Query psy8148
Match_columns 390
No_of_seqs 427 out of 2184
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 19:49:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0775|consensus 100.0 4.5E-68 9.7E-73 499.1 15.0 181 144-324 56-236 (304)
2 KOG0775|consensus 100.0 8.2E-58 1.8E-62 429.8 9.5 154 4-157 55-223 (304)
3 KOG3802|consensus 99.3 1.2E-12 2.5E-17 130.8 5.3 149 162-379 200-354 (398)
4 KOG0488|consensus 99.2 7.7E-12 1.7E-16 123.7 2.2 66 314-382 170-235 (309)
5 KOG0487|consensus 99.1 1.5E-11 3.3E-16 120.5 1.7 73 307-382 225-298 (308)
6 KOG0842|consensus 99.1 2.6E-11 5.7E-16 118.8 2.9 68 313-383 150-217 (307)
7 KOG0843|consensus 99.1 2.8E-11 6E-16 109.3 2.5 65 315-382 101-165 (197)
8 KOG0489|consensus 99.1 1.3E-11 2.8E-16 119.6 0.2 64 316-382 159-222 (261)
9 KOG0850|consensus 99.1 3.3E-11 7.2E-16 112.5 1.8 63 315-380 121-183 (245)
10 KOG0490|consensus 99.1 7.2E-11 1.6E-15 110.7 3.6 112 266-377 62-211 (235)
11 PF00046 Homeobox: Homeobox do 99.0 9.8E-11 2.1E-15 87.1 1.8 54 267-320 3-56 (57)
12 KOG0494|consensus 99.0 1.2E-10 2.7E-15 110.2 2.2 67 313-382 138-204 (332)
13 KOG0484|consensus 99.0 5.1E-11 1.1E-15 98.6 -0.9 60 316-378 17-76 (125)
14 KOG0848|consensus 99.0 8.5E-11 1.8E-15 111.8 0.3 53 329-381 209-261 (317)
15 smart00389 HOX Homeodomain. DN 99.0 4.8E-10 1.1E-14 82.7 4.3 51 270-320 6-56 (56)
16 cd00086 homeodomain Homeodomai 99.0 3.6E-10 7.7E-15 83.9 3.5 54 269-322 5-58 (59)
17 PF00046 Homeobox: Homeobox do 99.0 8.1E-11 1.7E-15 87.5 -0.3 56 318-376 2-57 (57)
18 KOG0485|consensus 99.0 1.2E-10 2.5E-15 108.0 0.4 64 312-378 100-163 (268)
19 KOG2251|consensus 98.9 3.5E-10 7.6E-15 105.3 3.0 65 314-381 35-99 (228)
20 KOG0492|consensus 98.9 4.6E-10 1E-14 103.4 1.9 61 317-380 145-205 (246)
21 KOG0850|consensus 98.9 7.8E-10 1.7E-14 103.5 2.6 54 271-324 129-182 (245)
22 KOG0491|consensus 98.8 3.5E-10 7.5E-15 100.8 -0.9 67 313-382 97-163 (194)
23 smart00389 HOX Homeodomain. DN 98.8 1.5E-09 3.3E-14 80.0 2.3 53 320-375 4-56 (56)
24 cd00086 homeodomain Homeodomai 98.8 1.3E-09 2.7E-14 81.0 1.4 55 320-377 4-58 (59)
25 KOG2251|consensus 98.8 4E-09 8.8E-14 98.3 4.8 67 258-324 31-97 (228)
26 KOG0843|consensus 98.8 2.7E-09 5.8E-14 96.6 2.9 61 265-325 103-163 (197)
27 KOG0488|consensus 98.8 2.9E-09 6.4E-14 105.4 2.9 58 267-324 175-232 (309)
28 TIGR01565 homeo_ZF_HD homeobox 98.7 8.6E-09 1.9E-13 77.7 3.7 53 316-371 1-57 (58)
29 KOG0844|consensus 98.7 2.8E-09 6E-14 103.1 0.6 63 315-380 180-242 (408)
30 KOG0842|consensus 98.7 8.6E-09 1.9E-13 101.3 3.9 61 267-327 156-216 (307)
31 KOG0492|consensus 98.7 8.1E-09 1.7E-13 95.3 3.4 55 270-324 150-204 (246)
32 KOG0483|consensus 98.7 6.5E-09 1.4E-13 96.6 2.8 65 314-381 48-112 (198)
33 KOG0489|consensus 98.7 3.8E-09 8.2E-14 102.5 1.1 63 264-326 159-221 (261)
34 KOG0487|consensus 98.6 1.1E-08 2.3E-13 100.6 2.5 58 267-324 238-295 (308)
35 KOG0483|consensus 98.6 2.5E-08 5.3E-13 92.8 4.2 70 266-338 52-121 (198)
36 KOG0485|consensus 98.6 1.1E-08 2.4E-13 95.0 1.6 60 265-324 105-164 (268)
37 KOG0493|consensus 98.6 1.2E-08 2.5E-13 97.1 1.3 58 318-378 248-305 (342)
38 KOG0848|consensus 98.6 1.1E-08 2.3E-13 97.7 1.0 59 268-326 203-261 (317)
39 TIGR01565 homeo_ZF_HD homeobox 98.6 8E-08 1.7E-12 72.5 5.5 50 267-316 4-57 (58)
40 KOG0486|consensus 98.6 1.8E-08 3.9E-13 98.1 2.3 63 315-380 111-173 (351)
41 KOG0493|consensus 98.6 3.3E-08 7.2E-13 94.0 3.9 63 263-325 245-307 (342)
42 KOG0484|consensus 98.6 1.8E-08 4E-13 83.6 1.1 57 267-323 20-76 (125)
43 COG5576 Homeodomain-containing 98.5 3.8E-08 8.3E-13 88.5 2.7 53 328-380 60-112 (156)
44 KOG4577|consensus 98.5 1.8E-08 3.9E-13 96.9 0.5 67 318-387 169-235 (383)
45 COG5576 Homeodomain-containing 98.5 3.9E-08 8.5E-13 88.4 2.4 90 271-374 58-147 (156)
46 KOG4577|consensus 98.5 8.4E-08 1.8E-12 92.4 2.9 121 186-325 105-228 (383)
47 PF05920 Homeobox_KN: Homeobox 98.4 5E-08 1.1E-12 68.2 0.1 34 285-318 7-40 (40)
48 KOG3802|consensus 98.4 3.1E-07 6.8E-12 92.3 5.9 55 270-324 300-354 (398)
49 KOG0491|consensus 98.4 3.3E-08 7.1E-13 88.3 -1.3 62 266-327 102-163 (194)
50 KOG0847|consensus 98.4 9.8E-08 2.1E-12 88.8 0.7 62 314-378 165-226 (288)
51 KOG0486|consensus 98.3 2.3E-07 5E-12 90.5 2.9 62 266-327 114-175 (351)
52 KOG0494|consensus 98.3 3.7E-07 8E-12 86.9 3.7 59 268-326 145-203 (332)
53 KOG0844|consensus 98.1 1.1E-06 2.4E-11 85.4 2.6 56 267-322 184-239 (408)
54 KOG0774|consensus 98.1 2.2E-06 4.7E-11 81.8 3.6 66 263-328 187-255 (334)
55 KOG0490|consensus 98.1 1.7E-06 3.6E-11 81.2 2.6 62 314-378 58-119 (235)
56 PF05920 Homeobox_KN: Homeobox 98.1 5.7E-07 1.2E-11 62.9 -0.5 34 340-373 7-40 (40)
57 KOG0849|consensus 97.9 5.5E-06 1.2E-10 83.8 3.0 71 306-379 166-236 (354)
58 KOG0847|consensus 97.9 3.7E-06 8E-11 78.5 0.9 56 267-322 170-225 (288)
59 KOG1168|consensus 97.7 2.4E-05 5.1E-10 75.9 3.9 108 257-376 256-366 (385)
60 KOG0774|consensus 97.7 1.8E-05 3.9E-10 75.7 2.9 58 320-380 192-252 (334)
61 KOG0849|consensus 97.3 0.0002 4.4E-09 72.6 3.7 56 268-323 180-235 (354)
62 KOG2252|consensus 96.9 0.0011 2.5E-08 69.4 5.1 56 266-321 422-477 (558)
63 KOG1168|consensus 96.8 0.0011 2.3E-08 64.6 4.0 49 274-322 319-367 (385)
64 KOG0773|consensus 96.0 0.004 8.7E-08 62.5 2.8 54 270-323 245-301 (342)
65 PF11569 Homez: Homeodomain le 95.5 0.0086 1.9E-07 44.9 1.9 43 276-318 10-52 (56)
66 KOG2252|consensus 95.2 0.012 2.6E-07 62.0 2.7 54 318-374 422-475 (558)
67 KOG3623|consensus 95.0 0.03 6.5E-07 60.7 5.0 109 276-384 568-691 (1007)
68 KOG0773|consensus 94.3 0.029 6.4E-07 56.3 2.8 41 340-380 263-303 (342)
69 KOG1146|consensus 93.3 0.048 1E-06 62.7 2.3 63 316-381 903-965 (1406)
70 PF11569 Homez: Homeodomain le 92.8 0.022 4.8E-07 42.7 -0.8 42 332-373 11-52 (56)
71 KOG1146|consensus 75.3 1.8 3.9E-05 50.4 2.2 56 268-323 907-962 (1406)
72 KOG3623|consensus 64.6 3 6.6E-05 45.9 1.1 47 331-377 568-614 (1007)
73 PF14559 TPR_19: Tetratricopep 48.0 37 0.0008 24.7 4.4 65 161-227 1-65 (68)
74 COG3840 ThiQ ABC-type thiamine 46.6 31 0.00066 32.7 4.4 49 3-57 95-145 (231)
75 PF04218 CENP-B_N: CENP-B N-te 44.1 28 0.00061 25.4 3.1 41 271-316 7-47 (53)
76 KOG4414|consensus 39.3 51 0.0011 29.8 4.4 72 148-219 12-107 (197)
77 cd04755 Commd7 COMM_Domain con 38.8 1.6E+02 0.0035 27.3 7.9 98 148-245 6-113 (180)
78 KOG4414|consensus 37.2 49 0.0011 29.9 4.0 75 9-84 12-111 (197)
79 PF13443 HTH_26: Cro/C1-type H 34.2 36 0.00077 24.9 2.3 46 293-363 12-57 (63)
80 PF07035 Mic1: Colon cancer-as 33.7 68 0.0015 29.3 4.5 58 16-75 93-150 (167)
81 PF07035 Mic1: Colon cancer-as 32.3 3.9E+02 0.0086 24.4 10.7 106 31-180 13-118 (167)
82 PF14559 TPR_19: Tetratricopep 31.7 76 0.0016 22.9 3.8 66 22-89 1-66 (68)
83 PF04967 HTH_10: HTH DNA bindi 30.0 75 0.0016 23.5 3.4 41 271-311 1-43 (53)
84 PF06163 DUF977: Bacterial pro 29.9 40 0.00086 29.5 2.2 53 10-65 38-127 (127)
85 PF10075 PCI_Csn8: COP9 signal 28.4 25 0.00055 30.6 0.8 63 23-86 15-78 (143)
86 PF01710 HTH_Tnp_IS630: Transp 25.3 57 0.0012 27.7 2.4 72 293-367 20-92 (119)
87 PF04936 DUF658: Protein of un 25.2 76 0.0016 29.1 3.2 81 292-372 15-114 (186)
88 PF10668 Phage_terminase: Phag 24.6 40 0.00086 25.7 1.1 19 294-312 25-43 (60)
89 PF11791 Aconitase_B_N: Aconit 23.9 97 0.0021 28.1 3.6 38 143-180 13-53 (154)
90 COG0587 DnaE DNA polymerase II 20.6 71 0.0015 37.6 2.6 32 65-96 732-771 (1139)
No 1
>KOG0775|consensus
