Query psy8148
Match_columns 390
No_of_seqs 427 out of 2184
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 19:49:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xsd_C POU domain, class 3, tr 99.5 2.9E-14 9.9E-19 127.8 5.7 141 162-324 7-159 (164)
2 1b72_A Protein (homeobox prote 99.3 2E-13 6.7E-18 111.9 1.4 75 301-378 3-93 (97)
3 1au7_A Protein PIT-1, GHF-1; c 99.3 1.7E-12 5.7E-17 114.1 6.1 117 193-322 16-145 (146)
4 2vi6_A Homeobox protein nanog; 99.3 3.2E-13 1.1E-17 101.6 1.0 60 315-377 2-61 (62)
5 1zq3_P PRD-4, homeotic bicoid 99.3 4.5E-13 1.6E-17 102.7 1.8 65 316-383 2-66 (68)
6 2dmq_A LIM/homeobox protein LH 99.3 4.4E-13 1.5E-17 105.8 1.6 69 315-386 6-74 (80)
7 2dms_A Homeobox protein OTX2; 99.3 5.7E-13 2E-17 105.2 1.6 68 315-385 6-73 (80)
8 1du6_A PBX1, homeobox protein 99.3 2.5E-12 8.4E-17 97.2 4.8 57 265-321 4-63 (64)
9 2cra_A Homeobox protein HOX-B1 99.3 7.9E-13 2.7E-17 101.8 1.5 61 315-378 6-66 (70)
10 1bw5_A ISL-1HD, insulin gene e 99.3 7.5E-13 2.6E-17 100.7 1.3 61 315-378 2-62 (66)
11 2l7z_A Homeobox protein HOX-A1 99.3 8.1E-13 2.8E-17 102.7 1.3 65 315-382 6-70 (73)
12 2djn_A Homeobox protein DLX-5; 99.2 1.5E-12 5.1E-17 100.3 2.3 61 315-378 6-66 (70)
13 2l7z_A Homeobox protein HOX-A1 99.2 3.6E-12 1.2E-16 99.0 4.3 63 262-324 5-67 (73)
14 2hdd_A Protein (engrailed home 99.2 1.9E-12 6.6E-17 96.9 2.6 55 267-321 6-60 (61)
15 2h1k_A IPF-1, pancreatic and d 99.2 7E-13 2.4E-17 100.1 0.2 59 316-377 3-61 (63)
16 2hdd_A Protein (engrailed home 99.2 7.6E-13 2.6E-17 99.2 0.2 58 316-376 3-60 (61)
17 2da2_A Alpha-fetoprotein enhan 99.2 9.1E-13 3.1E-17 101.3 0.6 62 315-379 6-67 (70)
18 2dmt_A Homeobox protein BARH-l 99.2 1E-12 3.5E-17 103.8 0.9 62 314-378 15-76 (80)
19 2cra_A Homeobox protein HOX-B1 99.2 5.8E-12 2E-16 97.0 5.1 59 266-324 9-67 (70)
20 2cqx_A LAG1 longevity assuranc 99.2 1.9E-12 6.5E-17 100.6 2.3 66 258-323 2-68 (72)
21 1yz8_P Pituitary homeobox 2; D 99.2 5.9E-13 2E-17 102.0 -0.7 64 315-381 2-65 (68)
22 1ahd_P Antennapedia protein mu 99.2 6.7E-13 2.3E-17 101.8 -0.4 61 316-379 2-62 (68)
23 1ig7_A Homeotic protein MSX-1; 99.2 9E-13 3.1E-17 97.6 0.3 56 318-376 2-57 (58)
24 3rkq_A Homeobox protein NKX-2. 99.2 1.6E-12 5.5E-17 95.9 1.7 57 316-375 2-58 (58)
25 2cue_A Paired box protein PAX6 99.2 1.6E-12 5.5E-17 102.7 1.7 65 315-382 6-70 (80)
26 1bw5_A ISL-1HD, insulin gene e 99.2 4.4E-12 1.5E-16 96.5 4.0 56 267-322 6-61 (66)
27 1akh_A Protein (mating-type pr 99.2 9.8E-13 3.4E-17 98.4 0.3 59 314-375 3-61 (61)
28 1ftt_A TTF-1 HD, thyroid trans 99.2 1E-12 3.5E-17 100.7 0.4 62 316-380 2-63 (68)
29 1nk2_P Homeobox protein VND; h 99.2 1.5E-12 5.1E-17 102.2 1.3 65 314-381 7-71 (77)
30 2kt0_A Nanog, homeobox protein 99.2 1.6E-12 5.3E-17 103.5 1.4 62 314-378 20-81 (84)
31 1akh_A Protein (mating-type pr 99.2 3.4E-12 1.1E-16 95.5 3.1 54 267-320 8-61 (61)
32 3a02_A Homeobox protein arista 99.2 3E-12 1E-16 95.6 2.8 55 268-322 3-57 (60)
33 3a03_A T-cell leukemia homeobo 99.2 2.4E-12 8.3E-17 94.9 2.3 53 269-321 2-54 (56)
34 2dmu_A Homeobox protein goosec 99.2 1.2E-12 4.1E-17 100.8 0.5 62 315-379 6-67 (70)
35 1wh5_A ZF-HD homeobox family p 99.2 2.4E-12 8.1E-17 102.1 2.2 60 314-376 15-78 (80)
36 2ecc_A Homeobox and leucine zi 99.2 1.5E-12 5E-17 102.3 0.9 59 319-380 6-64 (76)
37 2ly9_A Zinc fingers and homeob 99.2 6.7E-12 2.3E-16 97.5 4.6 64 261-324 3-66 (74)
38 2da1_A Alpha-fetoprotein enhan 99.2 1.1E-12 3.6E-17 101.0 -0.2 61 315-378 6-66 (70)
39 2k40_A Homeobox expressed in E 99.2 1.9E-12 6.4E-17 98.8 1.2 61 317-380 2-62 (67)
40 2vi6_A Homeobox protein nanog; 99.2 5.2E-12 1.8E-16 94.9 3.6 55 267-321 6-60 (62)
41 2da3_A Alpha-fetoprotein enhan 99.2 1.5E-12 5.3E-17 102.4 0.6 62 314-378 15-76 (80)
42 1jgg_A Segmentation protein EV 99.2 1.3E-12 4.4E-17 97.6 0.1 57 318-377 3-59 (60)
43 2ecc_A Homeobox and leucine zi 99.2 3.3E-12 1.1E-16 100.3 2.4 54 269-322 8-61 (76)
44 1du6_A PBX1, homeobox protein 99.2 4.1E-12 1.4E-16 96.0 2.8 58 316-376 3-63 (64)
45 2djn_A Homeobox protein DLX-5; 99.2 7.5E-12 2.6E-16 96.3 4.3 58 266-323 9-66 (70)
46 3nau_A Zinc fingers and homeob 99.2 1.1E-12 3.6E-17 100.1 -0.5 50 329-378 14-63 (66)
47 3a01_A Homeodomain-containing 99.2 1.5E-12 5.2E-17 105.9 0.4 68 313-383 14-81 (93)
48 1ig7_A Homeotic protein MSX-1; 99.2 3.9E-12 1.3E-16 94.2 2.5 54 268-321 4-57 (58)
49 1k61_A Mating-type protein alp 99.2 4.3E-12 1.5E-16 94.7 2.7 54 269-322 3-59 (60)
50 2k40_A Homeobox expressed in E 99.2 4.6E-12 1.6E-16 96.6 3.0 58 267-324 4-61 (67)
51 3a02_A Homeobox protein arista 99.2 1.6E-12 5.4E-17 97.1 0.3 56 320-378 3-58 (60)
52 1puf_A HOX-1.7, homeobox prote 99.2 2.1E-12 7.1E-17 101.4 0.9 69 309-380 5-74 (77)
53 3rkq_A Homeobox protein NKX-2. 99.2 6.5E-12 2.2E-16 92.6 3.4 54 267-320 5-58 (58)
54 1fjl_A Paired protein; DNA-bin 99.2 2.3E-12 7.8E-17 102.0 0.7 65 312-379 14-78 (81)
55 3a03_A T-cell leukemia homeobo 99.2 1.5E-12 5.1E-17 96.0 -0.4 48 330-377 8-55 (56)
56 2h1k_A IPF-1, pancreatic and d 99.2 5.2E-12 1.8E-16 95.2 2.6 55 267-321 6-60 (63)
57 2da2_A Alpha-fetoprotein enhan 99.2 9.2E-12 3.1E-16 95.7 3.9 57 267-323 10-66 (70)
58 1puf_B PRE-B-cell leukemia tra 99.2 3.3E-12 1.1E-16 99.1 1.3 62 317-381 2-66 (73)
59 2e1o_A Homeobox protein PRH; D 99.2 2.3E-12 7.9E-17 99.2 0.5 61 315-378 6-66 (70)
60 2l9r_A Homeobox protein NKX-3. 99.2 2.2E-12 7.5E-17 99.6 0.3 54 329-382 14-67 (69)
61 1b8i_A Ultrabithorax, protein 99.2 2.1E-12 7.1E-17 102.4 0.2 61 315-378 19-79 (81)
62 1uhs_A HOP, homeodomain only p 99.2 6.1E-12 2.1E-16 97.4 2.8 58 265-322 2-60 (72)
63 1jgg_A Segmentation protein EV 99.2 5.9E-12 2E-16 94.0 2.6 54 268-321 5-58 (60)
64 1wh7_A ZF-HD homeobox family p 99.2 5.3E-12 1.8E-16 100.1 2.4 59 314-376 15-78 (80)
65 2r5y_A Homeotic protein sex co 99.2 2.9E-12 1E-16 103.0 0.8 61 315-378 27-87 (88)
66 1uhs_A HOP, homeodomain only p 99.2 3.1E-12 1E-16 99.0 0.9 59 318-379 3-62 (72)
67 2m0c_A Homeobox protein arista 99.2 2.9E-12 9.9E-17 99.6 0.7 63 314-379 7-69 (75)
68 2dmu_A Homeobox protein goosec 99.2 8.7E-12 3E-16 95.9 3.3 58 266-323 9-66 (70)
69 2da5_A Zinc fingers and homeob 99.2 3.4E-12 1.2E-16 99.7 1.0 60 321-383 12-71 (75)
70 2da1_A Alpha-fetoprotein enhan 99.2 8E-12 2.7E-16 96.0 3.0 58 266-323 9-66 (70)
71 2dmt_A Homeobox protein BARH-l 99.2 1.6E-11 5.6E-16 96.9 4.6 58 266-323 19-76 (80)
72 2e1o_A Homeobox protein PRH; D 99.2 1E-11 3.5E-16 95.6 3.3 57 266-322 9-65 (70)
73 2dmn_A Homeobox protein TGIF2L 99.2 5.9E-12 2E-16 100.3 1.9 65 315-382 6-73 (83)
74 2da4_A Hypothetical protein DK 99.2 2.1E-12 7.3E-17 101.9 -0.7 62 314-378 6-71 (80)
75 2hi3_A Homeodomain-only protei 99.2 4.3E-12 1.5E-16 98.6 0.6 59 318-379 4-63 (73)
76 2dn0_A Zinc fingers and homeob 99.2 1.8E-11 6E-16 95.8 4.1 57 268-324 12-68 (76)
77 1wh5_A ZF-HD homeobox family p 99.2 2.6E-11 8.8E-16 96.1 5.1 57 266-322 19-79 (80)
78 2dn0_A Zinc fingers and homeob 99.1 4.8E-12 1.6E-16 99.0 0.6 60 319-381 11-70 (76)
79 2ecb_A Zinc fingers and homeob 99.1 5.9E-12 2E-16 101.8 1.1 58 322-382 17-74 (89)
80 2kt0_A Nanog, homeobox protein 99.1 3E-11 1E-15 96.0 5.1 58 266-323 24-81 (84)
81 1x2n_A Homeobox protein pknox1 99.1 5.4E-12 1.9E-16 97.8 0.7 62 315-379 6-70 (73)
82 1e3o_C Octamer-binding transcr 99.1 3.1E-11 1.1E-15 107.5 5.7 139 163-322 2-159 (160)
83 1b72_B Protein (PBX1); homeodo 99.1 7.3E-12 2.5E-16 100.2 1.4 62 317-381 2-66 (87)
84 2ly9_A Zinc fingers and homeob 99.1 6.7E-12 2.3E-16 97.5 1.1 61 317-380 7-67 (74)
85 1ahd_P Antennapedia protein mu 99.1 1.1E-11 3.9E-16 94.9 2.3 56 267-322 5-60 (68)
86 1zq3_P PRD-4, homeotic bicoid 99.1 1.4E-11 4.8E-16 94.3 2.8 56 267-322 5-60 (68)
87 1puf_B PRE-B-cell leukemia tra 99.1 1.3E-11 4.6E-16 95.6 2.6 58 268-325 5-65 (73)
88 1ftt_A TTF-1 HD, thyroid trans 99.1 1.4E-11 4.9E-16 94.3 2.7 56 268-323 6-61 (68)
89 2cue_A Paired box protein PAX6 99.1 1.8E-11 6.3E-16 96.6 3.2 58 266-323 9-66 (80)
90 3nau_A Zinc fingers and homeob 99.1 1.1E-11 3.6E-16 94.6 1.7 50 272-321 12-61 (66)
91 2da3_A Alpha-fetoprotein enhan 99.1 2E-11 6.8E-16 96.0 3.3 58 266-323 19-76 (80)
92 1mnm_C Protein (MAT alpha-2 tr 99.1 2.3E-11 8E-16 97.5 3.7 54 268-321 31-87 (87)
93 1x2m_A LAG1 longevity assuranc 99.1 8.5E-12 2.9E-16 94.9 1.0 48 330-377 11-59 (64)
94 2dms_A Homeobox protein OTX2; 99.1 2.5E-11 8.4E-16 95.8 3.6 59 266-324 9-67 (80)
95 1x2n_A Homeobox protein pknox1 99.1 1.7E-11 5.9E-16 95.0 2.6 56 267-322 10-68 (73)
96 2hi3_A Homeodomain-only protei 99.1 1.8E-11 6.3E-16 94.9 2.7 56 267-322 5-61 (73)
97 2cqx_A LAG1 longevity assuranc 99.1 8.9E-12 3E-16 96.8 0.9 48 331-378 20-68 (72)
98 1nk2_P Homeobox protein VND; h 99.1 2.7E-11 9.4E-16 94.9 3.6 56 267-322 12-67 (77)
99 1k61_A Mating-type protein alp 99.1 7.6E-12 2.6E-16 93.3 0.4 54 321-377 3-59 (60)
100 3k2a_A Homeobox protein MEIS2; 99.1 1.9E-11 6.6E-16 93.5 2.5 55 270-324 4-61 (67)
101 1yz8_P Pituitary homeobox 2; D 99.1 1E-11 3.6E-16 95.0 1.0 56 267-322 6-61 (68)
102 1puf_A HOX-1.7, homeobox prote 99.1 2.6E-11 8.8E-16 95.1 3.2 56 267-322 16-71 (77)
103 2dmq_A LIM/homeobox protein LH 99.1 2.7E-11 9.2E-16 95.4 3.3 57 266-322 9-65 (80)
104 2e19_A Transcription factor 8; 99.1 1.3E-11 4.6E-16 93.7 1.3 49 329-377 13-61 (64)
105 2e19_A Transcription factor 8; 99.1 4.3E-11 1.5E-15 90.9 4.0 53 270-322 9-61 (64)
