Query psy8149
Match_columns 182
No_of_seqs 61 out of 63
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 19:51:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4834|consensus 100.0 7.1E-31 1.5E-35 227.3 3.4 166 1-182 95-280 (280)
2 KOG4834|consensus 99.4 5.6E-15 1.2E-19 128.8 -1.9 68 20-88 1-68 (280)
3 PF00249 Myb_DNA-binding: Myb- 98.9 1.9E-09 4.2E-14 70.3 4.8 43 32-74 2-46 (48)
4 smart00717 SANT SANT SWI3, AD 98.6 6E-08 1.3E-12 59.6 4.8 43 32-74 2-45 (49)
5 TIGR01557 myb_SHAQKYF myb-like 98.6 4.6E-08 9.9E-13 68.0 4.2 44 31-74 3-52 (57)
6 PF13921 Myb_DNA-bind_6: Myb-l 98.6 7E-08 1.5E-12 64.6 4.7 43 34-76 1-43 (60)
7 cd00167 SANT 'SWI3, ADA2, N-Co 98.5 1.8E-07 3.8E-12 56.9 4.5 41 33-73 1-42 (45)
8 KOG1279|consensus 97.6 7.5E-05 1.6E-09 70.9 4.3 53 28-80 250-302 (506)
9 COG5259 RSC8 RSC chromatin rem 97.6 6.3E-05 1.4E-09 71.5 3.8 40 32-71 280-319 (531)
10 PLN03212 Transcription repress 97.5 0.0002 4.4E-09 63.0 6.2 57 31-87 78-137 (249)
11 PLN03091 hypothetical protein; 97.4 0.00043 9.4E-09 65.3 6.6 54 31-85 67-124 (459)
12 KOG0048|consensus 97.0 0.0013 2.7E-08 55.7 5.5 59 19-80 53-115 (238)
13 PLN03212 Transcription repress 96.6 0.002 4.4E-08 56.8 3.8 41 31-71 25-67 (249)
14 PLN03091 hypothetical protein; 96.0 0.0056 1.2E-07 58.0 3.5 42 30-71 13-56 (459)
15 PF13837 Myb_DNA-bind_4: Myb/S 95.5 0.047 1E-06 38.3 5.6 42 32-73 2-61 (90)
16 KOG0049|consensus 93.9 0.073 1.6E-06 53.4 4.5 61 16-79 348-409 (939)
17 COG5114 Histone acetyltransfer 92.2 0.6 1.3E-05 43.8 7.5 58 31-88 63-121 (432)
18 KOG0457|consensus 91.4 0.54 1.2E-05 44.7 6.4 56 30-85 71-127 (438)
19 KOG0048|consensus 91.4 0.16 3.5E-06 43.0 2.7 47 31-77 9-65 (238)
20 COG5118 BDP1 Transcription ini 91.3 0.3 6.4E-06 46.5 4.6 43 32-74 366-408 (507)
21 KOG4329|consensus 88.4 0.51 1.1E-05 44.7 3.7 52 15-68 263-315 (445)
22 KOG0724|consensus 87.7 0.55 1.2E-05 41.0 3.2 45 32-76 54-98 (335)
23 KOG4167|consensus 86.8 0.8 1.7E-05 46.5 4.2 48 22-69 608-657 (907)
24 PF09420 Nop16: Ribosome bioge 85.2 1.1 2.4E-05 36.2 3.6 45 30-74 113-161 (164)
25 KOG4468|consensus 84.9 1 2.2E-05 45.0 3.8 42 31-72 88-139 (782)
26 TIGR01765 tspaseT_teng_N trans 82.8 3.9 8.4E-05 28.9 5.1 45 35-79 9-54 (73)
27 PF07750 GcrA: GcrA cell cycle 81.3 1.7 3.7E-05 35.7 3.2 42 33-75 2-43 (162)
28 KOG2009|consensus 81.2 0.81 1.8E-05 44.9 1.6 46 31-76 409-454 (584)
29 PF00191 Annexin: Annexin; In 78.4 3.1 6.8E-05 27.7 3.3 34 38-71 2-35 (66)
30 KOG1194|consensus 73.3 4.1 9E-05 39.6 3.8 50 30-79 368-421 (534)
31 PLN03142 Probable chromatin-re 71.6 5.9 0.00013 41.2 4.7 42 32-73 825-867 (1033)
32 KOG0051|consensus 71.5 3.6 7.8E-05 40.7 3.0 35 30-64 383-417 (607)
33 PF12776 Myb_DNA-bind_3: Myb/S 70.7 18 0.00039 25.5 5.8 41 33-73 1-59 (96)
34 PLN03162 golden-2 like transcr 70.2 6.7 0.00014 37.7 4.4 43 32-74 238-285 (526)
