BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8149
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DCT6|BAP18_MOUSE Chromatin complexes subunit BAP18 OS=Mus musculus GN=Bap18 PE=1
SV=1
Length = 171
Score = 108 bits (271), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 106/183 (57%), Gaps = 30/183 (16%)
Query: 1 VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
VG+IF AAG AF KL +LT+QLH DS P+G KWT +IEML+ V++FGD+L IS
Sbjct: 8 VGEIFSAAGAAFTKLGELTMQLHPVSDSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 67
Query: 60 IKDRTISQIKSNLKKKAFEDAGLPIQQQVAP---PQQIVQQVVQQQHQQVVQAPQMVQTP 116
IK+RT++QIK+ +K+K +ED+G+P+ + +P P+++ V+ + + + +
Sbjct: 68 IKERTVAQIKTTVKRKVYEDSGIPLPAE-SPKKGPKKMTSGVLSPPNAPPPSSSSVPE-- 124
Query: 117 TRVVQQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESE--VDVEGL---PEEVKL 171
A VP P+ Q+ A+VTL+ LN + VDVEGL P KL
Sbjct: 125 --------AGVP-PIKKQK---------ADVTLSALNDSDANSDLVDVEGLGETPPAKKL 166
Query: 172 QFD 174
FD
Sbjct: 167 NFD 169
>sp|Q8IXM2|BAP18_HUMAN Chromatin complexes subunit BAP18 OS=Homo sapiens GN=BAP18 PE=1
SV=1
Length = 172
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 103/183 (56%), Gaps = 29/183 (15%)
Query: 1 VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
VG+IF AAG AF KL +LT+QLH DS P+G KWT +IEML+ V++FGD+L IS
Sbjct: 8 VGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 67
Query: 60 IKDRTISQIKSNLKKKAFEDAGLPIQQQVAP---PQQIVQQVVQQQHQQVVQAPQMVQTP 116
IK+RT++QIK+ +K+K +ED+G+P+ + +P P+++ V+ + V
Sbjct: 68 IKERTVAQIKATVKRKVYEDSGIPLPAE-SPKKGPKKVASGVLSPPPAAPPPSSSSVPE- 125
Query: 117 TRVVQQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESE--VDVEGL---PEEVKL 171
A P P+ Q+ A+VTL+ LN + VD+EGL P KL
Sbjct: 126 --------AGGP-PIKKQK---------ADVTLSALNDSDANSDVVDIEGLGETPPAKKL 167
Query: 172 QFD 174
FD
Sbjct: 168 NFD 170
>sp|Q32LD1|BAP18_BOVIN Chromatin complexes subunit BAP18 OS=Bos taurus GN=BAP18 PE=2 SV=1
Length = 172
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 102/183 (55%), Gaps = 29/183 (15%)
Query: 1 VGDIFLAAGTAFNKLADLTLQLHSTPDS-PSGNKWTAEDIEMLKETVRKFGDELVIISDR 59
VG+IF AAG AF KL +LT+QLH DS P+G KWT +IEML+ V++FGD+L IS
Sbjct: 8 VGEIFSAAGAAFTKLGELTMQLHPVADSSPAGAKWTETEIEMLRAAVKRFGDDLNHISCV 67
Query: 60 IKDRTISQIKSNLKKKAFEDAGLPIQQQVAP---PQQIVQQVVQQQHQQVVQAPQMVQTP 116
IK+RT++QIK+ +K+K +ED+G+P+ +P P+++ V+ + V
Sbjct: 68 IKERTVAQIKATVKRKVYEDSGIPLPAD-SPKKGPKKVASGVLSPPPTAPPPSSSSVPE- 125
Query: 117 TRVVQQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESE--VDVEGL---PEEVKL 171
A P P+ Q+ A+VTL+ LN + VD+EGL P KL
Sbjct: 126 --------AGGP-PIKKQK---------ADVTLSALNDSDANSDLVDIEGLGETPPTKKL 167
Query: 172 QFD 174
FD
Sbjct: 168 NFD 170
>sp|Q9SIV0|SUR1_ARATH S-alkyl-thiohydroximate lyase SUR1 OS=Arabidopsis thaliana GN=SUR1
PE=1 SV=1
Length = 462
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 25 TPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTI 65
P++P GN ++ + ++ + ET RK G +++ISD + DRTI
Sbjct: 212 NPNNPCGNVYSHDHLKKVAETARKLG--IMVISDEVYDRTI 250
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 13 NKLADLTLQLHSTPDSPSGN--KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70
N L + + +P P+ + KWT E+ E+ ++ + KFG I+ +K RT+ Q+KS
Sbjct: 95 NSLQKSSKAMVDSPAKPASHSVKWTVEEKELFEQGLAKFGRRWTKIATLLKSRTVLQVKS 154
