RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8140
         (108 letters)



>d1p90a_ c.55.5.2 (A:) NafY core domain {Azotobacter vinelandii
          [TaxId: 354]}
          Length = 123

 Score = 23.1 bits (49), Expect = 8.0
 Identities = 4/12 (33%), Positives = 7/12 (58%)

Query: 45 PLGKMRMAFPTK 56
          P G +R+A  + 
Sbjct: 4  PEGSIRVAIASN 15


>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
          {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 37

 Score = 21.6 bits (46), Expect = 9.2
 Identities = 5/11 (45%), Positives = 8/11 (72%)

Query: 76 ELKPKWNCPVC 86
          E+K  + CP+C
Sbjct: 1  EIKKVYICPIC 11


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 377,220
Number of extensions: 14303
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 14
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (21.9 bits)