35 KOG1194|consensus 67.8 6.6 0.00014 38.3 3.8 39 31-69 187-225 (534)
36 PF12153 CAP18_C: LPS binding 62.8 15 0.00032 23.1 3.5 23 40-62 2-24 (28)
37 PF14615 Rsa3: Ribosome-assemb 61.7 7.4 0.00016 26.5 2.2 31 42-72 7-39 (47)
38 COG0275 Predicted S-adenosylme 61.7 7.8 0.00017 35.7 3.0 52 9-63 117-174 (314)
39 PF04504 DUF573: Protein of un 59.1 23 0.0005 26.7 4.7 48 32-79 5-68 (98)
40 PF05524 PEP-utilisers_N: PEP- 58.2 20 0.00043 26.9 4.2 30 35-64 33-62 (123)
41 KOG4771|consensus 57.1 21 0.00046 31.1 4.7 44 34-77 156-199 (210)
42 KOG3841|consensus 55.7 4.7 0.0001 38.5 0.6 57 29-85 74-154 (455)
43 cd07628 BAR_Atg24p The Bin/Amp 55.4 47 0.001 27.3 6.3 41 3-62 39-79 (185)
44 PLN02305 lipoxygenase 54.2 11 0.00025 39.0 3.0 31 33-65 851-881 (918)
45 PLN02264 lipoxygenase 54.1 11 0.00025 39.0 3.0 32 33-66 852-883 (919)
46 KOG0050|consensus 52.5 16 0.00035 36.2 3.6 40 31-70 7-47 (617)
47 PF00305 Lipoxygenase: Lipoxyg 52.3 13 0.00028 36.9 3.0 33 32-66 615-647 (667)
48 KOG3554|consensus 49.2 12 0.00026 37.0 2.2 27 32-58 286-312 (693)
49 COG1395 Predicted transcriptio 49.1 2.7 5.9E-05 38.5 -2.0 75 9-83 207-288 (313)
50 KOG0049|consensus 48.9 19 0.00042 36.9 3.6 57 28-84 409-470 (939)
51 PTZ00134 40S ribosomal protein 47.3 96 0.0021 25.7 6.9 58 31-88 58-137 (154)
52 smart00426 TEA TEA domain. 45.3 37 0.00079 25.1 3.7 42 31-72 3-65 (68)
53 COG2036 HHT1 Histones H3 and H 44.1 25 0.00055 26.9 2.8 45 32-76 35-85 (91)
54 PRK13923 putative spore coat p 43.1 47 0.001 28.1 4.6 33 32-64 6-52 (170)
55 PF00196 GerE: Bacterial regul 42.5 52 0.0011 21.6 3.9 41 34-76 4-46 (58)
56 PF04883 HK97-gp10_like: Bacte 41.1 65 0.0014 21.4 4.3 37 41-77 2-38 (78)
57 cd04780 HTH_MerR-like_sg5 Heli 40.9 1.1E+02 0.0023 22.7 5.8 55 23-77 27-88 (95)
58 PF12244 DUF3606: Protein of u 39.1 33 0.00071 23.7 2.6 22 40-61 35-56 (57)
59 PRK12346 transaldolase A; Prov 37.9 39 0.00086 30.8 3.6 26 38-63 290-315 (316)
60 PLN02337 lipoxygenase 36.9 35 0.00077 35.3 3.4 33 32-66 793-825 (866)
61 TIGR01725 phge_HK97_gp10 phage 36.7 96 0.0021 22.8 4.9 43 39-81 4-47 (119)
62 PRK03573 transcriptional regul 36.0 52 0.0011 25.0 3.5 26 32-57 116-141 (144)
63 cd01105 HTH_GlnR-like Helix-Tu 34.9 1.1E+02 0.0025 22.0 5.0 55 23-81 28-85 (88)
64 PRK12309 transaldolase/EF-hand 34.5 47 0.001 30.9 3.6 26 39-64 298-323 (391)
65 KOG4282|consensus 33.7 90 0.0019 27.6 5.1 42 32-73 55-110 (345)
66 cd00592 HTH_MerR-like Helix-Tu 33.1 1.5E+02 0.0032 21.2 5.3 43 24-66 28-72 (100)
67 PF14164 YqzH: YqzH-like prote 32.6 41 0.0009 24.5 2.3 34 40-73 8-51 (64)
68 PF00631 G-gamma: GGL domain; 32.0 42 0.0009 23.4 2.2 22 37-61 9-30 (68)
69 COG3909 Cytochrome c556 [Energ 31.8 2.7E+02 0.0058 23.4 7.2 67 2-72 57-129 (147)
70 PF07176 DUF1400: Alpha/beta h 31.4 64 0.0014 25.3 3.4 68 11-84 23-112 (127)