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 20 LQLHSTPDSPSGN--KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70
+ +HS P P+ KWT E+ E+ ++ + KFG IS I RT+ Q+KS
Sbjct: 106 IMVHS-PTKPASYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKS 157
>sp|Q6P116|RCOR2_DANRE REST corepressor 2 OS=Danio rerio GN=rcor2 PE=2 SV=1
Length = 536
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 26 PDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70
P+ ++WT E+ + + VR++G + I+D I ++T++Q+ S
Sbjct: 325 PNQKINSRWTTEEQLLAVQAVRRYGKDFAAIADVIGNKTVAQVSS 369
>sp|Q9P2K3|RCOR3_HUMAN REST corepressor 3 OS=Homo sapiens GN=RCOR3 PE=1 SV=2
Length = 495
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS---NLKKK 75
+WT E+ + + VRK+G + I+D I ++T+ Q+K+ N +++
Sbjct: 289 RWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRR 334
>sp|Q9Y6K1|DNM3A_HUMAN DNA (cytosine-5)-methyltransferase 3A OS=Homo sapiens GN=DNMT3A
PE=1 SV=4
Length = 912
Score = 33.5 bits (75), Expect = 0.87, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 56 ISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQA-PQMVQ 114
IS R +D +++ K +KKA AG+ ++ P + Q+V +A P VQ
Sbjct: 198 ISKRKRDEWLARWKREAEKKAKVIAGMNAVEENQGPGE---------SQKVEEASPPAVQ 248
Query: 115 TPTRVVQQTVATVPVPVSA 133
PT TVAT P PV +
Sbjct: 249 QPTDPASPTVATTPEPVGS 267
>sp|Q1LZ53|DNM3A_RAT DNA (cytosine-5)-methyltransferase 3A OS=Rattus norvegicus
GN=Dnmt3a PE=2 SV=1
Length = 908
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 56 ISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQA-PQMVQ 114
IS R +D +++ K +KKA + +A + + + Q+V +A P VQ
Sbjct: 194 ISKRKRDEWLARWKREAEKKA---------KVIAVMNAVEESQASGESQKVEEASPPAVQ 244
Query: 115 TPTRVVQQTVATVPVPVSA 133
PT TVAT P PV A
Sbjct: 245 QPTDPASPTVATTPEPVGA 263
>sp|O83754|END3_TREPA Endonuclease III OS=Treponema pallidum (strain Nichols) GN=nth PE=3
SV=1
Length = 211
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 54 VIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMV 113
V++S + D+++++ + L F+ A P Q +A ++ + ++ + +A +++
Sbjct: 39 VLLSAQATDKSVNKATAAL----FDVADTP-QAMLALGEERLCSYIRTINLYPTKARRII 93
Query: 114 QTPTRVVQQTVATVPVPVSAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGL 165
++++ A VP A + L HK+A V LNM P VD L
Sbjct: 94 ALSAELIERFAAQVPCDAHALESLPGVGHKTANVVLNMGFGIPTIAVDTHIL 145
>sp|Q9D818|SAPC2_MOUSE Suppressor APC domain-containing protein 2 OS=Mus musculus
GN=Sapcd2 PE=2 SV=1
Length = 391
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 26 PDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAGL 82
P SPS W + I MLKE R E+ S+RI + Q KS L K+ FE L
Sbjct: 324 PPSPSTPVWQQQTILMLKEQNRLLTQEVTDKSERITQ--LEQEKSALIKQLFEARAL 378
>sp|Q6PDK2|MLL2_MOUSE Histone-lysine N-methyltransferase MLL2 OS=Mus musculus GN=Mll2 PE=1
SV=2
Length = 5588
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 82 LPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVVQQTVATVPVPVSAQQQLLSG 140
LP+ + PPQQ+ + + + Q+ +Q P +QQ +A VS Q +LSG
Sbjct: 3297 LPLPHEPGPPQQLALGIGSTRQPGLGQSMVPIQPPAHALQQRLAPSVAMVSNQGHMLSG 3355
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,440,572
Number of Sequences: 539616
Number of extensions: 2307034
Number of successful extensions: 20170
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 13580
Number of HSP's gapped (non-prelim): 4625
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)