RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8141
(480 letters)
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate
deaminase, COF 5'-phosphate, structural genomics; HET:
CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Length = 701
Score = 432 bits (1111), Expect = e-145
Identities = 199/401 (49%), Positives = 244/401 (60%), Gaps = 69/401 (17%)
Query: 58 EVAADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYSNNIRWLIQIPRLYDIFKS 117
+V +DLE SKYQ AE R+SIYG+ EWD+LA+W + +++YS N+ WLIQ+PRLY+I+K
Sbjct: 359 QVFSDLEASKYQMAEYRISIYGRKMSEWDQLASWIVNNDLYSENVVWLIQLPRLYNIYKD 418
Query: 118 NKLINNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKPENPLFDADVL 177
++ +FQ IL NIF PLFE T D SHP LH FL+ V+GFD VDDESKPE +
Sbjct: 419 MGIVTSFQNILDNIFIPLFEATVDPDSHPQLHVFLKQVVGFDLVDDESKPERR-PTKHMP 477
Query: 178 TPPQWNLEENPCYAYYQYYTYANLTVLNHFRRARDLNTFVLRPHCGEAGPIQHLVCGFMM 237
TP QW NP ++YY YY YANL VLN R ++ + T LRPH GEAG
Sbjct: 478 TPAQWTNAFNPAFSYYVYYCYANLYVLNKLRESKGMTTITLRPHSGEAGD---------- 527
Query: 238 AENISHGLLLRKAPVLQYLYYLAQIGTIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLA 297
I HL F+ +I+HG+ LRK+PVLQYLYYLA
Sbjct: 528 ---------------------------IDHLAATFLTCHSIAHGINLRKSPVLQYLYYLA 560
Query: 298 QIGIAMSPLSNNSLFLNYHRNPLPEYLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLAR 357
QIG+AMSPLS NNSLFL+YHRNP P + R
Sbjct: 561 QIGLAMSPLS-------------------------------NNSLFLDYHRNPFPVFFLR 589
Query: 358 GLVVSLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPHGMKQYW 417
GL VSLSTDDPLQ H TKEPL+EEYSIAA VWKLS+CD+CE+ARNSV SGF H +K +W
Sbjct: 590 GLNVSLSTDDPLQIHLTKEPLVEEYSIAASVWKLSACDLCEIARNSVYQSGFSHALKSHW 649
Query: 418 LGPNYTKEGVAGNDITRTNVPDIRVAFRSETMIEELSNIFR 458
+G +Y K G GNDI +TNVP IRV FR EE+ ++
Sbjct: 650 IGKDYYKRGPDGNDIHKTNVPHIRVEFRDTIWKEEMQQVYL 690
>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor
binding domains, glyco hydrolase, growth factor,
secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*
Length = 508
Score = 71.9 bits (176), Expect = 1e-13
Identities = 47/277 (16%), Positives = 69/277 (24%), Gaps = 96/277 (34%)
Query: 146 PHLHKFLQYVIGFDSVDDESKPENPLFDADVLTPPQWNLEENPCYAYYQYYTYANLTVLN 205
KF V GFD V E + L D
Sbjct: 284 GLRIKFPTVVAGFDLVGHEDTG-HSLHD-----------------------------YKE 313
Query: 206 HFRRARDLN-TFVLRPHCGEAGPIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIGT 264
H GE G + NI L+L
Sbjct: 314 ALMIPAKDGVKLPYFFHAGETDW-----QGTSIDRNILDALMLN---------------- 352
Query: 265 IQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFLNYHRNPLPEYL 324
I HG L K P ++ + I I + P+SN L
Sbjct: 353 ----------TTRIGHGFALSKHPAVRTYSWKKDIPIEVCPISNQVL------------- 389
Query: 325 ARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSI 384
L + +P+ +A G + +S+DDP F L ++
Sbjct: 390 ----------------KLVSDLRNHPVATLMATGHPMVISSDDPAMFGAK--GLSYDFYE 431
Query: 385 AAQVWKLSSCD---MCELARNSVLMSGFPHGMKQYWL 418
D + +LA NS+ S K ++
Sbjct: 432 VFMGIGGMKADLRTLKQLAMNSIKYSTLLESEKNTFM 468
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas
aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Length = 326
Score = 67.2 bits (165), Expect = 2e-12
Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 72/214 (33%)
Query: 206 HFRRARDLNTFVLRPHCGEAGPIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIGTI 265
F RAR F+ H GE GP E I +A +
Sbjct: 182 VFDRARSEG-FLTVAHAGEEGP----------PEYI------WEA--------------L 210
Query: 266 QHLVCGFMMAENISHGLLLRKAPVLQYLYYLA--QIGIAMSPLSNNSLFLNYHRNPLPEY 323