106 1fjl_A Paired protein; DNA-bin 99.1 2.7E-11 9.1E-16 95.8 2.9 56 267-322 21-76 (81)
107 1wh7_A ZF-HD homeobox family p 99.1 6.9E-11 2.4E-15 93.7 5.2 56 266-322 19-79 (80)
108 2dmn_A Homeobox protein TGIF2L 99.1 4.6E-11 1.6E-15 95.1 3.9 56 267-322 10-68 (83)
109 1b8i_A Ultrabithorax, protein 99.1 2.8E-11 9.6E-16 95.9 2.6 57 266-322 22-78 (81)
110 2m0c_A Homeobox protein arista 99.1 3.9E-11 1.3E-15 93.1 3.4 58 267-324 12-69 (75)
111 2cuf_A FLJ21616 protein; homeo 99.1 1.5E-11 5.2E-16 100.2 1.1 63 315-380 6-83 (95)
112 3nar_A ZHX1, zinc fingers and 99.1 1.4E-11 4.7E-16 100.7 0.7 60 316-378 25-84 (96)
113 3l1p_A POU domain, class 5, tr 99.1 4.7E-11 1.6E-15 105.8 4.2 56 267-322 99-154 (155)
114 1b72_B Protein (PBX1); homeodo 99.1 3.1E-11 1.1E-15 96.5 2.6 58 268-325 5-65 (87)
115 2ecb_A Zinc fingers and homeob 99.1 3E-11 1E-15 97.7 2.5 55 270-324 17-71 (89)
116 1mnm_C Protein (MAT alpha-2 tr 99.1 1.8E-11 6.2E-16 98.1 1.2 60 314-376 25-87 (87)
117 1le8_B Mating-type protein alp 99.1 4.3E-11 1.5E-15 95.2 3.3 55 270-324 8-65 (83)
118 2l9r_A Homeobox protein NKX-3. 99.1 4.6E-11 1.6E-15 92.1 3.3 55 270-324 10-64 (69)
119 3a01_A Homeodomain-containing 99.1 5.4E-11 1.9E-15 96.7 3.7 58 266-323 19-76 (93)
120 2da5_A Zinc fingers and homeob 99.1 4.7E-11 1.6E-15 93.2 3.2 55 269-323 12-66 (75)
121 2r5y_A Homeotic protein sex co 99.1 3.6E-11 1.2E-15 96.6 2.4 57 266-322 30-86 (88)
122 1le8_B Mating-type protein alp 99.1 1.8E-11 6.1E-16 97.5 0.5 57 320-379 6-65 (83)
123 2xsd_C POU domain, class 3, tr 99.1 1.5E-11 5.1E-16 110.1 -0.0 65 314-381 97-161 (164)
124 3nar_A ZHX1, zinc fingers and 99.1 5.5E-11 1.9E-15 97.1 3.3 59 266-324 27-85 (96)
125 2da4_A Hypothetical protein DK 99.1 2.3E-11 7.7E-16 96.0 0.7 56 266-321 10-69 (80)
126 3d1n_I POU domain, class 6, tr 99.1 3.7E-11 1.3E-15 105.9 2.1 55 267-321 96-150 (151)
127 1x2m_A LAG1 longevity assuranc 99.0 6.1E-11 2.1E-15 90.1 2.5 51 273-323 9-60 (64)
128 1au7_A Protein PIT-1, GHF-1; c 99.0 3.2E-11 1.1E-15 105.9 0.9 103 259-377 41-145 (146)
129 2dmp_A Zinc fingers and homeob 99.0 3.9E-11 1.3E-15 96.8 1.1 56 323-381 20-75 (89)
130 3k2a_A Homeobox protein MEIS2; 99.0 2.8E-11 9.6E-16 92.6 0.2 54 330-383 9-65 (67)
131 1e3o_C Octamer-binding transcr 99.0 3.8E-11 1.3E-15 106.9 0.5 61 314-377 99-159 (160)
132 1b72_A Protein (homeobox prote 99.0 8.1E-11 2.8E-15 96.3 2.4 57 266-322 36-92 (97)
133 2dmp_A Zinc fingers and homeob 99.0 9E-11 3.1E-15 94.7 2.4 55 270-324 19-73 (89)
134 2da6_A Hepatocyte nuclear fact 99.0 7E-11 2.4E-15 97.6 1.7 64 315-381 5-89 (102)
135 1lfb_A Liver transcription fac 99.0 6.5E-11 2.2E-15 97.5 1.5 62 315-379 8-90 (99)
136 3d1n_I POU domain, class 6, tr 99.0 5.7E-11 2E-15 104.7 1.1 60 314-376 91-150 (151)
137 2cuf_A FLJ21616 protein; homeo 99.0 1.8E-10 6.1E-15 93.9 2.7 58 266-323 9-81 (95)
138 3l1p_A POU domain, class 5, tr 99.0 1.1E-10 3.7E-15 103.5 1.4 61 314-377 94-154 (155)
139 2lk2_A Homeobox protein TGIF1; 99.0 1.2E-10 4.1E-15 93.9 1.6 56 267-322 8-66 (89)
140 1wi3_A DNA-binding protein SAT 99.0 1.3E-10 4.3E-15 88.9 1.4 59 315-376 6-65 (71)
141 1wi3_A DNA-binding protein SAT 98.9 4.5E-10 1.5E-14 85.8 3.9 54 266-319 9-63 (71)
142 2d5v_A Hepatocyte nuclear fact 98.9 1.8E-10 6.1E-15 102.7 1.2 64 314-380 95-158 (164)
143 2d5v_A Hepatocyte nuclear fact 98.9 5.7E-10 1.9E-14 99.4 4.0 59 266-324 99-157 (164)
144 1lfb_A Liver transcription fac 98.9 6.5E-10 2.2E-14 91.5 3.6 58 267-324 12-90 (99)
145 2da6_A Hepatocyte nuclear fact 98.8 1E-09 3.4E-14 90.7 2.8 57 266-322 8-85 (102)
146 2lk2_A Homeobox protein TGIF1; 98.8 3.8E-10 1.3E-14 91.0 0.3 54 330-383 16-72 (89)
147 2da7_A Zinc finger homeobox pr 98.7 2.6E-09 8.8E-14 82.1 1.6 44 329-372 15-58 (71)
148 1ic8_A Hepatocyte nuclear fact 98.7 1.1E-09 3.9E-14 100.4 -0.8 61 313-376 112-193 (194)
149 2da7_A Zinc finger homeobox pr 98.7 8.1E-09 2.8E-13 79.3 2.6 47 273-319 14-60 (71)
150 1ic8_A Hepatocyte nuclear fact 98.5 1.6E-08 5.4E-13 92.7 1.1 56 266-321 117-193 (194)
151 1mh3_A Maltose binding-A1 home 98.5 4.1E-08 1.4E-12 97.4 4.0 51 270-320 371-421 (421)
152 2h8r_A Hepatocyte nuclear fact 98.5 5.9E-08 2E-12 90.3 3.7 55 266-320 144-219 (221)
153 2h8r_A Hepatocyte nuclear fact 98.5 2.8E-08 9.5E-13 92.5 1.1 59 314-375 140-219 (221)
154 1mh3_A Maltose binding-A1 home 98.4 2.5E-08 8.7E-13 98.9 -0.2 47 329-375 375-421 (421)
155 2nzz_A Penetratin conjugated G 97.8 3.5E-06 1.2E-10 56.9 0.7 21 361-381 1-21 (37)
156 2nzz_A Penetratin conjugated G 96.1 0.00068 2.3E-08 45.7 -0.6 20 306-325 1-20 (37)
157 2ys9_A Homeobox and leucine zi 89.8 0.17 5.8E-06 38.5 2.5 40 276-315 18-57 (70)
158 2ys9_A Homeobox and leucine zi 84.2 0.28 9.4E-06 37.4 0.8 37 332-368 19-55 (70)
159 1wgn_A UBAP1, ubiquitin associ 40.3 5.7 0.00019 29.4 -0.1 50 126-178 8-58 (63)
160 3kz3_A Repressor protein CI; f 39.2 25 0.00085 25.7 3.4 48 294-367 28-75 (80)
161 4b0z_A RPN12, 26S proteasome r 32.9 43 0.0015 30.4 4.6 53 23-75 108-161 (229)
162 1pdn_C Protein (PRD paired); p 31.2 42 0.0014 26.1 3.7 39 271-314 18-56 (128)
163 3omt_A Uncharacterized protein 30.6 54 0.0018 23.2 4.0 43 294-362 24-66 (73)
164 3t76_A VANU, transcriptional r 30.0 51 0.0017 25.3 3.9 43 294-363 40-82 (88)
165 3bs3_A Putative DNA-binding pr 27.3 72 0.0024 22.4 4.2 42 294-361 26-67 (76)
166 2k27_A Paired box protein PAX- 24.1 49 0.0017 27.5 3.1 96 271-371 26-136 (159)
167 2glo_A Brinker CG9653-PA; prot 23.7 50 0.0017 22.9 2.6 42 271-313 6-47 (59)
168 1u78_A TC3 transposase, transp 23.3 33 0.0011 27.5 1.7 89 271-371 7-104 (141)
169 1y7y_A C.AHDI; helix-turn-heli 23.0 86 0.003 21.8 3.9 21 294-314 29-49 (74)
170 4b0z_A RPN12, 26S proteasome r 20.3 1.4E+02 0.0049 26.8 5.7 53 162-214 108-161 (229)
171 2l1q_A Liver-expressed antimic 20.2 26 0.0009 23.5 0.4 23 102-124 11-35 (40)
172 1k78_A Paired box protein PAX5 20.2 63 0.0022 26.4 2.9 40 270-314 32-71 (149)
No 1
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.47 E-value=2.9e-14 Score=127.76 Aligned_cols=141 Identities=18% Similarity=0.239 Sum_probs=95.3
Q ss_pred hhcCChhHHHHHHHcCCCccccccchhhhhhHHHHHHhhhcHHHHHHHHhcCCCCcc----------chHHHHHHH--Hh
Q psy8148 162 QQSGDFDKLAMFLWSLPPQEAIRGQESVLRARAVVAYKRHAFHELYAILESHNFDSK----------YHAELQQLW--MR 229 (390)
Q Consensus 162 ~~~~~~~~l~~fl~~lp~~~~~~~~e~v~rAra~v~~h~~~f~el~~~L~~~~F~~~----------~h~~lq~lw--~~ 229 (390)
..+.+++.|..|...+... |..+.|.+.+...++..|.+..|+.. ++..+..|| +.
T Consensus 7 ~~~~~~~~l~~fa~~fk~~------------ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~ 74 (164)
T 2xsd_C 7 EDAPSSDDLEQFAKQFKQR------------RIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLN 74 (164)
T ss_dssp --CCCHHHHHHHHHHHHHH------------HHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHH------------HhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHH
Confidence 4678889999998876543 55667778777777788777777632 233445555 67
Q ss_pred hhhhHHHhhhCCCCCcccccccccCCCCCCcccCCCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcc
Q psy8148 230 GHYKEHAKIRGRDLGAVDKYRIRKKFPLPKTIWDGEETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVS 309 (390)
Q Consensus 230 ahY~e~e~~rgrpL~~v~kyr~Rkk~p~P~ti~dge~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~ 309 (390)
.++.+++...|.+ +.++++...++.. +.+..|+..|+.+|+..|..++||+..++..||..+||++.||+
T Consensus 75 ~wl~eae~~~~~~-~~~~~~~~~~~~r---------r~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 144 (164)
T 2xsd_C 75 KWLEETDSSSGSP-TNLDKIAAQGRKR---------KKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVR 144 (164)
T ss_dssp HHHHHHCC---------------------------------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHhhhccccCCC-cccccccccccCC---------CCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhh
Confidence 7788888766655 3344443322222 23347999999999999999999999999999999999999999
Q ss_pred cccccccccCCCcch
Q psy8148 310 NWFKNRRQRDRTPQQ 324 (390)
Q Consensus 310 ~WFqNRR~R~R~~~t 324 (390)
+||+|||+|+|+...
T Consensus 145 vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 145 VWFCNRRQKEKRMTP 159 (164)
T ss_dssp HHHHHHHHHHTBSCC
T ss_pred hhhHHhhHHHhhccC
Confidence 999999999987643
No 2
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=2e-13 Score=111.91 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=57.9
Q ss_pred hCCCchhccccccccccc----------------CCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccc
Q psy8148 301 TGLTLTQVSNWFKNRRQR----------------DRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVS 364 (390)
Q Consensus 301 tgLs~~QV~~WFqNRR~R----------------~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk 364 (390)
.+.+..+|-.||++.|.. .|+.++..|. ..|+..|..++||+..++.+||..+||+..+|+
T Consensus 3 ~~~~~~~~~~W~~~~r~~~~~~~~~~~~~~~~rr~Rt~ft~~Ql---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 79 (97)
T 1b72_A 3 PNTPTARTFDWMKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQL---TELEKEFHFNKYLSRARRVEIAATLELNETQVK 79 (97)
T ss_dssp -----CCCCGGGGC--------------------CCCCCCHHHH---HHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcCcCHHHH---HHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhH
Confidence 455667777888877643 3455565555 999999999999999999999999999999999
Q ss_pred cccccccccccchh
Q psy8148 365 NWFKNRRQRDRTPQ 378 (390)
Q Consensus 365 ~WFqNRR~K~kk~~ 378 (390)
+||||||+|+|+..
