 2 PFMCTWSYCGKRFT 15 (31)
T ss_dssp CCBCCSTTCCCBCS
T ss_pred CcCCcCCCCCcccC
Confidence 36887 8998775
No 293
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.80 E-value=29 Score=15.69 Aligned_cols=12 Identities=33% Similarity=0.672 Sum_probs=9.7
Q ss_pred ceecc--cCCCccc
Q psy8140 80 KWNCP--VCDKVGH 91 (108)
Q Consensus 80 ~W~CP--iC~~~~~ 91 (108)
.+.|+ .|++.+.
T Consensus 3 ~~~C~~~~C~k~f~ 16 (32)
T 1zfd_A 3 PYSCDHPGCDKAFV 16 (32)
T ss_dssp SBCCCCTTCCCCBS
T ss_pred CCcCcCCCCCCccC
Confidence 47898 8998775
No 294
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=25.63 E-value=23 Score=23.72 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=13.2
Q ss_pred ceecccCCCcccCCCee
Q psy8140 80 KWNCPVCDKVGHLILLC 96 (108)
Q Consensus 80 ~W~CPiC~~~~~~~dL~ 96 (108)
--+||+|+..+.+..++
T Consensus 29 dGkC~iCDs~Vrp~~~V 45 (109)
T 2k0a_A 29 DGKCPICDSYVRPKRKV 45 (109)
T ss_dssp TTCCTTTCCCCCCCEEC
T ss_pred CCcccccCCccCCcceE
Confidence 36899999988876553
No 295
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=24.99 E-value=43 Score=18.95 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=19.6
Q ss_pred ccCccceecHHHHHHH----hcCCCceecccCCCccc
Q psy8140 59 TCAHLQCFDGATFIKM----NELKPKWNCPVCDKVGH 91 (108)
Q Consensus 59 ~C~H~qCFDl~~fl~~----~~~~~~W~CPiC~~~~~ 91 (108)
.|.-. |--.+-|.. ......++|++|++.+.
T Consensus 9 ~C~k~--F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 9 FCGKT--YRDASGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp TTCCE--ESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred CCCCE--eCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 34443 655555543 33456799999999775
No 296
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=24.20 E-value=24 Score=15.34 Aligned_cols=12 Identities=17% Similarity=0.492 Sum_probs=9.3
Q ss_pred ceecc--cCCCccc
Q psy8140 80 KWNCP--VCDKVGH 91 (108)
Q Consensus 80 ~W~CP--iC~~~~~ 91 (108)
.+.|+ .|++.+.
T Consensus 2 ~~~C~~~~C~k~f~ 15 (29)
T 2ab3_A 2 VYVCHFENCGRSFN 15 (29)
T ss_dssp CEEECSTTTCEEES
T ss_pred CCCCcCCcCcCccC
Confidence 47899 9998764
No 297
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=24.13 E-value=31 Score=20.56 Aligned_cols=14 Identities=14% Similarity=0.276 Sum_probs=10.7
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
.+.|.||.|.....
T Consensus 48 ~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 48 GTGLRCRSCSGDVT 61 (66)
T ss_dssp SSSCCCTTTTTCCC
T ss_pred CCCEECccccCCCc
Confidence 56799999986543
No 298
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.62 E-value=34 Score=22.74 Aligned_cols=32 Identities=22% Similarity=0.582 Sum_probs=24.3
Q ss_pred ccccccccccccCccceecHHHHHHHhcCCCceecccCCCc
Q psy8140 49 MRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKV 89 (108)
Q Consensus 49 ~ri~~P~Rg~~C~H~qCFDl~~fl~~~~~~~~W~CPiC~~~ 89 (108)
+-+..|.+=..|.+. | .......-+||.|+..
