RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8141
(480 letters)
>gnl|CDD|238644 cd01319, AMPD, AMP deaminase (AMPD) catalyzes the hydrolytic
deamination of adensosine monophosphate (AMP) at
position 6 of the adenine nucleotide ring. AMPD is a
diverse and highly regulated eukaryotic key enzyme of
the adenylate catabolic pathway.
Length = 496
Score = 572 bits (1475), Expect = 0.0
Identities = 234/396 (59%), Positives = 272/396 (68%), Gaps = 69/396 (17%)
Query: 58 EVAADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKS 117
EV +DLEESKYQ+AE RLSIYG+S+DEWDKLA+W ++++++S N+RWLIQIPRLYD++K
Sbjct: 170 EVFSDLEESKYQHAEYRLSIYGRSKDEWDKLASWVVDNDLFSPNVRWLIQIPRLYDVYKK 229
Query: 118 NKLINNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFDADVL 177
+ ++N+FQE+L+NIF+PLFE T D SSHP LH FLQ VIGFDSVDDESK E F
Sbjct: 230 SGIVNSFQEMLENIFEPLFEATKDPSSHPELHVFLQQVIGFDSVDDESKSE-RRFTRKFP 288
Query: 178 TPPQWNLEENPCYAYYQYYTYANLTVLNHFRRARDLNTFVLRPHCGEAGPIQHLVCGFMM 237
P +W EENP Y+YY YY YAN+T LN FR+AR NTFVLRPHCGEAG
Sbjct: 289 KPEEWTSEENPPYSYYLYYMYANITTLNSFRKARGFNTFVLRPHCGEAGD---------- 338
Query: 238 AENISHGLLLRKAPVLQYLYYLAQIGTIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLA 297
I HL F++A ISHG+ LRK PVLQYLYYL
Sbjct: 339 ---------------------------IDHLASAFLLAHGISHGINLRKVPVLQYLYYLT 371
Query: 298 QIGIAMSPLSNNSLFLNYHRNPLPEYLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLAR 357
QIGIAMSP LSNNSLFL+Y +NP PE+ R
Sbjct: 372 QIGIAMSP-------------------------------LSNNSLFLSYEKNPFPEFFKR 400
Query: 358 GLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPHGMKQYW 417
GL VSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLS+CDMCELARNSVL SGF H +K++W
Sbjct: 401 GLNVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSTCDMCELARNSVLQSGFEHSIKRHW 460
Query: 418 LGPNYTKEGVAGNDITRTNVPDIRVAFRSETMIEEL 453
LGPNY K GVAGNDI RTNVP IR+A+R ET+ EEL
Sbjct: 461 LGPNYLKRGVAGNDIRRTNVPQIRMAYRYETLCEEL 496
>gnl|CDD|233409 TIGR01429, AMP_deaminase, AMP deaminase. This model describes AMP
deaminase, a large, well-conserved eukaryotic protein
involved in energy metabolism. Most members of the
family have an additional, poorly alignable region of
150 amino acids or more N-terminal to the region
included in the model.
Length = 611
Score = 524 bits (1350), Expect = 0.0
Identities = 230/399 (57%), Positives = 269/399 (67%), Gaps = 68/399 (17%)
Query: 58 EVAADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKS 117
EV DLE+SKYQ AE RLSIYG+S EWD LA W I+ +V+S N+RWLIQ+PRLYD+++S
Sbjct: 281 EVFTDLEDSKYQYAEPRLSIYGRSPKEWDSLARWIIDHDVFSPNVRWLIQVPRLYDVYRS 340
Query: 118 NKLINNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFDADVL 177
KL+ NF ++L+N+F PLFEVT D SSHP LH FLQ V GFDSVDDESK E+ +F
Sbjct: 341 KKLVPNFGDMLENVFLPLFEVTKDPSSHPELHLFLQQVTGFDSVDDESKHEDHMFSRKFP 400
Query: 178 TPPQWNLEENPCYAYYQYYTYANLTVLNHFRRARDLNTFVLRPHCGEAGPIQHLVCGFMM 237
+P +W E+NP Y+YY YY YAN+ VLN+FRR R LNTF+LRPHCGEA
Sbjct: 401 SPDEWTSEQNPPYSYYLYYMYANIMVLNNFRRERGLNTFLLRPHCGEA------------ 448
Query: 238 AENISHGLLLRKAPVLQYLYYLAQIGTIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLA 297
G++ HLV F+ + I+HG+LLRK PVLQYLYYL
Sbjct: 449 -------------------------GSVDHLVSAFLTSHGINHGILLRKVPVLQYLYYLT 483
Query: 298 QIGIAMSPLSNNSLFLNYHRNPLPEYLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLAR 357
QI IAMSP LSNNSLFL Y +NPLPEYL +
Sbjct: 484 QIPIAMSP-------------------------------LSNNSLFLEYSKNPLPEYLHK 512
Query: 358 GLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPHGMKQYW 417
GL VSLSTDDPLQFH+TKE LMEEY+IAAQVWKLS+CDMCELARNSVL SGF H +KQ+W
Sbjct: 513 GLNVSLSTDDPLQFHYTKEALMEEYAIAAQVWKLSTCDMCELARNSVLQSGFEHQVKQHW 572
Query: 418 LGPNYTKEGVAGNDITRTNVPDIRVAFRSETMIEELSNI 456
LGPNY KEG GNDI RTNVPDIRVAFR ET+ ELS +
Sbjct: 573 LGPNYYKEGPEGNDIRRTNVPDIRVAFRYETLCNELSLL 611
>gnl|CDD|178613 PLN03055, PLN03055, AMP deaminase; Provisional.
