Query psy8147
Match_columns 197
No_of_seqs 105 out of 221
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 19:48:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01534 Frizzled: Frizzled/Sm 100.0 2.1E-57 4.6E-62 405.8 17.9 167 2-186 162-328 (328)
2 KOG3577|consensus 100.0 1.2E-42 2.7E-47 328.7 0.3 168 1-187 377-544 (556)
3 PF11188 DUF2975: Protein of u 85.7 11 0.00023 28.5 9.2 68 23-90 21-88 (136)
4 PF02076 STE3: Pheromone A rec 82.6 9 0.0002 34.0 8.6 81 9-89 138-220 (283)
5 PF10318 7TM_GPCR_Srh: Serpent 78.1 19 0.00041 31.1 9.0 39 57-95 222-265 (302)
6 PF06454 DUF1084: Protein of u 72.3 35 0.00077 30.2 9.3 32 20-51 163-194 (281)
7 PRK12586 putative monovalent c 68.7 30 0.00065 28.1 7.3 76 25-100 10-106 (145)
8 PF11674 DUF3270: Protein of u 66.2 14 0.0003 27.7 4.6 30 57-86 31-62 (90)
9 PRK12585 putative monovalent c 64.6 36 0.00078 29.0 7.3 39 25-63 7-47 (197)
10 PRK12587 putative monovalent c 60.7 51 0.0011 25.8 7.1 37 27-63 10-48 (118)
11 PF13314 DUF4083: Domain of un 58.9 32 0.0007 23.8 5.0 36 33-69 13-51 (58)
12 PF05462 Dicty_CAR: Slime mold 58.6 1.4E+02 0.003 26.8 10.7 84 5-91 142-226 (303)
13 PRK12671 putative monovalent c 54.9 1E+02 0.0022 24.2 8.6 35 21-55 9-43 (120)
14 PRK12674 putative monovalent c 52.5 94 0.002 23.3 7.2 28 27-54 7-34 (99)
15 PF06836 DUF1240: Protein of u 47.4 83 0.0018 23.7 6.1 53 20-83 11-63 (95)
16 PRK06286 putative monovalent c 47.2 27 0.00058 26.2 3.4 32 23-54 5-36 (91)
17 PF06305 DUF1049: Protein of u 46.4 26 0.00057 23.6 3.1 22 33-54 28-52 (68)
18 PHA02655 hypothetical protein; 44.2 30 0.00065 25.2 3.1 29 61-90 54-83 (94)
19 COG4298 Uncharacterized protei 43.8 13 0.00029 27.8 1.3 34 22-55 35-72 (95)
20 PRK12675 putative monovalent c 43.7 51 0.0011 25.2 4.5 36 28-63 4-41 (104)
21 PRK12592 putative monovalent c 43.2 87 0.0019 24.8 5.9 40 24-63 8-49 (126)
22 PRK10929 putative mechanosensi 42.2 2.4E+02 0.0051 30.2 10.4 85 67-183 521-605 (1109)
23 PRK12672 putative monovalent c 40.4 72 0.0016 24.8 5.0 31 25-55 5-35 (118)
24 KOG3249|consensus 38.8 54 0.0012 27.5 4.2 30 17-46 109-138 (181)
25 PRK12670 putative monovalent c 38.1 69 0.0015 24.2 4.4 36 28-63 7-44 (99)
26 PF06814 Lung_7-TM_R: Lung sev 36.7 2.2E+02 0.0048 24.8 8.1 41 19-63 186-226 (295)
27 PF10327 7TM_GPCR_Sri: Serpent 35.1 1.8E+02 0.004 25.6 7.4 37 62-99 239-275 (303)
28 PF00002 7tm_2: 7 transmembran 33.3 14 0.00031 30.6 0.0 42 7-50 141-182 (242)
29 TIGR01300 CPA3_mnhG_phaG monov 31.6 73 0.0016 23.9 3.6 26 30-55 2-27 (97)
30 KOG1311|consensus 31.4 3.4E+02 0.0073 23.6 8.4 77 11-92 151-230 (299)
31 PRK00235 cobS cobalamin syntha 31.2 1.8E+02 0.0038 25.1 6.5 36 58-93 96-133 (249)
32 PF14927 Neurensin: Neurensin 31.0 53 0.0011 26.5 2.9 17 30-46 47-63 (140)
33 COG5000 NtrY Signal transducti 30.6 3.3E+02 0.0072 27.5 8.8 42 55-98 70-112 (712)
34 KOG2927|consensus 29.6 2.1E+02 0.0046 26.7 6.9 21 10-30 179-199 (372)
35 PF07332 DUF1469: Protein of u 28.9 1.8E+02 0.0038 21.7 5.5 30 25-54 70-99 (121)
36 PF14329 DUF4386: Domain of un 28.0 3E+02 0.0065 22.6 7.2 49 44-93 18-71 (215)
37 PF07086 DUF1352: Protein of u 27.7 2.4E+02 0.0051 23.8 6.4 38 32-78 79-116 (186)
38 KOG4193|consensus 26.2 2.1E+02 0.0046 28.4 6.7 53 8-65 461-513 (610)
39 PF06653 Claudin_3: Tight junc 26.0 3.5E+02 0.0075 21.7 7.5 73 17-92 48-120 (163)
40 MTH00261 ATP8 ATP synthase F0 25.7 1.6E+02 0.0035 20.5 4.2 54 20-78 12-65 (68)
41 PF10192 GpcrRhopsn4: Rhodopsi 25.1 4.4E+02 0.0095 22.6 8.4 63 17-90 171-235 (257)
42 TIGR00869 sec62 protein transl 25.0 3.2E+02 0.007 23.9 6.9 11 67-77 167-177 (232)
43 PF14007 YtpI: YtpI-like prote 24.6 90 0.0019 23.3 3.0 25 23-47 52-76 (89)
44 KOG0380|consensus 24.5 3.5E+02 0.0077 26.4 7.7 70 16-92 279-371 (523)
45 KOG2568|consensus 24.2 6.7E+02 0.015 24.6 9.5 29 11-39 329-359 (518)
46 PF11295 DUF3096: Protein of u 24.1 1.8E+02 0.0038 18.6 3.8 26 22-47 11-36 (39)
47 COG3763 Uncharacterized protei 24.0 1.1E+02 0.0024 22.0 3.2 7 61-67 59-65 (71)
48 PF11970 Git3_C: G protein-cou 23.6 2.8E+02 0.0061 19.8 6.6 36 59-94 4-39 (76)
49 KOG2805|consensus 23.2 48 0.0011 30.6 1.6 12 5-16 199-210 (377)
50 PF00001 7tm_1: 7 transmembran 22.5 3.7E+02 0.0081 20.8 10.9 12 6-17 133-144 (257)
51 KOG4812|consensus 22.3 97 0.0021 27.5 3.2 24 28-51 227-250 (262)
52 KOG4647|consensus 22.1 2.5E+02 0.0055 24.8 5.6 70 38-108 115-194 (263)
53 PF05745 CRPA: Chlamydia 15 kD 21.7 1.3E+02 0.0028 24.4 3.5 41 27-84 65-105 (150)
54 PF10317 7TM_GPCR_Srd: Serpent 21.0 5.4E+02 0.012 22.1 9.2 55 42-98 197-256 (292)
55 COG4795 PulJ Type II secretory 20.2 1.6E+02 0.0034 25.0 4.0 35 21-55 8-42 (194)
No 1
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=100.00 E-value=2.1e-57 Score=405.79 Aligned_cols=167 Identities=56% Similarity=1.005 Sum_probs=154.3
Q ss_pred CCCccceEEeecCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHH
Q psy8147 2 SDILTGVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVPAV 81 (197)
