RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8140
         (108 letters)



>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
           E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
           {Saccharomyces cerevisiae}
          Length = 371

 Score = 89.6 bits (221), Expect = 7e-23
 Identities = 25/70 (35%), Positives = 35/70 (50%)

Query: 19  RYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELK 78
            Y+K+    + +  + T     SL CP+   RM +P+K+  C HLQCFD   F+      
Sbjct: 227 LYLKKTLREDEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQI 286

Query: 79  PKWNCPVCDK 88
           P W CPVC  
Sbjct: 287 PTWQCPVCQI 296


>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
           domain, structural GE consortium, SGC; 2.39A {Homo
           sapiens} PDB: 2asq_B
          Length = 360

 Score = 88.1 bits (217), Expect = 3e-22
 Identities = 42/70 (60%), Positives = 50/70 (71%)

Query: 19  RYIKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELK 78
             IKEK  ++ DSEI T  L  SL+CPLGKMR+  P +A TC HLQCFD A +++MNE K
Sbjct: 193 ALIKEKLTADPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKK 252

Query: 79  PKWNCPVCDK 88
           P W CPVCDK
Sbjct: 253 PTWICPVCDK 262


>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
           ATP-binding, chromosomal protein, coiled coil, DNA
           damage; 2.31A {Saccharomyces cerevisiae}
          Length = 267

 Score = 55.7 bits (133), Expect = 8e-11
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 21  IKEKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPK 80
           I +  N  ++ +++       L CP+       P  +  C H   FD        +    
Sbjct: 161 IPDLQNPADEDDLQIEGGKIELTCPITCKPYEAPLISRKCNH--VFDRDGIQNYLQGYTT 218

Query: 81  WNCPV--CDK 88
            +CP   C +
Sbjct: 219 RDCPQAACSQ 228


>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
          NPPSFA, national project on protein structural and
          functional analyses; NMR {Homo sapiens}
          Length = 94

 Score = 31.5 bits (71), Expect = 0.013
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 39 TSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKM----NELKPKWNCPV 85
          +S   CP+ K  M  P K   C H   ++    ++M     + K K  CP 
Sbjct: 5  SSGFTCPITKEEMKKPVKNKVCGH--TYEEDAIVRMIESRQKRKKKAYCPQ 53


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.9 bits (66), Expect = 0.11
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 15/39 (38%)

Query: 23 EKYNSENDSEIKTLELTSSLICPLGKMRMAFPTKASTCA 61
          EK        +K L+  +SL     K+  A    A   A
Sbjct: 18 EK------QALKKLQ--ASL-----KL-YA-DDSAPALA 41


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.7 bits (63), Expect = 0.43
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 5   VSLIAHLMRDIA-----FSRYIKEKYNSENDSEIKTLE 37
           +S+IA  +RD       +     +K  +  +S +  LE
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367


>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
           structural genomics, protein structure initiative; 2.20A
           {Thermoplasma acidophilum}
          Length = 290

 Score = 24.9 bits (55), Expect = 6.7
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 14/57 (24%)

Query: 1   MGSIVSLIAHL-----MRDIAFSRYIKEKYNSENDSEIKTL-ELTS-----SLICPL 46
            G I   +AHL     MR IA++R   ++     D   ++  +L        +  PL
Sbjct: 130 YGGIGRRVAHLAKAFGMRVIAYTRSSVDQ---NVDVISESPADLFRQSDFVLIAIPL 183


>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
           heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
           PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
          Length = 640

 Score = 24.7 bits (53), Expect = 8.9
 Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 6/62 (9%)

Query: 35  TLELTSSLICPLGKMRMAFPTKASTCAHLQCFDGATFIKMNELKPKWNCPVCDKVGHLIL 94
            LE    L   + + R  F  K               +      P  NC VC     + +
Sbjct: 399 VLEGLKILSGKIDQCRTIFLNKQPN------PRKKLLVPCALDPPNPNCYVCASKPEVTV 452

Query: 95  LC 96
             
Sbjct: 453 RL 454


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0436    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,505,901
Number of extensions: 70987
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 30
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.2 bits)