BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8141
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A3L|A Chain A, X-Ray Structure Of Adenosine 5'-Monophosphate Deaminase
From Arabidopsis Thaliana In Complex With Coformycin
5'-Phosphate
Length = 701
Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust.
Identities = 206/451 (45%), Positives = 257/451 (56%), Gaps = 80/451 (17%)
Query: 14 VHEDKKTIADTDKHFKPSDNDSSTDQVAPLW-------QYKTISDLSNQKSEVAADLEES 66
VH DK T DK F N ++ ++ Q + + +++ Q V +DLE S
Sbjct: 312 VHADKSTFHRFDK-FNLKYNPCGQSRLREIFLKQDNLIQGRFLGEITKQ---VFSDLEAS 367
Query: 67 KYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLINNFQE 126
KYQ AE R+SIYG+ EWD+LA+W + +++YS N+ WLIQ+PRLY+I+K ++ +FQ
Sbjct: 368 KYQMAEYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQLPRLYNIYKDMGIVTSFQN 427
Query: 127 ILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFDADVLTPPQWNLEE 186
IL NIF PLFE T D SHP LH FL+ V+GFD VDDESKPE + TP QW
Sbjct: 428 ILDNIFIPLFEATVDPDSHPQLHVFLKQVVGFDLVDDESKPERRP-TKHMPTPAQWTNAF 486
Query: 187 NPCXXXXXXXXXXNLTVLNHFRRARDLNTFVLRPHCGEAGPIQHLVCGFMMAENISHGLL 246
NP NL VLN R ++ + T LRPH GEAG I HL F+ +I+HG+
Sbjct: 487 NPAFSYYVYYCYANLYVLNKLRESKGMTTITLRPHSGEAGDIDHLAATFLTCHSIAHGIN 546
Query: 247 LRKAPVLQYLYYLAQIGTIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIGIAMSPL 306
LRK+PVLQYLYYLA QIG+AMSPL
Sbjct: 547 LRKSPVLQYLYYLA-------------------------------------QIGLAMSPL 569
Query: 307 SNNSLFLNYHRNPLPEYLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTD 366
SNNSLFL+YHRNP P + FL RGL VSLSTD
Sbjct: 570 SNNSLFLDYHRNPFPVF-------------------FL------------RGLNVSLSTD 598
Query: 367 DPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPHGMKQYWLGPNYTKEG 426
DPLQ H TKEPL+EEYSIAA VWKLS+CD+CE+ARNSV SGF H +K +W+G +Y K G
Sbjct: 599 DPLQIHLTKEPLVEEYSIAASVWKLSACDLCEIARNSVYQSGFSHALKSHWIGKDYYKRG 658
Query: 427 VAGNDITRTNVPDIRVAFRSETMIEELSNIF 457
GNDI +TNVP IRV FR EE+ ++
Sbjct: 659 PDGNDIHKTNVPHIRVEFRDTIWKEEMQQVY 689
>pdb|3RYS|A Chain A, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
pdb|3RYS|B Chain B, The Crystal Structure Of Adenine Deaminase (Aaur1117) From
Arthrobacter Aurescens
Length = 343
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 330 VRIAMSPLSNNSLFL--NYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQ 387
V + + PLSN L +PLPE LA GL V +++DDP F + E+ +
Sbjct: 242 VPLTVCPLSNVRLRAVDKLADHPLPEMLAIGLNVCVNSDDPAYFGGYVDDNFEQL---VK 298
Query: 388 VWKLSSCDMCELARNSVLMS 407
V + S + LA NS+ S
Sbjct: 299 VLEFSVPEQATLAANSIRSS 318
>pdb|3L9B|A Chain A, Crystal Structure Of Rat Otoferlin C2a
Length = 144
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 40 VAPLWQYKTISDLSNQKSEVAADLEESKYQNAELRLSIYGKSED--EWDKLATWAIESNV 97
+A + KT+S+L + +A + ++ + ED ++D+ W + S++
Sbjct: 21 MALIVHLKTVSELRGRADRIA----KVTFRGQSFYSRVLENCEDVADFDETFRWPVASSI 76
Query: 98 YSNNIRWLIQIPRLYDIFKSNKLINNFQEILQNIFK 133
N + IQI +F SNKLI F+ +LQ + +
Sbjct: 77 DRNEV-LEIQIFNYSKVF-SNKLIGTFRMVLQKVVE 110
>pdb|3OU8|A Chain A, The Crystal Structure Of Adenosine Deaminase From
Pseudomonas Aeruginosa
pdb|3OU8|B Chain B, The Crystal Structure Of Adenosine Deaminase From
Pseudomonas Aeruginosa
pdb|3PAN|A Chain A, The Crystal Structure Of Adenosine Deaminase With
Hypoxanthine Bound From Pseudomonas Aeruginosa
pdb|3PAN|B Chain B, The Crystal Structure Of Adenosine Deaminase With
Hypoxanthine Bound From Pseudomonas Aeruginosa
pdb|3PAO|A Chain A, The Crystal Structure Of Adenosine Deaminase With Adenine
Bound From Pseudomonas Aeruginosa
pdb|3PAO|B Chain B, The Crystal Structure Of Adenosine Deaminase With Adenine
Bound From Pseudomonas Aeruginosa
pdb|3PBM|A Chain A, The Crystal Structure Of Adenosine Deaminase In Complex
With Chloropurine From Pseudomonas Aeruginosa
pdb|3PBM|B Chain B, The Crystal Structure Of Adenosine Deaminase In Complex
With Chloropurine From Pseudomonas Aeruginosa
Length = 326
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 322 EYLARGLV---VRIAMSPLSNNSL--FLNYHRNPLPEYLARGLVVSLSTDDPLQF 371
E L R L+ + + + PLSN L F + ++ + + L RG+ V++++DDP F
Sbjct: 228 ERLXRRLIDEQIPLTVCPLSNTKLCVFDDXSQHTILDXLERGVKVTVNSDDPAYF 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,356,346
Number of Sequences: 62578
Number of extensions: 584506
Number of successful extensions: 1158
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 6
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)