Q Consensus 2 GD~LtGiCfVG~~n~~~l~~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~~~~~KL~klm~RIGiFs~ly~vp~~ 81 (197)
|||+||+|||||+|++++++||++|+++||++|++||++|+++|+|||+.+|+++++++||||+|.|||+|+++|++|++
T Consensus 162 gD~ltGiC~Vg~~~~~~l~~fvl~Pl~i~l~iG~~fL~~G~~~l~rir~~~~~~~~~~~Kl~klm~RiGiFsvly~vp~~ 241 (328)
T PF01534_consen 162 GDELTGICFVGNQNPSALRGFVLAPLFIYLLIGTVFLLAGFVSLFRIRRSMKHDGTKTSKLEKLMIRIGIFSVLYLVPAL 241 (328)
T ss_pred cccccceeEEeCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhhhhhhhhhccCCCCCCcCCCCCCCccCCCCcccCCCCCCCcCCCCCCCChHHHHHHHHHHHHhhhh
Q psy8147 82 LVIVCYLYEFVYIDYWMLTWHVDMCSGTSSVSSLSKPMTSSYNNIYSIPCPMGDKRRHVGRKPQFQVFMLKYLMTLIVGI 161 (197)
Q Consensus 82 ~~i~c~~YE~~~~~~W~~s~~~~~C~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~~~if~lk~~m~L~vGI 161 (197)
++++||+||+.|+++|++++++++|... ..|||.+....+++++|++++||+||||+|++||
T Consensus 242 ~~i~c~~YE~~~~~~W~~~~~~~~c~~~------------------~~p~~~~~~~~~~~~~P~~~vf~Lk~~m~LivGI 303 (328)
T PF01534_consen 242 IVIACHFYEYSNRPQWEESWRDYNCCRL------------------NVPCPSDSCSCCPPSRPSFAVFMLKYFMSLIVGI 303 (328)
T ss_pred HHHHHHHHHHHhhHHHhhhcccCcCCcc------------------CCCCCCCCCcccccCCcchHHHHHHHHHHHhhch
Confidence 9999999999999999999999888653 2355543322224679999999999999999999
Q ss_pred ccceeeeccchHHHHHHHHHhhcCC
Q psy8147 162 TSSFWIWSPKTLTSWKEFFYKLKPN 186 (197)
Q Consensus 162 ~~~~Wiws~kT~~sW~r~~~r~~~~ 186 (197)
++|+||||+||+++|||+++|++++
T Consensus 304 tsg~WIwS~KTl~sWrr~~~R~~~~ 328 (328)
T PF01534_consen 304 TSGFWIWSSKTLESWRRFFRRLCGK 328 (328)
T ss_pred heeeeeechHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999863
No 2
>KOG3577|consensus
Probab=100.00 E-value=1.2e-42 Score=328.72 Aligned_cols=168 Identities=53% Similarity=0.940 Sum_probs=154.4
Q ss_pred CCCCccceEEeecCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHH
Q psy8147 1 MSDILTGVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVPA 80 (197)
Q Consensus 1 ~GD~LtGiCfVG~~n~~~l~~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~~~~~KL~klm~RIGiFs~ly~vp~ 80 (197)
.||+++|+|||||.|++++++||++|+++|+++|..||++||++|+|||+++|+++++++||||+|.|||+|++||++|+
T Consensus 377 ~~~~~~giC~vG~~~~~~~~~fvl~pl~~~l~ig~~~l~~G~~~l~~~r~~~k~~~~~~~kl~~~m~~iGifs~Ly~~p~ 456 (556)
T KOG3577|consen 377 DGDELSGICFVGNSNPDALRGFVLAPLFLYLIIGTLFLLAGFVSLFRIRSSIKLSGTCTDKLEKLMVRIGIFSALYTVPA 456 (556)
T ss_pred cccceeEEEecCCCCcchhceeeecchhhhhhHHHHHHHHHHHHHhcccccccCCccchHHHHHHHHhcCcceEEEeecc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhhhhhhhhhccCCCCCCcCCCCCCCccCCCCcccCCCCCCCcCCCCCCCChHHHHHHHHHHHHhhh
Q psy8147 81 VLVIVCYLYEFVYIDYWMLTWHVDMCSGTSSVSSLSKPMTSSYNNIYSIPCPMGDKRRHVGRKPQFQVFMLKYLMTLIVG 160 (197)
Q Consensus 81 ~~~i~c~~YE~~~~~~W~~s~~~~~C~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~~~if~lk~~m~L~vG 160 (197)
.++++||+||+.|++.|+.+|++..|.. .+.||+.... .....+|++.+||+||+|.+++|
T Consensus 457 ~~~~~c~~ye~~~~~~w~~~~~~~~~~~------------------~~~~~~~~~~-~~~~~~p~~~v~m~k~l~~~~vg 517 (556)
T KOG3577|consen 457 LIVIACYFYEQANADSWEGSWEQDCCKI------------------VSFPCPGTAC-CVGKNRPEFGVFMLKYLNSLIVG 517 (556)
T ss_pred eEEEeeEeehhhcccchhhhhhhcccee------------------eccCCcchhc-cccccCchHHHHHHHHHhhcccC
Confidence 9999999999999999999999877765 2457765321 11357899999999999999999
Q ss_pred hccceeeeccchHHHHHHHHHhhcCCC
Q psy8147 161 ITSSFWIWSPKTLTSWKEFFYKLKPNS 187 (197)
Q Consensus 161 I~~~~Wiws~kT~~sW~r~~~r~~~~~ 187 (197)
|++++||||+||+++|+++++|...++
T Consensus 518 i~~~~wv~s~kt~~~w~~~~~~~~~~~ 544 (556)
T KOG3577|consen 518 ITSGFWVWSSKTLDSWQRFIRRGLVSE 544 (556)
T ss_pred cCcceEEecCCCcccchhhhccccccc
Confidence 999999999999999999999987543
No 3
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=85.70 E-value=11 Score=28.51 Aligned_cols=68 Identities=12% Similarity=0.175 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8147 23 VIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVPAVLVIVCYLYE 90 (197)
Q Consensus 23 VL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~~~~~KL~klm~RIGiFs~ly~vp~~~~i~c~~YE 90 (197)
.-.|..++.+++.......++.+.|+-+.++++..=+++.-|.+.|+|...+.+.+...+.-....+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~~~ll~~i~~~~~Fs~~n~~~l~~ig~~~l~~~~~~~~~~~~~~~~ 88 (136)
T PF11188_consen 21 AYWPFLLIGLLVLLLILIALYQLRRLLRNIQKGKPFSPENIRRLRRIGWLLLIISILSFIANFILNYI 88 (136)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666677777777776666665555577888899999999888877766664444443
No 4
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=82.58 E-value=9 Score=34.01 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=60.3
Q ss_pred EEeecCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcc-hhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy8147 9 CYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKT-DKLE-KLMIRICIFSVLYTVPAVLVIVC 86 (197)
Q Consensus 9 CfVG~~n~~~l~~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~~~~-~KL~-klm~RIGiFs~ly~vp~~~~i~c 86 (197)
|.-...+...-..++.+|-.+.-+++.++-...+..+.|-|+.+++--..+ +.|. +.-.|...+++..+++.+-+-..
