RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8148
(390 letters)
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 52.8 bits (127), Expect = 5e-10
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 271 FKERSRNALKECYD---KNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 318
+ + N ++ + YP DEK+Q++ T LTL QV+NWF N R+R
Sbjct: 9 LPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 59
Score = 52.0 bits (125), Expect = 8e-10
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 314 NRRQRDRTPQQRSIQRSRNALKECYD---KNRYPNPDEKRQLSEITGLTLTQVSNWFKNR 370
+ +R P+ + N ++ + YP DEK+Q++ T LTL QV+NWF N
Sbjct: 2 GKNKRGVLPKH-----ATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINA 56
Query: 371 RQR 373
R+R
Sbjct: 57 RRR 59
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 52.1 bits (125), Expect = 8e-10
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 271 FKERSRNALKECYDKNR---YPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 321
F + + L+ + KN Y + L + T L+ Q+ NW NRR++++T
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
Score = 50.2 bits (120), Expect = 4e-09
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 328 QRSRNALKECYDKNR---YPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRT 376
+ + L+ + KN Y + L + T L+ Q+ NW NRR++++T
Sbjct: 7 KENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 51.3 bits (123), Expect = 2e-09
Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 270 CFKERSRNALKECYDK-NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320
K + L++ + +YP+ + LS+ ++ ++ WF++RR +D+
Sbjct: 7 VNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
Score = 47.5 bits (113), Expect = 4e-08
Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 315 RRQRDRTPQQRSIQRSRNALKECYDK-NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 373
+ + L++ + +YP+ + LS+ ++ ++ WF++RR +
Sbjct: 3 KDSPVNKVEPNDT------LEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQ 56
Query: 374 DR 375
D+
Sbjct: 57 DK 58
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 50.7 bits (121), Expect = 4e-09
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 315 RRQRDR-TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 373
RR+R Q I + N YP+ + K +L++ G+T++QVSNWF N+R R
Sbjct: 2 RRKRRNFNKQATEILN---EYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58
Query: 374 DRTPQQRAKNR 384
+ + +
Sbjct: 59 YKKNIGKFQEE 69
Score = 49.6 bits (118), Expect = 1e-08
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 271 FKERSRNALKECYD---KNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSI 327
F +++ L E + N YP+ + K +L++ G+T++QVSNWF N+R R + +
Sbjct: 8 FNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67
Query: 328 QRS 330
+ +
Sbjct: 68 EEA 70
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 49.9 bits (119), Expect = 4e-09
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320
++R L++ + + + N EK ++++ G+T QV WF N+R R +
Sbjct: 4 ISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
Score = 49.5 bits (118), Expect = 7e-09
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 321 TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 375
+PQ R+ L++ + + + N EK ++++ G+T QV WF N+R R +
Sbjct: 5 SPQARAF------LEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 50.0 bits (119), Expect = 7e-09
Identities = 8/63 (12%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Query: 313 KNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQ 372
R + T +Q ++ + + + + Q TG+ + W N +
Sbjct: 17 TKRFRTKFTAEQ--KEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKN 74
Query: 373 RDR 375
Sbjct: 75 SGP 77
Score = 48.1 bits (114), Expect = 4e-08
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 272 KERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320
KE+ + + + + Q TG+ + W N +
Sbjct: 29 KEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 49.4 bits (118), Expect = 8e-09
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQR 329
F + AL++ +++ YP+ + +L+ L ++ WF NRR + R ++ QR
Sbjct: 8 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQR 66
Score = 49.4 bits (118), Expect = 8e-09
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 315 RRQRDR-TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 373
+R R T +Q L++ +++ YP+ + +L+ L ++ WF NRR +
Sbjct: 2 QRNRTSFTQEQIEA------LEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAK 55
