RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8147
         (197 letters)



>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
           protein, CBP40, metal binding protein; 3.00A {Physarum
           polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
          Length = 323

 Score = 29.4 bits (66), Expect = 0.65
 Identities = 5/28 (17%), Positives = 9/28 (32%)

Query: 41  GFISLLRIRTIMKHDGTKTDKLEKLMIR 68
           G +S    R      G     ++  + R
Sbjct: 203 GTLSRKEFREHFVRLGFDKKSVQDALFR 230


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 28.5 bits (63), Expect = 1.1
 Identities = 8/66 (12%), Positives = 17/66 (25%), Gaps = 10/66 (15%)

Query: 123 YNNI-YSIPCPMGDKRRHVGRKPQFQVFMLKYLMTLIVGITSSFWIWSPKTLTSWKEFFY 181
           + NI   +P         +  +          +  L          W   +   + +FF+
Sbjct: 171 FENIAIELP-----PNEILFSENNDMDNNNDGVDEL----NKKCTFWDAISKLYYVQFFF 221

Query: 182 KLKPNS 187
           K     
Sbjct: 222 KQAEQE 227


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.7 bits (61), Expect = 3.2
 Identities = 27/132 (20%), Positives = 43/132 (32%), Gaps = 23/132 (17%)

Query: 21  DFVI-IPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLM--IRICIFSVLYT 77
           D+++ IP+S  LI        G I L       K  G    +L   +         +   
Sbjct: 229 DYLLSIPISCPLI--------GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL--- 277

Query: 78  VPAVLVIVCYLYE-FVYIDYWMLTW--HVDM-CSGTSSVSSLS-KPMTSSYNNIYSIPCP 132
           V AV +     +E F       +T    + + C      +SL    +  S  N   +P P
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337

Query: 133 M----GDKRRHV 140
           M       +  V
Sbjct: 338 MLSISNLTQEQV 349


>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
           helix-loop-helix, calcium-binding, calmodulin
           superfamily, transferase, plant protein; NMR {Glycine
           max} SCOP: a.39.1.5
          Length = 188

 Score = 26.0 bits (58), Expect = 6.1
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 40  TGFISLLRIRTIMKHDGTKTDKLEKLMIR 68
           +G+I+L  I+   K  G     ++  MI+
Sbjct: 96  SGYITLDEIQQACKDFGLDDIHIDD-MIK 123


>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
           calmodulin-like domain, EF calcium binding protein,
           transferase; 2.00A {Arabidopsis thaliana}
          Length = 166

 Score = 25.6 bits (57), Expect = 8.2
 Identities = 5/29 (17%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 40  TGFISLLRIRTIMKHDGTKTDKLEKLMIR 68
           +G+I+   ++   +  G +  ++E+ ++R
Sbjct: 113 SGYITPDELQQACEEFGVEDVRIEE-LMR 140


>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
           sodium-selective ION C membrane, metal transport; HET:
           PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
          Length = 285

 Score = 26.2 bits (58), Expect = 8.4
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 13/81 (16%)

Query: 14  WNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFS 73
           W+   L+DF ++ +S+        +      L   R +               +R  + +
Sbjct: 94  WS---LFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQ----------MRKIVSA 140

Query: 74  VLYTVPAVLVIVCYLYEFVYI 94
           ++  +P +L ++  +  F YI
Sbjct: 141 LISVIPGMLSVIALMTLFFYI 161


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.141    0.460 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,064,277
Number of extensions: 169160
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 21
Length of query: 197
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 108
Effective length of database: 4,216,824
Effective search space: 455416992
Effective search space used: 455416992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.0 bits)