Probab=100.00 E-value=4.5e-68 Score=499.13 Aligned_cols=181 Identities=62% Similarity=1.112 Sum_probs=177.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCChhHHHHHHHcCCCccccccchhhhhhHHHHHHhhhcHHHHHHHHhcCCCCccchHHH
Q psy8148 144 NPNMSFTPEQIDCLCEAMQQSGDFDKLAMFLWSLPPQEAIRGQESVLRARAVVAYKRHAFHELYAILESHNFDSKYHAEL 223 (390)
Q Consensus 144 ~~~~~~~~~q~~~~c~~l~~~~~~~~l~~fl~~lp~~~~~~~~e~v~rAra~v~~h~~~f~el~~~L~~~~F~~~~h~~l 223 (390)
.+++.||+|||+||||+|+|+||+|||++|||+||+++.+.+||+||||||+|+||.|+|+|||+|||+|.|++++|++|
T Consensus 56 ~pt~~fS~eQvacvCe~L~q~Gd~erL~rFlwsLp~~~~~~~nEsvLkArA~vafH~gnf~eLY~iLE~h~Fs~~~h~~L 135 (304)
T KOG0775|consen 56 LPTFGFSEEQVACVCESLQQGGDIERLGRFLWSLPVCEELLKNESVLKARAVVAFHSGNFRELYHILENHKFSPHNHPKL 135 (304)
T ss_pred CCCcCCCHHHHHHHHHHHHhccCHHHHHHHHHcCchHHHHhhhHHHHHHHHHHHHhcccHHHHHHHHHhccCChhhhHHH
Confidence 38889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHhhhCCCCCcccccccccCCCCCCcccCCCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCC
Q psy8148 224 QQLWMRGHYKEHAKIRGRDLGAVDKYRIRKKFPLPKTIWDGEETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGL 303 (390)
Q Consensus 224 q~lw~~ahY~e~e~~rgrpL~~v~kyr~Rkk~p~P~ti~dge~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgL 303 (390)
|+||++|||.|+|+.||||||||+|||+|||+|+|+||||||+|+|||+++++.+|++||..++||++.+|++||+.|||
T Consensus 136 Q~lWl~AhY~EAek~RGR~LgaV~KYRvRrKfPlPrTIWDGEet~yCFKekSR~~LrewY~~~~YPsp~eKReLA~aTgL 215 (304)
T KOG0775|consen 136 QALWLKAHYKEAEKLRGRPLGAVDKYRVRRKFPLPRTIWDGEETVYCFKEKSRSLLREWYLQNPYPSPREKRELAEATGL 215 (304)
T ss_pred HHHHHHHHHHHHHHhcCCcCCccccceeeccCCCCCccccCceeeeehhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhcccccccccccCCCcch
Q psy8148 304 TLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 304 s~~QV~~WFqNRR~R~R~~~t 324 (390)
|.+||+|||||||+|+|....
T Consensus 216 t~tQVsNWFKNRRQRDRa~~a 236 (304)
T KOG0775|consen 216 TITQVSNWFKNRRQRDRAAAA 236 (304)
T ss_pred chhhhhhhhhhhhhhhhhccc
Confidence 999999999999999996543
No 2
>KOG0775|consensus
Probab=100.00 E-value=8.2e-58 Score=429.81 Aligned_cols=154 Identities=39% Similarity=0.701 Sum_probs=144.2
Q ss_pred CCCCCCCChhhHHHHHHHHhhcCChhhHHHHHhcCCCcccccCCchHHHHHHHHHhhcCChHHHHHHHhcCCCCCCChHH
Q psy8148 4 LNPNMSFTPEQIDCLCEAMQQSGDFDKLAMFLWSLPPQEAIRGQESVLRARAVVAYKRHAFHELYAILESHNFDSKYHAE 83 (390)
Q Consensus 4 ~~~~~~~~~~q~~~~c~~l~~~~~~~~l~~f~~slp~~~~~~~~e~~l~a~a~v~~~~~~~~ely~~l~~~~f~~~~h~~ 83 (390)
..|++.||+|||+||||+|+|+||||||+|||||||+++.+.+||+||||||+||||.|||+|||+|||+|.|++++|++
T Consensus 55 ~~pt~~fS~eQvacvCe~L~q~Gd~erL~rFlwsLp~~~~~~~nEsvLkArA~vafH~gnf~eLY~iLE~h~Fs~~~h~~ 134 (304)
T KOG0775|consen 55 ALPTFGFSEEQVACVCESLQQGGDIERLGRFLWSLPVCEELLKNESVLKARAVVAFHSGNFRELYHILENHKFSPHNHPK 134 (304)
T ss_pred cCCCcCCCHHHHHHHHHHHHhccCHHHHHHHHHcCchHHHHhhhHHHHHHHHHHHHhcccHHHHHHHHHhccCChhhhHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHhcCCCCCcc----ccCCCCe---ee--ecccccchhhhHHHH---HHHHHHhhh---hcCCCCCC
Q psy8148 84 LQQLWMRGHYKEHAKIRGRDLGYS----SDDSSPV---LY--ETNAHDFNKHYLEIQ---QKAQEYLNM---KKLNPNMS 148 (390)
Q Consensus 84 lq~~w~~ahy~eae~~rgr~lg~~----~~~~~~~---~~--~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~ 148 (390)
||+||++|||.||||+|||||||| +|+|+|+ || |+.++|||+..+.++ +..++||++ ++++....
T Consensus 135 LQ~lWl~AhY~EAek~RGR~LgaV~KYRvRrKfPlPrTIWDGEet~yCFKekSR~~LrewY~~~~YPsp~eKReLA~aTg 214 (304)
T KOG0775|consen 135 LQALWLKAHYKEAEKLRGRPLGAVDKYRVRRKFPLPRTIWDGEETVYCFKEKSRSLLREWYLQNPYPSPREKRELAEATG 214 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCcCCccccceeeccCCCCCccccCceeeeehhHhhHHHHHHHHhcCCCCChHHHHHHHHHhC
Confidence 999999999999999999999999 8999999 99 799999999876665 557999997 46778889
Q ss_pred CCHHHHHHH
Q psy8148 149 FTPEQIDCL 157 (390)
Q Consensus 149 ~~~~q~~~~ 157 (390)
+|+.||--.
T Consensus 215 Lt~tQVsNW 223 (304)
T KOG0775|consen 215 LTITQVSNW 223 (304)
T ss_pred Cchhhhhhh
Confidence 999999433
No 3
>KOG3802|consensus
Probab=99.32 E-value=1.2e-12 Score=130.81 Aligned_cols=149 Identities=21% Similarity=0.356 Sum_probs=119.7
Q ss_pred hhcCChhHHHHHHHcCCCccccccchhhhhhHHHHHHhhhcHHHHHHHHhcCCCCccchHHHHHHHHhhhhhHHHhhhCC
Q psy8148 162 QQSGDFDKLAMFLWSLPPQEAIRGQESVLRARAVVAYKRHAFHELYAILESHNFDSKYHAELQQLWMRGHYKEHAKIRGR 241 (390)
Q Consensus 162 ~~~~~~~~l~~fl~~lp~~~~~~~~e~v~rAra~v~~h~~~f~el~~~L~~~~F~~~~h~~lq~lw~~ahY~e~e~~rgr 241 (390)
.++.|+|.|..|-..+... |..+.|-+++-..+...|.+..||..
T Consensus 200 ed~~~leELEqFAK~FKqR------------RIkLGfTQaDVGlALG~lyGn~FSQT----------------------- 244 (398)
T KOG3802|consen 200 EDTPDLEELEQFAKTFKQR------------RIKLGFTQADVGLALGALYGNVFSQT----------------------- 244 (398)
T ss_pred ccccCHHHHHHHHHHHHhh------------eeccccchhHHHHHHHhhhCcccchh-----------------------
Confidence 3578899999999999886 88899999999999999999999777
Q ss_pred CCCcccccccccCCCCCCcccCCCccccccCHHH--HHHHHHHHhhCC----CCCHHHHHHHHHHhCCCchhcccccccc
Q psy8148 242 DLGAVDKYRIRKKFPLPKTIWDGEETVYCFKERS--RNALKECYDKNR----YPNPDEKRQLSEITGLTLTQVSNWFKNR 315 (390)
Q Consensus 242 pL~~v~kyr~Rkk~p~P~ti~dge~t~~~Fs~~q--~~~Le~~F~~n~----YPs~~ek~~LA~~tgLs~~QV~~WFqNR 315 (390)
|||+-|.-..+|++.. +-.|++|.+.-- -.+....+.++ =+.|
T Consensus 245 ------------------TIcRFEALqLSFKNMCKLKPLL~KWLeEAes~~~~~~~~~~e~i~-------------a~~R 293 (398)
T KOG3802|consen 245 ------------------TICRFEALQLSFKNMCKLKPLLEKWLEEAESRESTGSPNSIEKIG-------------AQSR 293 (398)
T ss_pred ------------------hhhHhHhhccCHHHHhhhHHHHHHHHHHHhcccccCCCCCHHHhh-------------cccc
Confidence 7888887778888866 567788865311 11111111111 1127
Q ss_pred cccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhh
Q psy8148 316 RQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 379 (390)
Q Consensus 316 R~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~ 379 (390)
|+|.|+++..... ..||+.|..|+.|+.+|+..||+.++|..+.|+|||+|||.|+|+...
T Consensus 294 kRKKRTSie~~vr---~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 294 KRKKRTSIEVNVR---GALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRITP 354 (398)
T ss_pred ccccccceeHHHH---HHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCCC
Confidence 7888888886666 999999999999999999999999999999999999999999999765
No 4
>KOG0488|consensus
Probab=99.17 E-value=7.7e-12 Score=123.70 Aligned_cols=66 Identities=26% Similarity=0.467 Sum_probs=61.1
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhc
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAK 382 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~ 382 (390)
.+++|.|+.|+..|+ ..||+.|++.+|.+..+|.+||..+||++.||++||||||+|||+......
T Consensus 170 kK~RksRTaFT~~Ql---~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~g~ 235 (309)
T KOG0488|consen 170 KKRRKSRTAFSDHQL---FELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAEGG 235 (309)
T ss_pred cccccchhhhhHHHH---HHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHhhh
Confidence 677888999998888 999999999999999999999999999999999999999999999876543
No 5
>KOG0487|consensus
Probab=99.12 E-value=1.5e-11 Score=120.49 Aligned_cols=73 Identities=25% Similarity=0.413 Sum_probs=63.7
Q ss_pred hcccccc-cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhc
Q psy8148 307 QVSNWFK-NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAK 382 (390)
Q Consensus 307 QV~~WFq-NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~ 382 (390)
...+|-. .+-+|.|.+-++.|+ .+||+.|--|.|.+.+.|-+|+..++|+++||+|||||||+|+||...+..