L E I HG+ + L + L QI + + PLSN
Sbjct: 211 DLL--K---VERIDHGVRAFEDERL--MRRLIDEQIPLTVCPLSN--------------- 248
Query: 324 LARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYS 383
+ ++ H + + L RG+ V++++DDP F + E +
Sbjct: 249 TKLCVFDDMSQ------------H--TILDMLERGVKVTVNSDDPAYFGGY---VTENFH 291
Query: 384 IAAQVWKLSSCDMCELARNSVLMSGFPHGMKQYW 417
Q ++ LA+NS+ G +
Sbjct: 292 ALQQSLGMTEEQARRLAQNSLDARLVKEGHHHHH 325
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A
{Arthrobacter aurescens}
Length = 343
Score = 66.8 bits (164), Expect = 3e-12
Identities = 46/215 (21%), Positives = 71/215 (33%), Gaps = 72/215 (33%)
Query: 206 HFRRARDLNTFVLRPHCGEAGPIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIGTI 265
++RA + H GE GP A I +A +
Sbjct: 185 LYQRAAEAG-LRRIAHAGEEGP----------ASYI------TEA--------------L 213
Query: 266 QHLVCGFMMAENISHGLLLRKAPVLQYLYYLA--QIGIAMSPLSNNSLFLNYHRNPLPEY 323
L E I HG+ + + + L Q+ + + PLSN
Sbjct: 214 DVL-----HVERIDHGIRCMEDTDV--VQRLVAEQVPLTVCPLSN--------------- 251
Query: 324 LARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYS 383
+ V ++A H PLPE LA GL V +++DDP F + + +
Sbjct: 252 VRLRAVDKLAD------------H--PLPEMLAIGLNVCVNSDDPAYFGGY---VDDNFE 294
Query: 384 IAAQVWKLSSCDMCELARNSVLMSGFPHGMKQYWL 418
+V + S + LA NS+ S K L
Sbjct: 295 QLVKVLEFSVPEQATLAANSIRSSFASDARKAVLL 329
>3iar_A Adenosine deaminase; purine metabolism structural genomics,
structural genomics consortium, SGC, D mutation,
hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A
{Homo sapiens} PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A*
1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A*
1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A*
3mvi_A 1a4l_A* ...
Length = 367
Score = 62.7 bits (153), Expect = 6e-11
Identities = 35/214 (16%), Positives = 55/214 (25%), Gaps = 72/214 (33%)
Query: 207 FRRARDLNTFVLRPHCGEAGPIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIGTIQ 266
++ A H GE G AE + ++A + L
Sbjct: 198 YQEAVKSG-IHRTVHAGEVGS----------AEVV------KEA--VDILK--------- 229
Query: 267 HLVCGFMMAENISHGLLLRKAPVLQYLYYLA--QIGIAMSPLSNNSLFLNYHRNPLPEYL 324
E + HG + L L + + P S+
Sbjct: 230 --------TERLGHGYHTLEDQAL--YNRLRQENMHFEICPWSS---------------Y 264
Query: 325 ARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEYSI 384
G H + SL+TDDPL F T L +Y +
Sbjct: 265 LTGAWKPDTE------------H--AVIRLKNDQANYSLNTDDPLIFKST---LDTDYQM 307
Query: 385 AAQVWKLSSCDMCELARNSVLMSGFPHGMKQYWL 418
+ + + L N+ S P K+ L
Sbjct: 308 TKRDMGFTEEEFKRLNINAAKSSFLPEDEKRELL 341
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 3e-10
Identities = 90/500 (18%), Positives = 154/500 (30%), Gaps = 188/500 (37%)
Query: 101 NIRWLIQIP-RLYDIFKSNKLINNFQEILQNIFKPL--FEVTNDSSSHPHLH-KFLQYVI 156
++ ++ +P + F +++L F +IL +P F ++ ++ L KFL YV
Sbjct: 15 SLEHVLLVPTASF--FIASQLQEQFNKILP---EPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 157 GFDSVDDESKPENPLFDADVLTPPQWNLEENPCYAYYQYYTYANLTVLNHFRRA----RD 212
V+ + FD VL L F D
Sbjct: 70 --SLVEPSKVGQ---FD-QVL-----------------------NLCLTEFENCYLEGND 100
Query: 213 LNTFVLRPHCGEAGPI---QHLVCGFMMAENISH--------GLLLRKAPV--------- 252
++ + + + L+ ++ A ++ L R
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 253 ------------LQYLY--YLAQIG--------TIQHLVCGFMMAENI-SHGLLLRKAPV 289
L+ LY Y +G T+ L+ + AE + + GL +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-----NI 215
Query: 290 LQYL---------YYLAQIGIAMSPLSNNSLFLNY-------HRNP--LPEYL------A 325