T Consensus 62 ~L~v~p~~C~~CG~~--F-------~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFV--F-------KAEINIPSRCPKCKSE 93 (105)
T ss_dssp EEEECCCBBTTTCCB--C-------CCCSSCCSSCSSSCCC
T ss_pred EEEEECcChhhCcCe--e-------cccCCCCCCCcCCCCC
Confidence 567899999999998 7 1233456899999863
No 299
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=23.59 E-value=19 Score=20.95 Aligned_cols=13 Identities=46% Similarity=1.234 Sum_probs=10.1
Q ss_pred CCCceecccCCCc
Q psy8140 77 LKPKWNCPVCDKV 89 (108)
Q Consensus 77 ~~~~W~CPiC~~~ 89 (108)
..+.|.||.|.+.
T Consensus 46 p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 46 PEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCCCTTGGGG
T ss_pred CCCceECcccccc
Confidence 3578999999753
No 300
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=23.32 E-value=17 Score=30.57 Aligned_cols=10 Identities=40% Similarity=1.381 Sum_probs=0.0
Q ss_pred CCceecccCC
Q psy8140 78 KPKWNCPVCD 87 (108)
Q Consensus 78 ~~~W~CPiC~ 87 (108)
..+|.||||+
T Consensus 115 ~~tWvC~ICs 124 (566)
T 1w7p_D 115 VSTWVCPICM 124 (566)
T ss_dssp ----------
T ss_pred ccceeccccc
Confidence 4679999997
No 301
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.67 E-value=25 Score=19.32 Aligned_cols=11 Identities=36% Similarity=1.392 Sum_probs=9.1
Q ss_pred CCceecccCCC
Q psy8140 78 KPKWNCPVCDK 88 (108)
Q Consensus 78 ~~~W~CPiC~~ 88 (108)
.+.|.||.|..
T Consensus 39 ~g~W~C~~C~~ 49 (51)
T 1f62_A 39 DGEWQCPACQP 49 (51)
T ss_dssp SSCCSCTTTSC
T ss_pred CCcEECcCccc
Confidence 46899999975
No 302
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.64 E-value=35 Score=18.51 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=10.5
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...+.|++|++.+.
T Consensus 16 ~~~~~C~~C~k~f~ 29 (73)
T 2ctu_A 16 DRSQKCSKCGIIFI 29 (73)
T ss_dssp CSEEECSSSCCEEE
T ss_pred CCCeeCCcccchhC
Confidence 35689999998764
No 303
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.58 E-value=38 Score=19.62 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=12.7
Q ss_pred CCCceecccCCCcccC
Q psy8140 77 LKPKWNCPVCDKVGHL 92 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~~ 92 (108)
...+..||-|+....+
T Consensus 9 ~~~~~~CPrCn~~f~~ 24 (49)
T 2e72_A 9 DGGRKICPRCNAQFRV 24 (49)
T ss_dssp CSSCCCCTTTCCCCSS
T ss_pred cCCceeCCcccccccc
Confidence 4577899999998763
No 304
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.03 E-value=32 Score=20.81 Aligned_cols=14 Identities=14% Similarity=0.327 Sum_probs=11.0
Q ss_pred CCceecccCCCccc
Q psy8140 78 KPKWNCPVCDKVGH 91 (108)
Q Consensus 78 ~~~W~CPiC~~~~~ 91 (108)
...++|++|++.+.
T Consensus 78 ~~~~~C~~C~k~f~ 91 (115)
T 2dmi_A 78 QKVLKCMYCGHSFE 91 (115)
T ss_dssp CSSCBCSSSCCBCS
T ss_pred CcceECCCCCCccC
Confidence 45689999998765
No 305
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.86 E-value=30 Score=19.70 Aligned_cols=12 Identities=25% Similarity=0.775 Sum_probs=9.5
Q ss_pred CCceecccCCCc
Q psy8140 78 KPKWNCPVCDKV 89 (108)
Q Consensus 78 ~~~W~CPiC~~~ 89 (108)
.+.|.|+.|--.