Length = 602
Score = 467 bits (1203), Expect = e-160
Identities = 212/402 (52%), Positives = 255/402 (63%), Gaps = 71/402 (17%)
Query: 58 EVAADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKS 117
EV +DLE SKYQ AE R+SIYG+ + EWD+LA+W + + +YS N+ WLIQ+PRLY+++K
Sbjct: 260 EVFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNRLYSENVVWLIQLPRLYNVYKE 319
Query: 118 NKLINNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPE-NPLFDADV 176
++ +FQ+IL NIFKPLFEVT D SSHP LH FL+ V+GFD VDDESKPE P +
Sbjct: 320 MGIVQSFQQILDNIFKPLFEVTVDPSSHPQLHVFLKMVVGFDMVDDESKPERRP--TKHM 377
Query: 177 LTPPQWNLEENPCYAYYQYYTYANLTVLNHFRRARDLNTFVLRPHCGEAGPIQHLVCGFM 236
TP QW++ NP Y+Y+ YY YANL LN R ++ LNT RPH GEA
Sbjct: 378 QTPEQWDIPFNPAYSYWAYYVYANLYTLNKLRESKGLNTIKFRPHAGEA----------- 426
Query: 237 MAENISHGLLLRKAPVLQYLYYLAQIGTIQHLVCGFMMAENISHGLLLRKAPVLQYLYYL 296
G I HL F++A NI+HG LRK+P LQYLYYL
Sbjct: 427 --------------------------GDIDHLAAAFLLAHNIAHGNNLRKSPGLQYLYYL 460
Query: 297 AQIGIAMSPLSNNSLFLNYHRNPLPEYLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLA 356
AQIG+AMSPL SNNSLFL+YHRNP P + A
Sbjct: 461 AQIGLAMSPL-------------------------------SNNSLFLDYHRNPFPMFFA 489
Query: 357 RGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPHGMKQY 416
RGL VSLSTDDPLQ H TKEPL+EEYSIAAQVWKLSSCD+CE+ARNSVL SGFPH K++
Sbjct: 490 RGLNVSLSTDDPLQIHLTKEPLVEEYSIAAQVWKLSSCDLCEIARNSVLQSGFPHASKKH 549
Query: 417 WLGPNYTKEGVAGNDITRTNVPDIRVAFRSETMIEELSNIFR 458
W+G NY G AGNDI +TNVP +RV FR E EEL +F
Sbjct: 550 WVGDNYWLRGPAGNDIHKTNVPHMRVEFRHEVWKEELQYVFL 591
>gnl|CDD|215411 PLN02768, PLN02768, AMP deaminase.
Length = 835
Score = 452 bits (1164), Expect = e-151
Identities = 216/460 (46%), Positives = 263/460 (57%), Gaps = 98/460 (21%)
Query: 14 VHEDKKTIADTDKH---------------FKPSDNDSSTDQVAPLWQYKTISDLSNQKSE 58
VH DK T DK F DN L Q + +++L+ Q
Sbjct: 446 VHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDN---------LIQGRFLAELTKQ--- 493
Query: 59 VAADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSN 118
V +DLE SKYQ AE R+SIYG+ + EWD+LA+W + + +YS N+ WLIQ+PRLY+++K
Sbjct: 494 VFSDLEASKYQMAEYRISIYGRKQSEWDQLASWIVNNELYSENVVWLIQLPRLYNVYKEM 553
Query: 119 KLINNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPE-NPLFDADVL 177
++ +FQ IL NIF PLFEVT D SHP LH FL+ V+G D VDDESKPE P +
Sbjct: 554 GIVTSFQNILDNIFIPLFEVTVDPDSHPQLHVFLKQVVGLDLVDDESKPERRP--TKHMP 611
Query: 178 TPPQWNLEENPCYAYYQYYTYANLTVLNHFRRARDLNTFVLRPHCGEAGPIQHLVCGFMM 237
TP QW NP ++YY YY YANL LN R ++ + T RPH GEAG I HL F+
Sbjct: 612 TPAQWTNVFNPAFSYYVYYCYANLYTLNKLRESKGMTTIKFRPHSGEAGDIDHLAATFLT 671
Query: 238 AENISHGLLLRKAPVLQYLYYLAQIGTIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLA 297
H NI+HG+ LRK+PVLQYLYYLA
Sbjct: 672 ----CH---------------------------------NIAHGINLRKSPVLQYLYYLA 694
Query: 298 QIGIAMSPLSNNSLFLNYHRNPLPEYLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLAR 357
QIG+AMSPLSNNSLFL+YHRNP P + FL R
Sbjct: 695 QIGLAMSPLSNNSLFLDYHRNPFPMF-------------------FL------------R 723
Query: 358 GLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPHGMKQYW 417
GL VSLSTDDPLQ H TKEPL+EEYSIAA VWKLSSCD+CE+ARNSV SGF H +K +W
Sbjct: 724 GLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSSCDLCEIARNSVYQSGFSHALKSHW 783
Query: 418 LGPNYTKEGVAGNDITRTNVPDIRVAFRSETMIEELSNIF 457
+G Y K G GNDI +TNVP IRV FR EE+ ++
Sbjct: 784 IGKEYYKRGPDGNDIHKTNVPHIRVEFRDTIWKEEMQQVY 823
>gnl|CDD|240354 PTZ00310, PTZ00310, AMP deaminase; Provisional.