T Consensus 138 C~~~~~~s~~~~~l~~iwp~i~~lia~vYa~lt~~~f~~rr~~f~~~l~~s~s~l~~~Rf~RL~~la~~~i~~~~P~~i~ 217 (283)
T PF02076_consen 138 CYPAIYPSWPTIFLFIIWPPIFSLIAAVYAILTLRRFIRRRKQFRDILSSSNSGLNTSRFFRLLALALVIILIYLPLSIY 217 (283)
T ss_pred CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666677788888899999999999999999999998876532221 2232 33468888998888887777766
Q ss_pred HHH
Q psy8147 87 YLY 89 (197)
Q Consensus 87 ~~Y 89 (197)
.++
T Consensus 218 ~~v 220 (283)
T PF02076_consen 218 YLV 220 (283)
T ss_pred HHH
Confidence 776
No 5
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=78.10 E-value=19 Score=31.05 Aligned_cols=39 Identities=23% Similarity=0.488 Sum_probs=31.5
Q ss_pred CcchhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy8147 57 TKTDKLEK-----LMIRICIFSVLYTVPAVLVIVCYLYEFVYID 95 (197)
Q Consensus 57 ~~~~KL~k-----lm~RIGiFs~ly~vp~~~~i~c~~YE~~~~~ 95 (197)
.+|.|++| +...+.+..++..+|....+.....++.|+.
T Consensus 222 ~~T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~~~q~ 265 (302)
T PF10318_consen 222 KKTRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFGYYNQA 265 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccc
Confidence 45666665 5677899999999999999999988877754
No 6
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=72.27 E-value=35 Score=30.19 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8147 20 WDFVIIPLSIYLILGLVFLFTGFISLLRIRTI 51 (197)
Q Consensus 20 ~~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~~ 51 (197)
......--.+.+++|+.|+.-|.---.++|+.
T Consensus 163 ~i~~~~~A~isli~a~~Fl~YG~~L~~~Lr~~ 194 (281)
T PF06454_consen 163 IIYAIFIAVISLIAALGFLYYGGKLFFKLRRF 194 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445566788899999999999988999875
No 7
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=68.66 E-value=30 Score=28.09 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--CcchhHHHHHHHHH-------------------HHHHHHHHHHHHH
Q psy8147 25 IPLSIYLILGLVFLFTGFISLLRIRTIMKHDG--TKTDKLEKLMIRIC-------------------IFSVLYTVPAVLV 83 (197)
Q Consensus 25 ~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~--~~~~KL~klm~RIG-------------------iFs~ly~vp~~~~ 83 (197)
+-..+++++|.+|.+.|-+.|+|.++...+-+ ++++-+--.+.=+| ++-++.+.|+..-
T Consensus 10 il~~ill~lG~~f~ligaIGllRfPD~ytRlHAatKa~TlG~~liLlg~~l~~~~~~~~~~~k~lLii~fl~lTaPVaah 89 (145)
T PRK12586 10 LIAAIMILLGSIIALISAIGIVKFQDVFLRSHAATKSSTLSVLLTLIGVLIYFIVNTGFFSVRLLLSLVFINLTSPVGMH 89 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHccccccchhhHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999998866433 34443332222122 2334445666655
Q ss_pred HHHHHHHhhchhhhhhh
Q psy8147 84 IVCYLYEFVYIDYWMLT 100 (197)
Q Consensus 84 i~c~~YE~~~~~~W~~s 100 (197)
...---.+...+.|+.+
T Consensus 90 ~iaRAayr~g~~~~~~~ 106 (145)
T PRK12586 90 LIARAAYRNGAYMYRKN 106 (145)
T ss_pred HHHHHHHHcCCCCCCCc
Confidence 55555555566667664
No 8
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=66.23 E-value=14 Score=27.73 Aligned_cols=30 Identities=17% Similarity=0.383 Sum_probs=23.6
Q ss_pred CcchhHHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy8147 57 TKTDKLEKLM--IRICIFSVLYTVPAVLVIVC 86 (197)
Q Consensus 57 ~~~~KL~klm--~RIGiFs~ly~vp~~~~i~c 86 (197)
....||++++ .||++|+++-++.+.+.++.
T Consensus 31 ~~~~kL~ELlFF~nIA~FcI~tvlfsFvfLs~ 62 (90)
T PF11674_consen 31 QSSAKLKELLFFANIAFFCIFTVLFSFVFLSL 62 (90)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455999976 79999999988777776664
No 9
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=64.65 E-value=36 Score=29.03 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--CcchhHH
Q psy8147 25 IPLSIYLILGLVFLFTGFISLLRIRTIMKHDG--TKTDKLE 63 (197)
Q Consensus 25 ~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~--~~~~KL~ 63 (197)
+-..+++++|++|.+.|-+.|+|..+....-+ ++++-+-
T Consensus 7 iI~~vLLliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLG 47 (197)
T PRK12585 7 IIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFG 47 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhh
Confidence 34457789999999999999999998766433 4444443
No 10
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=60.66 E-value=51 Score=25.77 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCC--CcchhHH
Q psy8147 27 LSIYLILGLVFLFTGFISLLRIRTIMKHDG--TKTDKLE 63 (197)
Q Consensus 27 l~v~L~iG~~fL~~G~~sL~rIR~~~k~~~--~~~~KL~ 63 (197)
..+++++|..|.+.|-+.++|..+...+-+ ++++-+-
T Consensus 10 ~~ill~~G~~~~ligaiGllR~PD~y~RlHAatk~~TlG 48 (118)
T PRK12587 10 ALIFVIIGALISALAAIGLLRLEDVYSRAHAAGKASTLG 48 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHhhhchhhhHhh
Confidence 357788999999999999999988765433 4444443
No 11
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=58.92 E-value=32 Score=23.81 Aligned_cols=36 Identities=33% Similarity=0.542 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCC-Ccch--hHHHHHHHH
Q psy8147 33 LGLVFLFTGFISLLRIRTIMKHDG-TKTD--KLEKLMIRI 69 (197)
Q Consensus 33 iG~~fL~~G~~sL~rIR~~~k~~~-~~~~--KL~klm~RI 69 (197)
+|...|+.-.++++ ||+...+.. ++++ ++||=+-||
T Consensus 13 i~l~vl~~~~Ftl~-IRri~~~s~~kkq~~~~~eqKLDrI 51 (58)
T PF13314_consen 13 IILIVLFGASFTLF-IRRILINSNAKKQDVDSMEQKLDRI 51 (58)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhccccccchhHHHHHHHHH
Confidence 44444444444444 666554432 3333 455544443
No 12
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=58.58 E-value=1.4e+02 Score=26.79 Aligned_cols=84 Identities=15% Similarity=0.337 Sum_probs=44.1
Q ss_pred ccceEEeecCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-CcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy8147 5 LTGVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDG-TKTDKLEKLMIRICIFSVLYTVPAVLV 83 (197)
Q Consensus 5 LtGiCfVG~~n~~~l~~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~-~~~~KL~klm~RIGiFs~ly~vp~~~~ 83 (197)
.++-|-+.......+.+..-+|+.+.+++..++ .|+.. ....+.+++.. .+.+|--+...|+..|-+.+++-.+..
