RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8140
         (108 letters)



>gnl|CDD|111745 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger.  This domain has SUMO
          (small ubiquitin-like modifier) ligase activity and is
          involved in DNA repair and chromosome organisation.
          Length = 50

 Score = 69.6 bits (171), Expect = 1e-17
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 41 SLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDK 88
          SL CP+  +R++ P +   C H+QCFD  +F++ NE  P WNCPVCDK
Sbjct: 2  SLKCPISYLRISIPVRGRFCKHIQCFDLLSFLESNERTPTWNCPVCDK 49


>gnl|CDD|218222 pfam04710, Pellino, Pellino.  Pellino is involved in Toll-like
           signalling pathways, and associates with the kinase
           domain of the Pelle Ser/Thr kinase.
          Length = 416

 Score = 28.2 bits (63), Expect = 0.82
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 14/75 (18%)

Query: 44  CPLGKMRMAFPTKAST-------------CAHLQCFDGATFIKMNELKPKWNCPVCDKVG 90
           CP+G   +AFP+K+               C H+  +      +      +  CP+C  VG
Sbjct: 280 CPVGLNTLAFPSKSRATGETEKQPWVYLQCGHVHGYHDWGH-QEERGPRERECPLCRSVG 338

Query: 91  HLILLCMAMIESVCL 105
             + L M    +  +
Sbjct: 339 PYVPLWMGCEPAFYV 353


>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 415

 Score = 27.3 bits (60), Expect = 1.8
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 54  PTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDK 88
           P +       +C D     +  E K  W CP C +
Sbjct: 258 PYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGR 292


>gnl|CDD|221878 pfam12974, Phosphonate-bd, ABC transporter, phosphonate,
           periplasmic substrate-binding protein.  This is a family
           of periplasmic proteins which are part of the transport
           system for alkylphosphonate uptake.
          Length = 242

 Score = 26.8 bits (60), Expect = 2.0
 Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 7/34 (20%)

Query: 30  DSEIKTLELTSSLICPLGKMRMAFPTKASTCAHL 63
           DS IK+LE        L     AF    ST  +L
Sbjct: 94  DSPIKSLE-------DLKGKTFAFGDPNSTSGYL 120


>gnl|CDD|227547 COG5222, COG5222, Uncharacterized conserved protein, contains RING
           Zn-finger [General function prediction only].
          Length = 427

 Score = 27.0 bits (59), Expect = 2.0
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 22  KEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKW 81
            +      D   K      SL CPL    +  P K   C H  C +    I    L   +
Sbjct: 255 TKAVAEIPDQVYKMQPPNISLKCPLCHCLLRNPMKTPCCGHTFCDEC---IGTALLDSDF 311

Query: 82  NCPVCDKVGHLI 93
            CP C +   L+
Sbjct: 312 KCPNCSRKDVLL 323


>gnl|CDD|235270 PRK04286, PRK04286, hypothetical protein; Provisional.
          Length = 298

 Score = 26.5 bits (59), Expect = 2.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 10  HLMRDIAFSRYIKEKYNSENDSEIKTL 36
           HL+RD  +   +KE Y    D  ++ L
Sbjct: 248 HLLRDKNYREKLKELYERAEDRGVRVL 274


>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit.
          Nse1 and Nse2 are novel non-SMC subunits of the fission
          yeast Smc5-6 DNA repair complex. This family is the
          zinc-finger domain similar to the MIZ type of
          zinc-finger.
          Length = 57

 Score = 24.1 bits (53), Expect = 5.8
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 32 EIKTLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPV 85
          E+     T SL CPL       P  +  C H+  F+    + M        CPV
Sbjct: 2  ELVVEGGTISLTCPLTLQPFEEPVTSKKCNHV--FEKDAILSMLRRNKTVKCPV 53


>gnl|CDD|236859 PRK11143, glpQ, glycerophosphodiester phosphodiesterase;
           Provisional.
          Length = 355

 Score = 25.4 bits (56), Expect = 6.5
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 3/30 (10%)

Query: 55  TKASTCAHLQCFDGATF--IKMNELKPKWN 82
           T      +LQCFD      IK NEL+PK  
Sbjct: 195 TGKDDKVYLQCFDANELKRIK-NELEPKMG 223


>gnl|CDD|233662 TIGR01973, NuoG, NADH-quinone oxidoreductase, chain G.  This model
           represents the G subunit (one of 14: A->N) of the
           NADH-quinone oxidoreductase complex I which generally
           couples NADH and ubiquinone oxidation/reduction in
           bacteria and mammalian mitochondria while translocating
           protons, but may act on NADPH and/or plastoquinone in
           cyanobacteria and plant chloroplasts. This model
           excludes related subunits from formate dehydrogenase
           complexes [Energy metabolism, Electron transport].
          Length = 603

 Score = 25.0 bits (55), Expect = 9.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 83  CPVCDKVGHLILLCMAMI 100
           CP+CD+ G   L   A++
Sbjct: 96  CPICDQGGECDLQDQAVM 113


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.328    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,021,697
Number of extensions: 380992
Number of successful extensions: 476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 475
Number of HSP's successfully gapped: 21
Length of query: 108
Length of database: 10,937,602
Length adjustment: 73
Effective length of query: 35
Effective length of database: 7,699,760
Effective search space: 269491600
Effective search space used: 269491600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)