Length = 1453
Score = 381 bits (979), Expect = e-119
Identities = 167/390 (42%), Positives = 216/390 (55%), Gaps = 71/390 (18%)
Query: 64 EESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKSNKLINN 123
++ AE RLSIYG + EWD LA W + S + +W+IQ+PR+Y +F++ +I +
Sbjct: 961 SRDRFTYAENRLSIYGINVKEWDDLAHWFDTHGMASKHNKWMIQVPRVYKVFRAQNVIGS 1020
Query: 124 FQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFDADVLTPPQWN 183
F + L NIF+PL+E + S HP H FL +V GFDSVD+E+ + P D ++P W
Sbjct: 1021 FGQYLDNIFQPLWEASLHPSKHPKFHYFLNHVSGFDSVDNEATIDLPFTD---VSPWAWT 1077
Query: 184 LEENPCYAYYQYYTYANLTVLNHFRRARDLNTFVLRPHCGEAGPIQHLVCGFMMAENISH 243
ENP Y YY YY YAN+ LN FR +R +TF LRPHCGE+
Sbjct: 1078 SVENPPYNYYLYYLYANIRTLNEFRASRGFSTFALRPHCGES------------------ 1119
Query: 244 GLLLRKAPVLQYLYYLAQIGTIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIGIAM 303
G++ HL F+ A +I HG+ LR P +QYLYYLAQIG+ +
Sbjct: 1120 -------------------GSMDHLYGAFLCANSICHGINLRNDPPMQYLYYLAQIGLHV 1160
Query: 304 SPLSNNSLFLNYHRNPLPEYLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSL 363
SPLSNN+LFL +L NP P + RGL VSL
Sbjct: 1161 SPLSNNALFL--------AFL-----------------------ENPFPVFFHRGLNVSL 1189
Query: 364 STDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPHGMKQYWLGPNYT 423
STDDPL FH T+EPL+EEYSIAA+VW LS D+CE+ARNSVL SGF K+ +G +
Sbjct: 1190 STDDPLMFHQTQEPLIEEYSIAARVWGLSLNDLCEIARNSVLQSGFDAAFKRNAIGDRWY 1249
Query: 424 KEGVAGNDITRTNVPDIRVAFRSETMIEEL 453
GND RT++ DIRVAFR ET EL
Sbjct: 1250 LSSSLGNDSLRTHLSDIRVAFRFETYHTEL 1279
Score = 194 bits (494), Expect = 1e-53
Identities = 121/390 (31%), Positives = 164/390 (42%), Gaps = 77/390 (19%)
Query: 69 QNAELRLSIYGKSEDEWDKLATWAIESNV--YSNNIRWLIQI--PRLYDIFKSNKLINNF 124
Q E L +YG +E LA W +S N RW++ I L F+
Sbjct: 330 QATEYSLPLYGHHPEELTDLAEWVRRQGFGPFSRN-RWILAISFKELGP-FQVPSSCTTV 387
Query: 125 QEILQNIFKPLFEVT--NDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFDADVLTPPQW 182
Q+ L NIF PLF+ T + L V G + + + FD P Q
Sbjct: 388 QDQLDNIFLPLFKATLCPSDPQWSDVAWLLCQVGGL-QILTHAVVRSEDFDETAPDPDQV 446
Query: 183 NLEENPCYAYYQYYTYANLTVLNHFRRARDLNTFVLRPHCGEAGPIQHLVCGFMMAENIS 242
YY YY YANL VLN R+ + LNT LRP GE P
Sbjct: 447 PYTAKCSDLYYFYYVYANLAVLNSLRKRKGLNTLQLRP-SGEKAP--------------- 490
Query: 243 HGLLLRKAPVLQYLYYLAQIGTIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIGIA 302
L+ +++ + I+ + PVLQYL L ++G+
Sbjct: 491 ---------------------AYDQLISSYLLGDVITRATSIADYPVLQYLCGLHRVGLT 529
Query: 303 MSPLSNNSLFLNYHRNPLPEYLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVS 362
+SPL ++ A + Y +PLP++L R L VS
Sbjct: 530 VSPLRDH---------------ALSIT---------------AYFDHPLPKFLHRCLRVS 559
Query: 363 LSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPHGMKQYWLGPNY 422
+ST DPL FH +PL+EEY+ A +++ LS D ELARNSVL S FP +KQ WLG +
Sbjct: 560 ISTSDPLYFHHHSQPLIEEYATAMKLFSLSPLDTTELARNSVLNSSFPPEVKQQWLGERF 619
Query: 423 TKEGVAGNDITRTNVPDIRVAFRSETMIEE 452
GV GND R+ V + R+AFR E E
Sbjct: 620 QL-GVEGNDFERSGVTNYRLAFREEAWALE 648
>gnl|CDD|216216 pfam00962, A_deaminase, Adenosine/AMP deaminase.