T Consensus 225 ~~~~~~~~~~~RKKRcPYTK~Qt---lELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~r 298 (308)
T KOG0487|consen 225 HLPNASSARRGRKKRCPYTKHQT---LELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRENR 298 (308)
T ss_pred CCcccccccccccccCCchHHHH---HHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhhh
Confidence 4557877 444556778899888 999999999999999999999999999999999999999999999875443
No 6
>KOG0842|consensus
Probab=99.11 E-value=2.6e-11 Score=118.78 Aligned_cols=68 Identities=26% Similarity=0.443 Sum_probs=61.9
Q ss_pred ccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhcc
Q psy8148 313 KNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAKN 383 (390)
Q Consensus 313 qNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~~ 383 (390)
+.+|+|.|..|+..|. .+||..|..++|.+..||+.||..++|+.+||||||||||.|.||..+....
T Consensus 150 ~~~kRKrRVLFSqAQV---~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~~ 217 (307)
T KOG0842|consen 150 KRKKRKRRVLFSQAQV---YELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKAL 217 (307)
T ss_pred cccccccccccchhHH---HHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhhh
Confidence 4678888999998887 9999999999999999999999999999999999999999999997755443
No 7
>KOG0843|consensus
Probab=99.11 E-value=2.8e-11 Score=109.27 Aligned_cols=65 Identities=34% Similarity=0.495 Sum_probs=59.2
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhc
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAK 382 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~ 382 (390)
|-+|.|+.|+..|+ ..||.+|+.++|....||+.||..++|++.||++||||||.|.|+.+.+.+
T Consensus 101 ~~kr~RT~ft~~Ql---~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~k 165 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQL---LKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQEDK 165 (197)
T ss_pred CCCccccccCHHHH---HHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHhh
Confidence 56677888888777 999999999999999999999999999999999999999999999877643
No 8
>KOG0489|consensus
Probab=99.10 E-value=1.3e-11 Score=119.61 Aligned_cols=64 Identities=23% Similarity=0.377 Sum_probs=58.6
Q ss_pred cccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhc
Q psy8148 316 RQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAK 382 (390)
Q Consensus 316 R~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~ 382 (390)
++|.|+.+++.|+ .+||+.|.-|+|.+...|.+||..+.|+++||||||||||+|+||..+...
T Consensus 159 ~kR~RtayT~~Ql---lELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~~ 222 (261)
T KOG0489|consen 159 SKRRRTAFTRYQL---LELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAKS 222 (261)
T ss_pred CCCCCcccchhhh---hhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcccc
Confidence 5778888998887 999999999999999999999999999999999999999999998665544
No 9
>KOG0850|consensus
Probab=99.08 E-value=3.3e-11 Score=112.54 Aligned_cols=63 Identities=29% Similarity=0.453 Sum_probs=55.2
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r 380 (390)
+.+|-||..+..|+ ..|.+.|++.+|.-..||.+||..+||+..||++||||||.|.||..+.
T Consensus 121 K~RKPRTIYSS~QL---qaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~ 183 (245)
T KOG0850|consen 121 KVRKPRTIYSSLQL---QALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQ 183 (245)
T ss_pred cccCCcccccHHHH---HHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhc
Confidence 44455666665555 9999999999999999999999999999999999999999999998773
No 10
>KOG0490|consensus
Probab=99.07 E-value=7.2e-11 Score=110.74 Aligned_cols=112 Identities=25% Similarity=0.422 Sum_probs=97.9
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch---------------------
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ--------------------- 324 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t--------------------- 324 (390)
+....|+..++..|+..|..++||+...++.||..+++++..|.+||+|+|++++....
T Consensus 62 r~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (235)
T KOG0490|consen 62 CARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEERPLPEGENLPDLSGTAPPSASR 141 (235)
T ss_pred ccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhccccccccCCCCCCCCCccccc
Confidence 34456888999999999999999999999999999999999999999999999875431
Q ss_pred -----------------hhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccch
Q psy8148 325 -----------------RSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 377 (390)
Q Consensus 325 -----------------~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~ 377 (390)
.....+...+...|..+++|+...+..|+..+|++...|++||+|+|.+.++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~ 211 (235)
T KOG0490|consen 142 DKLDKGPSNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKH 211 (235)
T ss_pred cccccCCCccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhh
Confidence 11123567888899999999999999999999999999999999999998864
No 11
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.02 E-value=9.8e-11 Score=87.08 Aligned_cols=54 Identities=35% Similarity=0.708 Sum_probs=50.4
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCC
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R 320 (390)
+...|+..++.+|+..|..++||+..++..||..+||+..+|.+||+|+|.+.|
T Consensus 3 ~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~k 56 (57)
T PF00046_consen 3 KRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEK 56 (57)
T ss_dssp SSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhC
Confidence 345789999999999999999999999999999999999999999999998865
No 12
>KOG0494|consensus
Probab=99.00 E-value=1.2e-10 Score=110.22 Aligned_cols=67 Identities=25% Similarity=0.439 Sum_probs=61.2
Q ss_pred ccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhc
Q psy8148 313 KNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAK 382 (390)
Q Consensus 313 qNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~ 382 (390)
+++|++.|+.|+..|+ ..||++|....||+...++-||.+++|.+..|+|||||||+||||..++..
T Consensus 138 k~kRRh~RTiFT~~Ql---e~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg 204 (332)
T KOG0494|consen 138 KKKRRHFRTIFTSYQL---EELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWG 204 (332)
T ss_pred ccccccccchhhHHHH---HHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcC
Confidence 4567778999998888 999999999999999999999999999999999999999999999776653
No 13
>KOG0484|consensus
Probab=98.99 E-value=5.1e-11 Score=98.63 Aligned_cols=60 Identities=25% Similarity=0.458 Sum_probs=54.0
Q ss_pred cccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 316 RQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 316 R~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
.+|-|+.|+..|+ .+|+..|....||+...+++||.++.|++..|++||||||+|++|+.
T Consensus 17 QRRIRTTFTS~QL---kELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQE 76 (125)
T KOG0484|consen 17 QRRIRTTFTSAQL---KELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQE 76 (125)
T ss_pred hhhhhhhhhHHHH---HHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHH
Confidence 4455677777666 99999999999999999999999999999999999999999999854
No 14
>KOG0848|consensus
Probab=98.98 E-value=8.5e-11 Score=111.81 Aligned_cols=53 Identities=30% Similarity=0.569 Sum_probs=49.5
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhh
Q psy8148 329 RSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRA 381 (390)
Q Consensus 329 ~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~ 381 (390)
.|+-+||+.|..++|+++..+.+||.-+||+++||++||||||+|+||..++.
T Consensus 209 hQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk 261 (317)
T KOG0848|consen 209 HQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKK 261 (317)
T ss_pred hhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHH
Confidence 35599999999999999999999999999999999999999999999987765
No 15
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=98.98 E-value=4.8e-10 Score=82.65 Aligned_cols=51 Identities=33% Similarity=0.645 Sum_probs=48.6
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCC
Q psy8148 270 CFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320 (390)
Q Consensus 270 ~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R 320 (390)
.|+..++.+|+.+|..++||+..++..||..+||+..||.+||+|+|.+.+
T Consensus 6 ~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 6 SFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 488999999999999999999999999999999999999999999998764
No 16
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=98.98 E-value=3.6e-10 Score=83.93 Aligned_cols=54 Identities=33% Similarity=0.610 Sum_probs=50.5
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 269 YCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 269 ~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
..|+..++.+|+.+|..++||+..++..||..+||+..+|.+||+|+|.+.+..
T Consensus 5 ~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 5 TRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred CcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence 468899999999999999999999999999999999999999999999987653
No 17
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=98.97 E-value=8.1e-11 Score=87.53 Aligned_cols=56 Identities=38% Similarity=0.729 Sum_probs=50.4
Q ss_pred cCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccc
Q psy8148 318 RDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 376 (390)
Q Consensus 318 R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk 376 (390)
|.|+.++..+. ..|+..|..++||+.++++.||..+||+..+|.+||+|+|.++|+
T Consensus 2 r~r~~~t~~q~---~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 2 RKRTRFTKEQL---KVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSHHHH---HHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHH---HHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 45666676666 999999999999999999999999999999999999999998874
No 18
>KOG0485|consensus
Probab=98.96 E-value=1.2e-10 Score=107.95 Aligned_cols=64 Identities=30% Similarity=0.438 Sum_probs=60.1
Q ss_pred cccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 312 FKNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 312 FqNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
=.+|++|-|+.|++.|. ..||..|+...|.+..++..||..+.|++.||++||||||.|||++-
T Consensus 100 g~~RKKktRTvFSraQV---~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~ 163 (268)
T KOG0485|consen 100 GDDRKKKTRTVFSRAQV---FQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQY 163 (268)
T ss_pred cccccccchhhhhHHHH---HHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHH
Confidence 35889999999999988 88999999999999999999999999999999999999999999965
No 19
>KOG2251|consensus
Probab=98.95 E-value=3.5e-10 Score=105.27 Aligned_cols=65 Identities=31% Similarity=0.519 Sum_probs=59.8
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhh
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRA 381 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~ 381 (390)
.|.+|+|+.|+..|+ .+|+..|.+.+||+...+++||.+++|.+.+|+|||+|||+|+|+++..+
T Consensus 35 RkqRRERTtFtr~Ql---evLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 35 RKQRRERTTFTRKQL---EVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred hhcccccceecHHHH---HHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 467788999998888 99999999999999999999999999999999999999999999977653
No 20
>KOG0492|consensus
Probab=98.90 E-value=4.6e-10 Score=103.43 Aligned_cols=61 Identities=31% Similarity=0.470 Sum_probs=55.6
Q ss_pred ccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhh
Q psy8148 317 QRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380 (390)
Q Consensus 317 ~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r 380 (390)
++-|++|+..|+ ..||+.|...+|.+..++.+++..+.|++.||++||||||+|.|+.++-
T Consensus 145 RkPRtPFTtqQL---laLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQea 205 (246)
T KOG0492|consen 145 RKPRTPFTTQQL---LALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQEA 205 (246)
T ss_pred CCCCCCCCHHHH---HHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHHH
Confidence 346788888777 9999999999999999999999999999999999999999999997643
No 21
>KOG0850|consensus
Probab=98.88 E-value=7.8e-10 Score=103.47 Aligned_cols=54 Identities=30% Similarity=0.517 Sum_probs=50.7
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 271 Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
|+.-|+..|...|++++|....||.+||..+|||.+||++||||||.|.|+...
T Consensus 129 YSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 129 YSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKK 182 (245)
T ss_pred ccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHh
Confidence 679999999999999999999999999999999999999999999999876544
No 22
>KOG0491|consensus
Probab=98.85 E-value=3.5e-10 Score=100.84 Aligned_cols=67 Identities=28% Similarity=0.553 Sum_probs=62.0
Q ss_pred ccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhc
Q psy8148 313 KNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAK 382 (390)
Q Consensus 313 qNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~ 382 (390)
..+|+|.|+.++..|+ ..|++.|+...|.+..++.+||..++|++.||+.||||||+|.||...+..
