Query psy8147
Match_columns 197
No_of_seqs 105 out of 221
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 19:49:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8147.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8147hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2csba4 a.60.2.4 (A:465-519) T 27.1 12 0.00086 22.4 1.3 28 41-74 2-29 (55)
2 d1rh5a_ f.41.1.1 (A:) Preprote 24.1 77 0.0056 26.1 6.6 34 47-80 343-387 (422)
3 d2axth1 f.23.33.1 (H:2-65) Pho 13.7 82 0.006 19.6 3.2 16 69-84 30-45 (64)
4 d1u19a_ f.13.1.2 (A:) Rhodopsi 13.6 2.2E+02 0.016 20.5 11.1 11 163-173 303-313 (348)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 10.7 99 0.0072 17.0 2.6 11 19-29 11-21 (36)
6 d2iuba2 f.17.3.1 (A:286-349) M 9.6 1.3E+02 0.0092 17.8 3.2 23 61-83 1-23 (64)
7 d2erla_ a.10.1.1 (A:) ER-1 {Eu 9.2 47 0.0034 18.4 0.7 12 84-95 26-37 (40)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 8.6 1.5E+02 0.011 15.3 3.0 22 74-95 4-25 (30)
9 d1tzva_ a.79.1.1 (A:) Antiterm 7.8 85 0.0062 21.1 1.9 27 59-85 77-105 (141)
10 d1ey1a_ a.79.1.1 (A:) Antiterm 7.3 76 0.0055 21.3 1.4 29 57-85 75-105 (139)
No 1
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=27.09 E-value=12 Score=22.41 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=21.3
Q ss_pred HHHHHHhhhhhhccCCCcchhHHHHHHHHHHHHH
Q psy8147 41 GFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSV 74 (197)
Q Consensus 41 G~~sL~rIR~~~k~~~~~~~KL~klm~RIGiFs~ 74 (197)
|+.+|+.||.+ +.++-|+++.|.|=+|-
T Consensus 2 gyaslisirgi------dreraerllkkyggysk 29 (55)
T d2csba4 2 GYASLISIRGI------DRERAERLLKKYGGYSK 29 (55)
T ss_dssp THHHHHTSTTC------CHHHHHHHHHHHTSHHH
T ss_pred Cccceeeeecc------cHHHHHHHHHHhcChhH
Confidence 67788888764 55678899999887763
No 2
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=24.08 E-value=77 Score=26.08 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=22.6
Q ss_pred hhhhhhccCC---------Ccc-hh-HHHHHHHHHHHHHHHHHHH
Q psy8147 47 RIRTIMKHDG---------TKT-DK-LEKLMIRICIFSVLYTVPA 80 (197)
Q Consensus 47 rIR~~~k~~~---------~~~-~K-L~klm~RIGiFs~ly~vp~ 80 (197)
++-+.+|++| ++| +| |+|.+.|+..++.+|+...
T Consensus 343 ~iAe~lkk~g~~IpGiRpG~~T~~~~L~~vi~rit~~Ga~~l~~i 387 (422)
T d1rh5a_ 343 SMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFL 387 (422)
T ss_dssp HHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666653 345 67 9999999999998877543
No 3
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.70 E-value=82 Score=19.56 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8147 69 ICIFSVLYTVPAVLVI 84 (197)
Q Consensus 69 IGiFs~ly~vp~~~~i 84 (197)
||+|-.++.++.++.+
T Consensus 30 Mgv~m~Lf~vfl~iiL 45 (64)
T d2axth1 30 MAVFMGLFLVFLLIIL 45 (64)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6888888888776654
No 4
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.59 E-value=2.2e+02 Score=20.49 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=4.8
Q ss_pred cceeeeccchH
Q psy8147 163 SSFWIWSPKTL 173 (197)
Q Consensus 163 ~~~Wiws~kT~ 173 (197)
..+-.+..|.+
T Consensus 303 PiIY~~~~~~f 313 (348)
T d1u19a_ 303 PVIYIMMNKQF 313 (348)
T ss_dssp HHHHHHTCHHH
T ss_pred HHHHHhcCHHH
Confidence 33444544443
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.70 E-value=99 Score=17.02 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=5.5
Q ss_pred HhHHHHHHHHH
Q psy8147 19 LWDFVIIPLSI 29 (197)
Q Consensus 19 l~~FVL~Pl~v 29 (197)
-..|+|+|-..
T Consensus 11 t~LFilvPt~F 21 (36)
T d2axtm1 11 TALFVLVPSVF 21 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34456666443
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=9.64 E-value=1.3e+02 Score=17.77 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy8147 61 KLEKLMIRICIFSVLYTVPAVLV 83 (197)
Q Consensus 61 KL~klm~RIGiFs~ly~vp~~~~ 83 (197)
|..+.|.++-+.+++++-|.+++
T Consensus 1 r~N~~mk~lT~it~iflP~t~i~ 23 (64)
T d2iuba2 1 KTNEVMKVLTIIATIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888877776654
No 7
>d2erla_ a.10.1.1 (A:) ER-1 {Euplotes raikovi [TaxId: 5938]}
Probab=9.20 E-value=47 Score=18.44 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=8.4
Q ss_pred HHHHHHHhhchh
Q psy8147 84 IVCYLYEFVYID 95 (197)
Q Consensus 84 i~c~~YE~~~~~ 95 (197)
-+||+|-|+|-+
T Consensus 26 tgcymyiysncp 37 (40)
T d2erla_ 26 TGCYMYIYSNCP 37 (40)
T ss_dssp HHHHHHHHHHST
T ss_pred cceEEEeecCCC
Confidence 368888877644
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.60 E-value=1.5e+02 Score=15.31 Aligned_cols=22 Identities=9% Similarity=0.422 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhhchh
Q psy8147 74 VLYTVPAVLVIVCYLYEFVYID 95 (197)
Q Consensus 74 ~ly~vp~~~~i~c~~YE~~~~~ 95 (197)
+-|+.-..+.|+..++.-+.|+
T Consensus 4 i~yv~ifac~i~lfffaiffre 25 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAIFFRE 25 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC
T ss_pred eehHHHHHHHHHHHHHHHHhcC
Confidence 4455555666666666655543
No 9
>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}
Probab=7.82 E-value=85 Score=21.06 Aligned_cols=27 Identities=15% Similarity=0.501 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy8147 59 TDKLEKLMIRICIFSVLYT--VPAVLVIV 85 (197)
Q Consensus 59 ~~KL~klm~RIGiFs~ly~--vp~~~~i~ 85 (197)
-+++++.+.|+|+|-++|. +|.-++|-
T Consensus 77 l~~~~~~iLr~a~~El~~~~~~p~~v~In 105 (141)
T d1tzva_ 77 LSVVDRNVLRLATYELLFEKDIPIEVTID 105 (141)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHH
Confidence 3567889999999999995 68766653
No 10
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]}
Probab=7.27 E-value=76 Score=21.34 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=21.5
Q ss_pred CcchhHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy8147 57 TKTDKLEKLMIRICIFSVLYT--VPAVLVIV 85 (197)
Q Consensus 57 ~~~~KL~klm~RIGiFs~ly~--vp~~~~i~ 85 (197)
...+++.+.+.|+|+|-++|. +|.-++|-
T Consensus 75 ~r~~~~~~~ILr~a~~El~~~~~~p~~viIn 105 (139)
T d1ey1a_ 75 EELGQVEKAVLRIALYELSKRSDVPYKVAIN 105 (139)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSSCCSHHHHH
T ss_pred HhcChHHHHHHHHHHHHHHHccCCCceehHH
Confidence 345577888999999999884 67666553
Done!