Length = 328
Score = 254 bits (652), Expect = 3e-81
Identities = 112/387 (28%), Positives = 145/387 (37%), Gaps = 89/387 (22%)
Query: 46 YKTISDLSNQKSEVAADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWL 105
T+ L+ +K L E + +++Y K L I+ V +RW
Sbjct: 17 PDTLLRLAKRK---GIILPEKVDKEVGKLVTLYEKFRSLKLFLYDLEIDVLV----LRWT 69
Query: 106 IQIPRLYDIFKSNKLINNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDES 165
Q PR Y + + L+N F PLFE T D P LH L GFD + E
Sbjct: 70 AQDPRRYAYEAAEDFAADGVVYLENRFDPLFEATLDGQ-SPELHVVLAVKDGFDEGEREF 128
Query: 166 KPENPLFDADVL-TPPQWNLEENPCYAYYQYYTYANLTVLN------------HFRRARD 212
L + P +W E YY+ Y N+ + F A
Sbjct: 129 GIGARLILCKIRHKPEEWLEEIAELATYYRDYGVVNIDLAGDEIGEPLPDFLYAFAEAGK 188
Query: 213 LNTFVLRPHCGEAGPIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIGTIQHLVCGF 272
L PH GEAG Q +V F+
Sbjct: 189 -YGLHLTPHAGEAGGPQSVVDAFL-----------------------------------L 212
Query: 273 MMAENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFLNYHRNPLPEYLARGLVVRI 332
+ AE I HG+ L K PVL YL QI I + PLSN +L
Sbjct: 213 LGAERIGHGIRLAKDPVLLYLLAERQIPIEVCPLSNVAL--------------------- 251
Query: 333 AMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLS 392
L+Y ++PL + G+ VSLSTDDPLQF T L EEY+IAAQ + L
Sbjct: 252 --------GAVLDYAKHPLKTFFDAGVPVSLSTDDPLQFGAT---LSEEYTIAAQDFGLD 300
Query: 393 SCDMCELARNSVLMSGFPHGMKQYWLG 419
+ D+CELARNSV S K LG
Sbjct: 301 TEDLCELARNSVKSSFLSDDEKAALLG 327
>gnl|CDD|224729 COG1816, Add, Adenosine deaminase [Nucleotide transport and
metabolism].