71 PRK12897 methionine aminopepti 30.2 1.4E+02 0.003 25.0 5.4 44 35-78 6-50 (248)
72 PF07508 Recombinase: Recombin 28.7 1.1E+02 0.0024 21.4 4.0 43 36-78 1-55 (102)
73 PF00923 Transaldolase: Transa 28.4 66 0.0014 28.0 3.3 24 37-60 245-268 (287)
74 cd01106 HTH_TipAL-Mta Helix-Tu 28.1 1.9E+02 0.0042 21.1 5.3 41 32-73 37-79 (103)
75 PF01486 K-box: K-box region; 28.1 45 0.00097 24.6 1.9 21 37-57 26-47 (100)
76 KOG0018|consensus 28.0 1.4E+02 0.003 32.1 6.0 42 30-73 645-686 (1141)
77 TIGR00006 S-adenosyl-methyltra 27.5 62 0.0013 29.3 3.0 63 9-74 113-187 (305)
78 COG5347 GTPase-activating prot 27.1 40 0.00086 30.8 1.8 50 32-81 66-121 (319)
79 cd04782 HTH_BltR Helix-Turn-He 27.1 2.5E+02 0.0055 20.5 5.9 54 23-76 27-83 (97)
80 COG1549 Queuine tRNA-ribosyltr 27.0 58 0.0012 32.1 2.9 23 27-49 299-321 (519)
81 COG1168 MalY Bifunctional PLP- 26.8 55 0.0012 31.1 2.7 24 28-51 169-192 (388)
82 PRK05269 transaldolase B; Prov 26.8 79 0.0017 28.7 3.6 27 38-64 291-317 (318)
83 PRK04053 rps13p 30S ribosomal 26.7 1.8E+02 0.0038 24.0 5.3 66 20-88 45-132 (149)
84 cd02684 MIT_2 MIT: domain cont 26.7 1.5E+02 0.0032 21.3 4.4 43 36-78 16-58 (75)
85 PF01466 Skp1: Skp1 family, di 26.5 60 0.0013 23.1 2.3 19 54-72 37-55 (78)
86 TIGR00327 secE_euk_arch protei 26.4 67 0.0015 23.0 2.5 34 41-74 1-34 (61)
87 smart00076 IFabd Interferon al 25.9 2.5E+02 0.0053 22.0 5.8 37 20-58 31-67 (117)
88 cd04774 HTH_YfmP Helix-Turn-He 25.8 2.4E+02 0.0051 20.8 5.4 31 32-62 36-69 (96)
89 PRK10378 inactive ferrous ion 25.4 1.6E+02 0.0034 27.7 5.3 53 8-60 320-372 (375)
90 PRK00050 16S rRNA m(4)C1402 me 25.1 73 0.0016 28.6 3.1 60 11-73 113-184 (296)
91 COG0146 HyuB N-methylhydantoin 24.8 1.3E+02 0.0027 30.0 4.8 38 39-76 194-232 (563)
92 COG1283 NptA Na+/phosphate sym 24.7 1.3E+02 0.0029 29.5 4.9 32 49-81 408-440 (533)
93 PF15511 CENP-T: Centromere ki 24.3 82 0.0018 29.3 3.3 36 31-66 372-411 (414)
94 PF10552 ORF6C: ORF6C domain; 24.1 1E+02 0.0022 23.4 3.3 32 37-68 22-53 (116)
95 TIGR00874 talAB transaldolase. 23.6 97 0.0021 28.3 3.6 26 38-63 291-316 (317)
96 cd01109 HTH_YyaN Helix-Turn-He 23.5 3.1E+02 0.0068 20.3 6.0 31 32-62 37-69 (113)
97 PF02954 HTH_8: Bacterial regu 23.4 1.3E+02 0.0028 19.0 3.2 24 38-61 6-29 (42)
98 PF01627 Hpt: Hpt domain; Int 23.2 2.3E+02 0.005 18.7 4.9 28 47-74 8-38 (90)
99 PF13873 Myb_DNA-bind_5: Myb/S 23.1 2.4E+02 0.0051 19.3 4.7 18 32-49 3-20 (78)
100 PF12805 FUSC-like: FUSC-like 23.0 88 0.0019 26.9 3.0 36 39-74 208-243 (284)
101 PF00524 PPV_E1_N: E1 Protein, 22.8 22 0.00047 28.6 -0.7 17 69-85 109-127 (130)
102 COG1385 Uncharacterized protei 22.6 58 0.0013 28.4 1.9 15 31-45 201-215 (246)
103 PF01195 Pept_tRNA_hydro: Pept 22.6 1.7E+02 0.0038 24.1 4.6 36 32-67 147-182 (184)
104 cd04763 HTH_MlrA-like Helix-Tu 22.5 2.1E+02 0.0046 19.1 4.3 39 22-60 27-67 (68)