T Consensus 80 vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 80 IWFQNRRMKQKKRE 93 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHh
Confidence 99999999999854
No 3
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.31 E-value=1.7e-12 Score=114.14 Aligned_cols=117 Identities=20% Similarity=0.297 Sum_probs=76.7
Q ss_pred HHHHHHhhhcHHHHHHHHhcCCCC-------------ccchHHHHHHHHhhhhhHHHhhhCCCCCcccccccccCCCCCC
Q psy8148 193 RAVVAYKRHAFHELYAILESHNFD-------------SKYHAELQQLWMRGHYKEHAKIRGRDLGAVDKYRIRKKFPLPK 259 (390)
Q Consensus 193 ra~v~~h~~~f~el~~~L~~~~F~-------------~~~h~~lq~lw~~ahY~e~e~~rgrpL~~v~kyr~Rkk~p~P~ 259 (390)
|....|.+.+...++..|.+..|| ..++..|.- ++...+.+++...+...+.++..+.+
T Consensus 16 ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkP-lL~~wl~e~e~~~~~~~~~~~~~~~~------- 87 (146)
T 1au7_A 16 RIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKA-ILSKWLEEAEQVGALYNEKVGANERK------- 87 (146)
T ss_dssp HHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHH-HHHHHHHHCCC----------------------
T ss_pred HHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcch-HHHHHHHHhhcccCccCcccCCCCCC-------
Confidence 344556666666666666666655 333444443 25566677776554444433332111
Q ss_pred cccCCCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 260 TIWDGEETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 260 ti~dge~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
.+.+..|+..|+.+|+..|..++||+..++..||..+||++.||++||+|||+|+|..
T Consensus 88 -----rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 88 -----RKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred -----CCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 1233479999999999999999999999999999999999999999999999998864
No 4
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.30 E-value=3.2e-13 Score=101.58 Aligned_cols=60 Identities=30% Similarity=0.484 Sum_probs=51.4
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccch
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 377 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~ 377 (390)
++++.|+.++..+. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQL---CALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHH---HHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHH---HHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 45667788887777 9999999999999999999999999999999999999999999985
No 5
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.30 E-value=4.5e-13 Score=102.68 Aligned_cols=65 Identities=31% Similarity=0.450 Sum_probs=58.5
Q ss_pred cccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhcc
Q psy8148 316 RQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAKN 383 (390)
Q Consensus 316 R~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~~ 383 (390)
+++.|+.++..+. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+.....+.
T Consensus 2 ~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~~~ 66 (68)
T 1zq3_P 2 PRRTRTTFTSSQI---AELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKD 66 (68)
T ss_dssp CSCCSCCCCHHHH---HHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCcCHHHH---HHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccccc
Confidence 4567788887777 9999999999999999999999999999999999999999999997766554
No 6
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=4.4e-13 Score=105.76 Aligned_cols=69 Identities=28% Similarity=0.422 Sum_probs=62.0
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhccCCC
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAKNRTF 386 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~~~~~ 386 (390)
+++|.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+...++.++.-
T Consensus 6 ~~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~~~~ 74 (80)
T 2dmq_A 6 SGKRMRTSFKHHQL---RTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGV 74 (80)
T ss_dssp CCCCCCCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSCCCSS
T ss_pred CCCCCCCCCCHHHH---HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHhcCCC
Confidence 45667788887777 9999999999999999999999999999999999999999999998887777654
No 7
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=5.7e-13 Score=105.24 Aligned_cols=68 Identities=31% Similarity=0.501 Sum_probs=60.4
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhccCC
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAKNRT 385 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~~~~ 385 (390)
+.+|.|+.++..|. ..|+..|..++||+..++.+||..+||++.+|++||+|||+|+|+......++.
T Consensus 6 ~~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~~~~ 73 (80)
T 2dms_A 6 SGRRERTTFTRAQL---DVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGG 73 (80)
T ss_dssp CCCCCCSSCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCCCCC
T ss_pred CCCCCCCCCCHHHH---HHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccCCCC
Confidence 45667788887777 999999999999999999999999999999999999999999999877666554
No 8
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.28 E-value=2.5e-12 Score=97.20 Aligned_cols=57 Identities=32% Similarity=0.575 Sum_probs=52.6
Q ss_pred CccccccCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCC
Q psy8148 265 EETVYCFKERSRNALKECY---DKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 321 (390)
Q Consensus 265 e~t~~~Fs~~q~~~Le~~F---~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~ 321 (390)
......|+..++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|+|.|.
T Consensus 4 rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 4 HIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 3445578999999999999 89999999999999999999999999999999999875
No 9
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.27 E-value=7.9e-13 Score=101.84 Aligned_cols=61 Identities=26% Similarity=0.564 Sum_probs=55.6
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
+.++.|+.++..|. ..|+..|..++||+..++.+||..+||++.+|++||+|||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQL---RELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHH---HHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45567788887777 99999999999999999999999999999999999999999999854
No 10
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.26 E-value=7.5e-13 Score=100.73 Aligned_cols=61 Identities=33% Similarity=0.578 Sum_probs=55.6
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
++++.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+..
T Consensus 2 k~rr~Rt~ft~~q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQL---HTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHH---HHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHH---HHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 35667888887777 99999999999999999999999999999999999999999999854
No 11
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.26 E-value=8.1e-13 Score=102.71 Aligned_cols=65 Identities=28% Similarity=0.547 Sum_probs=57.5
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhc
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAK 382 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~ 382 (390)
+.++.|+.++..|. ..|+..|..++||+..++.+||..+||++.+|++||||||+|+|+.....+
T Consensus 6 ~~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (73)
T 2l7z_A 6 EGRKKRVPYTKVQL---KELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 70 (73)
T ss_dssp CCCCCCCCSCHHHH---HHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSSS
T ss_pred CCCCCCCCCCHHHH---HHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcccC
Confidence 34566777887777 999999999999999999999999999999999999999999999765543
No 12
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.5e-12 Score=100.28 Aligned_cols=61 Identities=30% Similarity=0.439 Sum_probs=55.5
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
..++.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQL---AALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHH---HHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHH---HHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 45567788887777 99999999999999999999999999999999999999999999854
No 13
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.24 E-value=3.6e-12 Score=99.01 Aligned_cols=63 Identities=25% Similarity=0.506 Sum_probs=57.1
Q ss_pred cCCCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 262 WDGEETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 262 ~dge~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
..+.+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+++|....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 345556678999999999999999999999999999999999999999999999999987644
No 14
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.24 E-value=1.9e-12 Score=96.94 Aligned_cols=55 Identities=31% Similarity=0.529 Sum_probs=51.2
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCC
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 321 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~ 321 (390)
....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||++.|.
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 6 PRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4457999999999999999999999999999999999999999999999998775
No 15
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.24 E-value=7e-13 Score=100.07 Aligned_cols=59 Identities=25% Similarity=0.403 Sum_probs=53.2
Q ss_pred cccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccch
Q psy8148 316 RQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 377 (390)
Q Consensus 316 R~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~ 377 (390)
.++.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQL---LELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHH---HHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4566778887777 9999999999999999999999999999999999999999999885
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.24 E-value=7.6e-13 Score=99.17 Aligned_cols=58 Identities=33% Similarity=0.531 Sum_probs=50.9
Q ss_pred cccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccc
Q psy8148 316 RQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 376 (390)
Q Consensus 316 R~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk 376 (390)
.+|.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQL---ARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHH---HHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3556777887777 999999999999999999999999999999999999999999886
No 17
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.24 E-value=9.1e-13 Score=101.33 Aligned_cols=62 Identities=31% Similarity=0.497 Sum_probs=55.7
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 379 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~ 379 (390)
++++.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 6 SGRSSRTRFTDYQL---RVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CSCCCCCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCHHHH---HHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 45567778887777 999999999999999999999999999999999999999999998543
No 18
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1e-12 Score=103.85 Aligned_cols=62 Identities=26% Similarity=0.472 Sum_probs=56.2
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
.+.++.|+.++..|+ ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+..
T Consensus 15 ~~~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQL---MGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHH---HHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 355667788887777 99999999999999999999999999999999999999999999854
No 19
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.24 E-value=5.8e-12 Score=96.97 Aligned_cols=59 Identities=24% Similarity=0.501 Sum_probs=54.3
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+++|....
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 9 KKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 34557999999999999999999999999999999999999999999999999987643
No 20
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.24 E-value=1.9e-12 Score=100.62 Aligned_cols=66 Identities=18% Similarity=0.415 Sum_probs=60.1
Q ss_pred CCcccCCCccccccCHHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 258 PKTIWDGEETVYCFKERSRNALKECY-DKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 258 P~ti~dge~t~~~Fs~~q~~~Le~~F-~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
|-.++.|......++..|+.+|+..| ..++||+..++.+||..+||++.||++||+|||+++|...
T Consensus 2 P~~~~~g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 2 SSGSSGGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 55667777777788899999999999 9999999999999999999999999999999999998754
No 21
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.23 E-value=5.9e-13 Score=101.99 Aligned_cols=64 Identities=30% Similarity=0.518 Sum_probs=57.2
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRA 381 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~ 381 (390)
++++.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+.....
T Consensus 2 ~~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQL---QQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHH---HHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHH---HHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 45667788887777 99999999999999999999999999999999999999999999865443
No 22
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.23 E-value=6.7e-13 Score=101.81 Aligned_cols=61 Identities=26% Similarity=0.435 Sum_probs=55.5
Q ss_pred cccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhh
Q psy8148 316 RQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 379 (390)
Q Consensus 316 R~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~ 379 (390)
+++.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQT---LELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHH---HHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHH---HHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4567788887777 999999999999999999999999999999999999999999998653
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.23 E-value=9e-13 Score=97.63 Aligned_cols=56 Identities=32% Similarity=0.508 Sum_probs=51.6
Q ss_pred cCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccc
Q psy8148 318 RDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 376 (390)
Q Consensus 318 R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk 376 (390)
|.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+
T Consensus 2 r~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 2 KPRTPFTTAQL---LALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCHHHH---HHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHH---HHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 45677777777 999999999999999999999999999999999999999999876
No 24
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.23 E-value=1.6e-12 Score=95.89 Aligned_cols=57 Identities=32% Similarity=0.545 Sum_probs=52.1
Q ss_pred cccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCcccccccccccccccc
Q psy8148 316 RQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 375 (390)
Q Consensus 316 R~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~k 375 (390)
+++.|+.++..+. ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQV---YELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHH---HHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHH---HHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 4566788887777 99999999999999999999999999999999999999999875
No 25
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.23 E-value=1.6e-12 Score=102.72 Aligned_cols=65 Identities=25% Similarity=0.460 Sum_probs=58.1
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhc
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAK 382 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~ 382 (390)
.+++.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+......
T Consensus 6 ~~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (80)
T 2cue_A 6 SGQRNRTSFTQEQI---EALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 70 (80)
T ss_dssp SSCCCCCCSCHHHH---HHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHH---HHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhh
Confidence 45667788887777 999999999999999999999999999999999999999999999765443
No 26
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.23 E-value=4.4e-12 Score=96.46 Aligned_cols=56 Identities=32% Similarity=0.613 Sum_probs=52.6
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
....|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|+++|..
T Consensus 6 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 6 VRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 44579999999999999999999999999999999999999999999999998864
No 27
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.23 E-value=9.8e-13 Score=98.40 Aligned_cols=59 Identities=24% Similarity=0.481 Sum_probs=46.8
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCcccccccccccccccc
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 375 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~k 375 (390)
.+..+.|+.++..+. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~---~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQAR---AFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHH---HHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 345566777887777 99999999999999999999999999999999999999999875
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.23 E-value=1e-12 Score=100.68 Aligned_cols=62 Identities=24% Similarity=0.448 Sum_probs=56.1
Q ss_pred cccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhh
Q psy8148 316 RQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380 (390)
Q Consensus 316 R~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r 380 (390)
+++.|+.++..+. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+....
T Consensus 2 ~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQV---YELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHH---HHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHH---HHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 4567788887777 9999999999999999999999999999999999999999999986543
No 29
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.23 E-value=1.5e-12 Score=102.17 Aligned_cols=65 Identities=26% Similarity=0.503 Sum_probs=57.8
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhh
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRA 381 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~ 381 (390)
.++++.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+.....
T Consensus 7 ~~~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQT---YELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCCCHHHH---HHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCccCCHHHH---HHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 456667888887777 99999999999999999999999999999999999999999999865443
No 30
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.23 E-value=1.6e-12 Score=103.52 Aligned_cols=62 Identities=26% Similarity=0.491 Sum_probs=56.8
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
.++++.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+..
T Consensus 20 ~~~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQL---CVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHH---HHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHH---HHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 456677888888777 99999999999999999999999999999999999999999999854
No 31
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.23 E-value=3.4e-12 Score=95.47 Aligned_cols=54 Identities=28% Similarity=0.491 Sum_probs=48.0
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCC
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R 320 (390)
....|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|+|++.|
T Consensus 8 ~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 8 GKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 345799999999999999999999999999999999999999999999998865
No 32
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.23 E-value=3e-12 Score=95.57 Aligned_cols=55 Identities=25% Similarity=0.512 Sum_probs=49.9
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 268 VYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 268 ~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
...|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+|.|..