Length = 345
Score = 186 bits (475), Expect = 7e-55
Identities = 88/362 (24%), Positives = 134/362 (37%), Gaps = 82/362 (22%)
Query: 58 EVAADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKS 117
E + ++ R + ++E+++ +LA +E N + I+ Y K
Sbjct: 56 EYNKFNDLQEFLEKYYRGASVLRTEEDFYRLAYEYLEDAAADNVVYAEIRFDP-YLHTKR 114
Query: 118 NKLINNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFDADVL 177
++ E L F+P D H L L +GF+S D+E + D V
Sbjct: 115 GLSVDTVVEGLIAGFRPA---ERDFGIHSKLIVCLLRHLGFESADEELELALRYRDKLVT 171
Query: 178 TPPQWNLEENPCYAYYQYYTYANLTVLNHFRRARDLNTFVLRPHCGEAGPIQHLVCGFMM 237
+ + Y + ++ F+ ARD N L H GEAG
Sbjct: 172 -----GVGLAGSESGYPPELF-----VSLFKLARD-NGLKLTIHAGEAGG---------- 210
Query: 238 AENISHGLLLRKAPVLQYLYYLAQIGTIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLA 297
E+I L L + AE I HG+ + P L Y
Sbjct: 211 PESIRDALDL-------------------------LGAERIGHGIRAIEDPELLYRLAER 245
Query: 298 QIGIAMSPLSNNSLFLNYHRNPLPEYLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLAR 357
QI + + PLSN L + + ++P +
Sbjct: 246 QIPLEVCPLSNIQL-----------------------------GVVPSLAKHPFKKLFDA 276
Query: 358 GLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPHGMKQYW 417
G+ VSL+TDDPL F PL+EEY +AAQ++ LS D+CELARN+V + K
Sbjct: 277 GVKVSLNTDDPLYFGT---PLIEEYLVAAQIYGLSREDLCELARNAVEAAFISEEEKAAL 333
Query: 418 LG 419
LG
Sbjct: 334 LG 335
>gnl|CDD|238250 cd00443, ADA_AMPD, Adenosine/AMP deaminase. Adenosine deaminases
(ADAs) are present in pro- and eukaryotic organisms and
catalyze the zinc dependent irreversible deamination of
adenosine nucleosides to inosine nucleosides and
ammonia. The eukaryotic AMP deaminase catalyzes a
similar reaction leading to the hydrolytic removal of an
amino group at the 6 position of the adenine nucleotide
ring, a branch point in the adenylate catabolic pathway.
Length = 305
Score = 165 bits (419), Expect = 3e-47
Identities = 95/368 (25%), Positives = 125/368 (33%), Gaps = 116/368 (31%)
Query: 58 EVAADLEESKYQNAELRLSIYGKS-EDEWDKLATWAIESNVYSNNIRWL--IQIPRLYDI 114
EV + E Q ELR + E K W + S +W I++ + +
Sbjct: 50 EVIEEFAEDNVQYLELRTTPRLLETEKGLTKEQYWLLVIEGISEAKQWFPPIKVRLILSV 109
Query: 115 FKSNKLINNFQEILQNIFKPLFEVTNDSSSHPHLHKFL-QYVIGFDSVDDESKPENPLFD 173
+ P + +S L KFL YV+G D V DESK ENPL
Sbjct: 110 DRRG---------------PYVQNYLVASEILELAKFLSNYVVGIDLVGDESKGENPL-- 152
Query: 174 ADVLTPPQWNLEENPCYAYYQYYTYANLTVLNHFRRARDLNTFVLRPHCGEAGPIQHLVC 233
+Y YY Y AR L L HCGE G + L+
Sbjct: 153 ----------------RDFYSYYEY-----------ARRLGLLGLTLHCGETGNREELLQ 185
Query: 234 GFMMAENISHGLLLRKAPVLQYLYYLAQIGTIQHLVCGFMMAENISHGLLLRKAPVLQYL 293
++ + I HG+ L K P L YL
Sbjct: 186 ALLLL------------------------------------PDRIGHGIFLLKHPELIYL 209
Query: 294 YYLAQIGIAMSPLSNNSLFLNYHRNPLPEYLARGLVVRIAMSPLSNNSLFLNYHRNPLPE 353
L I I + P SN L +Y ++P
Sbjct: 210 VKLRNIPIEVCPTSNVVLG---------------------TVQ--------SYEKHPFMR 240
Query: 354 YLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPHGM 413
+ GL VSLSTDDP F L EEYS+AA+ + L+ D+CEL RNSVL S
Sbjct: 241 FFKAGLPVSLSTDDPGIFGT---SLSEEYSLAAKTFGLTFEDLCELNRNSVLSSFAKDEE 297
Query: 414 KQYWLGPN 421
K+ L
Sbjct: 298 KKSLLEVL 305
>gnl|CDD|236480 PRK09358, PRK09358, adenosine deaminase; Provisional.
Length = 340
Score = 59.8 bits (146), Expect = 9e-10
Identities = 57/213 (26%), Positives = 78/213 (36%), Gaps = 90/213 (42%)
Query: 206 HFRRARDLNTFVLR--PHCGEAGPIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIG 263
F RARD LR H GEAG E+I +A
Sbjct: 187 AFDRARDAG---LRLTAHAGEAGG----------PESI------WEA------------- 214
Query: 264 TIQHLVCGFMMAENISHGL-------LLRKAPVLQYLYYLA--QIGIAMSPLSNNSLFLN 314
+ L G AE I HG+ L+ LA +I + + P SN
Sbjct: 215 -LDEL--G---AERIGHGVRAIEDPALMA---------RLADRRIPLEVCPTSN------ 253
Query: 315 YHRNPLPEYLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDPLQFHFT 374
+ G V +A H PL L G+ V+++TDDPL F T
Sbjct: 254 ---------VQTGAVPSLAE------------H--PLKTLLDAGVRVTINTDDPLVFGTT 290
Query: 375 KEPLMEEYSIAAQVWKLSSCDMCELARNSVLMS 407
L EEY A+ + LS D+ +LARN++ +
Sbjct: 291 ---LTEEYEALAEAFGLSDEDLAQLARNALEAA 320
>gnl|CDD|233410 TIGR01430, aden_deam, adenosine deaminase. This family includes
the experimentally verified adenosine deaminases of
mammals and E. coli. Other members of this family are
predicted also to be adenosine deaminase, an enzyme of
nucleotide degradation. This family is distantly related
to AMP deaminase.
