Query psy8147
Match_columns 197
No_of_seqs 105 out of 221
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 19:48:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zw3_A GAP junction beta-2 pro 23.9 3E+02 0.01 22.6 8.5 29 130-161 173-201 (226)
2 2l9u_A Receptor tyrosine-prote 23.8 1E+02 0.0035 18.5 3.5 21 19-39 9-29 (40)
3 3d3b_A Protein NUSB, N utiliza 19.8 69 0.0024 23.8 2.8 27 58-84 78-106 (141)
4 1tzv_A NUSB protein, N utiliza 17.6 58 0.002 24.3 1.9 26 59-84 77-104 (142)
5 3rhw_A Avermectin-sensitive gl 17.6 3.8E+02 0.013 22.4 7.4 15 75-89 320-334 (347)
6 3pbl_A D(3) dopamine receptor, 15.5 3.9E+02 0.013 22.2 6.9 25 68-92 198-222 (481)
7 3rko_K NADH-quinone oxidoreduc 15.5 1.1E+02 0.0038 21.5 2.9 26 25-51 2-27 (100)
8 1rh5_A Preprotein translocase 13.8 4.7E+02 0.016 23.4 7.2 55 26-80 317-388 (436)
9 1eyv_A NUSB protein, N-utilizi 13.6 84 0.0029 23.9 1.9 26 59-84 85-112 (156)
10 1pfi_A Major coat protein of P 13.0 1.6E+02 0.0053 18.4 2.6 26 12-37 15-40 (46)
No 1
>2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane channel, two double layered lipid spanning, cellular adhesion, cell junction; 3.50A {Homo sapiens} PDB: 3iz1_A 3iz2_A
Probab=23.86 E-value=3e+02 Score=22.59 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=16.2
Q ss_pred CCCCCCcCCCCCCCChHHHHHHHHHHHHhhhh
Q psy8147 130 PCPMGDKRRHVGRKPQFQVFMLKYLMTLIVGI 161 (197)
Q Consensus 130 ~C~~~~~~~~~~~~P~~~if~lk~~m~L~vGI 161 (197)
|||...++. -+||. +--+.=+||.-+.++
T Consensus 173 PCp~~VdCf--vSRPt-EKtifl~fM~~vs~l 201 (226)
T 2zw3_A 173 PCPNTVDCF--VSRPT-EKTVFTVFMIAVSGI 201 (226)
T ss_dssp TSSSSEEEE--CSSHH-HHHHHHHHHHHHHHH
T ss_pred CCCCCeeeE--CCCch-hHHHHHHHHHHHHHH
Confidence 898877773 57883 333333445444333
No 2
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=23.82 E-value=1e+02 Score=18.53 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=13.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q psy8147 19 LWDFVIIPLSIYLILGLVFLF 39 (197)
Q Consensus 19 l~~FVL~Pl~v~L~iG~~fL~ 39 (197)
....+..-..+++++|+-||-
T Consensus 9 alt~i~gl~vif~~lg~tfly 29 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLY 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEE
Confidence 344555556677788877764
No 3
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=19.84 E-value=69 Score=23.79 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=21.5
Q ss_pred cchhHHHHHHHHHHHHHHHH--HHHHHHH
Q psy8147 58 KTDKLEKLMIRICIFSVLYT--VPAVLVI 84 (197)
Q Consensus 58 ~~~KL~klm~RIGiFs~ly~--vp~~~~i 84 (197)
.-++.++.+.|+|+|-++|. +|.-++|
T Consensus 78 rl~~~~r~iLrla~yEll~~~~iP~~vaI 106 (141)
T 3d3b_A 78 ELGQVEKAVLRIALYELSKRSDVPYKVAI 106 (141)
T ss_dssp CCCHHHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHhCCCCCchhhH
Confidence 34567889999999999996 7876654
No 4
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=17.64 E-value=58 Score=24.28 Aligned_cols=26 Identities=15% Similarity=0.557 Sum_probs=20.7
Q ss_pred chhHHHHHHHHHHHHHHHH--HHHHHHH
Q psy8147 59 TDKLEKLMIRICIFSVLYT--VPAVLVI 84 (197)
Q Consensus 59 ~~KL~klm~RIGiFs~ly~--vp~~~~i 84 (197)
-++.++.+.|+|+|-++|. +|.-++|
T Consensus 77 l~~~~r~iLrla~yEl~~~~~iP~~vaI 104 (142)
T 1tzv_A 77 LSVVDRNVLRLATYELLFEKDIPIEVTI 104 (142)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCchhHH
Confidence 3457889999999999996 7866654
No 5
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=17.59 E-value=3.8e+02 Score=22.41 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy8147 75 LYTVPAVLVIVCYLY 89 (197)
Q Consensus 75 ly~vp~~~~i~c~~Y 89 (197)
+...|.+..+.+..|
T Consensus 320 ~~~~p~~~~i~n~~~ 334 (347)
T 3rhw_A 320 RALFPVLFFVFNILY 334 (347)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 335555555555554
No 6
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=15.54 E-value=3.9e+02 Score=22.24 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8147 68 RICIFSVLYTVPAVLVIVCYLYEFV 92 (197)
Q Consensus 68 RIGiFs~ly~vp~~~~i~c~~YE~~ 92 (197)
.+..+.+.|++|.++++.||..-+.