L++L YL I I+ PL +Y P L YL +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 326 RGLV--VRIAMSPLSNNSLFLN------------------YHRNPLP-----EYLARG-- 358
+GLV V IA + S S F++ Y LP + L
Sbjct: 275 QGLVTAVAIAETD-SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 359 -----LVVSLSTDDPLQFHFTKE----PLMEEYSIAAQVWKLSSCDMCEL---ARNSVLM 406
L +S T + +Q + K P ++ I+ L A+N V+
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-------------LVNGAKNLVV- 379
Query: 407 SGFPHGMKQYWLGPNYTKEGV-AGNDITRTNVP-------------DIRVAFRSETMIEE 452
SG P + Y L K +G D +R +P + F S ++
Sbjct: 380 SGPPQSL--YGLNLTLRKAKAPSGLDQSR--IPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 453 LSNIF-RVFKGNVDWKVSLL 471
I + K NV + +
Sbjct: 436 SDLINKDLVKNNVSFNAKDI 455
Score = 30.0 bits (67), Expect = 2.0
Identities = 29/200 (14%), Positives = 59/200 (29%), Gaps = 52/200 (26%)
Query: 303 MSPLSNNSLFLNY----HRNPLPEYL-ARGLVVR---IAMSPLSNNSLFLNYHRNPLPEY 354
M S L L++ H +P ++ + P + E
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 355 LAR--GLVVSL-------STDDPLQF---HFTKEPLMEE--YSIAAQVWKLSSCDMCELA 400
+ + G V SL D L F L +++AA++ L D +
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL--LQENDTTLVK 118
Query: 401 RNSVLMSGFPHGMKQYWLGPNYTKEGVAGNDITRTNVP---------DIRVA--F----R 445
++ K Y T +A + + + ++ F
Sbjct: 119 TKELI--------KNY-----ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 446 SETMIEELSNIFRVFKGNVD 465
++ EEL ++++ + V
Sbjct: 166 TDDYFEELRDLYQTYHVLVG 185
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural
genomics, medical ST genomics of pathogenic protozoa
consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium
vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Length = 371
Score = 58.8 bits (143), Expect = 1e-09
Identities = 32/216 (14%), Positives = 64/216 (29%), Gaps = 69/216 (31%)
Query: 205 NHFRRARDLNTFVLRPHCGEAGPIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIGT 264
F R+ L H GE + + + A
Sbjct: 219 EIFDYVRESG-VPLSVHAGEDVTLPN-------LNTL------YSA-------------- 250
Query: 265 IQHLVCGFMMAENISHGLLLRKAPVLQYLYYLA--QIGIAMSPLSNNSLFLNYHRNPLPE 322
IQ L E I HG+ + ++ L + + I + + P+SN + L
Sbjct: 251 IQVL-----KVERIGHGIRVAESQEL--IDMVKEKNILLEVCPISN--VLLK-------- 293
Query: 323 YLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDPLQFHFTKEPLMEEY 382
+ + +P+ + G+ VS+++DDP F + ++Y
Sbjct: 294 ------NAK-------------SMDTHPIRQLYDAGVKVSVNSDDPGMFLTN---INDDY 331
Query: 383 SIAAQVWKLSSCDMCELARNSVLMSGFPHGMKQYWL 418
+ D ++ ++ S +K
Sbjct: 332 EELYTHLNFTLEDFMKMNEWALEKSFMDSNIKDKIK 367
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.009
Identities = 64/449 (14%), Positives = 125/449 (27%), Gaps = 121/449 (26%)
Query: 108 IPRLYDIFKSNKLINNFQEILQNIFKPLFEVTNDSSSHPHLHKFLQYVIGFDSVDDESKP 167
+ D F N + Q++ ++I E + + F ++ SK
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMSKDAVSGTLRL--FWTL--LSKQ 75
Query: 168 ENPL--FDADVLTP------PQWNLEEN-PCYAYYQYYTYANLTVLNHFRRARDLNTFVL 218
E + F +VL E+ P Y + + N + N V
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYN--VS 132
Query: 219 RPHCGEAGPIQHLVCGFMMAENIS-HGLL-----------LRKAPVLQYL----YYLAQI 262
R ++ + A+N+ G+L V + ++L
Sbjct: 133 RLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-- 188
Query: 263 GTIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFLNYHRNPLPE 322
+ S +L LQ L Y QI + S++S + + +
Sbjct: 189 -----------LKNCNSPETVLEM---LQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 323 YL---------ARGLVV-----------------RI-----------AMSPLSNNSLFLN 345