Length = 324
Score = 51.2 bits (123), Expect = 5e-07
Identities = 46/201 (22%), Positives = 69/201 (34%), Gaps = 72/201 (35%)
Query: 206 HFRRARDLNTFVLRPHCGEAGPIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIGTI 265
F AR+L L H GE G + + + +
Sbjct: 177 AFAIARELG-LHLTVHAGELGGPESVR---------------------------EALDDL 208
Query: 266 QHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQ--IGIAMSPLSNNSLFLNYHRNPLPEY 323
A I HG+ + P + L LAQ I + + P SN L E+
Sbjct: 209 G--------ATRIGHGVRALEDP--ELLKRLAQENITLEVCPTSN---VALGVVKSLAEH 255
Query: 324 LARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYS 383
PL +L G+ V+L++DDP F L EEY
Sbjct: 256 --------------------------PLRRFLEAGVKVTLNSDDPAYFGSY---LTEEYE 286
Query: 384 IAAQVWKLSSCDMCELARNSV 404
IAA+ L+ ++ +LARN++
Sbjct: 287 IAAKHAGLTEEELKQLARNAL 307
>gnl|CDD|238645 cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc
dependent enzyme which catalyzes the irreversible
hydrolytic deamination of both adenosine, as well as
desoxyadenosine, to ammonia and inosine or
desoxyinosine, respectively. ADA plays an important role
in the purine pathway. Low, as well as high levels of
ADA activity have been linked to several diseases.
Length = 325
Score = 51.1 bits (123), Expect = 6e-07
Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 72/206 (34%)
Query: 204 LNHFRRARDLNTFVLRPHCGEAGPIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIG 263
+ F+RAR+ L H GEAG + + R A L L
Sbjct: 176 VRAFQRAREAG-LRLTAHAGEAGGPESV----------------RDA--LDLLG------ 210
Query: 264 TIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLA--QIGIAMSPLSNNSLFLNYHRNPLP 321
AE I HG+ + P L + LA I + + P SN
Sbjct: 211 -----------AERIGHGIRAIEDPEL--VKRLAERNIPLEVCPTSN------------- 244
Query: 322 EYLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEE 381
+ G V +A +PL E L G+ V+++TDDP F L +E
Sbjct: 245 --VQTGAVKSLA--------------EHPLRELLDAGVKVTINTDDPTVFGTY---LTDE 285
Query: 382 YSIAAQVWKLSSCDMCELARNSVLMS 407
Y + A+ + L+ ++ +LARN+V S
Sbjct: 286 YELLAEAFGLTEEELKKLARNAVEAS 311
>gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of
metallo-dependent hydrolases (also called amidohydrolase
superfamily) is a large group of proteins that show
conservation in their 3-dimensional fold (TIM barrel)
and in details of their active site. The vast majority
of the members have a conserved metal binding site,
involving four histidines and one aspartic acid residue.
In the common reaction mechanism, the metal ion (or
ions) deprotonate a water molecule for a nucleophilic
attack on the substrate. The family includes urease
alpha, adenosine deaminase, phosphotriesterase
dihydroorotases, allantoinases, hydantoinases, AMP-,
adenine and cytosine deaminases, imidazolonepropionase,
aryldialkylphosphatase, chlorohydrolases,
formylmethanofuran dehydrogenases and others.
Length = 275
Score = 47.7 bits (113), Expect = 6e-06
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 322 EYLARGLVVRIAMSPLSNNSLFLN-YHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLME 380
L + V + + PLSN L + L L G+ V+L TD P H L+
Sbjct: 189 LELLKEAGVSLEVCPLSNYLLGRDGEGAEALRRLLELGIRVTLGTDGP--PHPLGTDLLA 246
Query: 381 EYSIAAQVWKL--SSCDMCELA 400
+ +V +L S + LA
Sbjct: 247 LLRLLLKVLRLGLSLEEALRLA 268
>gnl|CDD|238646 cd01321, ADGF, Adenosine deaminase-related growth factors (ADGF), a
novel family of secreted growth-factors with sequence
similarty to adenosine deaminase.