T Consensus 142 ~G~WCWI~~~~~~~r~~lfY~Pl~ii~~~~~il--v~i~~-~~~y~~~~~~~sd~~~~~~~~~~kL~~Yp~ifiicw~fa 218 (303)
T PF05462_consen 142 AGNWCWIKPEWDVWRFALFYIPLWIIIIISAIL--VGITM-RYIYRVIRNGVSDNKDKHLKYQLKLVNYPLIFIICWIFA 218 (303)
T ss_pred CCCceeecCCCcchHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799988766556677789997766555443 33322 22233333222 122333334456656555555544444
Q ss_pred HHHHHHHh
Q psy8147 84 IVCYLYEF 91 (197)
Q Consensus 84 i~c~~YE~ 91 (197)
++=.+|++
T Consensus 219 ~INRI~~~ 226 (303)
T PF05462_consen 219 TINRIYNF 226 (303)
T ss_pred HHHHHHHH
Confidence 44444444
No 13
>PRK12671 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=54.90 E-value=1e+02 Score=24.23 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q psy8147 21 DFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHD 55 (197)
Q Consensus 21 ~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~ 55 (197)
...-.-..+++++|.+|.+.|-+.++|..+...+-
T Consensus 9 ~~~~il~~~lll~G~~f~l~gaiGllR~PD~ytRl 43 (120)
T PRK12671 9 LWAAILVAFFLVLGAGLTLIGTIGLVRLKSFYERL 43 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHh
Confidence 34445567789999999999999999999876643
No 14
>PRK12674 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=52.52 E-value=94 Score=23.27 Aligned_cols=28 Identities=32% Similarity=0.666 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy8147 27 LSIYLILGLVFLFTGFISLLRIRTIMKH 54 (197)
Q Consensus 27 l~v~L~iG~~fL~~G~~sL~rIR~~~k~ 54 (197)
-.+++++|.+|.+.|-+.++|.++...+
T Consensus 7 ~~~ll~~G~~f~~~gaiGllR~pD~y~R 34 (99)
T PRK12674 7 VSVLLLLGAFFALVGAIGLVRLPDVYTR 34 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 4578899999999999999999887654
No 15
>PF06836 DUF1240: Protein of unknown function (DUF1240); InterPro: IPR010665 This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.
Probab=47.43 E-value=83 Score=23.70 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy8147 20 WDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVPAVLV 83 (197)
Q Consensus 20 ~~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~~~~~KL~klm~RIGiFs~ly~vp~~~~ 83 (197)
..+--.|+++|..+..++.. ++=| ..+-.+|+.+.+..+.++++....|....
T Consensus 11 i~~~~~Pll~Y~~~~~~~~~------i~~~-----~~k~n~~i~~~l~~i~I~~~IlS~~~SfY 63 (95)
T PF06836_consen 11 ILIFSSPLLFYFSYLSFFSF------IKNK-----PPKFNNKIVKYLAIIAIISFILSFFFSFY 63 (95)
T ss_pred hhhhhHHHHHHHHHHHHHHh------hcCC-----CchhHHHHHHHHHHHHHHHHHHHhHhhee
Confidence 35667898888766554322 2211 12334577888888888888777776654
No 16
>PRK06286 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=47.17 E-value=27 Score=26.23 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy8147 23 VIIPLSIYLILGLVFLFTGFISLLRIRTIMKH 54 (197)
Q Consensus 23 VL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~ 54 (197)
+-....+++++|..|.+.|-+.++|..+.+|+
T Consensus 5 ~~ii~~illiiG~~f~l~gaiGllRlPD~~~~ 36 (91)
T PRK06286 5 VGIIQDILLIIASIGILIASIRLWRVEKDRKN 36 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeCCCcccc
Confidence 34566788999999999999999999986554
No 17
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.41 E-value=26 Score=23.63 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH---Hhhhhhhcc
Q psy8147 33 LGLVFLFTGFISL---LRIRTIMKH 54 (197)
Q Consensus 33 iG~~fL~~G~~sL---~rIR~~~k~ 54 (197)
.+..+++.+++++ .|.|...++
T Consensus 28 f~~G~llg~l~~~~~~~~~r~~~~~ 52 (68)
T PF06305_consen 28 FLLGALLGWLLSLPSRLRLRRRIRR 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555 344554443
No 18
>PHA02655 hypothetical protein; Provisional
Probab=44.21 E-value=30 Score=25.24 Aligned_cols=29 Identities=28% Similarity=0.697 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy8147 61 KLEKLMIRICIFSVLYTVPAVL-VIVCYLYE 90 (197)
Q Consensus 61 KL~klm~RIGiFs~ly~vp~~~-~i~c~~YE 90 (197)
|-+-.|.|..+|.+ |++|..+ .+.|.+.-
T Consensus 54 knqytmlkfvvfti-ylipfvivmisciflv 83 (94)
T PHA02655 54 KNQYTMLKFVVFTI-YLIPFVIVMISCIFLV 83 (94)
T ss_pred hhhhheehheeehh-hHHHHHHHHHHHHHhh
Confidence 33567889899975 5666554 47787654
No 19
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.78 E-value=13 Score=27.78 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=25.5
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhhccC
Q psy8147 22 FVIIPLS----IYLILGLVFLFTGFISLLRIRTIMKHD 55 (197)
Q Consensus 22 FVL~Pl~----v~L~iG~~fL~~G~~sL~rIR~~~k~~ 55 (197)
.+++|+= -|+..|+.||..-.+.|.|-|+..+..
T Consensus 35 i~~lPVD~w~KGy~~MG~lfltgSt~tL~K~~rD~he~ 72 (95)
T COG4298 35 IWLLPVDLWTKGYWAMGILFLTGSTVTLVKYRRDEHES 72 (95)
T ss_pred hheechHHHHHHHHHHHHHHHhcchhhhhHHhhhHHHH
Confidence 3455543 378899999999999999988765443
No 20
>PRK12675 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=43.66 E-value=51 Score=25.21 Aligned_cols=36 Identities=28% Similarity=0.483 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCC--CcchhHH
Q psy8147 28 SIYLILGLVFLFTGFISLLRIRTIMKHDG--TKTDKLE 63 (197)
Q Consensus 28 ~v~L~iG~~fL~~G~~sL~rIR~~~k~~~--~~~~KL~ 63 (197)
.+++++|.+|.+.|-+.++|.++...+-+ ++++-+-
T Consensus 4 ~~lll~G~~f~l~g~iGllR~PD~ytRlHAatk~~TlG 41 (104)
T PRK12675 4 LLFLLFGYSIMFFGALGLLRFPDVYTRLHAATKCDTGG 41 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHhhhchhhhhhh
Confidence 46789999999999999999988765433 4444443
No 21
>PRK12592 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=43.22 E-value=87 Score=24.79 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--CcchhHH
Q psy8147 24 IIPLSIYLILGLVFLFTGFISLLRIRTIMKHDG--TKTDKLE 63 (197)
Q Consensus 24 L~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~--~~~~KL~ 63 (197)
-.-..+++++|.+|.+.|-+.|+|.++...+-+ ++++-+-
T Consensus 8 ~il~~~lll~G~~f~l~gaiGllRfPD~ytRlHAaTKa~TlG 49 (126)
T PRK12592 8 DIVSLVFILSGAFLSFSASIGLIRFRDTMSRVHAITKPQTTG 49 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHcccchhhhhHH
Confidence 344567899999999999999999998876543 4544443
No 22
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=42.25 E-value=2.4e+02 Score=30.15 Aligned_cols=85 Identities=14% Similarity=0.276 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhccCCCCCCcCCCCCCCccCCCCcccCCCCCCCcCCCCCCCChH
Q psy8147 67 IRICIFSVLYTVPAVLVIVCYLYEFVYIDYWMLTWHVDMCSGTSSVSSLSKPMTSSYNNIYSIPCPMGDKRRHVGRKPQF 146 (197)
Q Consensus 67 ~RIGiFs~ly~vp~~~~i~c~~YE~~~~~~W~~s~~~~~C~~~~~~~~l~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~~ 146 (197)
.|--..++++.+|..+.++...|-..+ .|... .|... + ..- ...-|-+
T Consensus 521 ~~al~~t~l~alP~pl~~~~~g~~l~~--~~~~~----~~~~~------------------~-~~~-------~~~~~~~ 568 (1109)
T PRK10929 521 LRTVFWSILVASPLPVLWAALGYGLQN--AWPYP----LAVAI------------------G-DGV-------TATVPLL 568 (1109)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhh--hhhhh----hHhhc------------------c-HHH-------HHHHHHH
Confidence 456788899999999998888887666 35432 11110 0 000 0011344
Q ss_pred HHHHHHHHHHHhhhhccceeeeccchHHHHHHHHHhh
Q psy8147 147 QVFMLKYLMTLIVGITSSFWIWSPKTLTSWKEFFYKL 183 (197)
Q Consensus 147 ~if~lk~~m~L~vGI~~~~Wiws~kT~~sW~r~~~r~ 183 (197)
++|++=+-+.-=-|+...--=|+++.++.++|.+++.