Query: 374 DRTPQQRAKNR 384
R ++ R
Sbjct: 56 WRREEKLRNQR 66
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 49.5 bits (118), Expect = 1e-08
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQ 328
E+ + L+ CY N P+ K QL E+TGL+ + WF+N+R +D+ + ++
Sbjct: 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK-RSIMMK 66
Score = 49.1 bits (117), Expect = 1e-08
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 313 KNRRQRDR-TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRR 371
K R R +Q L+ CY N P+ K QL E+TGL+ + WF+N+R
Sbjct: 2 KTTRVRTVLNEKQLHT------LRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKR 55
Query: 372 QRDR 375
+D+
Sbjct: 56 CKDK 59
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 48.9 bits (117), Expect = 1e-08
Identities = 11/56 (19%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 321 TPQQRSIQRSRNALKECYDK-NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 375
T Q +I L++ + ++P+ LS+ + + WF+ RR +++
Sbjct: 1 TAQPNAI------LEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 50
Score = 47.0 bits (112), Expect = 5e-08
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 286 NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320
++P+ LS+ + + WF+ RR +++
Sbjct: 16 TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 50
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 48.7 bits (116), Expect = 1e-08
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRR 316
F + R L + +N+ P+ + + +S+ GL L+ VSN+F N R
Sbjct: 5 FTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
Score = 46.4 bits (110), Expect = 6e-08
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 331 RNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRR 371
R L + +N+ P+ + + +S+ GL L+ VSN+F N R
Sbjct: 10 RRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 48.3 bits (115), Expect = 3e-08
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 309 SNWFKNRRQRDR----TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVS 364
+NW R R + T Q L++ + N Y D + +++ + LT QV
Sbjct: 5 ANWLHARSTRKKRCPYTKHQT------LELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58
Query: 365 NWFKNRRQRDRTPQQRAKNR 384
WF+NRR + + + + +
Sbjct: 59 IWFQNRRMKMKK-INKDRAK 77
Score = 46.4 bits (110), Expect = 1e-07
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324
+ + L++ + N Y D + +++ + LT QV WF+NRR + + +
Sbjct: 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 48.0 bits (114), Expect = 3e-08
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 313 KNRRQRDR-TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRR 371
K RR R + Q L+ +++ +YP+ + +L++ T LT ++ WF+NRR
Sbjct: 1 KQRRSRTTFSASQLDE------LERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRR 54
Query: 372 QRDRTPQQ 379
R R
Sbjct: 55 ARLRKQHT 62
Score = 46.4 bits (110), Expect = 1e-07
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324
F + L+ +++ +YP+ + +L++ T LT ++ WF+NRR R R
Sbjct: 9 FSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 62
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 47.7 bits (113), Expect = 6e-08
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 309 SNWFKNRRQRDR-TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWF 367
R T +Q L++ + N+Y + + +++ L TQV WF
Sbjct: 22 PGLGSPSGLRTNFTTRQL------TELEKEFHFNKYLSRARRVEIAATLELNETQVKIWF 75
Query: 368 KNRRQRDRTPQQ 379
+NRR + + ++
Sbjct: 76 QNRRMKQKKRER 87
Score = 45.8 bits (108), Expect = 3e-07
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQ 324
F R L++ + N+Y + + +++ L TQV WF+NRR + + ++
Sbjct: 34 FTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 87
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 46.0 bits (109), Expect = 1e-07
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320
F L++ ++ +Y +P E+++L+++ L+ QV WF+NRR + R
Sbjct: 7 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWR 56
Score = 46.0 bits (109), Expect = 1e-07
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 315 RRQRDR-TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 373
+ + R + Q L++ ++ +Y +P E+++L+++ L+ QV WF+NRR +
Sbjct: 1 KGGQVRFSNDQTIE------LEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 54
Query: 374 DR 375
R
Sbjct: 55 WR 56
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 46.6 bits (110), Expect = 1e-07
Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 312 FKNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRR 371
F ++ +++T +Q + L+ + + +E +L T LT ++ WF ++
Sbjct: 3 FTPQKFKEKTAEQLRV------LQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKK 56
Query: 372 QRDRTPQQRAKN 383
+ +++ +
Sbjct: 57 KSKALKEEKMEI 68
Score = 42.0 bits (98), Expect = 4e-06
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 271 FKERSRN---ALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSI 327
FKE++ L+ + + +E +L T LT ++ WF +++ +++
Sbjct: 8 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 67
Query: 328 QRSRNA 333
NA
Sbjct: 68 IDESNA 73
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 45.5 bits (108), Expect = 1e-07
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320
+ L++ + NRY + +++ LT Q+ WF+NRR + +
Sbjct: 4 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWK 53
Score = 45.2 bits (107), Expect = 2e-07
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 332 NALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 375
L++ + NRY + +++ LT Q+ WF+NRR + +
Sbjct: 10 LELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWK 53
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 45.2 bits (107), Expect = 2e-07
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 318
F LK +++NRY ++QLS GL Q+ WF+N R +
Sbjct: 6 FSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
Score = 44.1 bits (104), Expect = 5e-07
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 331 RNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 373
LK +++NRY ++QLS GL Q+ WF+N R +
Sbjct: 11 LARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 44.9 bits (106), Expect = 4e-07
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQR 329
F + L+ + + +Y + E+ L+ + LT TQV WF+N R + + + +
Sbjct: 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQ 67
Score = 43.0 bits (101), Expect = 2e-06
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 331 RNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQR 380
L+ + + +Y + E+ L+ + LT TQV WF+N R + + +
Sbjct: 14 VYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 43.3 bits (102), Expect = 1e-06
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 315 RRQRDR-TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 373
R++R + Q L+ Y N++ D++R++S T L+ Q++ WF+NRR +
Sbjct: 2 RKKRIPYSKGQLRE------LEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVK 55
Query: 374 DR 375
++
Sbjct: 56 EK 57
Score = 43.3 bits (102), Expect = 1e-06
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320
+ + L+ Y N++ D++R++S T L+ Q++ WF+NRR +++
Sbjct: 8 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEK 57
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 43.4 bits (102), Expect = 1e-06
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 315 RRQRDR-TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 373
RRQR T QQ L+ + +NRYP+ + +++ T LT +V WFKNRR +
Sbjct: 2 RRQRTHFTSQQLQQ------LEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAK 55
Query: 374 DRTPQ 378
R +
Sbjct: 56 WRKRE 60
Score = 43.4 bits (102), Expect = 1e-06
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQ 323
F + L+ + +NRYP+ + +++ T LT +V WFKNRR + R +
Sbjct: 8 FTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 60
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 43.4 bits (102), Expect = 1e-06
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 315 RRQRDR-TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 373
RR R T Q L++ + + RY LS L QV WFKNRR+R
Sbjct: 2 RRTRTTFTSSQI------AELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRR 55
Query: 374 DRTPQQRAKNRT 385
+ + K+++
Sbjct: 56 HKIQSDQHKDQS 67
Score = 42.6 bits (100), Expect = 2e-06
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQRS 330
F L++ + + RY LS L QV WFKNRR+R + + +S
Sbjct: 8 FTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHKDQS 67
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 43.0 bits (101), Expect = 2e-06
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320
F L++ + K Y + + +L+ L + + WF+NRR +D+
Sbjct: 6 FTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDK 55
Score = 41.8 bits (98), Expect = 3e-06
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 331 RNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 375
L++ + K Y + + +L+ L + + WF+NRR +D+