Length = 345
Score = 38.4 bits (90), Expect = 0.006
Identities = 37/142 (26%), Positives = 51/142 (35%), Gaps = 36/142 (25%)
Query: 278 ISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFLNYHRNPLPEYLARGLVVRIAMSPL 337
I HG L K P+L L I I + P+SN L GLV +
Sbjct: 226 IGHGFALPKHPLLMDLVKKKNIAIEVCPISNQVL---------------GLVSDL----- 265
Query: 338 SNNSLFLNYHRN-PLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDM 396
RN P LARG+ V +S+DDP + L ++ A + +
Sbjct: 266 ----------RNHPAAALLARGVPVVISSDDPGFWGAK--GLSHDFYQAFMGLAPADAGL 313
Query: 397 C---ELARNSVLMSGFPHGMKQ 415
+LA NS+ S K
Sbjct: 314 RGLKQLAENSIRYSALSDQEKD 335
>gnl|CDD|232918 TIGR00321, dhys, deoxyhypusine synthase. Deoxyhypusine synthase is
responsible for the first step in creating hypusine.
Hypusine is a modified amino acid found in eukaryotes
and in archaea in their respective forms of initiation
factor 5A. Its presence is confirmed in archaeal genera
Pyrococcus (PMID:12761201), Sulfolobus, Halobacterium,
and Haloferax (PMID:10648545), but in an older report
was not detected in Methanococcus voltae (J Biol Chem
1987 Dec 5;262(34):16585-9). This family of apparent
orthologs has an unusual UPGMA difference tree, in which
the members from the archaea M. jannaschii and P.
horikoshii cluster with the known eukaryotic
deoxyhypusine synthases. Separated by a fairly deep
branch, although still strongly related, is a small
cluster of proteins from Methanobacterium
thermoautotrophicum and Archeoglobus fulgidus, the
latter of which has two [Protein fate, Protein
modification and repair].
Length = 301
Score = 31.6 bits (72), Expect = 0.75
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 108 IPRLYDIFKSNKLINNFQEILQNIFKPLFEVTNDSSSHPHLHKF 151
I R+ D+F N+ F+E L IF + + + +
Sbjct: 112 INRIGDVFVPNENFEVFEEWLVEIFSEMLGEQPIITPSEFIDEI 155
>gnl|CDD|217892 pfam04100, Vps53_N, Vps53-like, N-terminal. Vps53 complexes with
Vps52 and Vps54 to form a multi- subunit complex
involved in regulating membrane trafficking events.
Length = 375
Score = 31.3 bits (71), Expect = 1.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 104 WLIQIPRLYDIFKSNKLINNFQEILQNIFKPLFEV 138
WL +I R Y FK +L+ +F+E IF + V
Sbjct: 242 WLDKIDRRYAWFK--RLLRDFEEKYGPIFPADWHV 274
>gnl|CDD|238637 cd01312, Met_dep_hydrolase_D, Metallo-dependent hydrolases,
subgroup D is part of the superfamily of
metallo-dependent hydrolases, a large group of proteins
that show conservation in their 3-dimensional fold (TIM
barrel) and in details of their active site. The vast
majority of the members have a conserved metal binding
site, involving four histidines and one aspartic acid
residue. In the common reaction mechanism, the metal ion
(or ions) deprotonate a water molecule for a
nucleophilic attack on the substrate. The function of
this subgroup is unknown.
Length = 381
Score = 30.1 bits (68), Expect = 2.4
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 298 QIGIAMSPLSNNSLFLNYHRNPLPEYLARGLVVRIAMSPL-SNNSL--------FLNYHR 348
IA+ P SN LN + + E G+ V + L SN SL L+ H
Sbjct: 253 GASIALCPRSNR--LLNGGKLDVSELKKAGIPVSLGTDGLSSNISLSLLDELRALLDLHP 310
Query: 349 NPLPEYLARGLVVS 362
LA L++
Sbjct: 311 EEDLLELASELLLM 324
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 30.2 bits (69), Expect = 3.5
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 11/96 (11%)
Query: 93 IESNVYSNNIRWLIQI--PRL--YDIFKS--NKLINNFQEILQNIFKPLFEVTNDSSSHP 146
+ V + +W + P + + FK KL +F I EV N + +
Sbjct: 31 EKVVVDKKSKKWEFHLKFPNILPIEDFKLFKEKLKQSFSHIADIKVTFSIEVENITFTEE 90
Query: 147 HLHKFLQYVIGFDSVDDES-----KPENPLFDADVL 177
L + +I + K + + + L
Sbjct: 91 LLLDYWNEIIEKAKKNSPLFKSLLKKQKVEVEGNKL 126
>gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional.
Length = 430
Score = 29.7 bits (67), Expect = 3.6
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 330 VRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTD-----DPLQFHFTKEPLMEEYSI 384
V ++ +P+SN L P+P+ L RG+ VSL TD + L + EE
Sbjct: 263 VNVSHNPVSNMKLASGI--APVPKLLERGVNVSLGTDGCASNNNLD-------MFEEMKT 313
Query: 385 AAQVWKLSSCDMCELARNSVL 405
AA + K+++ D L VL
Sbjct: 314 AALLHKVNTMDPTALPARQVL 334
>gnl|CDD|236801 PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT;
Provisional.