T Consensus 3 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp --CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 3469999999999999999999999999999999999999999999999998764
No 33
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.23 E-value=2.4e-12 Score=94.91 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=49.2
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCC
Q psy8148 269 YCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 321 (390)
Q Consensus 269 ~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~ 321 (390)
..|+..|+..|+..|..++||+..++..||..+||++.||.+||+|||.|.|.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 46899999999999999999999999999999999999999999999998764
No 34
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-12 Score=100.76 Aligned_cols=62 Identities=29% Similarity=0.475 Sum_probs=55.5
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 379 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~ 379 (390)
..+|.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQL---EALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHH---HHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 34566788887777 999999999999999999999999999999999999999999988543
No 35
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.22 E-value=2.4e-12 Score=102.07 Aligned_cols=60 Identities=13% Similarity=0.271 Sum_probs=55.0
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcC----CCCCCHHHHHHHHHhhCCCccccccccccccccccc
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDK----NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 376 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~----n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk 376 (390)
.+++|.|+.++..|. ..|+..|+. ++||+..++++||..+||++.+|++||||||+|.++
T Consensus 15 ~~~rR~Rt~ft~~Ql---~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQK---ERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHH---HHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHH---HHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 356677888888777 999999999 999999999999999999999999999999999986
No 36
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.22 E-value=1.5e-12 Score=102.32 Aligned_cols=59 Identities=19% Similarity=0.382 Sum_probs=51.9
Q ss_pred CCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhh
Q psy8148 319 DRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380 (390)
Q Consensus 319 ~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r 380 (390)
.+..++..|+ .+|++.|..++||+..++++||..+||++.+|++||+|+|+|+|+..-+
T Consensus 6 ~r~kfT~~Ql---~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 6 SGKRKTKEQL---AILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHH---HHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 3445666666 9999999999999999999999999999999999999999999886533
No 37
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.22 E-value=6.7e-12 Score=97.46 Aligned_cols=64 Identities=28% Similarity=0.413 Sum_probs=57.8
Q ss_pred ccCCCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 261 IWDGEETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 261 i~dge~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
+++.......|+..|+.+|+..|..++||+..++..||..+||+..||.+||+|||.+.|....
T Consensus 3 ~~~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 3 MPDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 4455566678999999999999999999999999999999999999999999999999987644
No 38
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.21 E-value=1.1e-12 Score=100.98 Aligned_cols=61 Identities=21% Similarity=0.485 Sum_probs=55.6
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
+.++.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQL---RVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHH---HHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHH---HHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45667788887777 99999999999999999999999999999999999999999999854
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.21 E-value=1.9e-12 Score=98.83 Aligned_cols=61 Identities=26% Similarity=0.489 Sum_probs=54.7
Q ss_pred ccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhh
Q psy8148 317 QRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380 (390)
Q Consensus 317 ~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r 380 (390)
++.|+.++..+. ..|+..|..++||+..++..||..+||+..+|++||+|||+|+|+....
T Consensus 2 rr~Rt~ft~~q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQI---EVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHH---HHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHH---HHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 356777887777 9999999999999999999999999999999999999999999986543
No 40
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.21 E-value=5.2e-12 Score=94.87 Aligned_cols=55 Identities=29% Similarity=0.526 Sum_probs=51.0
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCC
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 321 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~ 321 (390)
....|+..|+.+|+..|..++||+..++..||..+||++.+|.+||+|||+++|.
T Consensus 6 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 6 MRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp --CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 3457999999999999999999999999999999999999999999999999876
No 41
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.21 E-value=1.5e-12 Score=102.44 Aligned_cols=62 Identities=26% Similarity=0.370 Sum_probs=56.4
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
.+++|.|+.++..|+ ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+..
T Consensus 15 ~~~rr~Rt~ft~~Ql---~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQL---EILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTH---HHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHH---HHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 456677888887777 99999999999999999999999999999999999999999999854
No 42
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.21 E-value=1.3e-12 Score=97.57 Aligned_cols=57 Identities=26% Similarity=0.451 Sum_probs=52.3
Q ss_pred cCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccch
Q psy8148 318 RDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 377 (390)
Q Consensus 318 R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~ 377 (390)
|.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+.
T Consensus 3 r~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 3 RYRTAFTRDQL---GRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp CCCCCCCHHHH---HHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHH---HHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 55677777776 9999999999999999999999999999999999999999998874
No 43
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.21 E-value=3.3e-12 Score=100.29 Aligned_cols=54 Identities=19% Similarity=0.347 Sum_probs=50.9
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 269 YCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 269 ~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
..|+.+|+.+|+.+|..++||+..++.+||..|||+..||.+||+|+|+|.|..
T Consensus 8 ~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 8 KRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 358999999999999999999999999999999999999999999999988754
No 44
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.21 E-value=4.1e-12 Score=95.96 Aligned_cols=58 Identities=31% Similarity=0.581 Sum_probs=52.2
Q ss_pred cccCCCcchhhhhhhhhhhhhhh---cCCCCCCHHHHHHHHHhhCCCccccccccccccccccc
Q psy8148 316 RQRDRTPQQRSIQRSRNALKECY---DKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 376 (390)
Q Consensus 316 R~R~R~~~t~~q~~q~~~Le~~F---~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk 376 (390)
..+.|+.++..+. ..|+..| ..++||+..++.+||..+||+..+|++||+|+|+|+|+
T Consensus 3 ~rr~R~~ft~~q~---~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQAT---EILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHH---HHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHH---HHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 3456677776666 9999999 99999999999999999999999999999999999987
No 45
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=7.5e-12 Score=96.33 Aligned_cols=58 Identities=28% Similarity=0.448 Sum_probs=53.9
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+++|...
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 9 KPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 3455799999999999999999999999999999999999999999999999998754
No 46
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.21 E-value=1.1e-12 Score=100.10 Aligned_cols=50 Identities=26% Similarity=0.527 Sum_probs=46.5
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 329 RSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 329 ~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
.|+..|+..|..++||+..++.+||..+||+.++|++||||||+|+|+..
T Consensus 14 ~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 14 EQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp HHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 34599999999999999999999999999999999999999999998743
No 47
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.21 E-value=1.5e-12 Score=105.93 Aligned_cols=68 Identities=26% Similarity=0.439 Sum_probs=59.5
Q ss_pred ccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhcc
Q psy8148 313 KNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAKN 383 (390)
Q Consensus 313 qNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~~ 383 (390)
..++++.|+.++..+. ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+....++.
T Consensus 14 ~~~~rr~Rt~ft~~Ql---~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~ 81 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQV---AELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEERE 81 (93)
T ss_dssp CCCCCCCCCCCCHHHH---HHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCCCcCCCHHHH---HHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHH
Confidence 3456677888888777 9999999999999999999999999999999999999999999997765543
No 48
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.21 E-value=3.9e-12 Score=94.19 Aligned_cols=54 Identities=30% Similarity=0.439 Sum_probs=50.5
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCC
Q psy8148 268 VYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 321 (390)
Q Consensus 268 ~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~ 321 (390)
...|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|+|++.|.
T Consensus 4 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 4 RTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 346999999999999999999999999999999999999999999999988753
No 49
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.20 E-value=4.3e-12 Score=94.67 Aligned_cols=54 Identities=28% Similarity=0.482 Sum_probs=50.7
Q ss_pred cccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 269 YCFKERSRNALKECYDK---NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 269 ~~Fs~~q~~~Le~~F~~---n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
..|+..|+.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|+|.|..
T Consensus 3 ~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 3 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 36899999999999999 9999999999999999999999999999999988753
No 50
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.20 E-value=4.6e-12 Score=96.62 Aligned_cols=58 Identities=24% Similarity=0.481 Sum_probs=53.6
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|+|++.|....
T Consensus 4 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 4 PRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 3457999999999999999999999999999999999999999999999999887654
No 51
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.20 E-value=1.6e-12 Score=97.09 Aligned_cols=56 Identities=23% Similarity=0.463 Sum_probs=48.1
Q ss_pred CCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 320 RTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 320 R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+..
T Consensus 3 Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 3 HMTFTSFQL---EELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp --CCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CcccCHHHH---HHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 456666666 99999999999999999999999999999999999999999999854
No 52
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.20 E-value=2.1e-12 Score=101.35 Aligned_cols=69 Identities=26% Similarity=0.499 Sum_probs=59.0
Q ss_pred ccccccc-cccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhh
Q psy8148 309 SNWFKNR-RQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380 (390)
Q Consensus 309 ~~WFqNR-R~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r 380 (390)
.+|...+ +++.|+.++..|. ..|+..|..++||+..++.+||..+||++.+|++||||||+|+|+..+.
T Consensus 5 ~~~~~~~~~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 5 ANWLHARSTRKKRCPYTKHQT---LELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TTSCCCCTTSCCCCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHH---HHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 4555554 3456777887777 9999999999999999999999999999999999999999999986643
No 53
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.20 E-value=6.5e-12 Score=92.62 Aligned_cols=54 Identities=31% Similarity=0.541 Sum_probs=50.3
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCC
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R 320 (390)
....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|+|+|.|
T Consensus 5 ~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 5 PRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 345689999999999999999999999999999999999999999999998864
No 54
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.19 E-value=2.3e-12 Score=101.99 Aligned_cols=65 Identities=29% Similarity=0.583 Sum_probs=57.1
Q ss_pred cccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhh
Q psy8148 312 FKNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 379 (390)
Q Consensus 312 FqNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~ 379 (390)
...++++.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+...
T Consensus 14 ~~~~~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQL---DELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHH---HHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 34567778888888777 999999999999999999999999999999999999999999998653
No 55
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.19 E-value=1.5e-12 Score=96.03 Aligned_cols=48 Identities=27% Similarity=0.460 Sum_probs=45.5
Q ss_pred hhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccch
Q psy8148 330 SRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 377 (390)
Q Consensus 330 q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~ 377 (390)
|+..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+.
T Consensus 8 Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 8 QVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 349999999999999999999999999999999999999999999874
No 56
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.19 E-value=5.2e-12 Score=95.24 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=51.5
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCC
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 321 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~ 321 (390)
....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||++.|.
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 60 (63)
T 2h1k_A 6 TRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60 (63)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhh
Confidence 4457999999999999999999999999999999999999999999999998764
No 57
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.19 E-value=9.2e-12 Score=95.69 Aligned_cols=57 Identities=32% Similarity=0.558 Sum_probs=53.1
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||++.|...
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 10 SRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 445799999999999999999999999999999999999999999999999988753
No 58
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.19 E-value=3.3e-12 Score=99.08 Aligned_cols=62 Identities=32% Similarity=0.582 Sum_probs=55.1
Q ss_pred ccCCCcchhhhhhhhhhhhhhh---cCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhh
Q psy8148 317 QRDRTPQQRSIQRSRNALKECY---DKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRA 381 (390)
Q Consensus 317 ~R~R~~~t~~q~~q~~~Le~~F---~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~ 381 (390)
+|.|+.++..+. ..|+..| ..++||+..++..||..+||+..+|++||+|+|+|+|+.....
T Consensus 2 rr~R~~ft~~q~---~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQAT---EILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHH---HHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHH---HHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 456777777666 9999999 9999999999999999999999999999999999998866554
No 59
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.19 E-value=2.3e-12 Score=99.21 Aligned_cols=61 Identities=23% Similarity=0.467 Sum_probs=54.6
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
...+.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQT---IELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHH---HHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34556777887777 99999999999999999999999999999999999999999998854
No 60
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.18 E-value=2.2e-12 Score=99.58 Aligned_cols=54 Identities=28% Similarity=0.453 Sum_probs=49.4
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhc
Q psy8148 329 RSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAK 382 (390)
Q Consensus 329 ~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~ 382 (390)
.|+..|+..|..++||+..++.+||..+||++.+|++||||||+|+|+.....+
T Consensus 14 ~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~~ 67 (69)
T 2l9r_A 14 TQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSE 67 (69)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhhh
Confidence 455999999999999999999999999999999999999999999999765554
No 61
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.18 E-value=2.1e-12 Score=102.41 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=52.7
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
.++|.|+.++..+. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQT---LELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHH---HHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45667888888777 99999999999999999999999999999999999999999999854
No 62
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.18 E-value=6.1e-12 Score=97.37 Aligned_cols=58 Identities=28% Similarity=0.424 Sum_probs=53.3
Q ss_pred CccccccCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 265 EETVYCFKERSRNALKECYDK-NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 265 e~t~~~Fs~~q~~~Le~~F~~-n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
.++...|+..|+.+|+..|.. ++||+..++..||..+||++.||.+||+|||+++|..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~ 60 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhh
Confidence 345567999999999999996 9999999999999999999999999999999998764
No 63
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.18 E-value=5.9e-12 Score=93.96 Aligned_cols=54 Identities=22% Similarity=0.436 Sum_probs=50.7
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCC
Q psy8148 268 VYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 321 (390)
Q Consensus 268 ~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~ 321 (390)
...|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|+|++.|.
T Consensus 5 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 5 RTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 346999999999999999999999999999999999999999999999988764
No 64
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.18 E-value=5.3e-12 Score=100.09 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=53.6
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcC-----CCCCCHHHHHHHHHhhCCCccccccccccccccccc
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDK-----NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 376 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~-----n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk 376 (390)
.+++|.|+.++..|. ..|+ .|.. ++||+..++++||..+||++.+|++||||||+|+++
T Consensus 15 ~~~rR~Rt~ft~~Ql---~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQK---EKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHH---HHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHH---HHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 356677888888777 8999 7998 999999999999999999999999999999999986
No 65
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.18 E-value=2.9e-12 Score=102.99 Aligned_cols=61 Identities=26% Similarity=0.425 Sum_probs=53.2
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
..+|.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+..
T Consensus 27 ~~rr~Rt~ft~~Ql---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQT---LELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHH---HHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHH---HHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 45667788887777 99999999999999999999999999999999999999999998854
No 66
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.18 E-value=3.1e-12 Score=99.05 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=53.4
Q ss_pred cCCCcchhhhhhhhhhhhhhhcC-CCCCCHHHHHHHHHhhCCCccccccccccccccccchhh
Q psy8148 318 RDRTPQQRSIQRSRNALKECYDK-NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 379 (390)
Q Consensus 318 R~R~~~t~~q~~q~~~Le~~F~~-n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~ 379 (390)
+.|+.++..|. ..|+..|.. ++||+..++.+||..+||++.+|++||+|||+|+|+...