L L+V +I +S + + L+
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 346 YHRNPLPEYLARGL---VVSLSTDD-PLQFHFTKEPL--------MEEYSIAAQVWKLSS 393
+H L + L + D P + T P + + WK +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 394 CDMCELARNSVLMSGFPHGMKQYWLGPNYTKEGVAGNDITRTNVPDIRVA--------FR 445
CD S L P ++ + + V ++P I ++
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKM-----FDRLSVFPPS---AHIPTILLSLIWFDVIKSD 403
Query: 446 SETMIEELSNIFRVFKGNVDWKVSLLPGL 474
++ +L V K + +S +P +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTIS-IPSI 431
Score = 32.9 bits (74), Expect = 0.28
Identities = 56/452 (12%), Positives = 112/452 (24%), Gaps = 182/452 (40%)
Query: 1 MDNVASLPHSTKIVHEDKKTIADTDKHFKP-------SDNDSSTDQVAPLWQYKTISDLS 53
+ NV ++ K F + TD ++ D
Sbjct: 250 LLNV-----------QNAKAW----NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 54 NQ---KSEV-----------AADLEESKYQNAELRLSIYGKSEDEWDKLATWAIESNVYS 99
+ EV DL RLSI +S + LATW
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG--LATW-------- 344
Query: 100 NNIRWLIQIPRLYDIFKSNKLINNFQEILQ-NIFKPLFEVTNDSSSHPHLHKFLQYVIGF 158
W + + K +I + +L+ ++ +F+ + +
Sbjct: 345 --DNW-----KHVNCDKLTTIIESSLNVLEPAEYRKMFD---------------RLSV-- 380
Query: 159 DSVDDESKPENPLFDADVLTPPQ-----W-NLEENPCYAYYQYYTYANLTVLNHFRR--- 209
F P W ++ ++ + V+N +
Sbjct: 381 -------------FPPSAHIPTILLSLIWFDVIKSDV-----------MVVVNKLHKYSL 416
Query: 210 -ARDLNTFVLRPHCGEAGPIQHLVCGFMMAENISHGLLLRKAPVLQYLYYLAQIGTIQH- 267
+ + I + L L+ Y L H
Sbjct: 417 VEKQPKESTIS---------------------I-PSIYLELKVKLENEYAL-------HR 447
Query: 268 -LVCGFMMAENISHGLLLRKAPVLQYLY----Y-LAQIGIAMSPLSNNSLFLNYHRNPLP 321
+V + + + L+ + QY Y + L I +FL++
Sbjct: 448 SIVDHYNIPKTFDSDDLI-PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR----- 501
Query: 322 EYLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDPLQF---HFTK-EP 377
+L + + R+ + A G +++ L+F + +P
Sbjct: 502 -FLEQKI-------------------RHDSTAWNASGSILNTLQQ--LKFYKPYICDNDP 539
Query: 378 LMEEY---------SIAAQVWKLSSCDMCELA 400
E I + D+ +A
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.2 bits (70), Expect = 0.51
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 15/50 (30%)
Query: 208 RRARDLNTFVLRPHCGEAGPIQHLV------------CGFMMAEN-ISHG 244
RR +LN + P C P +V CG ++++ +
Sbjct: 13 RRGPNLNIVLTCPECKVYPP--KIVERFSEGDVVCALCGLVLSDKLVDTR 60
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 1.9
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 44 WQYKTISDLSNQKSEVAADLEESKYQNAELRLSIYGKSE-DEWDKLATWAIESNVYSN 100
W+ + Q+ + SK E R K + +EW++ + +E N +N
Sbjct: 90 WREE-------QRKRLQELDAASKVMEQEWREK--AKKDLEEWNQRQSEQVEKNKINN 138
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 2.5
Identities = 32/224 (14%), Positives = 59/224 (26%), Gaps = 45/224 (20%)
Query: 270 CGFMMAENISHGLLL---------RKAPVLQYLYYLAQIGIAMSPLSNNSLFLNYHRN-P 319
GFM A+ G+ + P+ Y A + R+ P
Sbjct: 1175 NGFMEAQ--GAGIQIIMQADLALKMGVPI-----YGIVAMAATATDK-------IGRSVP 1220
Query: 320 LPEYLARGLVVRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTDDP--LQFHFTKEP 377
P R S + S LN + ++ L+ + P
Sbjct: 1221 APGKGILT-TAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIP 1279
Query: 378 L---MEEYSI-AAQVWKLSSCDMCELARNSVLMSGFPHGMKQYWLGPNYTKEGVAGNDI- 432
E ++ + + A+ + + L G+ +D+
Sbjct: 1280 SEDQNEFLLERTREIHNEAESQLRA-AQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLG 1338
Query: 433 ------TRTNVPDIRVAFRSETM-IEELSNIFRVFKGNVDWKVS 469
