RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8147
(197 letters)
>gnl|CDD|216557 pfam01534, Frizzled, Frizzled/Smoothened family membrane region.
This family contains the membrane spanning region of
frizzled and smoothened receptors. This membrane region
is predicted to contain seven transmembrane alpha
helices. Proteins related to Drosophila frizzled are
receptors for Wnt (mediating the beta-catenin signalling
pathway), but also the planar cell polarity (PCP)
pathway and the Wnt/calcium pathway. The predominantly
alpha-helical Cys-rich ligand-binding region (CRD) of
Frizzled is both necessary and sufficient for Wnt
binding. The smoothened receptor mediates hedgehog
signalling.
Length = 328
Score = 207 bits (529), Expect = 6e-67
Identities = 89/182 (48%), Positives = 113/182 (62%), Gaps = 18/182 (9%)
Query: 3 DILTGVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKL 62
D L+G+C+VG N AL FV+ PL +YL++G FL GF+SL RIR+++K DGT T KL
Sbjct: 163 DELSGICFVGNLNLDALRGFVLAPLCLYLVIGTSFLLAGFVSLFRIRSVIKTDGTNTSKL 222
Query: 63 EKLMIRICIFSVLYTVPAVLVIVCYLYEFVYIDYWMLTWHVDMCSGTSSVSSLSKPMTSS 122
EKLM+RI +FS+LYTVPA++VI CY YEF D W +W +C
Sbjct: 223 EKLMVRIGVFSILYTVPALIVIACYFYEFANRDEWERSWRDCICCQ-------------- 268
Query: 123 YNNIYSIPCPMGDKRRHVGRKPQFQVFMLKYLMTLIVGITSSFWIWSPKTLTSWKEFFYK 182
YSIPCP DK +P VFMLKY M+L+VGITS W+WS KTL SW+ F +
Sbjct: 269 ----YSIPCPYKDKSGDPEARPPLAVFMLKYFMSLVVGITSGVWVWSKKTLESWRRFIRR 324
Query: 183 LK 184
L
Sbjct: 325 LC 326
>gnl|CDD|239587 cd03510, Rhizobitoxine-FADS-like, This CD includes the
dihydrorhizobitoxine fatty acid desaturase (RtxC)
characterized in Bradyrhizobium japonicum USDA110, and
other related proteins. Dihydrorhizobitoxine desaturase
is reported to be involved in the final step of
rhizobitoxine biosynthesis. This domain family appears
to be structurally related to the membrane fatty acid
desaturases and the alkane hydroxylases. They all share
in common extensive hydrophobic regions that would be
capable of spanning the membrane bilayer at least twice.
Comparison of sequences also reveals the existence of
three regions of conserved histidine cluster motifs that
contain eight histidine residues: HXXXH, HXX(X)HH, and
HXXHH. These histidine residues are reported to be
catalytically essential and proposed to be the ligands
for the iron atoms contained within homologs, stearoyl
CoA desaturase and alkane hydroxylase.
Length = 175
Score = 31.5 bits (72), Expect = 0.17
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 27 LSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTD 60
L++YL+L LV L T F + RIR I +H G D
Sbjct: 92 LALYLLLWLVPLLTVFPLIGRIREIAEHAGVPAD 125
>gnl|CDD|222043 pfam13314, DUF4083, Domain of unknown function (DUF4083). This
is a family of very short, approximately 60 residue,
proteins from Firmicutes, that are all putatively
annotated as being MutT/Nudix. However, the
characteristic Nudix motif of GX(5)EX(7)REUXEE is
absent.
Length = 58
Score = 26.6 bits (59), Expect = 2.0
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 19 LWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMK--HDGTKTDKLEKLM 66
L + + + I LI+ + FT FI L + K H KL++++
Sbjct: 3 LGTSIYLIVVIILIVLIGASFTLFIRRLLHTSAAKKQHSDPIEQKLDRII 52
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 425
Score = 28.9 bits (65), Expect = 2.1
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 124 NNIYSIPCPMG---DKRRHVGRKPQFQVFML 151
N Y +P PM + H FQ FM+
Sbjct: 134 FNAYVLPVPMMNIINGGAHADNNLDFQEFMI 164
>gnl|CDD|234038 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II
sporulation protein E (SpoIIE) is a multiple membrane
spanning protein with two separable functions. It plays
a role in the switch to polar cell division during
sporulation. By means of it protein phosphatase
activity, located in the C-terminal region, it activates
sigma-F. All proteins that score above the trusted
cutoff to this model are found in endospore-forming
Gram-positive bacteria. Surprisingly, a sequence from
the Cyanobacterium-like (and presumably
non-spore-forming) photosynthesizer Heliobacillus
mobilis is homologous, and scores between the trusted
and noise cutoffs [Cellular processes, Sporulation and
germination].