T Consensus 569 w~~~~~~~~~~~~Gl~~~HF~w~~~~v~~~~~~~~~~ 605 (1109)
T PRK10929 569 WVFMICATFARPNGLFIAHFGWPRERVARAMRYYLLS 605 (1109)
T ss_pred HHHHHHHHHcCCCCeeHHhcCCCHHHHHHHHHHHHHH
Confidence 5555444444556899999999999999999988764
No 23
>PRK12672 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=40.40 E-value=72 Score=24.82 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q psy8147 25 IPLSIYLILGLVFLFTGFISLLRIRTIMKHD 55 (197)
Q Consensus 25 ~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~ 55 (197)
....+++++|.+|.+.|-+.++|.++...+-
T Consensus 5 ~l~~ill~~G~~f~l~gaiGllR~PD~ytRl 35 (118)
T PRK12672 5 YLIYIFLAIGVTFNLLGSIALHRFPDVYTRL 35 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHh
Confidence 3457889999999999999999999876643
No 24
>KOG3249|consensus
Probab=38.78 E-value=54 Score=27.46 Aligned_cols=30 Identities=33% Similarity=0.593 Sum_probs=24.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8147 17 QALWDFVIIPLSIYLILGLVFLFTGFISLL 46 (197)
Q Consensus 17 ~~l~~FVL~Pl~v~L~iG~~fL~~G~~sL~ 46 (197)
..+.+|||+|+++=+=.|.+|++...++.+
T Consensus 109 ~vllW~vL~~ia~~l~fGlvff~lSlf~~i 138 (181)
T KOG3249|consen 109 IVLLWFVLAPIAHRLDFGLVFFLLSLFSII 138 (181)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 357899999999999999999887665544
No 25
>PRK12670 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=38.12 E-value=69 Score=24.17 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCC--CcchhHH
Q psy8147 28 SIYLILGLVFLFTGFISLLRIRTIMKHDG--TKTDKLE 63 (197)
Q Consensus 28 ~v~L~iG~~fL~~G~~sL~rIR~~~k~~~--~~~~KL~ 63 (197)
.+++++|.+|.+.|-+.++|.++...+-+ ++++-+-
T Consensus 7 ~~ll~~G~~f~l~g~iGllR~pD~y~RlHA~tk~~TlG 44 (99)
T PRK12670 7 MITLGLGIFLIVISVIGVIRFPDFYTRLHAAGITDSLG 44 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHhhccccchhhh
Confidence 46788999999999999999998766433 4544443
No 26
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=36.72 E-value=2.2e+02 Score=24.76 Aligned_cols=41 Identities=32% Similarity=0.381 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhHH
Q psy8147 19 LWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLE 63 (197)
Q Consensus 19 l~~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~~~~~KL~ 63 (197)
...|.++|+++.. .+|+.--+.+|-+-.+..|. .+++.|++
T Consensus 186 ~~~~~~~~l~~~~---~~~~~wi~~sL~~t~~~lk~-~~q~~KL~ 226 (295)
T PF06814_consen 186 NFIFFLLPLCILD---LFFIVWIFRSLSKTIRDLKA-RRQTAKLS 226 (295)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5678888983332 23555556666554444442 23455554
No 27
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=35.08 E-value=1.8e+02 Score=25.61 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q psy8147 62 LEKLMIRICIFSVLYTVPAVLVIVCYLYEFVYIDYWML 99 (197)
Q Consensus 62 L~klm~RIGiFs~ly~vp~~~~i~c~~YE~~~~~~W~~ 99 (197)
+..++....+-+++. +|..+.....++|..+....-+
T Consensus 239 v~SLi~Q~~~~~i~~-~P~~~~~~~~~~~~~~~q~i~~ 275 (303)
T PF10327_consen 239 VRSLIAQFATSSICI-LPPFIFVVVVIFEFEDAQVISE 275 (303)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhhhhheecCCCcHHHHH
Confidence 466778876666665 9999999999999887776544
No 28
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=33.26 E-value=14 Score=30.60 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred ceEEeecCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8147 7 GVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRT 50 (197)
Q Consensus 7 GiCfVG~~n~~~l~~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~ 50 (197)
.-|...+. ....+...+|..+.+++..++++.-+..+.+.++
T Consensus 141 ~~CWl~~~--~~~~~~f~~P~~~~l~in~vi~~~v~~~l~~~~~ 182 (242)
T PF00002_consen 141 DNCWLSND--WGFIWAFVGPVLIILLINIVIFILVLRVLVRKSR 182 (242)
T ss_dssp --------------------------------------------
T ss_pred ccccccCC--CceEEEEEecccceecccchhheeeEEeehhhhh
Confidence 34777662 2344567899999999999888887766665444
No 29
>TIGR01300 CPA3_mnhG_phaG monovalent cation/proton antiporter, MnhG/PhaG subunit. This model represents a subfamily of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti, show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons.
Probab=31.55 E-value=73 Score=23.91 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccC
Q psy8147 30 YLILGLVFLFTGFISLLRIRTIMKHD 55 (197)
Q Consensus 30 ~L~iG~~fL~~G~~sL~rIR~~~k~~ 55 (197)
++++|.+|.+.|-+-++|..+...+-
T Consensus 2 ll~~G~~f~l~g~iGllR~pD~y~Rl 27 (97)
T TIGR01300 2 LLLIGAFFTLLGAIGLVRFPDVYTRL 27 (97)
T ss_pred hHHHHHHHHHHHHHHHHhCCcHHHHh
Confidence 57899999999999999998876643
No 30
>KOG1311|consensus
Probab=31.43 E-value=3.4e+02 Score=23.65 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=33.1
Q ss_pred eecCchhhHhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhccCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8147 11 VGIWNRQALWDFVIIPLSIYLILGLVFLFT-GFISLLRIRTIMKHDGT--KTDKLEKLMIRICIFSVLYTVPAVLVIVCY 87 (197)
Q Consensus 11 VG~~n~~~l~~FVL~Pl~v~L~iG~~fL~~-G~~sL~rIR~~~k~~~~--~~~KL~klm~RIGiFs~ly~vp~~~~i~c~ 87 (197)
||..|......|++ ++.++.+..+. +++.+.+.....+..-+ ...+..-...=+++.+++...+....+.-|
T Consensus 151 VG~rNyr~F~~f~~-----~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~fh 225 (299)
T KOG1311|consen 151 IGERNYRYFVLFLF-----YLALGVLLALAFLFYELLQRADNLKVNLTPVLIPAGTFLSALLGLLSALFLAFTSALLCFH 225 (299)
T ss_pred ECCCchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888865554444 34444333332 22222222222121111 112222233334445555555555555555
Q ss_pred HHHhh
Q psy8147 88 LYEFV 92 (197)
Q Consensus 88 ~YE~~ 92 (197)
+|-..