T Consensus 3 k~Rt~ft~~Q~---~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 3 EGAATMTEDQV---EILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCHHHH---HHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCccCCHHHH---HHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 45677777776 999999996 999999999999999999999999999999999998663
No 67
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.18 E-value=2.9e-12 Score=99.55 Aligned_cols=63 Identities=30% Similarity=0.533 Sum_probs=56.4
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhh
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 379 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~ 379 (390)
.++++.|+.++..+. ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+...
T Consensus 7 ~~~rr~Rt~ft~~q~---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQL---EELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCCCSCSCSSCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHH---HHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 345666788887777 999999999999999999999999999999999999999999998544
No 68
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=8.7e-12 Score=95.87 Aligned_cols=58 Identities=28% Similarity=0.505 Sum_probs=53.2
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+|+|...
T Consensus 9 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 9 RHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 3455799999999999999999999999999999999999999999999999987643
No 69
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=3.4e-12 Score=99.75 Aligned_cols=60 Identities=20% Similarity=0.407 Sum_probs=52.5
Q ss_pred CcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhcc
Q psy8148 321 TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAKN 383 (390)
Q Consensus 321 ~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~~ 383 (390)
+.++..|+ ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+......+
T Consensus 12 ~~~t~~Ql---~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~~~ 71 (75)
T 2da5_A 12 KERAPEQL---RALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKKSG 71 (75)
T ss_dssp CCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSSCC
T ss_pred ccCCHHHH---HHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhcccC
Confidence 34555555 9999999999999999999999999999999999999999999987655443
No 70
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.17 E-value=8e-12 Score=96.03 Aligned_cols=58 Identities=17% Similarity=0.456 Sum_probs=53.4
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|+|++.|...
T Consensus 9 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 9 RPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 3455799999999999999999999999999999999999999999999999987653
No 71
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.6e-11 Score=96.90 Aligned_cols=58 Identities=26% Similarity=0.491 Sum_probs=53.6
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+|.|...
T Consensus 19 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 19 RSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3445799999999999999999999999999999999999999999999999988754
No 72
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.17 E-value=1e-11 Score=95.57 Aligned_cols=57 Identities=26% Similarity=0.531 Sum_probs=52.6
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+|+|..
T Consensus 9 r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 9 GGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 344579999999999999999999999999999999999999999999999998754
No 73
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.16 E-value=5.9e-12 Score=100.35 Aligned_cols=65 Identities=31% Similarity=0.468 Sum_probs=55.5
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcC---CCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhc
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDK---NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAK 382 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~---n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~ 382 (390)
++++.|+.++..+. ..|+.+|.. ++||+..++.+||..+||+..||++||+|+|+|.++....+.
T Consensus 6 ~~rk~R~~~s~~q~---~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~~ 73 (83)
T 2dmn_A 6 SGKKRKGNLPAESV---KILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQR 73 (83)
T ss_dssp CCCCCCSSCCHHHH---HHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCCC
T ss_pred CCCCCCCcCCHHHH---HHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHhc
Confidence 45566777777776 889998865 699999999999999999999999999999999988765543
No 74
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.1e-12 Score=101.93 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=56.2
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCC----CCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKN----RYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n----~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
.++++.|+.++..|. ..|+..|..+ +||+..++.+||..+||+..+|++||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~---~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDL---ATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHH---HHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHH---HHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 456677888888777 9999999999 9999999999999999999999999999999998843
No 75
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=4.3e-12 Score=98.55 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=53.4
Q ss_pred cCCCcchhhhhhhhhhhhhhhc-CCCCCCHHHHHHHHHhhCCCccccccccccccccccchhh
Q psy8148 318 RDRTPQQRSIQRSRNALKECYD-KNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 379 (390)
Q Consensus 318 R~R~~~t~~q~~q~~~Le~~F~-~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~ 379 (390)
+.|+.++..|. ..|+..|. .++||+..++.+||..+||++.+|++||+|||+|+|+...
T Consensus 4 k~Rt~ft~~Q~---~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 4 QTVSGPTEDQV---EILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp SCCSSCCHHHH---HHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHH---HHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 55677777777 99999999 4999999999999999999999999999999999998664
No 76
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.8e-11 Score=95.79 Aligned_cols=57 Identities=28% Similarity=0.509 Sum_probs=53.4
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 268 VYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 268 ~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
...|+..|+.+|+..|..++||+..++..||..+||+..||.+||+|||++.|....
T Consensus 12 R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 12 KNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 456999999999999999999999999999999999999999999999999987644
No 77
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.15 E-value=2.6e-11 Score=96.06 Aligned_cols=57 Identities=9% Similarity=0.237 Sum_probs=52.9
Q ss_pred ccccccCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 266 ETVYCFKERSRNALKECYDK----NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~----n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
+....|+..|+..|+..|.. ++||+..++.+||..+||++.||++||+|||+|.|.+
T Consensus 19 R~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 19 RHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 34457999999999999999 9999999999999999999999999999999998864
No 78
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=4.8e-12 Score=99.02 Aligned_cols=60 Identities=27% Similarity=0.530 Sum_probs=53.9
Q ss_pred CCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhh
Q psy8148 319 DRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRA 381 (390)
Q Consensus 319 ~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~ 381 (390)
.|+.++..|+ ..|+..|..++||+..++.+||..+||+..+|++||+|||+|+|+.....
T Consensus 11 ~R~~ft~~Ql---~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 11 YKNKKSHEQL---SALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCHHHH---HHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCccCCHHHH---HHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 4677777776 99999999999999999999999999999999999999999999965443
No 79
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.14 E-value=5.9e-12 Score=101.83 Aligned_cols=58 Identities=14% Similarity=0.312 Sum_probs=50.8
Q ss_pred cchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhc
Q psy8148 322 PQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAK 382 (390)
Q Consensus 322 ~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~ 382 (390)
.++..|+ .+|+..|..++||+..++.+||..+||++.+|++||||||+|+++.....+
T Consensus 17 ~~t~~Ql---~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 17 EKTAEQL---RVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred cCCHHHH---HHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhh
Confidence 4455555 999999999999999999999999999999999999999999988555443
No 80
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.14 E-value=3e-11 Score=96.00 Aligned_cols=58 Identities=26% Similarity=0.499 Sum_probs=54.0
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+|+|...
T Consensus 24 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 24 KTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3455799999999999999999999999999999999999999999999999998754
No 81
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.14 E-value=5.4e-12 Score=97.83 Aligned_cols=62 Identities=32% Similarity=0.497 Sum_probs=54.4
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcC---CCCCCHHHHHHHHHhhCCCccccccccccccccccchhh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDK---NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 379 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~---n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~ 379 (390)
++++.|+.++..+. ..|+..|.. ++||+..++.+||..+||+..+|++||+|+|+|+++...
T Consensus 6 ~~rr~R~~~~~~q~---~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 6 SGKNKRGVLPKHAT---NVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSCCSSCCCCHHHH---HHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCcCCHHHH---HHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 45566777777776 999999965 999999999999999999999999999999999988654
No 82
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.14 E-value=3.1e-11 Score=107.47 Aligned_cols=139 Identities=16% Similarity=0.298 Sum_probs=86.3
Q ss_pred hcCChhHHHHHHHcCCCccccccchhhhhhHHHHHHhhhcHHHHHHHHhcCCCCccc-----------------hHHHHH
Q psy8148 163 QSGDFDKLAMFLWSLPPQEAIRGQESVLRARAVVAYKRHAFHELYAILESHNFDSKY-----------------HAELQQ 225 (390)
Q Consensus 163 ~~~~~~~l~~fl~~lp~~~~~~~~e~v~rAra~v~~h~~~f~el~~~L~~~~F~~~~-----------------h~~lq~ 225 (390)
+.+|++.|..|-+.+.. .|....+.+.+...++..|.+..|+... .+.|+
T Consensus 2 ~~~~~~~~~~~~~~~k~------------~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL~- 68 (160)
T 1e3o_C 2 EPSDLEELEQFAKTFKQ------------RRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLE- 68 (160)
T ss_dssp CSCCHHHHHHHHHHHHH------------HHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHH-
T ss_pred CCCcHHHHHHHHHHHHH------------HHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcchhHH-
Confidence 45788888888776633 2445566777777777888777776421 12222
Q ss_pred HHHh-hhhhHH-HhhhCCCCCcccccccccCCCCCCcccCCCccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCC
Q psy8148 226 LWMR-GHYKEH-AKIRGRDLGAVDKYRIRKKFPLPKTIWDGEETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGL 303 (390)
Q Consensus 226 lw~~-ahY~e~-e~~rgrpL~~v~kyr~Rkk~p~P~ti~dge~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgL 303 (390)
.|++ +.-... ....+.+ +.+.. |.........+.+..|+..|+.+|+..|..++||+..++..||..+||
T Consensus 69 ~WL~e~e~~~~~~~~~~s~-~~~~~-------~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L 140 (160)
T 1e3o_C 69 KWLNDAEANLSSDSSLSSP-SALNS-------PGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNM 140 (160)
T ss_dssp HHHHHHC------------------------------------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTC
T ss_pred HHHHhhhcccccCCCCCCC-CCcCC-------CCCCCCCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCC
Confidence 4443 211100 0000000 00000 000000112345567999999999999999999999999999999999
Q ss_pred CchhcccccccccccCCCc
Q psy8148 304 TLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 304 s~~QV~~WFqNRR~R~R~~ 322 (390)
++.||++||+|||+|.|+.
T Consensus 141 ~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 141 EKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp CHHHHHHHHHHHHHHHTSC
T ss_pred ChHHhhHhhHHhhhhhhcc
Confidence 9999999999999998863
No 83
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.14 E-value=7.3e-12 Score=100.24 Aligned_cols=62 Identities=32% Similarity=0.582 Sum_probs=54.4
Q ss_pred ccCCCcchhhhhhhhhhhhhhh---cCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhh
Q psy8148 317 QRDRTPQQRSIQRSRNALKECY---DKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRA 381 (390)
Q Consensus 317 ~R~R~~~t~~q~~q~~~Le~~F---~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~ 381 (390)
+|.|+.++..+. ..|+..| ..++||+..++.+||..+||+..+|++||+|||+|+|+.....
T Consensus 2 rr~R~~ft~~q~---~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQAT---EILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHH---HHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHH---HHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 456777777666 9999999 8999999999999999999999999999999999998865443
No 84
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.14 E-value=6.7e-12 Score=97.50 Aligned_cols=61 Identities=30% Similarity=0.498 Sum_probs=54.6
Q ss_pred ccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhh
Q psy8148 317 QRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380 (390)
Q Consensus 317 ~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r 380 (390)
.+.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+....
T Consensus 7 ~~~Rt~ft~~Ql---~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 7 FGIRAKKTKEQL---AELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCTTCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCcCCCHHHH---HHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 456777777777 9999999999999999999999999999999999999999999986543
No 85
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.14 E-value=1.1e-11 Score=94.89 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=52.1
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
....|+..|+..|+..|..++||+..++..||..+||++.||.+||+|||++.|..
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 5 GRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp TTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 34569999999999999999999999999999999999999999999999988754
No 86
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.14 E-value=1.4e-11 Score=94.32 Aligned_cols=56 Identities=30% Similarity=0.449 Sum_probs=52.2
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
....|+..|+.+|+..|..++||+..++..||..+||++.+|.+||+|||++.|..
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 5 TRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 34579999999999999999999999999999999999999999999999998764
No 87
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.13 E-value=1.3e-11 Score=95.58 Aligned_cols=58 Identities=33% Similarity=0.608 Sum_probs=53.0
Q ss_pred ccccCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchh
Q psy8148 268 VYCFKERSRNALKECY---DKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 325 (390)
Q Consensus 268 ~~~Fs~~q~~~Le~~F---~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~ 325 (390)
...|+..++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|+|.|.....
T Consensus 5 R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 3468999999999999 899999999999999999999999999999999998765443
No 88
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.13 E-value=1.4e-11 Score=94.25 Aligned_cols=56 Identities=25% Similarity=0.453 Sum_probs=52.2
Q ss_pred ccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 268 VYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 268 ~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
...|+..|+.+|+..|..++||+..++..||..+||++.+|.+||+|||.+.|...
T Consensus 6 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 6 RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 34699999999999999999999999999999999999999999999999987654
No 89
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.13 E-value=1.8e-11 Score=96.59 Aligned_cols=58 Identities=22% Similarity=0.477 Sum_probs=53.6
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+|+|...
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 9 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp CCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 4455799999999999999999999999999999999999999999999999988754
No 90
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.13 E-value=1.1e-11 Score=94.59 Aligned_cols=50 Identities=26% Similarity=0.559 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCC
Q psy8148 272 KERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 321 (390)
Q Consensus 272 s~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~ 321 (390)
+..|+.+|+..|..++||+..++.+||..+|||.+||++||+|||.+.|.
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 46899999999999999999999999999999999999999999988764
No 91
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.13 E-value=2e-11 Score=96.03 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=53.3
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+|.|...
T Consensus 19 r~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 19 RLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp TCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 3445799999999999999999999999999999999999999999999999987753
No 92
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.12 E-value=2.3e-11 Score=97.48 Aligned_cols=54 Identities=28% Similarity=0.477 Sum_probs=50.9
Q ss_pred ccccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCchhcccccccccccCCC
Q psy8148 268 VYCFKERSRNALKECYDK---NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 321 (390)
Q Consensus 268 ~~~Fs~~q~~~Le~~F~~---n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~ 321 (390)
...|+..|+.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|+|.|.
T Consensus 31 r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 31 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 347999999999999999 999999999999999999999999999999998874
No 93
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.12 E-value=8.5e-12 Score=94.85 Aligned_cols=48 Identities=17% Similarity=0.475 Sum_probs=44.7
Q ss_pred hhhhhhhhh-cCCCCCCHHHHHHHHHhhCCCccccccccccccccccch
Q psy8148 330 SRNALKECY-DKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 377 (390)
Q Consensus 330 q~~~Le~~F-~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~ 377 (390)
+..+||+.| ..++||+..++.+||..+||+++||++||||||+|+|+.
T Consensus 11 ~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 11 PNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 348999999 679999999999999999999999999999999999874
No 94
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=2.5e-11 Score=95.79 Aligned_cols=59 Identities=29% Similarity=0.473 Sum_probs=53.8
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.+|.+||+|||+|.|....