Length = 764
Score = 28.9 bits (65), Expect = 2.3
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 27/119 (22%)
Query: 24 IIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVPAVLV 83
I P L LV + +L+ TDK + V++ AV
Sbjct: 54 IQPKHSLKYLLLVAVIILLSYVLK---------NLTDK----KKTVVPPIVVFLEAAVYA 100
Query: 84 IVCYLYEFVY--IDYWMLTWHVDMCSGTSSVSSLSKPMTSSYNNIYSIPCPMGDKRRHV 140
I YL + +D+ + +SLS + +N YSIPC + +H+
Sbjct: 101 IFGYLQNKLVTPLDFILSIVE----------ASLSFVLYYIFN--YSIPCLKNGRTKHL 147
>gnl|CDD|220666 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F protein. This is
a family of conserved transmembrane proteins that appear
in humans to be expressed from a region upstream of the
FragileXF site and to be intimately linked with the
Fragile-X syndrome. Absence of TMEM185A does not
necessarily lead to developmental delay, but might in
combination with other, yet unknown, factors. Otherwise,
the lack of the TMEM185A protein is either disposable
(redundant) or its function can be complemented by the
highly similar chromosome 2 retro-pseudogene product,
TMEM185B.
Length = 226
Score = 27.7 bits (62), Expect = 3.2
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 20 WDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVP 79
W V IPL I L L + + ++ ++ IR + +++ + L I S+ +P
Sbjct: 139 WWVVFIPLWIVLGLAFLVVL--YLVIMSIRLLRENNLLVSQDERALASAIGYLSIFIVIP 196
Query: 80 AVLVIV 85
++ V
Sbjct: 197 MLVFQV 202
>gnl|CDD|111290 pfam02381, MraZ, MraZ protein. This small 70 amino acid domain is
found duplicated in a family of bacterial proteins.
These proteins may be DNA-binding transcription factors
(Pers. comm. A Andreeva & A Murzin).
Length = 72
Score = 26.1 bits (58), Expect = 3.7
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 157 LIVGITSSFWIWSPKTLTSWKEFFYKLK--PNSTQPSR 192
+ +G + IW W+++ K S + +R
Sbjct: 33 VTIGQDNCLEIWPRAE---WEQYEEKANEESFSAKDAR 67
>gnl|CDD|219562 pfam07766, LETM1, LETM1-like protein. Members of this family are
inner mitochondrial membrane proteins which play a role
in potassium and hydrogen ion exchange. Deletion of
LETM1 is thought to be involved in the development of
Wolf-Hirschhorn syndrome in humans.
Length = 268
Score = 27.7 bits (62), Expect = 4.3
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 22 FVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICI 71
F+I+P + L+ + LF + T T + EKL + +
Sbjct: 66 FIIVPFAELLLPIALKLFPNMLP--------STFWTATQREEKLKKLLKV 107
>gnl|CDD|239003 cd02048, neuroserpin, Neuroserpin is a inhibitory member of the
SERine Proteinase INhibitor (serpin) family that reacts
preferentially with tissue-type plasminogen activator
(tPA). It is located in neurons in regions of the brain
where tPA is also found, suggesting that neuroserpin is
the selective inhibitor of tPA in the central nervous
system (CNS). This subgroup corresponds to clade I of
the serpin superfamily.
Length = 388
Score = 27.5 bits (61), Expect = 5.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 26 PLSIYLILGLVFLFTGFISLLRIRTIMKHDGTK 58
PLS L LG+V L +L IR + +DG K
Sbjct: 28 PLSTALALGMVELGAKGSALKEIRHSLGYDGLK 60
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 27.2 bits (61), Expect = 7.5
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 23 VIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVPAVL 82
V+ L I L++G++ LF G + L ++ K L +L + + +L V
Sbjct: 442 VMTILIISLLIGVIHLFLGLL--LGFINNVRKGDYKDAFLAQLGWLLILLGILLIVLGGF 499
Query: 83 VIVCYLYEFVYIDYWML 99
+V L I +++
Sbjct: 500 GLVVGLGPLGLIGKYLI 516
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 26.9 bits (59), Expect = 8.5
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 93 YIDYWMLTWHVDMCSGTSSVSSLSKPMTSSYNNIYSIPCPMGDKRRHVGRKPQFQVFMLK 152
Y++ W+ W++D G + ++ + SYNN P+ D+R + R+ + +
Sbjct: 243 YVERWLRGWNID---GQEERAKVNVNLVRSYNN------PIIDERVELWREKGGKAAVED 293
Query: 153 YLMTLI 158
+L T I
Sbjct: 294 WLDTFI 299
>gnl|CDD|183670 PRK12671, PRK12671, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 120
Score = 25.8 bits (57), Expect = 9.0
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 19 LWDFVIIPLSIYLILGLVFLFTGFISLLRIRT 50
LW I ++ +L+LG G I L+R+++
Sbjct: 9 LW--AAILVAFFLVLGAGLTLIGTIGLVRLKS 38
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.141 0.460
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,057,134
Number of extensions: 922809
Number of successful extensions: 1670
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1655
Number of HSP's successfully gapped: 80
Length of query: 197
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 105
Effective length of database: 6,857,034
Effective search space: 719988570
Effective search space used: 719988570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.3 bits)