T Consensus 226 ~~li~ 230 (299)
T KOG1311|consen 226 IYLIK 230 (299)
T ss_pred eeeEe
Confidence 55433
No 31
>PRK00235 cobS cobalamin synthase; Reviewed
Probab=31.21 E-value=1.8e+02 Score=25.08 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=25.9
Q ss_pred cchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8147 58 KTDKLEKLM--IRICIFSVLYTVPAVLVIVCYLYEFVY 93 (197)
Q Consensus 58 ~~~KL~klm--~RIGiFs~ly~vp~~~~i~c~~YE~~~ 93 (197)
+.+|--+.| .|+|.|+++..+..+..=..-++|...
T Consensus 96 ~~er~LeIMKDsriGa~Gvlali~~lllk~~~l~~l~~ 133 (249)
T PRK00235 96 DRERRLEIMKDSRIGTFGVLALVLVLLLKILALAALRP 133 (249)
T ss_pred CHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566 589999999998888776666666653
No 32
>PF14927 Neurensin: Neurensin
Probab=31.01 E-value=53 Score=26.54 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8147 30 YLILGLVFLFTGFISLL 46 (197)
Q Consensus 30 ~L~iG~~fL~~G~~sL~ 46 (197)
.+++|++||+.|+.+|.
T Consensus 47 ~~i~g~l~Ll~Gi~~l~ 63 (140)
T PF14927_consen 47 GFISGLLLLLLGIVALT 63 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56667777777766654
No 33
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=30.56 E-value=3.3e+02 Score=27.53 Aligned_cols=42 Identities=24% Similarity=0.490 Sum_probs=25.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhchhhhh
Q psy8147 55 DGTKTDKLEKLMIRICIFSVLYTVPAVLVIVCYL-YEFVYIDYWM 98 (197)
Q Consensus 55 ~~~~~~KL~klm~RIGiFs~ly~vp~~~~i~c~~-YE~~~~~~W~ 98 (197)
.|+..++|+.-+ .++||+..++|++++..--. .-...-+.|-
T Consensus 70 ~Gka~sRLh~Ri--v~lFslvav~Pavivaifs~~~in~gld~WF 112 (712)
T COG5000 70 LGKAGSRLHVRI--VGLFSLVAVIPAVIVAIFSAQFINLGLDRWF 112 (712)
T ss_pred cCchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 345556665443 47899999999998844333 2333345564
No 34
>KOG2927|consensus
Probab=29.60 E-value=2.1e+02 Score=26.72 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=11.1
Q ss_pred EeecCchhhHhHHHHHHHHHH
Q psy8147 10 YVGIWNRQALWDFVIIPLSIY 30 (197)
Q Consensus 10 fVG~~n~~~l~~FVL~Pl~v~ 30 (197)
||=+.++..+..++|+=+++.
T Consensus 179 YVW~yep~~~~~~vl~~~fvl 199 (372)
T KOG2927|consen 179 YVWIYEPRPLMWQVLGVLFVL 199 (372)
T ss_pred EEEeccCCchhHHHHHHHHHH
Confidence 455556655555555544433
No 35
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=28.89 E-value=1.8e+02 Score=21.72 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q psy8147 25 IPLSIYLILGLVFLFTGFISLLRIRTIMKH 54 (197)
Q Consensus 25 ~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~ 54 (197)
-|...++++++.+++.|.+.+...++.++.
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~~~l~~ 99 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGRRRLRR 99 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678888888888888888888877764
No 36
>PF14329 DUF4386: Domain of unknown function (DUF4386)
Probab=28.05 E-value=3e+02 Score=22.60 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=36.6
Q ss_pred HHHhhhhhhccCCCcchhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8147 44 SLLRIRTIMKHDGTKTDKL-----EKLMIRICIFSVLYTVPAVLVIVCYLYEFVY 93 (197)
Q Consensus 44 sL~rIR~~~k~~~~~~~KL-----~klm~RIGiFs~ly~vp~~~~i~c~~YE~~~ 93 (197)
+.+-.+..+...+ ..+.+ ++.+.|+|++..+-.....+.++..+|....
T Consensus 18 ~~~~~~~~l~~p~-~~~~l~~~~~~~~~~~~g~~~~~i~~~~~v~~a~~Ly~~l~ 71 (215)
T PF14329_consen 18 AFFYVPGILIVPG-AAATLANIAANEGLFRLGILLYLIMALLDVVVAVALYPLLK 71 (215)
T ss_pred HHHhcchhccCCC-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556677766554 33333 2367899999999999999999999999884
No 37
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=27.66 E-value=2.4e+02 Score=23.81 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCcchhHHHHHHHHHHHHHHHHH
Q psy8147 32 ILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTV 78 (197)
Q Consensus 32 ~iG~~fL~~G~~sL~rIR~~~k~~~~~~~KL~klm~RIGiFs~ly~v 78 (197)
+++.+-++.|..++-| ++..-++..|.-+++|+++-.+
T Consensus 79 ~lS~ip~~~G~~s~~r---------N~i~~l~~y~~~~~~~gl~pl~ 116 (186)
T PF07086_consen 79 CLSLIPSLLGLLSLRR---------NNISLLRLYMIGSSLFGLLPLI 116 (186)
T ss_pred HHHHHHHHHHHHhccc---------chHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555544332 3556677788888888875433
No 38
>KOG4193|consensus
Probab=26.23 E-value=2.1e+02 Score=28.35 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=39.4
Q ss_pred eEEeecCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhHHHH
Q psy8147 8 VCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKL 65 (197)
Q Consensus 8 iCfVG~~n~~~l~~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~~~~~KL~kl 65 (197)
-|-+..++...- ..++|+++.+++=+.+++.-+..|++.+...++ .++|+++.
T Consensus 461 ~CWl~~~~~~~~--~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~---~~~~~~~~ 513 (610)
T KOG4193|consen 461 VCWLDTQNGFIW--SFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQP---IASKLENI 513 (610)
T ss_pred ceEEecCCceEE--EEehHHHHHHHHHHHHHHHHHHHHhhcccccCc---chhhHHHH
Confidence 488877765322 268999999999999999999998887776554 45555554
No 39
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=26.03 E-value=3.5e+02 Score=21.71 Aligned_cols=73 Identities=16% Similarity=0.323 Sum_probs=48.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8147 17 QALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVPAVLVIVCYLYEFV 92 (197)
Q Consensus 17 ~~l~~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~~~~~KL~klm~RIGiFs~ly~vp~~~~i~c~~YE~~ 92 (197)
....+|..++...|+.++..++...+..+. .++..|+ + -..+.++...=+.+++++.++..++.+.-+-.+..
