BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8149
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70
KWT E+ E+ ++ + KFG IS I RT+ Q+KS
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKS 48
>pdb|2XAF|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 482
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70
+WT E+ + + +RK+G + ISD I ++++ Q+K+
Sbjct: 382 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 419
>pdb|2IW5|B Chain B, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|B Chain B, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|B Chain B, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 235
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70
+WT E+ + + +RK+G + ISD I ++++ Q+K+
Sbjct: 135 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 172
>pdb|2V1D|B Chain B, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|B Chain B, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 178
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70
+WT E+ + + +RK+G + ISD I ++++ Q+K+
Sbjct: 78 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 115
>pdb|2X0L|B Chain B, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 133
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70
+WT E+ + + +RK+G + ISD I ++++ Q+K+
Sbjct: 75 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 112
>pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
pdb|1D2F|B Chain B, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
Length = 390
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 17 DLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60
+ + L +P +P+G WT +++E++ + + G + +ISD I
Sbjct: 162 ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHG--VRVISDEI 203
>pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630 Crystallized With
Magnesium Formate
pdb|4DGT|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630 Crystallized With
Magnesium Formate
pdb|4DQ6|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630
pdb|4DQ6|B Chain B, Crystal Structure Of Plp-Bound Putative Aminotransferase
From Clostridium Difficile 630
Length = 391
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 13 NKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTI 65
NK+ D+ L + P +P G WT ++++ L + K + IISD I I
Sbjct: 160 NKIKDVKLFILCNPHNPVGRVWTKDELKKLGDICLKHN--VKIISDEIHSDII 210
>pdb|1ZQ1|A Chain A, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
pdb|1ZQ1|B Chain B, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
Length = 438
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 22 LHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRT 64
S D P W +IE L++ RK DE V + D+I+++
Sbjct: 265 FRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKIEEKV 307
>pdb|3I5P|A Chain A, Nup170(Aa979-1502), S.Cerevisiae
Length = 525
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 1 VGDIFLAAGTAFNKLADLTLQLHSTPDSPSG--NKWTAEDIEMLKETVRKFGD 51
+ IF+ AG +FNK+ + +L T DS + NK I ++ RKF D
Sbjct: 435 IVSIFITAGVSFNKMYYILKELIETSDSDNSVFNKEMTWLIHEWYKSDRKFRD 487
>pdb|2X7V|A Chain A, Crystal Structure Of Thermotoga Maritima Endonuclease Iv
In The Presence Of Zinc
pdb|2X7W|A Chain A, Crystal Structure Of Thermotoga Maritima Endonuclease Iv
In The Presence Of Cadmium And Zinc
Length = 287
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 1 VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDEL 53
+G+ A +F ++ ++ L ++P GN+ AEDI+ + E + KFG E+
Sbjct: 238 IGEEGFAVFFSFKEIQEVPWIL----ETPGGNEEHAEDIKKVFEIIEKFGIEV 286
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 28 SPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL 72
S S WTAE+ +L + ++++G + II+ RT IK+
Sbjct: 59 SISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
>pdb|3I5Q|B Chain B, Nup170(Aa1253-1502) At 2.2 A, S.Cerevisiae
pdb|3I5Q|A Chain A, Nup170(Aa1253-1502) At 2.2 A, S.Cerevisiae
Length = 252
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 4 IFLAAGTAFNKLADLTLQLHSTPDSPSG--NKWTAEDIEMLKETVRKFGD 51
IF+ AG +FNK+ + +L T DS + NK I ++ RKF D
Sbjct: 165 IFITAGVSFNKMYYILKELIETSDSDNSVFNKEMTWLIHEWYKSDRKFRD 214
>pdb|4HNO|A Chain A, High Resolution Crystal Structure Of Dna
Apurinic/apyrimidinic (ap) Endonuclease Iv Nfo From
Thermatoga Maritima
Length = 288
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 1 VGDIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDE 52
+G+ A +F ++ ++ L ++P GN+ AEDI+ + E + KFG E
Sbjct: 241 IGEEGFAVFFSFKEIQEVPWIL----ETPGGNEEHAEDIKKVFEIIEKFGIE 288
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 23 HSTPDSPSGNKWTAEDIEMLKETVRKFGD 51
H T + KWT E+ E +K V+K+G+
Sbjct: 3 HMTTNITKKQKWTVEESEWVKAGVQKYGE 31
>pdb|3O6X|A Chain A, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|B Chain B, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|C Chain C, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|D Chain D, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|E Chain E, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
pdb|3O6X|F Chain F, Crystal Structure Of The Type Iii Glutamine Synthetase
From Bacteroides Fragilis
Length = 729
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 35 TAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAF 77
+A+ E++KE + V++ D + R ++ K N K+KAF
Sbjct: 646 SADRKELIKEISHRVSAIKVLVRDMTEARKVANHKENFKEKAF 688
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,523,937
Number of Sequences: 62578
Number of extensions: 105495
Number of successful extensions: 314
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 21
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)