T T D ++E+ I E+ +GN V
Sbjct: 1339 VASFHGTSTKAND-----KNESATINEMMKHLGRSEGNPVIGVF 1377
>4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A
{Homo sapiens} PDB: 2uz9_A* 3e0l_A
Length = 476
Score = 28.9 bits (65), Expect = 4.5
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 330 VRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTD 366
IA P SN L L+ + E L + + L TD
Sbjct: 318 ASIAHCPNSN--LSLSSGFLNVLEVLKHEVKIGLGTD 352
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan,
membrane-associated proteins; 1.90A {Xanthomonas
campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Length = 406
Score = 28.5 bits (63), Expect = 5.3
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 283 LLRKAPVLQYLYYLAQIGIAMSPLSNNSLFLNYHRNP--LPEYLARGL-VV 330
+ + Q + Y+ ++P ++ + + + L +Y GL V
Sbjct: 269 VYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAV 319
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural
genomics, protein structure initiative; 1.78A
{Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16
Length = 420
Score = 28.1 bits (63), Expect = 6.2
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 15/77 (19%)
Query: 330 VRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTD-----DPLQFHFTKEPLMEEYSI 384
+ P SN L P + A G+ V+L TD + L + EE +
Sbjct: 320 CAVVTCPRSN--HHLECGTFDWPAFAAAGVEVALGTDSVASGETLN-------VREEVTF 370
Query: 385 AAQVWK-LSSCDMCELA 400
A Q++ L + A
Sbjct: 371 ARQLYPGLDPRVLVRAA 387
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 27.9 bits (63), Expect = 6.3
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 423 TKEGVAGNDITRTNVPDIRVAFRSETMIEELSNIFRVFKGNVDWKVSLLPG 473
EG+A +T N P++R AF +T+ E+ + F + + + V +L G
Sbjct: 19 FYEGIA--KVT-INRPEVRNAFTPKTV-AEMIDAFSRARDDQNVSVIVLTG 65
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 27.9 bits (63), Expect = 7.0
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 423 TKEGVAGNDITRTNVPDIRVAFRSETMIEELSNIFRVFKGNVDWKVSLLPG 473
G+A I N P R AFR +T+ EL + F + + V LL G
Sbjct: 16 KAGGIA--KIV-INRPHKRNAFRPQTV-FELYDAFCNAREDNRIGVVLLTG 62
>2i9u_A Cytosine/guanine deaminase related protein; protein structure
initiative II (PSI-II), amidohydrol guanine deaminase;
HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP:
b.92.1.4 c.1.9.9
Length = 439
Score = 28.0 bits (63), Expect = 8.3
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 330 VRIAMSPLSNNSLFLNYHRNPLPEYLARGLVVSLSTD 366
V I P SN L P+ +YL G+ V L +D
Sbjct: 286 VTIVHCPTSN--FNLGSGMMPVRKYLNLGINVVLGSD 320
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure,
cysteine-rich, signaling protein; 1.35A {Mus musculus}
SCOP: a.141.1.1
Length = 130
Score = 27.0 bits (59), Expect = 9.0
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 191 AYYQYYTYANLTVLNHFRRARDLNTFVLRPHCGEAGPIQHLVC 233
A + + + L + + + P C E C
Sbjct: 40 AGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPC 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.414
Gapped
Lambda K H
0.267 0.0785 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,422,761
Number of extensions: 442316
Number of successful extensions: 904
Number of sequences better than 10.0: 1
Number of HSP's gapped: 889
Number of HSP's successfully gapped: 35
Length of query: 480
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 383
Effective length of database: 3,993,456
Effective search space: 1529493648
Effective search space used: 1529493648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)