T Consensus 9 ~g~W~C~~C~v~ 20 (47)
T 2ebq_A 9 IGTWDCDTCLVQ 20 (47)
T ss_dssp SSSEECSSSCCE
T ss_pred CCceECCeeecc
Confidence 578999999743
No 306
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=21.56 E-value=30 Score=20.04 Aligned_cols=24 Identities=25% Similarity=0.693 Sum_probs=15.7
Q ss_pred Cccceec--HHHHHHHhcCCCceecccCCCc
Q psy8140 61 AHLQCFD--GATFIKMNELKPKWNCPVCDKV 89 (108)
Q Consensus 61 ~H~qCFD--l~~fl~~~~~~~~W~CPiC~~~ 89 (108)
-|+.|.+ +.. .-.+.|.||.|...
T Consensus 31 fH~~Cl~ppl~~-----~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 31 YHIHCLNPPLPE-----IPNGEWLCPRCTCP 56 (61)
T ss_dssp BCSSSSSSCCSS-----CCSSCCCCTTTTTT
T ss_pred HcccccCCCcCc-----CCCCccCChhhcCc
Confidence 4776666 321 23578999999764
No 307
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=21.49 E-value=22 Score=28.69 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=29.6
Q ss_pred eeecCCCcccccc----ccc---cccccCccceecH---HHHHHHhcC------CCceecccCCCccc
Q psy8140 40 SSLICPLGKMRMA----FPT---KASTCAHLQCFDG---ATFIKMNEL------KPKWNCPVCDKVGH 91 (108)
Q Consensus 40 vsL~CPlS~~ri~----~P~---Rg~~C~H~qCFDl---~~fl~~~~~------~~~W~CPiC~~~~~ 91 (108)
..--|+|=+..+. +|. .+..|+|. |.. ..|+..... .-.-.||.|+++++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~--FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLK--CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC--BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCc--cchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 3456777665544 353 36678776 653 344443221 23479999999775
No 308
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=21.45 E-value=27 Score=20.18 Aligned_cols=11 Identities=36% Similarity=1.072 Sum_probs=8.5
Q ss_pred CCceecccCCC
Q psy8140 78 KPKWNCPVCDK 88 (108)
Q Consensus 78 ~~~W~CPiC~~ 88 (108)
...|.||.|--
T Consensus 8 ~~~W~Cp~CTf 18 (52)
T 2crc_A 8 PVGWQCPGCTF 18 (52)
T ss_dssp SSSBCCTTTCC
T ss_pred CCCccCCCccc
Confidence 35799999873
No 309
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=20.88 E-value=29 Score=24.31 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=11.4
Q ss_pred CCCceecccCCCcc
Q psy8140 77 LKPKWNCPVCDKVG 90 (108)
Q Consensus 77 ~~~~W~CPiC~~~~ 90 (108)
..+.|.|+-|++..
T Consensus 59 ~~g~~~CekC~~~~ 72 (181)
T 1l1o_C 59 QNGLYRCEKCDTEF 72 (181)
T ss_dssp TTTEEEETTTTEEE
T ss_pred CCCeEECCCCCCcC
Confidence 35789999999764
No 310
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=20.87 E-value=16 Score=23.40 Aligned_cols=25 Identities=16% Similarity=0.551 Sum_probs=16.4
Q ss_pred cCccceecHHHHHHHhcCCCceecccCCC
Q psy8140 60 CAHLQCFDGATFIKMNELKPKWNCPVCDK 88 (108)
Q Consensus 60 C~H~qCFDl~~fl~~~~~~~~W~CPiC~~ 88 (108)
-.|+.|..+.. ..-...|.||.|..