T Consensus 48 ~~~~W~~~as~lm~is~~~~~i~i~~~~~~-~~~v~~~-g-~~~~~r~~~~~i~~~s~li~il~~iavil~a~~~~ 120 (163)
T PF06653_consen 48 SEPGWFAAASWLMYISFACFIIMIIFYIII-VYKVRKH-G-YSCSIRKWFHIISIFSLLIVILTIIAVILFAVNIS 120 (163)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHH-heeEecc-c-ccHHHHHHHHHHHHHHHHHHHHHHHHheeEEeecc
Confidence 344689999999999999988877544333 3333232 2 34566777777888888877777665554443333
No 40
>MTH00261 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=25.72 E-value=1.6e+02 Score=20.48 Aligned_cols=54 Identities=30% Similarity=0.455 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhHHHHHHHHHHHHHHHHH
Q psy8147 20 WDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTV 78 (197)
Q Consensus 20 ~~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~~~~~KL~klm~RIGiFs~ly~v 78 (197)
..||+.-++..+++-...=.-.|+-...||..+. .+.+|..+..---||++|-+
T Consensus 12 hyfvllllf~iliilisikfynfflvlnirnn~~-----~~s~~~~~~n~kqfsil~~i 65 (68)
T MTH00261 12 HYFVLLLLFFILIILISIKFYNFFLVLNIRNNFI-----CNSLELIIINFKQFSILQNI 65 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeEeccccee-----cchHHHHhcCHHHHHHHHHH
Confidence 3677777776666655544455555566676533 23455566666678888755
No 41
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=25.15 E-value=4.4e+02 Score=22.56 Aligned_cols=63 Identities=14% Similarity=0.415 Sum_probs=34.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q psy8147 17 QALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTV--PAVLVIVCYLYE 90 (197)
Q Consensus 17 ~~l~~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~~~~~~KL~klm~RIGiFs~ly~v--p~~~~i~c~~YE 90 (197)
++..|..++ ++.+++...|+.....++- . .+..+-+++..+.+++..++++ |.++.++-.+-+
T Consensus 171 ~s~pGy~li--~lri~~~~~F~~~~~~t~~-------~--~~~~~k~~Fy~~f~~~~~lWFl~~Pv~~~ia~~v~~ 235 (257)
T PF10192_consen 171 DSWPGYILI--ALRIVLAIWFIYGLYQTIS-------K--EKDPEKRKFYLPFGIIFSLWFLSLPVIVIIAHFVDP 235 (257)
T ss_pred ccHHHHHHH--HHHHHHHHHHHHHHHHHHH-------H--hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 445555544 4445555555444433221 1 1223557788888888887775 776666555433
No 42
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=25.03 E-value=3.2e+02 Score=23.87 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q psy8147 67 IRICIFSVLYT 77 (197)
Q Consensus 67 ~RIGiFs~ly~ 77 (197)
+|.-+|.+.++
T Consensus 167 vRlilF~i~~~ 177 (232)
T TIGR00869 167 LRLILFVLTLI 177 (232)
T ss_pred HHHHHHHHHHH
Confidence 34444544443
No 43
>PF14007 YtpI: YtpI-like protein
Probab=24.55 E-value=90 Score=23.28 Aligned_cols=25 Identities=28% Similarity=0.627 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8147 23 VIIPLSIYLILGLVFLFTGFISLLR 47 (197)
Q Consensus 23 VL~Pl~v~L~iG~~fL~~G~~sL~r 47 (197)
++-+-.+-+++|.+|++.|+.+++-
T Consensus 52 ~~~~st~~~iV~~ifl~lG~~n~~~ 76 (89)
T PF14007_consen 52 FLFGSTVRLIVGAIFLVLGLFNLFA 76 (89)
T ss_pred HHcccHHHHHHHHHHHHHhHHHHHH
Confidence 3456677788888888888887764
No 44
>KOG0380|consensus
Probab=24.53 E-value=3.5e+02 Score=26.44 Aligned_cols=70 Identities=19% Similarity=0.381 Sum_probs=40.7
Q ss_pred hhhHhHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhh---hhhhccCCCcchhHHHHHHHHHHH
Q psy8147 16 RQALWDFVIIPLSIY--------------------LILGLVFLFTGFISLLRI---RTIMKHDGTKTDKLEKLMIRICIF 72 (197)
Q Consensus 16 ~~~l~~FVL~Pl~v~--------------------L~iG~~fL~~G~~sL~rI---R~~~k~~~~~~~KL~klm~RIGiF 72 (197)
...+..|.++|-++| =++|++||...++-=.-+ |+.++.... +..++..|+
T Consensus 279 ~~~~lyFlf~PTLcYq~~yPRt~~iR~~yvl~k~~e~~g~~~l~~~i~~q~~vP~~~n~~~~~~~---~~~~~~~~l--- 352 (523)
T KOG0380|consen 279 LSNFLYFLFAPTLCYQLSYPRTARIRWRYVLEKFLELLGCIFLMVFIFQQWMVPVARNSKDPPFS---DASRLIERL--- 352 (523)
T ss_pred HHHHHHHHhcchhcccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccc---hHHHHHHHH---
Confidence 346778888888776 357777777776544433 333332212 333444443
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy8147 73 SVLYTVPAVLVIVCYLYEFV 92 (197)
Q Consensus 73 s~ly~vp~~~~i~c~~YE~~ 92 (197)
+--.+|..+...|.||-..
T Consensus 353 -l~l~iP~il~~Ll~FY~if 371 (523)
T KOG0380|consen 353 -LKLMIPGILIWLLFFYLIF 371 (523)
T ss_pred -HHHhhhHHHHHHHHHHHHH
Confidence 3446777777777777543
No 45
>KOG2568|consensus
Probab=24.15 E-value=6.7e+02 Score=24.55 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=17.2
Q ss_pred eecCchhh--HhHHHHHHHHHHHHHHHHHHH
Q psy8147 11 VGIWNRQA--LWDFVIIPLSIYLILGLVFLF 39 (197)
Q Consensus 11 VG~~n~~~--l~~FVL~Pl~v~L~iG~~fL~ 39 (197)
+|+++... +..|..+|+++....=.+.++
T Consensus 329 ~g~~se~~~~~~lf~~ip~ai~d~~f~~wIF 359 (518)
T KOG2568|consen 329 IGNISELSSLLILFAALPLAILDAAFIYWIF 359 (518)
T ss_pred hcCcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 35555433 256888898887765433333
No 46
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=24.07 E-value=1.8e+02 Score=18.62 Aligned_cols=26 Identities=19% Similarity=0.553 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8147 22 FVIIPLSIYLILGLVFLFTGFISLLR 47 (197)
Q Consensus 22 FVL~Pl~v~L~iG~~fL~~G~~sL~r 47 (197)
-.+.|-.+-.++|.++++.|...|+-
T Consensus 11 iLi~PrllnyiVaiyLI~~G~lgL~~ 36 (39)
T PF11295_consen 11 ILIMPRLLNYIVAIYLIVIGLLGLFG 36 (39)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45689999999999999999988763
No 47
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.02 E-value=1.1e+02 Score=22.00 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=3.0
Q ss_pred hHHHHHH
Q psy8147 61 KLEKLMI 67 (197)
Q Consensus 61 KL~klm~ 67 (197)
|+.+.|.
T Consensus 59 kI~Qvm~ 65 (71)
T COG3763 59 KINQVMR 65 (71)
T ss_pred HHHHHHH
Confidence 4444443
No 48
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=23.63 E-value=2.8e+02 Score=19.80 Aligned_cols=36 Identities=11% Similarity=0.367 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy8147 59 TDKLEKLMIRICIFSVLYTVPAVLVIVCYLYEFVYI 94 (197)
Q Consensus 59 ~~KL~klm~RIGiFs~ly~vp~~~~i~c~~YE~~~~ 94 (197)
.+|++|-+..|-++=+.|++-+++=++.+.+.+.+.