T Consensus 198 ~~~~~~~~~~ip~~ii~~~y~~i~~ 222 (481)
T 3pbl_A 198 VIYSSVVSFYLPFGVTVLVYARIYV 222 (481)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677889999999998876543
No 7
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=15.52 E-value=1.1e+02 Score=21.49 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8147 25 IPLSIYLILGLVFLFTGFISLLRIRTI 51 (197)
Q Consensus 25 ~Pl~v~L~iG~~fL~~G~~sL~rIR~~ 51 (197)
.|+--|+.++......|+..+.. |++
T Consensus 2 ~~~~~~~~~~~~lf~iGl~g~~~-r~~ 27 (100)
T 3rko_K 2 IPLQHGLILAAILFVLGLTGLVI-RRN 27 (100)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-CCB
T ss_pred cchHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 36677888899999999998887 654
No 8
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=13.76 E-value=4.7e+02 Score=23.39 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------hhhhhhccCC---------Cc--chhHHHHHHHHHHHHHHHHHHH
Q psy8147 26 PLSIYLILGLVFLFTGFISLL------RIRTIMKHDG---------TK--TDKLEKLMIRICIFSVLYTVPA 80 (197)
Q Consensus 26 Pl~v~L~iG~~fL~~G~~sL~------rIR~~~k~~~---------~~--~~KL~klm~RIGiFs~ly~vp~ 80 (197)
|+-..+.+.++++++=|++-+ .+-+.+|++| ++ .+.|+|.+.|+.+++.+|+...
T Consensus 317 ~~y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~~IpGiRpG~~tt~~yL~~vi~rit~~Ga~~l~~i 388 (436)
T 1rh5_A 317 IVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFL 388 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCCcCCCcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444454433 2334566553 33 3568999999999998776533
No 9
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=13.59 E-value=84 Score=23.95 Aligned_cols=26 Identities=19% Similarity=0.583 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHHH--HHHHHHH
Q psy8147 59 TDKLEKLMIRICIFSVLYT--VPAVLVI 84 (197)
Q Consensus 59 ~~KL~klm~RIGiFs~ly~--vp~~~~i 84 (197)
-++.++.+.|+|+|-++|. +|.-++|
T Consensus 85 l~~~~r~iLrla~yel~~~~~iP~~v~I 112 (156)
T 1eyv_A 85 LPAVDRAILRVSVWELLHAADVPEPVVV 112 (156)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCchhHH
Confidence 3456789999999999996 7866654
No 10
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=13.00 E-value=1.6e+02 Score=18.35 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=19.7
Q ss_pred ecCchhhHhHHHHHHHHHHHHHHHHH
Q psy8147 12 GIWNRQALWDFVIIPLSIYLILGLVF 37 (197)
Q Consensus 12 G~~n~~~l~~FVL~Pl~v~L~iG~~f 37 (197)
|..|..+..+++..-+.+.++-|++|
T Consensus 15 G~~Dm~si~~~IVGaLvil~VAGLiy 40 (46)
T 1pfi_A 15 GQGDMKAIGGYIVGALVILAVAGLIY 40 (46)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888888888765
Done!