T Consensus 51 w~H~~C~~~~~----~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 51 WQHIDCMGIDR----QHIPDTYLCERCQP 75 (98)
T ss_dssp EEETTTTTCCT----TSCCSSBCCTTTSS
T ss_pred cCcCcCCCCCc----cCCCCCEECCCCcC
Confidence 35888876531 22335799999964
No 311
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=20.72 E-value=58 Score=21.05 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.3
Q ss_pred CCCceecccCCCcccCCCeeeh
Q psy8140 77 LKPKWNCPVCDKVGHLILLCMA 98 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~~~dL~iD 98 (108)
.+++-.|-.|++.|.-.+|+|-
T Consensus 22 kS~Ra~Ck~C~~kI~KgelRig 43 (106)
T 2dmj_A 22 KSGRASCKKCSESIPKDSLRMA 43 (106)
T ss_dssp CSSCCBCSSSCCBCCTTCEEEE
T ss_pred CCCCCcchhhCCccCCCCEEEE
Confidence 4678999999999999999984
No 312
>2hfg_R Tumor necrosis factor receptor superfamily member; FAB fragment, TNFRSF, antibody-receptor complex, CRD, immune; 2.61A {Homo sapiens}
Probab=20.70 E-value=34 Score=19.86 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=9.5
Q ss_pred cccCccceecH
Q psy8140 58 STCAHLQCFDG 68 (108)
Q Consensus 58 ~~C~H~qCFDl 68 (108)
..|...||||-
T Consensus 14 t~C~q~eCfDP 24 (51)
T 2hfg_R 14 TPCNPAECFDP 24 (51)
T ss_dssp CCCCTTEEEET
T ss_pred cccCcccccCh
Confidence 57999999994
No 313
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=20.45 E-value=49 Score=19.39 Aligned_cols=16 Identities=13% Similarity=0.165 Sum_probs=8.1
Q ss_pred CceecccCCCcccCCC
Q psy8140 79 PKWNCPVCDKVGHLIL 94 (108)
Q Consensus 79 ~~W~CPiC~~~~~~~d 94 (108)
...+|+.|++.+...+
T Consensus 6 ~~~~C~~C~~~I~~~~ 21 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE 21 (81)
T ss_dssp --CBCSSSCCBCSSTT
T ss_pred CCCcCcCcCccccCce
Confidence 3456666666664333
No 314
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=20.44 E-value=32 Score=21.36 Aligned_cols=12 Identities=50% Similarity=1.099 Sum_probs=7.1
Q ss_pred CCCceecccCCC
Q psy8140 77 LKPKWNCPVCDK 88 (108)
Q Consensus 77 ~~~~W~CPiC~~ 88 (108)
+..+..||.|++
T Consensus 24 q~~ky~C~fCgk 35 (73)
T 1ffk_W 24 HKKKYKCPVCGF 35 (73)
T ss_pred cccCccCCCCCC
Confidence 344566666665
No 315
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=20.42 E-value=43 Score=21.30 Aligned_cols=15 Identities=20% Similarity=0.820 Sum_probs=11.1
Q ss_pred CCCceecccCCCccc
Q psy8140 77 LKPKWNCPVCDKVGH 91 (108)
Q Consensus 77 ~~~~W~CPiC~~~~~ 91 (108)
-.+.|.||.|...-.
T Consensus 60 P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 60 PGEEWSCSLCHVLPD 74 (88)
T ss_dssp CSSSCCCCSCCCCCS
T ss_pred cCCCcCCccccCCCc
Confidence 357899999986543
No 316
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.37 E-value=49 Score=16.86 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=11.1
Q ss_pred CCceecc--cCCCcccC
Q psy8140 78 KPKWNCP--VCDKVGHL 92 (108)
Q Consensus 78 ~~~W~CP--iC~~~~~~ 92 (108)
...++|+ .|++.+..
T Consensus 16 ~k~~~C~~~~C~k~F~~ 32 (47)
T 1ncs_A 16 DKTFECLFPGCTKTFKR 32 (47)
T ss_dssp TTEEECCCTTCCCEECS
T ss_pred CCCeECCCCCCCCccCC
Confidence 4569995 79998754
No 317
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.10 E-value=25 Score=20.50 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=10.6
Q ss_pred CceecccCCCcccCC
Q psy8140 79 PKWNCPVCDKVGHLI 93 (108)
Q Consensus 79 ~~W~CPiC~~~~~~~ 93 (108)
.-..||+|...+.++
T Consensus 9 ~iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 9 EILACPACHAPLEER 23 (56)
T ss_dssp TSCCCSSSCSCEEEE
T ss_pred hheeCCCCCCcceec
Confidence 456899999876543
Done!