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 9 RERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 34457999999999999999999999999999999999999999999999999876543
No 95
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.12 E-value=1.7e-11 Score=94.97 Aligned_cols=56 Identities=34% Similarity=0.530 Sum_probs=51.4
Q ss_pred cccccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDK---NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~---n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
....|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|+|.+..
T Consensus 10 ~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 10 KRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 3447899999999999976 9999999999999999999999999999999988754
No 96
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.12 E-value=1.8e-11 Score=94.93 Aligned_cols=56 Identities=30% Similarity=0.418 Sum_probs=52.0
Q ss_pred cccccCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDK-NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~-n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
+...|+..|+.+|+..|.. ++||+..++..||..+||++.||.+||+|||+++|..
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~ 61 (73)
T 2hi3_A 5 TVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61 (73)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4457999999999999995 9999999999999999999999999999999998764
No 97
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.12 E-value=8.9e-12 Score=96.82 Aligned_cols=48 Identities=21% Similarity=0.608 Sum_probs=45.4
Q ss_pred hhhhhhhh-cCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 331 RNALKECY-DKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 331 ~~~Le~~F-~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
...|+..| ..++||+..++.+||..+||++.+|++||||||+|+|+..
T Consensus 20 l~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 20 NDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp TTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 38999999 9999999999999999999999999999999999999743
No 98
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.11 E-value=2.7e-11 Score=94.90 Aligned_cols=56 Identities=27% Similarity=0.493 Sum_probs=52.3
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+|.|..
T Consensus 12 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 12 RRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 44579999999999999999999999999999999999999999999999998764
No 99
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.11 E-value=7.6e-12 Score=93.28 Aligned_cols=54 Identities=26% Similarity=0.430 Sum_probs=48.5
Q ss_pred CcchhhhhhhhhhhhhhhcC---CCCCCHHHHHHHHHhhCCCccccccccccccccccch
Q psy8148 321 TPQQRSIQRSRNALKECYDK---NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 377 (390)
Q Consensus 321 ~~~t~~q~~q~~~Le~~F~~---n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~ 377 (390)
+.++..+. ..|+..|.. ++||+..++.+||..+||+..+|++||+|||+|+|+.
T Consensus 3 ~~ft~~q~---~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 3 HRFTKENV---RILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CSCCHHHH---HHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCCHHHH---HHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 45555555 999999999 9999999999999999999999999999999999873
No 100
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.11 E-value=1.9e-11 Score=93.54 Aligned_cols=55 Identities=36% Similarity=0.610 Sum_probs=49.7
Q ss_pred ccCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 270 CFKERSRNALKECYD---KNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 270 ~Fs~~q~~~Le~~F~---~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
.|+..++.+|+.+|. .++||+..++..||..+||+..||.+||+|+|+|.+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 588999999999999 9999999999999999999999999999999999877543
No 101
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.11 E-value=1e-11 Score=94.96 Aligned_cols=56 Identities=30% Similarity=0.555 Sum_probs=52.1
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|+|++.|..
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 6 QRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp SCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHH
Confidence 34579999999999999999999999999999999999999999999999998754
No 102
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.11 E-value=2.6e-11 Score=95.05 Aligned_cols=56 Identities=23% Similarity=0.367 Sum_probs=52.3
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||++.|..
T Consensus 16 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 16 KRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 44579999999999999999999999999999999999999999999999998754
No 103
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.7e-11 Score=95.43 Aligned_cols=57 Identities=28% Similarity=0.484 Sum_probs=53.0
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+|.|..
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 9 RMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 445579999999999999999999999999999999999999999999999998764
No 104
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=1.3e-11 Score=93.70 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=45.8
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccch
Q psy8148 329 RSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 377 (390)
Q Consensus 329 ~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~ 377 (390)
.|+..|+..|..++||+..++.+||..+||++.+|++||||||+|.++.
T Consensus 13 ~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 13 NLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 3459999999999999999999999999999999999999999998873
No 105
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=4.3e-11 Score=90.89 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=49.7
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 270 CFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 270 ~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
.+...|+..|+..|..++||+..++..||..+||+..+|++||+|||+|.+..
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 45688999999999999999999999999999999999999999999998764
No 106
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.10 E-value=2.7e-11 Score=95.81 Aligned_cols=56 Identities=27% Similarity=0.566 Sum_probs=52.1
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
....|+..|+.+|+.+|..++||+..++..||..+||++.||.+||+|||+|.|..
T Consensus 21 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 21 SRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 34569999999999999999999999999999999999999999999999998754
No 107
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.10 E-value=6.9e-11 Score=93.68 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=51.7
Q ss_pred ccccccCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 266 ETVYCFKERSRNALKECYDK-----NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~-----n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
+....|+..|+..|+ .|.. ++||+..++.+||..+||++.||++||+|||+|.+.+
T Consensus 19 R~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 19 RFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 345579999999999 7998 9999999999999999999999999999999998864
No 108
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.09 E-value=4.6e-11 Score=95.13 Aligned_cols=56 Identities=38% Similarity=0.513 Sum_probs=51.0
Q ss_pred cccccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDK---NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~---n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
....|+..++.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|+|.+..
T Consensus 10 ~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 10 RKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 4456899999999999987 6999999999999999999999999999999998653
No 109
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.09 E-value=2.8e-11 Score=95.86 Aligned_cols=57 Identities=19% Similarity=0.362 Sum_probs=52.1
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.+|.+||+|||+|.|..
T Consensus 22 r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 22 RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp --CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 345579999999999999999999999999999999999999999999999998764
No 110
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.09 E-value=3.9e-11 Score=93.12 Aligned_cols=58 Identities=29% Similarity=0.500 Sum_probs=53.5
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
....|+..++.+|+..|..++||+..++..||..+||++.+|.+||+|+|++.|....
T Consensus 12 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 12 NRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 3457999999999999999999999999999999999999999999999999887544
No 111
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.09 E-value=1.5e-11 Score=100.20 Aligned_cols=63 Identities=19% Similarity=0.450 Sum_probs=56.8
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhC---------------CCccccccccccccccccchhh
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITG---------------LTLTQVSNWFKNRRQRDRTPQQ 379 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lg---------------Ls~~qVk~WFqNRR~K~kk~~~ 379 (390)
+++|.|+.++..++ ..|+..|..++||+..++++||..++ |+..+|++||||||+|+|+...
T Consensus 6 ~~rr~R~~ft~~ql---~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 6 SGRGSRFTWRKECL---AVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCCCCSCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHH---HHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 45667778887776 99999999999999999999999999 9999999999999999998765
Q ss_pred h
Q psy8148 380 R 380 (390)
Q Consensus 380 r 380 (390)
.
T Consensus 83 ~ 83 (95)
T 2cuf_A 83 I 83 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 112
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.08 E-value=1.4e-11 Score=100.74 Aligned_cols=60 Identities=20% Similarity=0.424 Sum_probs=53.7
Q ss_pred cccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchh
Q psy8148 316 RQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 378 (390)
Q Consensus 316 R~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~ 378 (390)
..+.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+..
T Consensus 25 ~~r~Rt~ft~~Ql---~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQL---HMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHH---HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 4456777887777 99999999999999999999999999999999999999999999865
No 113
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.08 E-value=4.7e-11 Score=105.81 Aligned_cols=56 Identities=25% Similarity=0.429 Sum_probs=51.6
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
.++.|+..|+..|+..|..++||+..++..||..+||++.||++||+|||+|.|+.
T Consensus 99 ~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 99 KRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 34578999999999999999999999999999999999999999999999998763
No 114
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.08 E-value=3.1e-11 Score=96.53 Aligned_cols=58 Identities=33% Similarity=0.608 Sum_probs=53.3
Q ss_pred ccccCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchh
Q psy8148 268 VYCFKERSRNALKECY---DKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 325 (390)
Q Consensus 268 ~~~Fs~~q~~~Le~~F---~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~ 325 (390)
...|+..++.+|+.+| ..++||+..++..||..+||+..||.+||+|+|+|.|.....
T Consensus 5 R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp CCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 3468999999999999 899999999999999999999999999999999999876543
No 115
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.08 E-value=3e-11 Score=97.67 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=51.6
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 270 CFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 270 ~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
.|+..|+.+|+..|..++||+..++.+||..+||+..||++||+|||+|++....
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 6889999999999999999999999999999999999999999999998876544
No 116
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.08 E-value=1.8e-11 Score=98.11 Aligned_cols=60 Identities=23% Similarity=0.402 Sum_probs=53.6
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcC---CCCCCHHHHHHHHHhhCCCccccccccccccccccc
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDK---NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 376 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~---n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk 376 (390)
..+.+.|+.++..+. ..|+..|.. ++||+..++.+||..+||+..+|++||+|||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~---~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENV---RILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHH---HHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHH---HHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 445556777887777 999999999 999999999999999999999999999999999873
No 117
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.08 E-value=4.3e-11 Score=95.19 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=52.0
Q ss_pred ccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 270 CFKERSRNALKECYDK---NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 270 ~Fs~~q~~~Le~~F~~---n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
.|+..|+.+|+.+|.. ++||+..++..||..+||+..||.+||+|+|+|.|....
T Consensus 8 rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 8 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp CCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 4899999999999999 999999999999999999999999999999999987644
No 118
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.08 E-value=4.6e-11 Score=92.14 Aligned_cols=55 Identities=27% Similarity=0.437 Sum_probs=51.3
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 270 CFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 270 ~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
..+..++..|+..|..++||+..++..||..+||++.||++||+|||+|+|....
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 4578899999999999999999999999999999999999999999999987644
No 119
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.07 E-value=5.4e-11 Score=96.70 Aligned_cols=58 Identities=26% Similarity=0.418 Sum_probs=53.5
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||.|+|...
T Consensus 19 r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 19 KPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhh
Confidence 3455799999999999999999999999999999999999999999999999987653
No 120
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=4.7e-11 Score=93.19 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=51.4
Q ss_pred cccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 269 YCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 269 ~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
..|+..|+.+|+..|..++||+..++..||..+||+..||.+||+|||++.|...
T Consensus 12 ~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 12 KERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred ccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 3588999999999999999999999999999999999999999999999987654
No 121
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.07 E-value=3.6e-11 Score=96.62 Aligned_cols=57 Identities=21% Similarity=0.367 Sum_probs=52.6
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+|.|..
T Consensus 30 r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 30 RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 455679999999999999999999999999999999999999999999999998764
No 122
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.06 E-value=1.8e-11 Score=97.46 Aligned_cols=57 Identities=23% Similarity=0.354 Sum_probs=50.9
Q ss_pred CCcchhhhhhhhhhhhhhhcC---CCCCCHHHHHHHHHhhCCCccccccccccccccccchhh
Q psy8148 320 RTPQQRSIQRSRNALKECYDK---NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 379 (390)
Q Consensus 320 R~~~t~~q~~q~~~Le~~F~~---n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~ 379 (390)
++.++..+. ..|+..|.. ++||+..++.+||..+||+..+|++||+|||+|+|+...
T Consensus 6 r~rft~~q~---~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 6 GHRFTKENV---RILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp CCCCCHHHH---HHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCHHHH---HHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 344676666 999999999 999999999999999999999999999999999998653
No 123
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.06 E-value=1.5e-11 Score=110.10 Aligned_cols=65 Identities=28% Similarity=0.438 Sum_probs=51.3
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhh
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRA 381 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~ 381 (390)
.+++|.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+.....
T Consensus 97 ~~~rr~Rt~ft~~Ql---~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 161 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVK---GALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 161 (164)
T ss_dssp ---------CCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC--
T ss_pred ccCCCCceeccHHHH---HHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCC
Confidence 456667888888777 99999999999999999999999999999999999999999999966543
No 124
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.06 E-value=5.5e-11 Score=97.14 Aligned_cols=59 Identities=20% Similarity=0.426 Sum_probs=54.3
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
+....|+..|+.+|+..|..++||+..++..||..+||+..||++||+|||.|.|....
T Consensus 27 r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 27 GKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 34457999999999999999999999999999999999999999999999999988644
No 125
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.3e-11 Score=96.02 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=52.1
Q ss_pred ccccccCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHhCCCchhcccccccccccCCC
Q psy8148 266 ETVYCFKERSRNALKECYDKN----RYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 321 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n----~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~ 321 (390)
+....|+..|+.+|+.+|..+ +||+..++..||..+||++.||.+||+|||+|.|.
T Consensus 10 r~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 10 QDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp CSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhh
Confidence 344579999999999999999 99999999999999999999999999999998875
No 126
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.05 E-value=3.7e-11 Score=105.91 Aligned_cols=55 Identities=25% Similarity=0.423 Sum_probs=51.7
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCC
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 321 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~ 321 (390)
.+..|+..|+.+|+.+|..++||+..++..||..+||++.||++||+|||+|.|+
T Consensus 96 ~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 96 RRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3457999999999999999999999999999999999999999999999999875
No 127
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.04 E-value=6.1e-11 Score=90.11 Aligned_cols=51 Identities=16% Similarity=0.451 Sum_probs=46.8
Q ss_pred HHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcc
Q psy8148 273 ERSRNALKECY-DKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 273 ~~q~~~Le~~F-~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~ 323 (390)
..++.+|+..| ..++||+..++.+||..+||++.||++||+|||+++|...
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 45689999999 5799999999999999999999999999999999998653
No 128
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.03 E-value=3.2e-11 Score=105.88 Aligned_cols=103 Identities=23% Similarity=0.337 Sum_probs=70.6
Q ss_pred CcccCCCccccccCHHH--HHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcchhhhhhhhhhhhh
Q psy8148 259 KTIWDGEETVYCFKERS--RNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQRSRNALKE 336 (390)
Q Consensus 259 ~ti~dge~t~~~Fs~~q--~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q~~q~~~Le~ 336 (390)
.||+.-+....+|++.. ...|+.|+....-..... ...+. -..+++|.|+.++..|. ..|+.