T Consensus 97 ~~~r~K~Rtvfs~~ql---~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 97 HCRRRKARTVFSDPQL---SGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HHHhhhhcccccCccc---cccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 5688899999998887 999999999999999999999999999999999999999999999776654
No 23
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=98.83 E-value=1.5e-09 Score=79.98 Aligned_cols=53 Identities=34% Similarity=0.594 Sum_probs=46.9
Q ss_pred CCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCcccccccccccccccc
Q psy8148 320 RTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 375 (390)
Q Consensus 320 R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~k 375 (390)
++.++..+. ..|+..|..++||+.+++..||..+|++..+|++||+|+|.+.+
T Consensus 4 r~~~~~~~~---~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 4 RTSFTPEQL---EELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCcCCHHHH---HHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 344555555 89999999999999999999999999999999999999998764
No 24
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=98.82 E-value=1.3e-09 Score=80.96 Aligned_cols=55 Identities=35% Similarity=0.590 Sum_probs=48.4
Q ss_pred CCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccch
Q psy8148 320 RTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 377 (390)
Q Consensus 320 R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~ 377 (390)
+..++..+. ..|+..|..++||+..++..||..+||+..+|++||+|+|.+.++.
T Consensus 4 r~~~~~~~~---~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 4 RTRFTPEQL---EELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred CCcCCHHHH---HHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence 344554455 8999999999999999999999999999999999999999998763
No 25
>KOG2251|consensus
Probab=98.81 E-value=4e-09 Score=98.26 Aligned_cols=67 Identities=25% Similarity=0.397 Sum_probs=58.7
Q ss_pred CCcccCCCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 258 PKTIWDGEETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 258 P~ti~dge~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
+.+.+...+-++.|+.+|+.+|+..|.++.||+...+++||.+++|.+.+|++||+|||.|+|....
T Consensus 31 ~~~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~ 97 (228)
T KOG2251|consen 31 SSGPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQ 97 (228)
T ss_pred CccchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhh
Confidence 3445555555667999999999999999999999999999999999999999999999999987544
No 26
>KOG0843|consensus
Probab=98.79 E-value=2.7e-09 Score=96.57 Aligned_cols=61 Identities=30% Similarity=0.488 Sum_probs=55.5
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchh
Q psy8148 265 EETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 325 (390)
Q Consensus 265 e~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~ 325 (390)
.++++.|+.+|+..|+..|..+.|-...+|+.||..++|+++||++||||||.|.|+....
T Consensus 103 kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e 163 (197)
T KOG0843|consen 103 KRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQE 163 (197)
T ss_pred CccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHH
Confidence 3456689999999999999999999999999999999999999999999999998876543
No 27
>KOG0488|consensus
Probab=98.77 E-value=2.9e-09 Score=105.43 Aligned_cols=58 Identities=26% Similarity=0.489 Sum_probs=54.0
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
.+..|++.|+..||..|++.+|.+..+|.+||..+|||..||+.||||||+|+|+...
T Consensus 175 sRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a 232 (309)
T KOG0488|consen 175 SRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTA 232 (309)
T ss_pred chhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHH
Confidence 3447999999999999999999999999999999999999999999999999998644
No 28
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=98.74 E-value=8.6e-09 Score=77.72 Aligned_cols=53 Identities=21% Similarity=0.405 Sum_probs=49.1
Q ss_pred cccCCCcchhhhhhhhhhhhhhhcCCCC----CCHHHHHHHHHhhCCCcccccccccccc
Q psy8148 316 RQRDRTPQQRSIQRSRNALKECYDKNRY----PNPDEKRQLSEITGLTLTQVSNWFKNRR 371 (390)
Q Consensus 316 R~R~R~~~t~~q~~q~~~Le~~F~~n~y----Ps~~er~eLA~~lgLs~~qVk~WFqNRR 371 (390)
++|.|+.++..|. ..|+..|+.++| |+..++.+||..+||++.+|++||+|.+
T Consensus 1 ~kR~RT~Ft~~Q~---~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQK---EKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHH---HHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 3677888998777 999999999999 9999999999999999999999999975
No 29
>KOG0844|consensus
Probab=98.71 E-value=2.8e-09 Score=103.14 Aligned_cols=63 Identities=24% Similarity=0.413 Sum_probs=57.6
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r 380 (390)
.-+|.|+.|++.|+ ..||+.|-+-.|-+...|.+||..++|++..|++||||||+|+|++..-
T Consensus 180 qmRRYRTAFTReQI---aRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRla 242 (408)
T KOG0844|consen 180 QMRRYRTAFTREQI---ARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 242 (408)
T ss_pred HHHHHHhhhhHHHH---HHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhhh
Confidence 34567899999998 9999999999999999999999999999999999999999999996543
No 30
>KOG0842|consensus
Probab=98.71 E-value=8.6e-09 Score=101.26 Aligned_cols=61 Identities=28% Similarity=0.454 Sum_probs=55.5
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchhhh
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSI 327 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q 327 (390)
.+--|+..|..+||..|...+|.+..||+.||..+.||++||++||||||-|.|+......
T Consensus 156 rRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 156 RRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred cccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 3457999999999999999999999999999999999999999999999999988765443
No 31
>KOG0492|consensus
Probab=98.71 E-value=8.1e-09 Score=95.32 Aligned_cols=55 Identities=31% Similarity=0.471 Sum_probs=52.1
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 270 CFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 270 ~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
-|+..|+-.|+..|...+|.++.++.+++..+.||.+||++||||||.|.|+...
T Consensus 150 PFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 150 PFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred CCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999887543
No 32
>KOG0483|consensus
Probab=98.71 E-value=6.5e-09 Score=96.64 Aligned_cols=65 Identities=25% Similarity=0.450 Sum_probs=55.3
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhh
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRA 381 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~ 381 (390)
+.....+..++..|. ..|+..|+...+..+..+..||..+||+++||.+||||||+|||.++.-.
T Consensus 48 ~~~~~kk~Rlt~eQ~---~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~ 112 (198)
T KOG0483|consen 48 SKGKGKKRRLTSEQV---KFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEK 112 (198)
T ss_pred cccccccccccHHHH---HHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhh
Confidence 334455555666666 99999999999999999999999999999999999999999999966443
No 33
>KOG0489|consensus
Probab=98.70 E-value=3.8e-09 Score=102.47 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=57.5
Q ss_pred CCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchhh
Q psy8148 264 GEETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRS 326 (390)
Q Consensus 264 ge~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~ 326 (390)
..+++..|+..|+..|+..|..|.|.+...|.++|..+.||++||+|||||||+|+|+.....
T Consensus 159 ~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~ 221 (261)
T KOG0489|consen 159 SKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAK 221 (261)
T ss_pred CCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Confidence 446777899999999999999999999999999999999999999999999999999765543
No 34
>KOG0487|consensus
Probab=98.65 E-value=1.1e-08 Score=100.58 Aligned_cols=58 Identities=24% Similarity=0.395 Sum_probs=53.0
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
++--++.-|+..||..|.-|.|.+.+.|.+|+..++||.+||++||||||+|.|+...
T Consensus 238 KRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~r 295 (308)
T KOG0487|consen 238 KRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNR 295 (308)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhh
Confidence 3445678899999999999999999999999999999999999999999999998763
No 35
>KOG0483|consensus
Probab=98.63 E-value=2.5e-08 Score=92.79 Aligned_cols=70 Identities=26% Similarity=0.402 Sum_probs=61.1
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchhhhhhhhhhhhhhh
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQRSRNALKECY 338 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q~~q~~~Le~~F 338 (390)
.....|+.+|...|+..|..+.+..+..|..||..+||.+.||.+||||||+|+|+.....+. ..|+..|
T Consensus 52 ~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~---~~Lk~~~ 121 (198)
T KOG0483|consen 52 GKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDY---ESLKRQL 121 (198)
T ss_pred cccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhH---HHHHHHH
Confidence 344578999999999999999999999999999999999999999999999999998776655 4455544
No 36
>KOG0485|consensus
Probab=98.62 E-value=1.1e-08 Score=94.98 Aligned_cols=60 Identities=28% Similarity=0.419 Sum_probs=56.4
Q ss_pred CccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 265 EETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 265 e~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
++|+++|+..|...|+..|+...|.+..+|..||..+.||++||++||||||.|+|+...
T Consensus 105 KktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~a 164 (268)
T KOG0485|consen 105 KKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYA 164 (268)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHh
Confidence 357889999999999999999999999999999999999999999999999999987655
No 37
>KOG0493|consensus
Probab=98.61 E-value=1.2e-08 Score=97.06 Aligned_cols=58 Identities=28% Similarity=0.514 Sum_probs=51.1
Q ss_pred cCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 318 RDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 318 R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
|.|+.|+..|+ ..|+..|..|.|.+...+.+||.+++|.+.||++||||+|+|.||..
T Consensus 248 RPRTAFtaeQL---~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 248 RPRTAFTAEQL---QRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred CccccccHHHH---HHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhcc
Confidence 34555665555 99999999999999999999999999999999999999999999843
No 38
>KOG0848|consensus
Probab=98.60 E-value=1.1e-08 Score=97.66 Aligned_cols=59 Identities=27% Similarity=0.541 Sum_probs=54.9
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchhh
Q psy8148 268 VYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRS 326 (390)
Q Consensus 268 ~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~ 326 (390)
+.++++-||-+|++.|..++|.++..|.+||.-+|||++||++||||||.|+|+...+.
T Consensus 203 RvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk 261 (317)
T KOG0848|consen 203 RVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKK 261 (317)
T ss_pred eEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999999999999999876655
No 39
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=98.60 E-value=8e-08 Score=72.49 Aligned_cols=50 Identities=18% Similarity=0.374 Sum_probs=47.1
Q ss_pred cccccCHHHHHHHHHHHhhCCC----CCHHHHHHHHHHhCCCchhccccccccc
Q psy8148 267 TVYCFKERSRNALKECYDKNRY----PNPDEKRQLSEITGLTLTQVSNWFKNRR 316 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~Y----Ps~~ek~~LA~~tgLs~~QV~~WFqNRR 316 (390)
.++.|+.+|+..|+..|..++| |+..++.+||..+||+..+|++||+|.+
T Consensus 4 ~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 4 RRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 3457999999999999999999 9999999999999999999999999975
No 40
>KOG0486|consensus
Probab=98.59 E-value=1.8e-08 Score=98.11 Aligned_cols=63 Identities=30% Similarity=0.564 Sum_probs=54.8
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r 380 (390)
|.+|.|+-|+..|+ ++||..|.++.||+...+++||.-+++++..|+|||+|||+||+|....
T Consensus 111 KqrrQrthFtSqql---qele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN 173 (351)
T KOG0486|consen 111 KQRRQRTHFTSQQL---QELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERN 173 (351)
T ss_pred hhhhhhhhhHHHHH---HHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhh
Confidence 34455666776666 9999999999999999999999999999999999999999999985443
No 41
>KOG0493|consensus
Probab=98.59 E-value=3.3e-08 Score=94.01 Aligned_cols=63 Identities=22% Similarity=0.470 Sum_probs=57.6
Q ss_pred CCCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchh
Q psy8148 263 DGEETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 325 (390)
Q Consensus 263 dge~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~ 325 (390)
+.++.++.|+.+|+..|+..|+.|.|.+...|.+||.++||.+.||++||||+|.|.|++-..