Sbjct: 11 LGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDK 55
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 42.6 bits (100), Expect = 2e-06
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320
+++AL+ + ++ P+ E +++E L V WF NRRQR++
Sbjct: 6 ISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREK 55
Score = 41.8 bits (98), Expect = 4e-06
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 331 RNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 375
++AL+ + ++ P+ E +++E L V WF NRRQR++
Sbjct: 11 KDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREK 55
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 41.4 bits (97), Expect = 4e-06
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 315 RRQRDR-TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 373
R+ R T Q L+ + + +Y + E+ + S LT TQV WF+NRR +
Sbjct: 1 RKPRTPFTTAQLLA------LERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAK 54
Query: 374 DR 375
+
Sbjct: 55 AK 56
Score = 41.4 bits (97), Expect = 5e-06
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320
F AL+ + + +Y + E+ + S LT TQV WF+NRR + +
Sbjct: 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 41.5 bits (97), Expect = 5e-06
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320
+ R AL++ + +N+ P ++ ++E + + WF NRRQ+++
Sbjct: 5 IETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 54
Score = 40.3 bits (94), Expect = 1e-05
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 331 RNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 375
R AL++ + +N+ P ++ ++E + + WF NRRQ+++
Sbjct: 10 RVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 54
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 41.6 bits (97), Expect = 7e-06
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 313 KNRRQRDR-TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRR 371
K R++R T Q L+ + + RY + E+ L+ + LT TQV WF+N R
Sbjct: 8 KKRKRRVLFTKAQT------YELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 61
Query: 372 QRDRTPQQR 380
+ + Q
Sbjct: 62 YKTKRAQNE 70
Score = 40.8 bits (95), Expect = 2e-05
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRS 326
F + L+ + + RY + E+ L+ + LT TQV WF+N R + + Q
Sbjct: 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 41.2 bits (96), Expect = 1e-05
Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 22/84 (26%)
Query: 315 RRQRDR-TPQQRSIQRSRNALKECYDKNRYPNPDEKRQL---------------SEITGL 358
R R + ++ ++ +++N+YP+ ++ ++ S++ +
Sbjct: 1 RGSRFTWRKECLAV------MESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERV 54
Query: 359 TLTQVSNWFKNRRQRDRTPQQRAK 382
T +V NWF NRR+ + A
Sbjct: 55 TSLKVYNWFANRRKEIKRRANIAA 78
Score = 41.2 bits (96), Expect = 1e-05
Identities = 12/67 (17%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 269 YCFKERSRNALKECYDKNRYPNPDEKRQL---------------SEITGLTLTQVSNWFK 313
+ +++ ++ +++N+YP+ ++ ++ S++ +T +V NWF
Sbjct: 5 FTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFA 64
Query: 314 NRRQRDR 320
NRR+ +
Sbjct: 65 NRRKEIK 71
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 40.8 bits (95), Expect = 1e-05
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 272 KERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRS 326
E +D YP+ + LS L + +F+N+R + S
Sbjct: 16 LEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPSS 70
Score = 40.5 bits (94), Expect = 2e-05
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 313 KNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQ 372
R R + S++ +D YP+ + LS L + +F+N+R
Sbjct: 6 SGPRSRTKI----SLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61
Query: 373 RDR 375
+
Sbjct: 62 HVK 64
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 40.9 bits (95), Expect = 1e-05
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 21/75 (28%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEIT---------------------GLTLTQVS 309
+ S+ L + Y++ + P+ +E+ L E +T +V
Sbjct: 4 WGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 63
Query: 310 NWFKNRRQRDRTPQQ 324
NWF NRR+ + +
Sbjct: 64 NWFANRRKEEAFRHK 78
Score = 40.1 bits (93), Expect = 3e-05
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 27/80 (33%)
Query: 321 TPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEIT---------------------GLT 359
P + I L + Y++ + P+ +E+ L E +T
Sbjct: 5 GPASQQI------LFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVT 58