T Consensus 41 tti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~~~-----------~~~~~--~~~~~rr~Rt~ft~~Q~---~~Le~ 104 (146)
T 1au7_A 41 TTICRFENLQLSFKNACKLKAILSKWLEEAEQVGALY-----------NEKVG--ANERKRKRRTTISIAAK---DALER 104 (146)
T ss_dssp HHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC-----------------------------CCCCCCCHHHH---HHHHH
T ss_pred chHHHHhccCCChHHHHhcchHHHHHHHHhhcccCcc-----------CcccC--CCCCCCCCCcCccHHHH---HHHHH
Confidence 35555555455555443 356778877554222110 00111 12456667888888777 99999
Q ss_pred hhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccch
Q psy8148 337 CYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 377 (390)
Q Consensus 337 ~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~ 377 (390)
.|..++||+..++.+||..+||+..+|++||||||+|+|+.
T Consensus 105 ~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 105 HFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp HHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 99999999999999999999999999999999999999984
No 129
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3.9e-11 Score=96.83 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=50.1
Q ss_pred chhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhh
Q psy8148 323 QQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRA 381 (390)
Q Consensus 323 ~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~ 381 (390)
++..|+ ..|+..|..++||+..++.+||..+||+..+|++||||||+|+++.....
T Consensus 20 ~t~~Ql---~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 20 KTQGQV---KILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred CCHHHH---HHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 454555 99999999999999999999999999999999999999999998866554
No 130
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.02 E-value=2.8e-11 Score=92.63 Aligned_cols=54 Identities=37% Similarity=0.615 Sum_probs=46.3
Q ss_pred hhhhhhhhhc---CCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhcc
Q psy8148 330 SRNALKECYD---KNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAKN 383 (390)
Q Consensus 330 q~~~Le~~F~---~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~~ 383 (390)
+...|+..|. .++||+..++.+||..+||+..||++||+|+|+|.++....+++
T Consensus 9 ~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 9 ATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp HHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 4488999998 99999999999999999999999999999999999997766554
No 131
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.01 E-value=3.8e-11 Score=106.93 Aligned_cols=61 Identities=26% Similarity=0.540 Sum_probs=53.2
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccch
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 377 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~ 377 (390)
.+++|.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+.
T Consensus 99 ~~~rr~Rt~ft~~Q~---~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIR---VALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHH---HHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 366777888888777 9999999999999999999999999999999999999999999984
No 132
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.01 E-value=8.1e-11 Score=96.25 Aligned_cols=57 Identities=25% Similarity=0.420 Sum_probs=52.5
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
+....|+..|+.+|+..|..++||+..++..||..+||++.||.+||+|||+|.|..
T Consensus 36 r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 36 GLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp -CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 345679999999999999999999999999999999999999999999999988753
No 133
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=9e-11 Score=94.68 Aligned_cols=55 Identities=22% Similarity=0.394 Sum_probs=51.2
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 270 CFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 270 ~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
.|+..|+.+|+..|..++||+..++..||..+||+..||.+||+|||+|.|....
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 3789999999999999999999999999999999999999999999999876543
No 134
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=7e-11 Score=97.63 Aligned_cols=64 Identities=31% Similarity=0.468 Sum_probs=56.3
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhh---------------------CCCcccccccccccccc
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEIT---------------------GLTLTQVSNWFKNRRQR 373 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~l---------------------gLs~~qVk~WFqNRR~K 373 (390)
+.+|.|+.++..+. .+|++.|..++||+..++++||..+ ++++.+|++||||||++
T Consensus 5 ~~Rr~Rt~ft~~ql---~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 5 SSGRNRFKWGPASQ---QILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CSCCCCCCCCHHHH---HHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHH---HHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 45667788887666 9999999999999999999999999 79999999999999999
Q ss_pred ccchhhhh
Q psy8148 374 DRTPQQRA 381 (390)
Q Consensus 374 ~kk~~~r~ 381 (390)
+++.....
T Consensus 82 ~kr~~~~~ 89 (102)
T 2da6_A 82 EAFRQKLA 89 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHhhHhh
Confidence 98866443
No 135
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.00 E-value=6.5e-11 Score=97.51 Aligned_cols=62 Identities=29% Similarity=0.537 Sum_probs=51.8
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHh------------------hC---CCcccccccccccccc
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEI------------------TG---LTLTQVSNWFKNRRQR 373 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~------------------lg---Ls~~qVk~WFqNRR~K 373 (390)
+++|.|+.++..++ ..|+..|..++||+..++++||.. +| |+..+|++||||||++
T Consensus 8 k~rr~Rt~ft~~Ql---~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 8 KGRRNRFKWGPASQ---QILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -----CCCCCHHHH---HHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHH---HHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 45566778887776 999999999999999999999999 88 9999999999999999
Q ss_pred ccchhh
Q psy8148 374 DRTPQQ 379 (390)
Q Consensus 374 ~kk~~~ 379 (390)
+++...
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 987553
No 136
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.00 E-value=5.7e-11 Score=104.70 Aligned_cols=60 Identities=25% Similarity=0.438 Sum_probs=55.0
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccc
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 376 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk 376 (390)
.+++|.|+.++..+. ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+
T Consensus 91 ~~~rr~Rt~ft~~q~---~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAI---EALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHH---HHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 356667888887777 999999999999999999999999999999999999999999987
No 137
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.96 E-value=1.8e-10 Score=93.86 Aligned_cols=58 Identities=19% Similarity=0.543 Sum_probs=53.2
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------CCchhcccccccccccCCCcc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITG---------------LTLTQVSNWFKNRRQRDRTPQ 323 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tg---------------Ls~~QV~~WFqNRR~R~R~~~ 323 (390)
+....|+..|+.+|+.+|..++||+..++..||..+| |+..+|.+||+|||++.|...
T Consensus 9 r~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 9 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 3455789999999999999999999999999999999 999999999999999987643
No 138
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=98.96 E-value=1.1e-10 Score=103.50 Aligned_cols=61 Identities=26% Similarity=0.480 Sum_probs=55.6
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccch
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 377 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~ 377 (390)
.+++|.|+.++..+. ..|+..|..++||+..++.+||..+||+..+|++||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~---~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVR---WSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHH---HHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHH---HHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 466677888888777 9999999999999999999999999999999999999999999874
No 139
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.96 E-value=1.2e-10 Score=93.95 Aligned_cols=56 Identities=34% Similarity=0.456 Sum_probs=51.2
Q ss_pred cccccCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCchhcccccccccccCCCc
Q psy8148 267 TVYCFKERSRNALKECYDK---NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~---n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~ 322 (390)
....|+.+++.+|+.||.. +|||+..+|..||..|||+..||++||+|+|+|.+..
T Consensus 8 ~~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 8 HSHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 3456889999999999986 9999999999999999999999999999999988654
No 140
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.95 E-value=1.3e-10 Score=88.91 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=52.8
Q ss_pred ccccCCCcchhhhhhhhhhhhhhhcC-CCCCCHHHHHHHHHhhCCCccccccccccccccccc
Q psy8148 315 RRQRDRTPQQRSIQRSRNALKECYDK-NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 376 (390)
Q Consensus 315 RR~R~R~~~t~~q~~q~~~Le~~F~~-n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk 376 (390)
..+|.|+.++..|+ ..|+..|+. ++||+.+++..||..+||++.+|++||||+|.-.+-
T Consensus 6 ~~kR~RT~~s~eQL---~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 6 SGPRSRTKISLEAL---GILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCSHHH---HHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCccCCHHHH---HHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 45667788887777 999999999 999999999999999999999999999999986554
No 141
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.94 E-value=4.5e-10 Score=85.83 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=49.4
Q ss_pred ccccccCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCchhcccccccccccC
Q psy8148 266 ETVYCFKERSRNALKECYDK-NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRD 319 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~-n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~ 319 (390)
+.+..|+.+|+.+|+..|.. ++||+...+..||..|||++.+|.+||||+|---
T Consensus 9 R~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 9 RSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 34457999999999999999 9999999999999999999999999999998543
No 142
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.92 E-value=1.8e-10 Score=102.67 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=53.0
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccccccchhhh
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r 380 (390)
.+.+|.|+.++..|. ..|+..|..++||+..++.+||..+||+..+|++||||||+|.|+....
T Consensus 95 ~~~rr~Rt~ft~~q~---~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQR---RTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp -----CCCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCcCCHHHH---HHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 345667788887777 9999999999999999999999999999999999999999999985543
No 143
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.91 E-value=5.7e-10 Score=99.41 Aligned_cols=59 Identities=27% Similarity=0.455 Sum_probs=53.3
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCCCcch
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t 324 (390)
+.+..|+..|+.+|+.+|..++||+..++..||..+||++.||++||+|||+|.|....
T Consensus 99 r~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 99 KPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 45567999999999999999999999999999999999999999999999999987644
No 144
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.89 E-value=6.5e-10 Score=91.53 Aligned_cols=58 Identities=28% Similarity=0.554 Sum_probs=52.1
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHH------------------hC---CCchhcccccccccccCCCcch
Q psy8148 267 TVYCFKERSRNALKECYDKNRYPNPDEKRQLSEI------------------TG---LTLTQVSNWFKNRRQRDRTPQQ 324 (390)
Q Consensus 267 t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~------------------tg---Ls~~QV~~WFqNRR~R~R~~~t 324 (390)
..+.|+..|+.+|+..|..++||+..++.+||.. +| |++.+|.+||+|||++.+....
T Consensus 12 ~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k~~ 90 (99)
T 1lfb_A 12 NRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRHK 90 (99)
T ss_dssp -CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC-
T ss_pred CCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHhch
Confidence 4457899999999999999999999999999999 88 9999999999999998876543
No 145
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1e-09 Score=90.71 Aligned_cols=57 Identities=28% Similarity=0.508 Sum_probs=51.8
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh---------------------CCCchhcccccccccccCCCc
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEIT---------------------GLTLTQVSNWFKNRRQRDRTP 322 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~t---------------------gLs~~QV~~WFqNRR~R~R~~ 322 (390)
+.++.|+..|+.+|+..|..++||+..++++||..+ ++++.+|.+||+|||++.+..
T Consensus 8 r~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr~ 85 (102)
T 2da6_A 8 RNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAFR 85 (102)
T ss_dssp CCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHHh
Confidence 344568899999999999999999999999999999 799999999999999988654
No 146
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.84 E-value=3.8e-10 Score=91.04 Aligned_cols=54 Identities=37% Similarity=0.497 Sum_probs=47.8
Q ss_pred hhhhhhhhhcC---CCCCCHHHHHHHHHhhCCCccccccccccccccccchhhhhcc
Q psy8148 330 SRNALKECYDK---NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAKN 383 (390)
Q Consensus 330 q~~~Le~~F~~---n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~kk~~~r~~~ 383 (390)
+...|+.+|.. ++||+.+++.+||..+||+..||++||+|+|.|.++...+...
T Consensus 16 ~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~~ 72 (89)
T 2lk2_A 16 SVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDG 72 (89)
T ss_dssp HHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhcC
Confidence 34788888865 9999999999999999999999999999999999987766653
No 147
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=2.6e-09 Score=82.09 Aligned_cols=44 Identities=34% Similarity=0.528 Sum_probs=42.0
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccccccc
Q psy8148 329 RSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQ 372 (390)
Q Consensus 329 ~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~ 372 (390)
.|+..|+.+|..+++|+.+++..||..+||+.+.|++||+|||+
T Consensus 15 ~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 15 DHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 45699999999999999999999999999999999999999997
No 148
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.71 E-value=1.1e-09 Score=100.36 Aligned_cols=61 Identities=28% Similarity=0.512 Sum_probs=51.7
Q ss_pred ccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhC---------------------CCcccccccccccc
Q psy8148 313 KNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITG---------------------LTLTQVSNWFKNRR 371 (390)
Q Consensus 313 qNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lg---------------------Ls~~qVk~WFqNRR 371 (390)
..+++|.|+.++..+. ..|++.|..++||+..++++||..++ ++..+|++||+|||
T Consensus 112 ~~k~rr~R~~ft~~ql---~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR 188 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQ---QILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 188 (194)
T ss_dssp -----CCCCCCCHHHH---HHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHH
T ss_pred cccCCCCCcccCHHHH---HHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhh
Confidence 3456677888887777 99999999999999999999999999 99999999999999
Q ss_pred ccccc
Q psy8148 372 QRDRT 376 (390)
Q Consensus 372 ~K~kk 376 (390)
++++.
T Consensus 189 ~~~k~ 193 (194)
T 1ic8_A 189 KEEAF 193 (194)
T ss_dssp HHCC-
T ss_pred hhhhc
Confidence 99875
No 149
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=8.1e-09 Score=79.32 Aligned_cols=47 Identities=32% Similarity=0.497 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccC
Q psy8148 273 ERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRD 319 (390)
Q Consensus 273 ~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~ 319 (390)
.+++.+|+.+|..|++|+.+++..||..+||+.+.|++||+|+|.+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 45799999999999999999999999999999999999999999754
No 150
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.52 E-value=1.6e-08 Score=92.74 Aligned_cols=56 Identities=27% Similarity=0.533 Sum_probs=51.3
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCchhcccccccccccCCC
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITG---------------------LTLTQVSNWFKNRRQRDRT 321 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tg---------------------Ls~~QV~~WFqNRR~R~R~ 321 (390)
+.++.|+..|+.+|+..|..++||+..+|.+||..++ ||..+|.+||+|||++.+.
T Consensus 117 r~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 117 RNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 4456789999999999999999999999999999999 9999999999999998763
No 151
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.52 E-value=4.1e-08 Score=97.38 Aligned_cols=51 Identities=27% Similarity=0.541 Sum_probs=48.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccCC
Q psy8148 270 CFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320 (390)
Q Consensus 270 ~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~R 320 (390)
.|+..++..|+..|..++||+..+|.+||..+||+.+||++||+|||+|.|
T Consensus 371 ~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 371 AISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp SSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 477899999999999999999999999999999999999999999999976
No 152
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.48 E-value=5.9e-08 Score=90.33 Aligned_cols=55 Identities=29% Similarity=0.575 Sum_probs=50.0
Q ss_pred ccccccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCchhcccccccccccCC
Q psy8148 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITG---------------------LTLTQVSNWFKNRRQRDR 320 (390)
Q Consensus 266 ~t~~~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tg---------------------Ls~~QV~~WFqNRR~R~R 320 (390)
+.++.|+..|+.+|+.+|..++||+..+|++||..+| ||..+|.+||+|||+...