T Consensus 245 eeKRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsTgs 307 (342)
T KOG0493|consen 245 EEKRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKSTGS 307 (342)
T ss_pred hhcCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhccCC
Confidence 455677899999999999999999999999999999999999999999999999998876443
No 42
>KOG0484|consensus
Probab=98.56 E-value=1.8e-08 Score=83.61 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=52.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
.+..|+..|+..|+..|..+.||++-.+++||....||+..|++||||||.|.|+..
T Consensus 20 IRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQE 76 (125)
T KOG0484|consen 20 IRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQE 76 (125)
T ss_pred hhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHH
Confidence 445799999999999999999999999999999999999999999999999987653
No 43
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=98.54 E-value=3.8e-08 Score=88.47 Aligned_cols=53 Identities=21% Similarity=0.454 Sum_probs=48.6
Q ss_pred hhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhh
Q psy8148 328 QRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380 (390)
Q Consensus 328 ~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r 380 (390)
..|+.+|+..|..+++|+..++..|+..++|+++.|++||||+|++.|+....
T Consensus 60 ~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~ 112 (156)
T COG5576 60 DEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSG 112 (156)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhccc
Confidence 44559999999999999999999999999999999999999999999886654
No 44
>KOG4577|consensus
Probab=98.53 E-value=1.8e-08 Score=96.93 Aligned_cols=67 Identities=30% Similarity=0.514 Sum_probs=54.6
Q ss_pred cCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhccCCCC
Q psy8148 318 RDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAKNRTFD 387 (390)
Q Consensus 318 R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~~~~~d 387 (390)
|.|+..+..|+ ..|+.+|..++.|..-.++.|+..+||..+.|++||||||+|+|+.++..-...|+
T Consensus 169 RPRTTItAKqL---ETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWg 235 (383)
T KOG4577|consen 169 RPRTTITAKQL---ETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWG 235 (383)
T ss_pred CCcceeeHHHH---HHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHH
Confidence 34555554455 99999999999999999999999999999999999999999999866544332443
No 45
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=98.53 E-value=3.9e-08 Score=88.40 Aligned_cols=90 Identities=21% Similarity=0.342 Sum_probs=73.0
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHH
Q psy8148 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKR 350 (390)
Q Consensus 271 Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~ 350 (390)
-+..|+.+|+..|..++||+...+..|+..++|++..|++||||+|++.|.... +....++.. +..
T Consensus 58 ~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~-------------~~~~~~~~~-e~~ 123 (156)
T COG5576 58 TTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRS-------------GKVEQRPGE-EEA 123 (156)
T ss_pred chHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcc-------------cchhccccc-ccc
Confidence 458899999999999999999999999999999999999999999998876533 222333444 555
Q ss_pred HHHHhhCCCccccccccccccccc
Q psy8148 351 QLSEITGLTLTQVSNWFKNRRQRD 374 (390)
Q Consensus 351 eLA~~lgLs~~qVk~WFqNRR~K~ 374 (390)
.++....++..++.+|+.+...+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~s~~ 147 (156)
T COG5576 124 DLAKIGSLSTGQISIIETLEFSRT 147 (156)
T ss_pred cccccccccccchhhHHhhhcccc
Confidence 667777788888899988766653
No 46
>KOG4577|consensus
Probab=98.46 E-value=8.4e-08 Score=92.41 Aligned_cols=121 Identities=25% Similarity=0.415 Sum_probs=87.3
Q ss_pred chhhhhhHHHHHHhhhcHHHHH--HHHh-cCCCCccchHHHHHHHHhhhhhHHHhhhCCCCCcccccccccCCCCCCccc
Q psy8148 186 QESVLRARAVVAYKRHAFHELY--AILE-SHNFDSKYHAELQQLWMRGHYKEHAKIRGRDLGAVDKYRIRKKFPLPKTIW 262 (390)
Q Consensus 186 ~e~v~rAra~v~~h~~~f~el~--~~L~-~~~F~~~~h~~lq~lw~~ahY~e~e~~rgrpL~~v~kyr~Rkk~p~P~ti~ 262 (390)
...|-||...| ||-+||..+. +-|. +..|--- +-..|-.+..|..|...-.-.|.. -..+..|+|
T Consensus 105 tqVVRkAqd~V-YHl~CF~C~iC~R~L~TGdEFYLm---eD~rLvCK~DYE~Ak~k~~~~l~g------d~~nKRPRT-- 172 (383)
T KOG4577|consen 105 TQVVRKAQDFV-YHLHCFACFICKRQLATGDEFYLM---EDARLVCKDDYETAKQKHCNELEG------DASNKRPRT-- 172 (383)
T ss_pred HHHHHHhhcce-eehhhhhhHhhhcccccCCeeEEe---ccceeehhhhHHHHHhcccccccc------ccccCCCcc--
Confidence 45667799999 9999999763 2222 3344222 235677788888775533222222 111222333
Q ss_pred CCCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchh
Q psy8148 263 DGEETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 325 (390)
Q Consensus 263 dge~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~ 325 (390)
..+.+|++.|+..|+..+-|....|++|+..|||..+.|++||||||+|.|+....
T Consensus 173 -------TItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKD 228 (383)
T KOG4577|consen 173 -------TITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKD 228 (383)
T ss_pred -------eeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhh
Confidence 46789999999999999999999999999999999999999999999998876543
No 47
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=98.41 E-value=5e-08 Score=68.22 Aligned_cols=34 Identities=50% Similarity=0.908 Sum_probs=29.3
Q ss_pred hCCCCCHHHHHHHHHHhCCCchhccccccccccc
Q psy8148 285 KNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 318 (390)
Q Consensus 285 ~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R 318 (390)
.+|||+.++|..||..||++..||.+||.|.|+|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 5899999999999999999999999999998875
No 48
>KOG3802|consensus
Probab=98.41 E-value=3.1e-07 Score=92.34 Aligned_cols=55 Identities=29% Similarity=0.445 Sum_probs=51.4
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 270 CFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 270 ~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
++....+..|+..|.+|+-|+..+...||+.++|..+.|++||+|||+|.|+...
T Consensus 300 Sie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 300 SIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRITP 354 (398)
T ss_pred ceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCCC
Confidence 5667789999999999999999999999999999999999999999999998755
No 49
>KOG0491|consensus
Probab=98.40 E-value=3.3e-08 Score=88.35 Aligned_cols=62 Identities=26% Similarity=0.549 Sum_probs=55.7
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchhhh
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSI 327 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q 327 (390)
+.+.+|+..|+..|++.|+...|.+..++.+||..++|+++||+.||+|||+|.|+.....+
T Consensus 102 K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 102 KARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred hhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 45567999999999999999999999999999999999999999999999999887655443
No 50
>KOG0847|consensus
Probab=98.36 E-value=9.8e-08 Score=88.83 Aligned_cols=62 Identities=24% Similarity=0.441 Sum_probs=54.6
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
.+|...|..++-.++ ..|+..|+..+|+-..++.+||..+|++..+|++||||||.||||+.
T Consensus 165 G~rk~srPTf~g~qi---~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkh 226 (288)
T KOG0847|consen 165 GQRKQSRPTFTGHQI---YQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKH 226 (288)
T ss_pred ccccccCCCccchhh---hhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhh
Confidence 345555566777777 99999999999999999999999999999999999999999999864
No 51
>KOG0486|consensus
Probab=98.34 E-value=2.3e-07 Score=90.46 Aligned_cols=62 Identities=27% Similarity=0.514 Sum_probs=56.9
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchhhh
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSI 327 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q 327 (390)
+.+..|+..|+..|+.+|.+|.||+...++++|.-++||+..|++||+|||.|+|+.....+
T Consensus 114 rQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrErN~~ 175 (351)
T KOG0486|consen 114 RQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQQ 175 (351)
T ss_pred hhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhhhhHH
Confidence 45568999999999999999999999999999999999999999999999999998765444
No 52
>KOG0494|consensus
Probab=98.32 E-value=3.7e-07 Score=86.93 Aligned_cols=59 Identities=24% Similarity=0.467 Sum_probs=54.9
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchhh
Q psy8148 268 VYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRS 326 (390)
Q Consensus 268 ~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~ 326 (390)
++.|+.-|+..|++.|+...||+...|+.||..|+|.+..|.+||+|||.|+|+.....
T Consensus 145 RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~w 203 (332)
T KOG0494|consen 145 RTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRW 203 (332)
T ss_pred cchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhc
Confidence 45699999999999999999999999999999999999999999999999999876543
No 53
>KOG0844|consensus
Probab=98.14 E-value=1.1e-06 Score=85.42 Aligned_cols=56 Identities=21% Similarity=0.417 Sum_probs=52.7
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
-++.|+.+|+..|++.|-+..|-+...|.+||..++|.++.|++||||||+|+|+.
T Consensus 184 YRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQ 239 (408)
T KOG0844|consen 184 YRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQ 239 (408)
T ss_pred HHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhh
Confidence 44589999999999999999999999999999999999999999999999999874
No 54
>KOG0774|consensus
Probab=98.10 E-value=2.2e-06 Score=81.81 Aligned_cols=66 Identities=29% Similarity=0.546 Sum_probs=57.4
Q ss_pred CCCccccccCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchhhhh
Q psy8148 263 DGEETVYCFKERSRNALKECYD---KNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQ 328 (390)
Q Consensus 263 dge~t~~~Fs~~q~~~Le~~F~---~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q~ 328 (390)
|..+++..|+.....+|.+||- .||||+.+.|++||...|++..||++||.|+|-|.++...+.+.
T Consensus 187 darRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~~k~~e 255 (334)
T KOG0774|consen 187 DARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNMGKNQE 255 (334)
T ss_pred HHHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhhhhhhh
Confidence 4555666898989999999995 69999999999999999999999999999999999887665443
No 55
>KOG0490|consensus
Probab=98.08 E-value=1.7e-06 Score=81.19 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=53.9
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
.++++.|+.++..+. .+|+.+|+..+||+...++.|+..+++++..|++||||+|+++++..
T Consensus 58 ~~~rr~rt~~~~~ql---~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~ 119 (235)
T KOG0490|consen 58 FSKRCARCKFTISQL---DELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEE 119 (235)
T ss_pred ccccccCCCCCcCHH---HHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhh
Confidence 344555666665555 99999999999999999999999999999999999999999999865
No 56
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=98.08 E-value=5.7e-07 Score=62.91 Aligned_cols=34 Identities=50% Similarity=0.908 Sum_probs=28.9
Q ss_pred CCCCCCHHHHHHHHHhhCCCcccccccccccccc
Q psy8148 340 KNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 373 (390)
Q Consensus 340 ~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K 373 (390)
.+|||+.+++.+|+..+|++..||.+||.|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 5799999999999999999999999999998864
No 57
>KOG0849|consensus
Probab=97.92 E-value=5.5e-06 Score=83.80 Aligned_cols=71 Identities=30% Similarity=0.517 Sum_probs=63.5
Q ss_pred hhcccccccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhh
Q psy8148 306 TQVSNWFKNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 379 (390)
Q Consensus 306 ~QV~~WFqNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~ 379 (390)
..-.+|.+.+++|.|+.++..|. ..|+++|+.++||+...++.|+..++++...|.+||+|||+++++...