Query: 360 LTQVSNWFKNRRQRDRTPQQ 379
+V NWF NRR+ + +
Sbjct: 59 EVRVYNWFANRRKEEAFRHK 78
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 38.8 bits (90), Expect = 5e-05
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDR 320
+ R R +L+ + K P+ + ++ GL V WF NRRQ+ +
Sbjct: 15 IENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGK 64
Score = 38.4 bits (89), Expect = 7e-05
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 312 FKNRRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRR 371
R+R RT + + R +L+ + K P+ + ++ GL V WF NRR
Sbjct: 4 LVQARKRKRTSIENRV---RWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRR 60
Query: 372 QRDR 375
Q+ +
Sbjct: 61 QKGK 64
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 38.2 bits (88), Expect = 1e-04
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 315 RRQRDRTPQQRSIQRSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRD 374
+ +T +Q +I LK + + ++ ++ ++L +ITGL ++ WF + R
Sbjct: 5 SSGKRKTKEQLAI------LKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYAL 58
Query: 375 RTPQQRAKNRT 385
+ Q +
Sbjct: 59 KHGQLKWFRDN 69
Score = 37.0 bits (85), Expect = 3e-04
Identities = 11/62 (17%), Positives = 29/62 (46%)
Query: 271 FKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRSIQRS 330
+ LK + + ++ ++ ++L +ITGL ++ WF + R + Q + + +
Sbjct: 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFRDN 69
Query: 331 RN 332
+
Sbjct: 70 AS 71
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 37.3 bits (86), Expect = 2e-04
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 264 GEETVYCFKERSRNALKECYDK-NRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTP 322
G E E L+ ++K N++P+P ++ GLT Q WFK R R
Sbjct: 1 GSEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60
Query: 323 QQRSIQRS 330
+ +
Sbjct: 61 EGLPSECR 68
Score = 37.3 bits (86), Expect = 2e-04
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 335 KECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQRDRTPQQRAKNR 384
N++P+P ++ GLT Q WFK R R +
Sbjct: 18 YNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGLPSEC 67
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
chain {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 670
Score = 31.5 bits (70), Expect = 0.17
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 232 YKEHAKIRGRDLGAVDKYRIRKKFPLPKTIWDGEETVYCFKERSRNALKECYDKNRYPNP 291
Y + G DL D Y + L + +GEET + ++E +K Y P
Sbjct: 596 YAAFGRGHGHDLAPFDTYH--EVRGLHWPVVEGEETRWRYREGFDPYVKPGEGLRFYGKP 653
Query: 292 DEKRQL 297
D + +
Sbjct: 654 DGRAVI 659
>d2oqza1 b.100.1.1 (A:35-253) Hypothetical protein BA4783 {Bacillus
anthracis [TaxId: 1392]}
Length = 219
Score = 30.3 bits (68), Expect = 0.33
Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 4/113 (3%)
Query: 207 YAILESHNF-DSKYHAELQQLWMRGHYKEHAKIRGRDLGAVDKYRIRKKFPLPKTIWDGE 265
IL H D L+++ + H K+ L + + +
Sbjct: 100 NTILYGHRMKDGSMFGSLKKMLDEEFFMSHRKLYYDTLFEGYDLEVFSVYTTTTD-FYYI 158
Query: 266 ETVYCFKERSRNALKECYDKNRYPNPDEKRQLSEITGLTLTQVSNWFKNRRQR 318
ET + + L++ +K+ Y +I +TL+ R
Sbjct: 159 ETDFSSDTEYTSFLEKIQEKSLYKTDTTVTAGDQI--VTLSTCDYALDPEAGR 209
>d1vpqa_ c.1.32.1 (A:) Hypothetical protein TM1631 {Thermotoga
maritima [TaxId: 2336]}
Length = 260
Score = 26.5 bits (58), Expect = 5.9
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 10/73 (13%)
Query: 13 EQIDCLCEAMQQSGDFDKLAMFLWSLPPQ--------EAIRGQESVLRARAVVAYKRHAF 64
E ++ ++ + +L M L P E + V ++ +++
Sbjct: 91 EDMENFTRQIEPLIEEQRLKMTLAQFPFSFKFSRKNVEYLEKLRESYPYELAVEFRHYSW 150
Query: 65 H--ELYAILESHN 75
E Y L +H
Sbjct: 151 DREETYEFLRNHG 163
Score = 26.5 bits (58), Expect = 5.9
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 10/73 (13%)
Query: 152 EQIDCLCEAMQQSGDFDKLAMFLWSLPPQ--------EAIRGQESVLRARAVVAYKRHAF 203
E ++ ++ + +L M L P E + V ++ +++
Sbjct: 91 EDMENFTRQIEPLIEEQRLKMTLAQFPFSFKFSRKNVEYLEKLRESYPYELAVEFRHYSW 150
Query: 204 H--ELYAILESHN 214
E Y L +H
Sbjct: 151 DREETYEFLRNHG 163
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.406
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,521,306
Number of extensions: 72626
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 75
Length of query: 390
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,213,086
Effective search space: 367565058
Effective search space used: 367565058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)