T Consensus 144 R~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~~ 219 (221)
T 2h8r_A 144 RNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 219 (221)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTCC
T ss_pred CCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhhh
Confidence 4455789999999999999999999999999999987 899999999999998753
No 153
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.46 E-value=2.8e-08 Score=92.50 Aligned_cols=59 Identities=31% Similarity=0.554 Sum_probs=51.1
Q ss_pred cccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhC---------------------CCccccccccccccc
Q psy8148 314 NRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITG---------------------LTLTQVSNWFKNRRQ 372 (390)
Q Consensus 314 NRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lg---------------------Ls~~qVk~WFqNRR~ 372 (390)
.+++|.|+.++..+. ..|+..|..++||+..++++||..++ |+..+|++||+|||+
T Consensus 140 ~k~RR~R~~ft~~ql---~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 140 KKMRRNRFKWGPASQ---QILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp --CCCCCCCCCHHHH---HHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCCHHHH---HHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 345667788887777 99999999999999999999999887 889999999999999
Q ss_pred ccc
Q psy8148 373 RDR 375 (390)
Q Consensus 373 K~k 375 (390)
+..
T Consensus 217 ~~~ 219 (221)
T 2h8r_A 217 EEA 219 (221)
T ss_dssp TCC
T ss_pred hhh
Confidence 764
No 154
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.43 E-value=2.5e-08 Score=98.89 Aligned_cols=47 Identities=30% Similarity=0.579 Sum_probs=44.4
Q ss_pred hhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCcccccccccccccccc
Q psy8148 329 RSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 375 (390)
Q Consensus 329 ~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFqNRR~K~k 375 (390)
.++..|++.|..++||+..++.+||..+||+.+||++||||||+|+|
T Consensus 375 ~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 375 QARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34589999999999999999999999999999999999999999986
No 155
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.82 E-value=3.5e-06 Score=56.90 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.3
Q ss_pred cccccccccccccccchhhhh
Q psy8148 361 TQVSNWFKNRRQRDRTPQQRA 381 (390)
Q Consensus 361 ~qVk~WFqNRR~K~kk~~~r~ 381 (390)
+||++||||||+|+|+.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999977654
No 156
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=96.14 E-value=0.00068 Score=45.66 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=17.4
Q ss_pred hhcccccccccccCCCcchh
Q psy8148 306 TQVSNWFKNRRQRDRTPQQR 325 (390)
Q Consensus 306 ~QV~~WFqNRR~R~R~~~t~ 325 (390)
.||.+||+|||.|.|+....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 48999999999999987664
No 157
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.85 E-value=0.17 Score=38.54 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccc
Q psy8148 276 RNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNR 315 (390)
Q Consensus 276 ~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNR 315 (390)
+++|+.+|..........-..|+.+++|+..||+.||..|
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999654
No 158
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.18 E-value=0.28 Score=37.38 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=35.2
Q ss_pred hhhhhhhcCCCCCCHHHHHHHHHhhCCCccccccccc
Q psy8148 332 NALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFK 368 (390)
Q Consensus 332 ~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WFq 368 (390)
..|++.|...+....++...|+.+++|+..||+-||-
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 6789999999999999999999999999999999995
No 159
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.34 E-value=5.7 Score=29.42 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHhh-cCChhHHHHHHHcCC
Q psy8148 126 HYLEIQQKAQEYLNMKKLNPNMSFTPEQIDCLCEAMQQ-SGDFDKLAMFLWSLP 178 (390)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~c~~l~~-~~~~~~l~~fl~~lp 178 (390)
-|.|++..+-+..+.....-+|.||.+|... +|.. .||+||-+.+|-+=|
T Consensus 8 ~~~~l~~ls~se~e~V~~LvsMGFs~~qA~k---ALKat~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 8 AYSELQMLSPSERQCVETVVNMGYSYECVLR---AMKKKGENIEQILDYLFAHS 58 (63)
T ss_dssp STHHHHTCCHHHHHHHHHHHHHHCCHHHHHH---HHHHHCSCHHHHHHHHHHHS
T ss_pred chHHHHhhCcchHHHHHHHHHcCCCHHHHHH---HHHHcCCCHHHHHHHHHhCC
Confidence 4777765555555555555678999999764 4554 888999999987654
No 160
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=39.24 E-value=25 Score=25.72 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCchhcccccccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCcccccccc
Q psy8148 294 KRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWF 367 (390)
Q Consensus 294 k~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qVk~WF 367 (390)
..++|..+|++...|+.|-.+++ .|+......|+..+|++...+.-|+
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~--------------------------~~~~~~~~~ia~~l~v~~~~l~~~l 75 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGIN--------------------------ALNAYNAALLAKILKVSVEEFSPSI 75 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS--------------------------CCCHHHHHHHHHHHTSCGGGTCHHH
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC--------------------------CCCHHHHHHHHHHhCCCHHHHhHHH
Confidence 35789999999999998875432 2445566677777777776655543
No 161
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=32.94 E-value=43 Score=30.40 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=40.7
Q ss_pred hhcCChhhHHHHHhcCCCcccccCCchHHHHHHHH-HhhcCChHHHHHHHhcCC
Q psy8148 23 QQSGDFDKLAMFLWSLPPQEAIRGQESVLRARAVV-AYKRHAFHELYAILESHN 75 (390)
Q Consensus 23 ~~~~~~~~l~~f~~slp~~~~~~~~e~~l~a~a~v-~~~~~~~~ely~~l~~~~ 75 (390)
+-.|++.-+..+|..||+.+.+.++..|--|-++. |+..|||...++++++.+
T Consensus 108 L~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p 161 (229)
T 4b0z_A 108 LSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCN 161 (229)
T ss_dssp HHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCc
Confidence 45688888888999999876666666665565554 678999999999998754
No 162
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=31.24 E-value=42 Score=26.09 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=26.1
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhccccccc
Q psy8148 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKN 314 (390)
Q Consensus 271 Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqN 314 (390)
++.+.+..+...+. ..+ ...++|..+|++...|..|.+.
T Consensus 18 ~s~~~r~~i~~~~~-~g~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 18 LPNNIRLKIVEMAA-DGI----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCHHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 44555544444444 333 2456899999999999999875
No 163
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=30.59 E-value=54 Score=23.20 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=31.2
Q ss_pred HHHHHHHhCCCchhcccccccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCccc
Q psy8148 294 KRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQ 362 (390)
Q Consensus 294 k~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~q 362 (390)
..+||..+|++...|+.|..++ ..|+.+....|+..+|++...
T Consensus 24 q~~lA~~~gis~~~is~~e~g~--------------------------~~~~~~~l~~ia~~l~v~~~~ 66 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND--------------------------VQPSLETLFDIAEALNVDVRE 66 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS--------------------------SCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHCcCHHHHHHHHcCC--------------------------CCCCHHHHHHHHHHHCcCHHH
Confidence 4578999999999998887542 125566677788888877644
No 164
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=29.95 E-value=51 Score=25.26 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCchhcccccccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCcccc
Q psy8148 294 KRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQV 363 (390)
Q Consensus 294 k~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~qV 363 (390)
..+||..+|++...|+.|-.++ .|+.+....||..++++...+
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~---------------------------~~s~~~l~kIa~~L~v~~~~L 82 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNE---------------------------NVSLTVLLAICEYLNCDFGDI 82 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC---------------------------CCCHHHHHHHHHHHTCCGGGT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC---------------------------CcCHHHHHHHHHHHCcCHHHH
Confidence 4679999999999998886542 134456667778888776554
No 165
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=27.25 E-value=72 Score=22.41 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCchhcccccccccccCCCcchhhhhhhhhhhhhhhcCCCCCCHHHHHHHHHhhCCCcc
Q psy8148 294 KRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLT 361 (390)
Q Consensus 294 k~~LA~~tgLs~~QV~~WFqNRR~R~R~~~t~~q~~q~~~Le~~F~~n~yPs~~er~eLA~~lgLs~~ 361 (390)
..+||..+|++...|..|..+++ .|+......|+..+|++..
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~--------------------------~~~~~~l~~ia~~l~~~~~ 67 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS--------------------------QPSLDMLVKVAELLNVDPR 67 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS--------------------------CCCHHHHHHHHHHHTSCGG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC--------------------------CCCHHHHHHHHHHHCcCHH
Confidence 46789999999999988875432 2445556667777777653
No 166
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=24.10 E-value=49 Score=27.55 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=49.8
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccC------CCc--chhhhhhhhhhhhhhhcCCC
Q psy8148 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRD------RTP--QQRSIQRSRNALKECYDKNR 342 (390)
Q Consensus 271 Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~------R~~--~t~~q~~q~~~Le~~F~~n~ 342 (390)
++.+.+..+...+... . ...++|..+|++...|..|.+..+... +.. ......+....+......++
T Consensus 26 ~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~ 100 (159)
T 2k27_A 26 LPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNP 100 (159)
T ss_dssp SCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCc
Confidence 4455554444444432 2 345689999999999999987543211 000 00011111234444444444
Q ss_pred CCCHHHHHH-HHHh------hCCCcccccccccccc
Q psy8148 343 YPNPDEKRQ-LSEI------TGLTLTQVSNWFKNRR 371 (390)
Q Consensus 343 yPs~~er~e-LA~~------lgLs~~qVk~WFqNRR 371 (390)
..+..+... |... ..++.+.|..|....+
T Consensus 101 ~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~ 136 (159)
T 2k27_A 101 TMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKV 136 (159)
T ss_dssp SSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHh
Confidence 444444332 3222 2478888998886433
No 167
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=23.71 E-value=50 Score=22.91 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=26.8
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccc
Q psy8148 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFK 313 (390)
Q Consensus 271 Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFq 313 (390)
|+.+.+......+.. ..+......++|..+|++..+|..|.+
T Consensus 6 ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 6 FTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 445554444444433 233222356899999999999999975
No 168
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=23.31 E-value=33 Score=27.51 Aligned_cols=89 Identities=10% Similarity=0.066 Sum_probs=48.9
Q ss_pred cCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhcccccccccccC------CCc-chhhhhhhhhhhhhhhcCCCC
Q psy8148 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRD------RTP-QQRSIQRSRNALKECYDKNRY 343 (390)
Q Consensus 271 Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqNRR~R~------R~~-~t~~q~~q~~~Le~~F~~n~y 343 (390)
++.+.+..+...+.. .. ...++|..+|++...|..|++..+... +.. .+..+. ..+... ..++.
T Consensus 7 ~s~~~r~~i~~~~~~-G~----s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~---~~i~~~-~~~~~ 77 (141)
T 1u78_A 7 LSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDE---RNVIRA-ASNSC 77 (141)
T ss_dssp CCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHH---HHHHHH-HHHCC
T ss_pred CCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHH---HHHHHH-HhCCC
Confidence 445555555555532 22 346789999999999999987543211 111 111111 222222 22333
Q ss_pred CCHHHHHHHHHhhC--CCcccccccccccc
Q psy8148 344 PNPDEKRQLSEITG--LTLTQVSNWFKNRR 371 (390)
Q Consensus 344 Ps~~er~eLA~~lg--Ls~~qVk~WFqNRR 371 (390)
.+. .+|+..+| ++...|..|+....
T Consensus 78 ~s~---~~i~~~lg~~~s~~tV~r~l~~~g 104 (141)
T 1u78_A 78 KTA---RDIRNELQLSASKRTILNVIKRSG 104 (141)
T ss_dssp CCH---HHHHHHTTCCSCHHHHHHHHHHTC
T ss_pred CCH---HHHHHHHCCCccHHHHHHHHHHCC
Confidence 333 34666667 78888988886433
No 169
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=22.98 E-value=86 Score=21.76 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCchhccccccc
Q psy8148 294 KRQLSEITGLTLTQVSNWFKN 314 (390)
Q Consensus 294 k~~LA~~tgLs~~QV~~WFqN 314 (390)
..++|..+|++...|+.|-.+
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHCC
Confidence 467899999999999888654
No 170
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=20.31 E-value=1.4e+02 Score=26.78 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=42.0
Q ss_pred hhcCChhHHHHHHHcCCCccccccchhhhhhHHHH-HHhhhcHHHHHHHHhcCC
Q psy8148 162 QQSGDFDKLAMFLWSLPPQEAIRGQESVLRARAVV-AYKRHAFHELYAILESHN 214 (390)
Q Consensus 162 ~~~~~~~~l~~fl~~lp~~~~~~~~e~v~rAra~v-~~h~~~f~el~~~L~~~~ 214 (390)
.-.|++..+-.+|..+|+.+.+.+|..|--|-.+. ++..|+|...|+++.+.+
T Consensus 108 L~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p 161 (229)
T 4b0z_A 108 LSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCN 161 (229)
T ss_dssp HHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCc
Confidence 34789999999999999887777777665554443 577899999999998765
No 171
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=20.24 E-value=26 Score=23.48 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=18.8
Q ss_pred CCCCccccCCCCee--eecccccch
Q psy8148 102 RDLGYSSDDSSPVL--YETNAHDFN 124 (390)
Q Consensus 102 r~lg~~~~~~~~~~--~~~~~~~~~ 124 (390)
||+||.-+|.++-+ +|++.||..
T Consensus 11 kP~GA~Crd~~EC~T~lCR~~~cs~ 35 (40)
T 2l1q_A 11 RPIGASCRDDSECITRLCRKRRCSL 35 (40)
T ss_dssp BCTTSBCSSGGGBTTSCEETTEECS
T ss_pred CccchhhccchhhhhHHhcCCCccc
Confidence 89999999999984 478888754
No 172
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.22 E-value=63 Score=26.40 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=27.2
Q ss_pred ccCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCchhccccccc
Q psy8148 270 CFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKN 314 (390)
Q Consensus 270 ~Fs~~q~~~Le~~F~~n~YPs~~ek~~LA~~tgLs~~QV~~WFqN 314 (390)
.++.+.+......+. ... ...++|..+|++...|..|.+.
T Consensus 32 ~~s~e~r~~iv~~~~-~G~----s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 32 PLPDVVRQRIVELAH-QGV----RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp CCCHHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 355666555545554 332 2456899999999999999864
Done!