T Consensus 166 ~~p~~~~~~~~rr~rtsft~~Q~---~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 166 EPPGYALQRGGRRNRTSFSPSQL---EALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred ccccccccccccccccccccchH---HHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccc
Confidence 34457777777778888998888 999999999999999999999999999999999999999999999763
No 58
>KOG0847|consensus
Probab=97.89 E-value=3.7e-06 Score=78.48 Aligned_cols=56 Identities=25% Similarity=0.441 Sum_probs=52.1
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
+.-.|+..|+..|+..|...+|+-..++.++|..+|++..||++||||||.|+|+.
T Consensus 170 srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKk 225 (288)
T KOG0847|consen 170 SRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKK 225 (288)
T ss_pred cCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhh
Confidence 44568899999999999999999999999999999999999999999999999864
No 59
>KOG1168|consensus
Probab=97.74 E-value=2.4e-05 Score=75.85 Aligned_cols=108 Identities=17% Similarity=0.246 Sum_probs=73.5
Q ss_pred CCCcccCCCccccccCHH--HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhccccccc-ccccCCCcchhhhhhhhhh
Q psy8148 257 LPKTIWDGEETVYCFKER--SRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKN-RRQRDRTPQQRSIQRSRNA 333 (390)
Q Consensus 257 ~P~ti~dge~t~~~Fs~~--q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqN-RR~R~R~~~t~~q~~q~~~ 333 (390)
...|||+-|--+.+.++. -..+|..|.++ .+-+.+-..+.-.+..-|-+ -++|.|++...... ..
T Consensus 256 SQSTICRFESLTLSHNNMiALKPILqaWLEe---------AE~a~keK~~~pd~~~l~~~~ekKRKRTSIAAPEK---Rs 323 (385)
T KOG1168|consen 256 SQSTICRFESLTLSHNNMIALKPILQAWLEE---------AEAAMKEKDTKPDINELLPGGEKKRKRTSIAAPEK---RS 323 (385)
T ss_pred cccceeeeeeeccccCcchhhhHHHHHHHHH---------HHHHHHhhccCCchhhccCccccccccccccCccc---cc
Confidence 356777766433333232 24566666432 22233333344434333333 35566666665555 78
Q ss_pred hhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccc
Q psy8148 334 LKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 376 (390)
Q Consensus 334 Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk 376 (390)
||..|...+.|+.+....+|+++.|....|++||+|+|+|-|+
T Consensus 324 LEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKR 366 (385)
T KOG1168|consen 324 LEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 366 (385)
T ss_pred HHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHH
Confidence 9999999999999999999999999999999999999999887
No 60
>KOG0774|consensus
Probab=97.74 E-value=1.8e-05 Score=75.68 Aligned_cols=58 Identities=31% Similarity=0.564 Sum_probs=48.6
Q ss_pred CCcchhhhhhhhhhhhhhh---cCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhh
Q psy8148 320 RTPQQRSIQRSRNALKECY---DKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380 (390)
Q Consensus 320 R~~~t~~q~~q~~~Le~~F---~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r 380 (390)
|+.|++... .+|..+| -.+|||+.+++++||.+.+++.+||.+||.|.|-+.+|...+
T Consensus 192 RRNFsK~aT---eiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~~k 252 (334)
T KOG0774|consen 192 RRNFSKQAT---EILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNMGK 252 (334)
T ss_pred hcccchhHH---HHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhhhh
Confidence 344555555 7788888 578999999999999999999999999999999999886543
No 61
>KOG0849|consensus
Probab=97.27 E-value=0.0002 Score=72.57 Aligned_cols=56 Identities=32% Similarity=0.611 Sum_probs=52.5
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 268 VYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 268 ~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
...|+..|...|+++|..++||+...++.||..+|++...|.+||+|+|.+.++..
T Consensus 180 rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 180 RTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred ccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhcc
Confidence 46799999999999999999999999999999999999999999999999887654
No 62
>KOG2252|consensus
Probab=96.90 E-value=0.0011 Score=69.43 Aligned_cols=56 Identities=23% Similarity=0.459 Sum_probs=52.3
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCC
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 321 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~ 321 (390)
+.+.+|++.|+..|...|+.+++|+.+..+.|+..+||..+.|.|||-|-|+|...
T Consensus 422 KPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRsl~ 477 (558)
T KOG2252|consen 422 KPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRSLD 477 (558)
T ss_pred CceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhccc
Confidence 45779999999999999999999999999999999999999999999999998644
No 63
>KOG1168|consensus
Probab=96.84 E-value=0.0011 Score=64.60 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 274 RSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 274 ~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
.....|+.+|...|-|+.+....+|+++.|....|++||.|.|+|.|+.
T Consensus 319 PEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm 367 (385)
T KOG1168|consen 319 PEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 367 (385)
T ss_pred cccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHh
Confidence 3367899999999999999999999999999999999999999998764
No 64
>KOG0773|consensus
Probab=96.04 E-value=0.004 Score=62.49 Aligned_cols=54 Identities=37% Similarity=0.518 Sum_probs=47.0
Q ss_pred ccCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 270 CFKERSRNALKECYD---KNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 270 ~Fs~~q~~~Le~~F~---~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
.+......+|+.|.. ..|||+..+|..|+..|||+..||.|||-|.|.|.-.+-
T Consensus 245 ~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~ 301 (342)
T KOG0773|consen 245 GLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPM 301 (342)
T ss_pred CCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCch
Confidence 566778889998854 469999999999999999999999999999998877653
No 65
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=95.46 E-value=0.0086 Score=44.86 Aligned_cols=43 Identities=23% Similarity=0.491 Sum_probs=31.6
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhccccccccccc
Q psy8148 276 RNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 318 (390)
Q Consensus 276 ~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R 318 (390)
...|+++|...++....+-..|..+++|+..||+.||..+...
T Consensus 10 ~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~~e 52 (56)
T PF11569_consen 10 IQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERMQE 52 (56)
T ss_dssp -HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS--
T ss_pred hHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhccc
Confidence 4569999999999999999999999999999999999876543
No 66
>KOG2252|consensus
Probab=95.23 E-value=0.012 Score=61.97 Aligned_cols=54 Identities=24% Similarity=0.421 Sum_probs=46.4
Q ss_pred cCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccc
Q psy8148 318 RDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRD 374 (390)
Q Consensus 318 R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~ 374 (390)
|-|..++..|. ..|...|..+++|+.+..+.|+..++|....|.|||-|-|.|.
T Consensus 422 KPRlVfTd~Qk---rTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 422 KPRLVFTDIQK---RTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred CceeeecHHHH---HHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 33555665554 8999999999999999999999999999999999999977774
No 67
>KOG3623|consensus
Probab=95.04 E-value=0.03 Score=60.73 Aligned_cols=109 Identities=18% Similarity=0.326 Sum_probs=78.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchhhh---------------hhhhhhhhhhhcC
Q psy8148 276 RNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSI---------------QRSRNALKECYDK 340 (390)
Q Consensus 276 ~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q---------------~~q~~~Le~~F~~ 340 (390)
..+|+.+|..|..|+..+-..+|...|++..-|+.||.+.+...+....... ..+-..|..+++.
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv~rsps~psg~~p~kv~sp~k~~dq~ql~~a~el 647 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSVERSPSQPSGERPVKVRSPIKEEDQQQLKQAYEL 647 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhhccCccCCCCCCCccccCCCCccchhhhHhhhhc
Confidence 6789999999999999999999999999999999999998876543221000 0111344555554
Q ss_pred CCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhccC
Q psy8148 341 NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAKNR 384 (390)
Q Consensus 341 n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~~~ 384 (390)
+-.++-.+-...+..+......|.+||.+|+...+...-...+.
T Consensus 648 q~s~~n~~~pl~~t~~~n~~pv~ev~dhsrsstpsp~pl~ltss 691 (1007)
T KOG3623|consen 648 QASPSNDEFPLIATRLQNDPPVVEVWDHSRSSTPSPMPLFLTSS 691 (1007)
T ss_pred ccCccCcccchhhhhccCCCcchhhcccCCCCCCCCCccccccc
Confidence 44455555555556677778888999999999888765444433
No 68
>KOG0773|consensus
Probab=94.33 E-value=0.029 Score=56.28 Aligned_cols=41 Identities=46% Similarity=0.658 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhh
Q psy8148 340 KNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380 (390)
Q Consensus 340 ~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r 380 (390)
..+||+..++..|+..+|++..||.+||.|.|.|..+....
T Consensus 263 ~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~~ 303 (342)
T KOG0773|consen 263 LHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMIE 303 (342)
T ss_pred cCCCCcchhccccchhcCCCcccCCchhhhcccccCCchHH
Confidence 36899999999999999999999999999999998776553
No 69
>KOG1146|consensus
Probab=93.25 E-value=0.048 Score=62.67 Aligned_cols=63 Identities=27% Similarity=0.494 Sum_probs=54.8
Q ss_pred cccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhh
Q psy8148 316 RQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRA 381 (390)
Q Consensus 316 R~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~ 381 (390)
|+..|+.++..++ ..+...|....+|..++.+.|....+++.+.|.+||+|-|.|.++.....
T Consensus 903 r~a~~~~~~d~ql---k~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~n~ 965 (1406)
T KOG1146|consen 903 RRAYRTQESDLQL---KIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKLNG 965 (1406)
T ss_pred hhhhccchhHHHH---HHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhhcc
Confidence 5556666666665 88899999999999999999999999999999999999999999977655
No 70
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=92.80 E-value=0.022 Score=42.69 Aligned_cols=42 Identities=24% Similarity=0.521 Sum_probs=30.7
Q ss_pred hhhhhhhcCCCCCCHHHHHHHHHhhCCCcccccccccccccc
Q psy8148 332 NALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 373 (390)
Q Consensus 332 ~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K 373 (390)
..|++.|.....+...+...|..+++|+..||+.||-.++..
T Consensus 11 ~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~~e 52 (56)
T PF11569_consen 11 QPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERMQE 52 (56)
T ss_dssp HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS--
T ss_pred HHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhccc
Confidence 458999999999999999999999999999999999766543
No 71
>KOG1146|consensus
Probab=75.26 E-value=1.8 Score=50.42 Aligned_cols=56 Identities=25% Similarity=0.457 Sum_probs=51.3
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 268 VYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 268 ~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
+..|+..++..+...|....||...+.+.|....++.+..|.+||+|-|.+.++..
T Consensus 907 ~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~ 962 (1406)
T KOG1146|consen 907 RTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAK 962 (1406)
T ss_pred ccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhh
Confidence 34678899999999999999999999999999999999999999999999987653
No 72
>KOG3623|consensus
Probab=64.59 E-value=3 Score=45.90 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=42.5
Q ss_pred hhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccch
Q psy8148 331 RNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 377 (390)
Q Consensus 331 ~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~ 377 (390)
+..|+..|..+..|+.++...++...|++...|+.||.++++.....