Length = 343
Score = 29.5 bits (67), Expect = 3.8
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 14/38 (36%)
Query: 385 AAQVWKLSSCDMCELARNSVLMSGFPHGMKQYWLGPNY 422
A + WKL C L +PH YWL NY
Sbjct: 43 AKKAWKL-----CAL---------YPHLKDSYWLSVNY 66
>gnl|CDD|200579 cd10955, CE4_BH0857_like, Putative catalytic NodB homology domain
of uncharacterized BH0857 protein from Bacillus
halodurans and its bacterial homologs. This family is
represented by a putative polysaccharide deacetylase
BH0857 from Bacillus halodurans. Although its biological
function still remains unknown, BH0857 shows high
sequence homology to the catalytic NodB homology domain
of Streptococcus pneumoniae polysaccharide deacetylase
PgdA (SpPgdA), which is an extracellular metal-dependent
polysaccharide deacetylase with de-N-acetylase activity
toward a hexamer of chitooligosaccharide
N-acetylglucosamine, but not shorter
chitooligosaccharides or a synthetic peptidoglycan
tetrasaccharide. Both BH0857 and SpPgdA belong to the
carbohydrate esterase 4 (CE4) superfamily. This family
also includes many uncharacterized bacterial
polysaccharide deacetylases.
Length = 195
Score = 28.8 bits (65), Expect = 4.3
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 114 IFKSNKLIN-NFQEILQNIFKPLFEVTNDSSSHPHL 148
+F + + I+ N E + PLFE+ N HP L
Sbjct: 35 LFVTGRWIDRNPAEAKELAANPLFEIENHGYRHPPL 70
>gnl|CDD|112953 pfam04163, Tht1, Tht1-like nuclear fusion protein.
Length = 554
Score = 29.3 bits (65), Expect = 4.8
Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 20/133 (15%)
Query: 21 IADTDKHFKPSDNDSS--TDQVAPLWQYKTISDLSNQKSEVAADLEESKYQNAELRLSIY 78
I D F+ SD + + + + +S+ N + E + +E +L I+
Sbjct: 201 IDDFAGKFRNSDIELRFADENFRIILEIMDLSEFQNHQQEGKVNQDEILETIEQLESEIF 260
Query: 79 GKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKS---------NKLINNFQEILQ 129
+ A + ES N+I I L D F S L ++F L+
Sbjct: 261 DINS----FFANFIEESAGVHNHI-----IEDLADEFASENAIALSAIGDLKDDFLAFLE 311
Query: 130 NIFKPLFEVTNDS 142
+ K L E++ DS
Sbjct: 312 DRIKNLIEMSEDS 324
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 29.4 bits (67), Expect = 4.9
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 45 QYKTISDLSNQKSEVAADLEESKYQNAELRLSIYGKS--EDEWDKLAT---WAIESNVYS 99
Q K I + + ++EE + + +L+L K E E KL T + E+ V
Sbjct: 234 QLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIR 293
Query: 100 NNIRWLIQIPRLYDIFKSNKLINNFQEIL 128
N + WL+ +P K + ++IL
Sbjct: 294 NYLDWLLDLP-WGKRSKDKLDLKKAEKIL 321
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 29.6 bits (66), Expect = 4.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 430 NDITRTNVPDIRVAFRSETMIEELSNIFRVFKGNVDWKVSLLP 472
DI IR + T+++ LS +R +K N+ W V P
Sbjct: 719 ADILSMLPEGIRQT-KVRTILQHLSEAWRCWKANIPWHVPGEP 760
>gnl|CDD|224000 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit
(contains helicase and exonuclease domains) [DNA
replication, recombination, and repair].
Length = 1139
Score = 28.6 bits (64), Expect = 8.6
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 22/118 (18%)
Query: 73 LRLSIYGKSEDEWDKLA-------TWAIESNVYSNNIRWLIQIPRLYDIFKSNKLINNFQ 125
LR ++G +ED+ LA ++ R+ + + K L +
Sbjct: 619 LRSPLFGLTEDDLAALAQDEAEWEFLWENLRQLADIWRFRGVLAMWRALAKITPLHDLIA 678
Query: 126 EILQNIFKPLFEVTN---------------DSSSHPHLHKFLQYVIGFDSVDDESKPE 168
E L + ++TN S H L +++ ++ D+E
Sbjct: 679 ERLLSTNLGERDLTNGLHAQELLQELLTRALSYEHGLLRWLERFIALIENNDEEQARR 736
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.414
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,701,849
Number of extensions: 2407342
Number of successful extensions: 1897
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1860
Number of HSP's successfully gapped: 49
Length of query: 480
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 379
Effective length of database: 6,457,848
Effective search space: 2447524392
Effective search space used: 2447524392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)