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~ 39 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYE 39 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999998888888777776643
No 49
>KOG2805|consensus
Probab=23.23 E-value=48 Score=30.62 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=10.2
Q ss_pred ccceEEeecCch
Q psy8147 5 LTGVCYVGIWNR 16 (197)
Q Consensus 5 LtGiCfVG~~n~ 16 (197)
=.||||||+.++
T Consensus 199 SqGICFvgk~~~ 210 (377)
T KOG2805|consen 199 SQGICFVGKIKH 210 (377)
T ss_pred cceeEEeccchh
Confidence 469999999885
No 50
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=22.47 E-value=3.7e+02 Score=20.83 Aligned_cols=12 Identities=8% Similarity=0.525 Sum_probs=9.4
Q ss_pred cceEEeecCchh
Q psy8147 6 TGVCYVGIWNRQ 17 (197)
Q Consensus 6 tGiCfVG~~n~~ 17 (197)
.+.|.....+..
T Consensus 133 ~~~C~~~~~~~~ 144 (257)
T PF00001_consen 133 QSFCFIDFSSSS 144 (257)
T ss_dssp CEEEEESCSSSH
T ss_pred cccccccccccc
Confidence 568999888775
No 51
>KOG4812|consensus
Probab=22.28 E-value=97 Score=27.48 Aligned_cols=24 Identities=38% Similarity=0.960 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q psy8147 28 SIYLILGLVFLFTGFISLLRIRTI 51 (197)
Q Consensus 28 ~v~L~iG~~fL~~G~~sL~rIR~~ 51 (197)
.+++++|.+..++||+--+|||+.
T Consensus 227 wi~~vlG~ll~lr~~i~YikVrrm 250 (262)
T KOG4812|consen 227 WIFLVLGLLLFLRGFINYIKVRRM 250 (262)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhH
Confidence 467889999999999999999975
No 52
>KOG4647|consensus
Probab=22.10 E-value=2.5e+02 Score=24.75 Aligned_cols=70 Identities=29% Similarity=0.406 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhhhhccCCCcchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhchh--------hhhhhhhhccCC
Q psy8147 38 LFTGFISLLRIRTIMKHDGTKTDKLEKLMI--RICIFSVLYTVPAVLVIVCYLYEFVYID--------YWMLTWHVDMCS 107 (197)
Q Consensus 38 L~~G~~sL~rIR~~~k~~~~~~~KL~klm~--RIGiFs~ly~vp~~~~i~c~~YE~~~~~--------~W~~s~~~~~C~ 107 (197)
++.|..+|+.|... ++-+...+..|.+|. -|-.-+-+..|-.++-+.|.+||....- .|.-..|-+.|+
T Consensus 115 Iv~g~~~l~gi~d~-~~~~~~~~d~edv~~DTs~~~~q~ll~Ve~v~k~~vCfyEav~~~~~~GaTpGK~l~giRV~~c~ 193 (263)
T KOG4647|consen 115 IVGGTLSLLGIIDL-KQIGASLDDDEDVMNDTSINLAQDLLPVEVVCKVFVCFYEAVLMARGFGATPGKWLCGIRVISCR 193 (263)
T ss_pred HHHhHHHhhcchhH-HHHHHhhccHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcceeeeeEEEEEe
Confidence 34567777776653 222333444455554 3444444667777888888999975432 344444445665
Q ss_pred C
Q psy8147 108 G 108 (197)
Q Consensus 108 ~ 108 (197)
.
T Consensus 194 ~ 194 (263)
T KOG4647|consen 194 D 194 (263)
T ss_pred c
Confidence 4
No 53
>PF05745 CRPA: Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); InterPro: IPR008436 Chlamydia is a genus of bacteria, which causes the most common bacterial sexually transmitted diseases. They are obligate intracellular bacterial pathogens. Members of this genus lack a peptidoglycan layer, but as a substitute, it has been proposed that they have several cysteine rich membrane proteins. This includes the major outer membrane protein (MOMP). These form disulphide bonds to provide rigidity to the cell wall. The alignment of the amino acid sequences of the MOMP from various serovars of Chlamydia show that they have between seven and ten cysteine residues; seven of which are highly conserved []. The MOMP has been the focus of efforts to produce a vaccine for Chlamydia trachomatis []. The 15 kDa cysteine-rich protein in this entry is a multi-pass outer membrane protein. They are associated with the differentiation of reticulate bodies (RBs) into elementary bodies (EBs) []. They immunolocalise to the inclusion membrane, which is the membrane that surrounds the intracellular parasite. These proteins are recognised by CD8+ T cells in both human and mouse infections, suggesting they gain access to the host cytoplasm.; GO: 0019867 outer membrane
Probab=21.74 E-value=1.3e+02 Score=24.41 Aligned_cols=41 Identities=17% Similarity=0.434 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8147 27 LSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVPAVLVI 84 (197)
Q Consensus 27 l~v~L~iG~~fL~~G~~sL~rIR~~~k~~~~~~~KL~klm~RIGiFs~ly~vp~~~~i 84 (197)
....+++|.+.+++|+.-+|-+...+ |.=++++.+||++-+
T Consensus 65 qItl~VlGiiLviagl~l~fil~~~l-----------------g~naf~~~IPAviGl 105 (150)
T PF05745_consen 65 QITLVVLGIILVIAGLALTFILHSQL-----------------GNNAFLFIIPAVIGL 105 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHhhehhhh-----------------cCccchhhHHHHHHH
Confidence 34567789999999999888766542 333466788887643
No 54
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=20.98 E-value=5.4e+02 Score=22.13 Aligned_cols=55 Identities=11% Similarity=0.235 Sum_probs=28.6
Q ss_pred HHHHHhhhhhhccCC----CcchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhchhhhh
Q psy8147 42 FISLLRIRTIMKHDG----TKTDKLEKLMIRICIFSVLYTVPAVLVI-VCYLYEFVYIDYWM 98 (197)
Q Consensus 42 ~~sL~rIR~~~k~~~----~~~~KL~klm~RIGiFs~ly~vp~~~~i-~c~~YE~~~~~~W~ 98 (197)
++.=-||.+.+++.+ +++++.+|.++|.-.+-. .+|.+..+ +.-.|-......++
T Consensus 197 ~~~R~ki~~~L~~~~~~~S~~tk~~h~~lv~~Lt~Q~--~lP~~~~~p~~~~~~~~~~~~~~ 256 (292)
T PF10317_consen 197 FFLRRKILKFLNKKSSSMSERTKSMHRQLVKGLTIQA--LLPLFFYIPGVIIYFLSQFTGYE 256 (292)
T ss_pred HHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhccc
Confidence 333344445555422 356677888888655554 45666555 44444443333333
No 55
>COG4795 PulJ Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]
Probab=20.20 E-value=1.6e+02 Score=24.97 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q psy8147 21 DFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHD 55 (197)
Q Consensus 21 ~FVL~Pl~v~L~iG~~fL~~G~~sL~rIR~~~k~~ 55 (197)
||.|+=+.+-+.++.+.++.++..|-.+.+..++.
T Consensus 8 GFTLLEvmvAl~i~All~l~a~~~L~s~~r~~~~~ 42 (194)
T COG4795 8 GFTLLEVLVALAIFALLLLLAFRFLDSAQRSNQAS 42 (194)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887765543
Done!