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv 614 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSV 614 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhh
Confidence 36788889999999999999999999999999999999999886653
No 73
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=48.04 E-value=37 Score=24.68 Aligned_cols=65 Identities=20% Similarity=0.158 Sum_probs=39.9
Q ss_pred HhhcCChhHHHHHHHcCCCccccccchhhhhhHHHHHHhhhcHHHHHHHHhcCCCCccchHHHHHHH
Q psy8148 161 MQQSGDFDKLAMFLWSLPPQEAIRGQESVLRARAVVAYKRHAFHELYAILESHNFDSKYHAELQQLW 227 (390)
Q Consensus 161 l~~~~~~~~l~~fl~~lp~~~~~~~~e~v~rAra~v~~h~~~f~el~~~L~~~~F~~~~h~~lq~lw 227 (390)
|.+.|+++.=...+..+= ...++|..+.-.-+.+.+..|+|.++-.+|+.-.-...+++.++.++
T Consensus 1 ll~~~~~~~A~~~~~~~l--~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKAL--QRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHH--HHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 345566555444444331 12234566666788888999999999999986664444456666665
No 74
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=46.64 E-value=31 Score=32.70 Aligned_cols=49 Identities=37% Similarity=0.495 Sum_probs=41.4
Q ss_pred CCCCCCCCChhhHHHHHHHHhhcCChhhHHHHHhcCCCcccccCCc--hHHHHHHHH
Q psy8148 3 KLNPNMSFTPEQIDCLCEAMQQSGDFDKLAMFLWSLPPQEAIRGQE--SVLRARAVV 57 (390)
Q Consensus 3 ~~~~~~~~~~~q~~~~c~~l~~~~~~~~l~~f~~slp~~~~~~~~e--~~l~a~a~v 57 (390)
|+.|+|.++.+|=..|-.++.+.| |+-|+.-||. .|.+-| -|--|||+|
T Consensus 95 Gl~P~LkL~a~~r~~v~~aa~~vG----l~~~~~RLP~--~LSGGqRQRvALARclv 145 (231)
T COG3840 95 GLSPGLKLNAEQREKVEAAAAQVG----LAGFLKRLPG--ELSGGQRQRVALARCLV 145 (231)
T ss_pred cCCcccccCHHHHHHHHHHHHHhC----hhhHhhhCcc--ccCchHHHHHHHHHHHh
Confidence 788999999999999999999998 8889999996 454443 667788887
No 75
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=44.07 E-value=28 Score=25.44 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=25.6
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhccccccccc
Q psy8148 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRR 316 (390)
Q Consensus 271 Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR 316 (390)
++-++.-.+-..+...+ ....+|..+|++.++|+.|.+|+.
T Consensus 7 LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k~ 47 (53)
T PF04218_consen 7 LTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNKD 47 (53)
T ss_dssp --HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhHH
Confidence 44444444444455444 578899999999999999998853
No 76
>KOG4414|consensus
Probab=39.31 E-value=51 Score=29.84 Aligned_cols=72 Identities=21% Similarity=0.446 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHh--hcCC-hh--------------------HHHHHHH-cCCCccccccchhhhhhHHHHHHhhhcH
Q psy8148 148 SFTPEQIDCLCEAMQ--QSGD-FD--------------------KLAMFLW-SLPPQEAIRGQESVLRARAVVAYKRHAF 203 (390)
Q Consensus 148 ~~~~~q~~~~c~~l~--~~~~-~~--------------------~l~~fl~-~lp~~~~~~~~e~v~rAra~v~~h~~~f 203 (390)
.||-+.|+-+|+.|. -+|. |+ -=+|||| .+|+..--.+.|.+.-=-..--..+.+|
T Consensus 12 A~SFdKi~D~Cdn~~Lea~~eGIa~~~dw~Ya~~L~~Yf~~dD~dnARfLWKRIP~AIKe~k~El~aaWgiGQkiWq~Df 91 (197)
T KOG4414|consen 12 AFSFDKIADICDNLELEAAGEGIATHDDWPYAIHLAGYFLHDDCDNARFLWKRIPPAIKEAKPELGAAWGIGQKIWQHDF 91 (197)
T ss_pred hhhHHHHHHHhhhhhhcccCCCccCCCcchHHHHHHHHHHhccchhHHHHHHhCCHHHhhcCchhhhhhhhhHHHHhccc
Confidence 588899999999876 2441 10 1268999 6887644445554432222223567778
Q ss_pred HHHHHHHhcCCCCccc
Q psy8148 204 HELYAILESHNFDSKY 219 (390)
Q Consensus 204 ~el~~~L~~~~F~~~~ 219 (390)
.-+|.-+.+|..|..-
T Consensus 92 ~GiYeaI~~~dWSeea 107 (197)
T KOG4414|consen 92 AGIYEAINAHDWSEEA 107 (197)
T ss_pred chHHHHHhhhcchHHH
Confidence 8999999888887663
No 77
>cd04755 Commd7 COMM_Domain containing protein 7. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=38.82 E-value=1.6e+02 Score=27.27 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHhh----cCChhHHHHHHHcCCCccccccc--hhhhhhHHHH----HHhhhcHHHHHHHHhcCCCCc
Q psy8148 148 SFTPEQIDCLCEAMQQ----SGDFDKLAMFLWSLPPQEAIRGQ--ESVLRARAVV----AYKRHAFHELYAILESHNFDS 217 (390)
Q Consensus 148 ~~~~~q~~~~c~~l~~----~~~~~~l~~fl~~lp~~~~~~~~--e~v~rAra~v----~~h~~~f~el~~~L~~~~F~~ 217 (390)
.+++++++.+|+.+.+ ....+|+...+..+-..--+... ..|++|-.++ ++|.=.=..|..-|++..-+.
T Consensus 6 ~l~~~~f~~l~~~i~~~L~~~k~~~~~~~~~~ef~~~~~~~~~dlk~vi~~l~fi~~~A~k~nv~~~~L~~eL~~lgL~~ 85 (180)
T cd04755 6 QLSEQQFSRLTEILFEFLLEPKESERLLNQLDEFAGENGISLGPLKNIVKSILLVPNGALKRNLTAEQLREDLIQLGLSE 85 (180)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCH
Confidence 5899999999998875 45567888888876332223332 3677766665 244444457888888888888
Q ss_pred cchHHHHHHHHhhhhhHHHhhhCCCCCc
Q psy8148 218 KYHAELQQLWMRGHYKEHAKIRGRDLGA 245 (390)
Q Consensus 218 ~~h~~lq~lw~~ahY~e~e~~rgrpL~~ 245 (390)
.+-..+.+.|....-...+..+++.|.+
T Consensus 86 eka~~~~~~w~~~~~~L~~~~~~~tL~~ 113 (180)
T cd04755 86 EKASYFSEQWKQHYSTLSRSAVGQTLMV 113 (180)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHcccCc
Confidence 8888999999877766777777776654
No 78
>KOG4414|consensus
Probab=37.21 E-value=49 Score=29.93 Aligned_cols=75 Identities=21% Similarity=0.465 Sum_probs=46.6
Q ss_pred CCChhhHHHHHHHHh--hcCC-hh--------------------hHHHHHh-cCCCcccccCCchHHHHHH-HHHhhcCC
Q psy8148 9 SFTPEQIDCLCEAMQ--QSGD-FD--------------------KLAMFLW-SLPPQEAIRGQESVLRARA-VVAYKRHA 63 (390)
Q Consensus 9 ~~~~~q~~~~c~~l~--~~~~-~~--------------------~l~~f~~-slp~~~~~~~~e~~l~a~a-~v~~~~~~ 63 (390)
.||-+.|+-+|++|+ -.|. |+ -=+|||| .+|+.---.+.|-+ -|-. ---..+.+
T Consensus 12 A~SFdKi~D~Cdn~~Lea~~eGIa~~~dw~Ya~~L~~Yf~~dD~dnARfLWKRIP~AIKe~k~El~-aaWgiGQkiWq~D 90 (197)
T KOG4414|consen 12 AFSFDKIADICDNLELEAAGEGIATHDDWPYAIHLAGYFLHDDCDNARFLWKRIPPAIKEAKPELG-AAWGIGQKIWQHD 90 (197)
T ss_pred hhhHHHHHHHhhhhhhcccCCCccCCCcchHHHHHHHHHHhccchhHHHHHHhCCHHHhhcCchhh-hhhhhhHHHHhcc
Confidence 588899999999874 3341 11 1379999 68874333334422 1111 11246788
Q ss_pred hHHHHHHHhcCCCCCCChHHH
Q psy8148 64 FHELYAILESHNFDSKYHAEL 84 (390)
Q Consensus 64 ~~ely~~l~~~~f~~~~h~~l 84 (390)
|.-+|.-+..|..|..-.+-+
T Consensus 91 f~GiYeaI~~~dWSeeak~im 111 (197)
T KOG4414|consen 91 FAGIYEAINAHDWSEEAKDIM 111 (197)
T ss_pred cchHHHHHhhhcchHHHHHHH
Confidence 999999998888876555444
No 79
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=34.17 E-value=36 Score=24.91 Aligned_cols=46 Identities=13% Similarity=0.307 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCchhcccccccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCcccc
Q psy8148 293 EKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQV 363 (390)
Q Consensus 293 ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qV 363 (390)
....||..+|++..++..|+.++. ..++.+....||..+|++..++
T Consensus 12 t~~~La~~~gis~~tl~~~~~~~~-------------------------~~~~~~~l~~ia~~l~~~~~el 57 (63)
T PF13443_consen 12 TQKDLARKTGISRSTLSRILNGKP-------------------------SNPSLDTLEKIAKALNCSPEEL 57 (63)
T ss_dssp -HHHHHHHHT--HHHHHHHHTTT------------------------------HHHHHHHHHHHT--HHHC
T ss_pred CHHHHHHHHCcCHHHHHHHHhccc-------------------------ccccHHHHHHHHHHcCCCHHHH
Confidence 456789999999999999986431 1244556677777777776654
No 80
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=33.73 E-value=68 Score=29.35 Aligned_cols=58 Identities=14% Similarity=0.249 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCCCcccccCCchHHHHHHHHHhhcCChHHHHHHHhcCC
Q psy8148 16 DCLCEAMQQSGDFDKLAMFLWSLPPQEAIRGQESVLRARAVVAYKRHAFHELYAILESHN 75 (390)
Q Consensus 16 ~~~c~~l~~~~~~~~l~~f~~slp~~~~~~~~e~~l~a~a~v~~~~~~~~ely~~l~~~~ 75 (390)
+-|||+|++.|++-.=.||.++....+.+.. .-+|.| |...--...|-.+|+.++.++
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~-~~fLeA-A~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPA-RKFLEA-AANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCH-HHHHHH-HHHcCCHHHHHHHHHHHHHhh
Confidence 3589999999999999999998755433321 112222 111223344566666666544
No 81
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=32.27 E-value=3.9e+02 Score=24.36 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=70.7
Q ss_pred HHHHHhcCCCcccccCCchHHHHHHHHHhhcCChHHHHHHHhcCCCCCCChHHHHHHHHHhhhHHHHHhcCCCCCccccC
Q psy8148 31 LAMFLWSLPPQEAIRGQESVLRARAVVAYKRHAFHELYAILESHNFDSKYHAELQQLWMRGHYKEHAKIRGRDLGYSSDD 110 (390)
Q Consensus 31 l~~f~~slp~~~~~~~~e~~l~a~a~v~~~~~~~~ely~~l~~~~f~~~~h~~lq~~w~~ahy~eae~~rgr~lg~~~~~ 110 (390)
|..|+.||-... +.-+..+...=.-...+.|.|..|..+|..+.++.+----+|=|=++..|+.+-
T Consensus 13 llEYirSl~~~~-i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~------------- 78 (167)
T PF07035_consen 13 LLEYIRSLNQHN-IPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAY------------- 78 (167)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHH-------------
Confidence 445666654322 333455555555556678899999999999998887766666665555554433
Q ss_pred CCCeeeecccccchhhhHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhhcCChhHHHHHHHcCCCc
Q psy8148 111 SSPVLYETNAHDFNKHYLEIQQKAQEYLNMKKLNPNMSFTPEQIDCLCEAMQQSGDFDKLAMFLWSLPPQ 180 (390)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~c~~l~~~~~~~~l~~fl~~lp~~ 180 (390)
|.-++|++-... .=+-|||+|.+.|++-.-.+|+.+....
T Consensus 79 ------------------------Ql~lDMLkRL~~------~~~~iievLL~~g~vl~ALr~ar~~~~~ 118 (167)
T PF07035_consen 79 ------------------------QLGLDMLKRLGT------AYEEIIEVLLSKGQVLEALRYARQYHKV 118 (167)
T ss_pred ------------------------HHHHHHHHHhhh------hHHHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 334466554321 1256899999999999999999886443
No 82
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=31.71 E-value=76 Score=22.94 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=42.9
Q ss_pred HhhcCChhhHHHHHhcCCCcccccCCchHHHHHHHHHhhcCChHHHHHHHhcCCCCCCChHHHHHHHH
Q psy8148 22 MQQSGDFDKLAMFLWSLPPQEAIRGQESVLRARAVVAYKRHAFHELYAILESHNFDSKYHAELQQLWM 89 (390)
Q Consensus 22 l~~~~~~~~l~~f~~slp~~~~~~~~e~~l~a~a~v~~~~~~~~ely~~l~~~~f~~~~h~~lq~~w~ 89 (390)
|.+.||++.=...+-.+= ..-++|..+.-..|.+.+..|+|.+=-.+|+.-.-....++..+.||-
T Consensus 1 ll~~~~~~~A~~~~~~~l--~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKAL--QRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHH--HHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 345566555333332221 112246777778999999999999999999977765555688777763
No 83
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=30.02 E-value=75 Score=23.49 Aligned_cols=41 Identities=27% Similarity=0.473 Sum_probs=32.7
Q ss_pred cCHHHHHHHHHHHhhCCC--CCHHHHHHHHHHhCCCchhcccc
Q psy8148 271 FKERSRNALKECYDKNRY--PNPDEKRQLSEITGLTLTQVSNW 311 (390)
Q Consensus 271 Fs~~q~~~Le~~F~~n~Y--Ps~~ek~~LA~~tgLs~~QV~~W 311 (390)
+++.|+.+|...+...=| |-...-.+||..+|++...+..-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st~~~~ 43 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKSTVSEH 43 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHHHHHH
Confidence 367899999999986644 66667789999999999887543
No 84
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.92 E-value=40 Score=29.54 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=35.9
Q ss_pred CChhhHHHHHHHHhhcCChhhHHH------------------------HHhcCCCccc-------------ccCCchHHH
Q psy8148 10 FTPEQIDCLCEAMQQSGDFDKLAM------------------------FLWSLPPQEA-------------IRGQESVLR 52 (390)
Q Consensus 10 ~~~~q~~~~c~~l~~~~~~~~l~~------------------------f~~slp~~~~-------------~~~~e~~l~ 52 (390)
.|-.+|--.+..|..+|++-+-.+ .+|+||..+. .+++|.+.
T Consensus 38 asR~Tvk~~lreLVa~G~l~~~G~~GvF~seqA~~dw~~~~~~~~~~~~~~~~pdg~~rry~~~~n~ic~ecr~s~~mq- 116 (127)
T PF06163_consen 38 ASRNTVKRYLRELVARGDLYRHGRSGVFPSEQARKDWDKARKKLVDPDLIWKLPDGEIRRYDRRQNIICRECRKSEVMQ- 116 (127)
T ss_pred CCHHHHHHHHHHHHHcCCeEeCCCccccccHHHHHHHHHhHHhhccchhhhhCCCccccccccccchhHHHHhhhHHHH-
Confidence 455667777778888887654333 6899998653 23444444
Q ss_pred HHHHHHhhcCChH
Q psy8148 53 ARAVVAYKRHAFH 65 (390)
Q Consensus 53 a~a~v~~~~~~~~ 65 (390)
-+.||.+|||.
T Consensus 117 --rvlafy~g~~q 127 (127)
T PF06163_consen 117 --RVLAFYQGNFQ 127 (127)
T ss_pred --HHHHHhccCCC
Confidence 57899999984
No 85
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=28.38 E-value=25 Score=30.58 Aligned_cols=63 Identities=14% Similarity=0.266 Sum_probs=35.4
Q ss_pred hhcCChhhHHHHHhcCCCcccccCCchHHHHHHH-HHhhcCChHHHHHHHhcCCCCCCChHHHHH
Q psy8148 23 QQSGDFDKLAMFLWSLPPQEAIRGQESVLRARAV-VAYKRHAFHELYAILESHNFDSKYHAELQQ 86 (390)
Q Consensus 23 ~~~~~~~~l~~f~~slp~~~~~~~~e~~l~a~a~-v~~~~~~~~ely~~l~~~~f~~~~h~~lq~ 86 (390)
+-.+|+ -=++|+|.+-|.+....++.|-..-.+ -+...|+|.+.|.++.++..++...+....
T Consensus 15 L~~~~~-~df~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (143)
T PF10075_consen 15 LMQNDL-SDFRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFWQALRSNPWSPDYKPFVPG 78 (143)
T ss_dssp HHTTTS-THHHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHHHHS-TT----HHHHTSTT
T ss_pred HHcCCc-hHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHhccchHHHHHHHHH
Confidence 334444 457889987776665656666554333 356789999999999988666644444433
No 86
>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition. This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.30 E-value=57 Score=27.67 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCchhcccccccccccCCCcchhhh-hhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCcccccccc
Q psy8148 293 EKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSI-QRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWF 367 (390)
Q Consensus 293 ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q-~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WF 367 (390)
...++|..++++...|..|++..+..+..+..... --....|......++-.+. .+||..+|++...|...+
T Consensus 20 s~~eaa~~F~VS~~Tv~~W~k~~~~G~~~~k~r~~~Kid~~~L~~~v~~~pd~tl---~Ela~~l~Vs~~ti~~~L 92 (119)
T PF01710_consen 20 SIREAAKRFGVSRNTVYRWLKRKETGDLEPKPRGRKKIDRDELKALVEENPDATL---RELAERLGVSPSTIWRAL 92 (119)
T ss_pred hHHHHHHHhCcHHHHHHHHHHhcccccccccccccccccHHHHHHHHHHCCCcCH---HHHHHHcCCCHHHHHHHH
Confidence 45568899999999999999933332211111110 0012445555555444433 357888999888776555
No 87
>PF04936 DUF658: Protein of unknown function (DUF658); InterPro: IPR007020 This entry is represented by Bacteriophage r1t, Orf18. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. These are proteins of unknown function found in Lactococcus lactis and in their associated bacteriophage.
Probab=25.17 E-value=76 Score=29.10 Aligned_cols=81 Identities=17% Similarity=0.310 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCCchhcccccccccccCCCcchhhh-----------h--------hhhhhhhhhhcCCCCCCHHHHHHH
Q psy8148 292 DEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSI-----------Q--------RSRNALKECYDKNRYPNPDEKRQL 352 (390)
Q Consensus 292 ~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q-----------~--------~q~~~Le~~F~~n~yPs~~er~eL 352 (390)
....+|+..+++|..+|..|.+|-+...+....... . ......-+.++...+|..-.-.++
T Consensus 15 gt~~e~~~~~~VS~~sv~~WiKNG~~~~~a~~~yKhAvlN~E~t~e~~e~~kke~kklp~sVy~~y~kG~~~~TGta~ei 94 (186)
T PF04936_consen 15 GTIDELADYFDVSRTSVSVWIKNGKDPKRAKPKYKHAVLNYEKTDELNEQKKKEEKKLPASVYDYYDKGIFIMTGTAREI 94 (186)
T ss_pred ccHHHHHHHHccCHHHHHHHHHcCCCcccccchhhHHHhcccchhhhhhhhcchhhhccHHHHHHHhccccccCccHHHH
Confidence 456789999999999999999999887665321110 0 011222335677778888888889
Q ss_pred HHhhCCCccccccccccccc
Q psy8148 353 SEITGLTLTQVSNWFKNRRQ 372 (390)
Q Consensus 353 A~~lgLs~~qVk~WFqNRR~ 372 (390)
|+.+++-..-|=.|-|-...
T Consensus 95 sq~~~i~k~~Vy~yis~Gk~ 114 (186)
T PF04936_consen 95 SQFFSIKKQNVYYYISVGKK 114 (186)
T ss_pred HhhhccccccEEEEEecccc
Confidence 99999998888888875433
No 88
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=24.63 E-value=40 Score=25.73 Aligned_cols=19 Identities=16% Similarity=0.506 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCchhccccc
Q psy8148 294 KRQLSEITGLTLTQVSNWF 312 (390)
Q Consensus 294 k~~LA~~tgLs~~QV~~WF 312 (390)
-..+|..+|+++.+|+.|=
T Consensus 25 lkdIA~~Lgvs~~tIr~WK 43 (60)
T PF10668_consen 25 LKDIAEKLGVSESTIRKWK 43 (60)
T ss_pred HHHHHHHHCCCHHHHHHHh
Confidence 4568999999999999994
No 89
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=23.95 E-value=97 Score=28.05 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=19.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcC--ChhHHHHHHH-cCCCc
Q psy8148 143 LNPNMSFTPEQIDCLCEAMQQSG--DFDKLAMFLW-SLPPQ 180 (390)
Q Consensus 143 ~~~~~~~~~~q~~~~c~~l~~~~--~~~~l~~fl~-~lp~~ 180 (390)
+-|.+.++.+|++.+||-|...+ +-+-|..+|- .+||.
T Consensus 13 GipPlPL~a~Qt~~lielLk~~~~~~~~~lldLL~~RV~PG 53 (154)
T PF11791_consen 13 GIPPLPLNAEQTAELIELLKNPPAGEEAFLLDLLTNRVPPG 53 (154)
T ss_dssp T-------HHHHHHHHHHHHS--TT-HHHHHHHHHHSS--T
T ss_pred CCCCCCCCHHHHHHHHHHHhCCCCccHHHHHHHHHhcCCCC
Confidence 45788999999999999888744 5555666554 78874
No 90
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=20.64 E-value=71 Score=37.64 Aligned_cols=32 Identities=16% Similarity=0.485 Sum_probs=0.0
Q ss_pred HHHHHHHh---cCCCCCCC-----hHHHHHHHHHhhhHHH
Q psy8148 65 HELYAILE---SHNFDSKY-----HAELQQLWMRGHYKEH 96 (390)
Q Consensus 65 ~ely~~l~---~~~f~~~~-----h~~lq~~w~~ahy~ea 96 (390)
.++|.++| +.-|+.+| +=-.|..||||||+..
T Consensus 732 ~~ifd~i~kFA~YGFNkSHAaAYa~isYqtAyLKahYP~e 771 (1139)
T COG0587 732 EKIFDLIEKFAGYGFNKSHAAAYALLSYQTAYLKAHYPAE 771 (1139)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhCcHH
Done!