105 PRK09400 secE preprotein trans 22.4 1.7E+02 0.0037 20.7 3.9 36 39-74 3-38 (61)
106 PF02538 Hydantoinase_B: Hydan 22.3 1.7E+02 0.0037 28.0 5.0 36 39-74 195-231 (527)
107 cd01282 HTH_MerR-like_sg3 Heli 22.2 3.2E+02 0.0069 20.4 5.7 40 23-62 27-68 (112)
108 cd04773 HTH_TioE_rpt2 Second H 22.1 3.3E+02 0.0072 20.3 5.7 41 22-62 26-69 (108)
109 CHL00137 rps13 ribosomal prote 22.1 2.2E+02 0.0048 22.5 4.9 51 31-88 45-102 (122)
110 cd07596 BAR_SNX The Bin/Amphip 22.0 2.1E+02 0.0046 22.3 4.8 36 33-68 82-117 (218)
111 PRK11876 petM cytochrome b6-f 21.8 66 0.0014 20.7 1.5 13 1-13 2-14 (32)
112 COG5147 REB1 Myb superfamily p 21.5 58 0.0013 31.8 1.8 59 13-71 2-61 (512)
113 PRK11713 16S ribosomal RNA met 21.4 63 0.0014 27.2 1.8 15 31-45 187-201 (234)
114 PF13936 HTH_38: Helix-turn-he 21.4 1.4E+02 0.003 19.1 3.1 41 32-74 3-43 (44)
115 PRK02998 prsA peptidylprolyl i 21.2 2.3E+02 0.0051 24.5 5.3 46 33-78 68-114 (283)
116 PF05141 DIT1_PvcA: Pyoverdine 21.2 1.3E+02 0.0028 27.0 3.8 38 43-80 133-171 (278)
117 PRK11517 transcriptional regul 21.1 1.7E+02 0.0037 22.2 4.0 45 33-77 147-200 (223)
118 PRK09514 zntR zinc-responsive 21.1 3.1E+02 0.0068 21.5 5.6 40 24-63 29-71 (140)
119 COG0099 RpsM Ribosomal protein 20.7 1.1E+02 0.0024 24.8 3.0 46 32-88 46-102 (121)
120 PRK07281 methionine aminopepti 20.6 2.7E+02 0.0057 24.6 5.6 44 35-78 6-50 (286)
121 PF02771 Acyl-CoA_dh_N: Acyl-C 20.5 2.1E+02 0.0045 20.0 4.1 44 37-84 2-47 (113)
122 PF12720 DUF3807: Protein of u 20.4 1.1E+02 0.0023 25.9 2.9 13 32-44 48-60 (172)
123 cd02677 MIT_SNX15 MIT: domain 20.4 2.6E+02 0.0056 20.1 4.6 41 37-77 17-57 (75)
124 PF04212 MIT: MIT (microtubule 20.4 1.9E+02 0.004 19.6 3.7 39 38-76 17-55 (69)
125 TIGR02043 ZntR Zn(II)-responsi 20.3 3.7E+02 0.008 20.7 5.8 41 23-63 28-71 (131)
126 PTZ00059 dynein light chain; P 20.3 1.1E+02 0.0024 22.6 2.8 22 39-61 23-44 (90)
127 KOG1586|consensus 20.3 70 0.0015 29.3 1.9 81 5-88 50-148 (288)
128 PF04452 Methyltrans_RNA: RNA 20.3 54 0.0012 27.3 1.2 14 31-44 184-197 (225)
129 cd00095 IFab Interferon alpha, 20.2 3.4E+02 0.0073 22.0 5.7 51 22-74 65-123 (152)
130 PF10334 DUF2421: Protein of u 20.1 4.5E+02 0.0098 22.0 6.7 58 4-61 50-108 (229)
131 PF11035 SnAPC_2_like: Small n 20.0 1.7E+02 0.0038 27.5 4.4 50 31-80 21-77 (344)
No 1
>KOG4834|consensus
Probab=99.96 E-value=7.1e-31 Score=227.28 Aligned_cols=166 Identities=16% Similarity=0.054 Sum_probs=131.3
Q ss_pred ChhHhhHhhHHHHHhhhhhhccccCCC-CCCC-----CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 1 VGDIFLAAGTAFNKLADLTLQLHSTPD-SPSG-----NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 1 V~EIF~aAG~AF~kLgeLTmqLh~~~d-s~~~-----~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
|+|||.++|++|.++++++|+|||+.| ++.| .+|++-+++||++|+++||+++|.|++++++||+.||+++.+|
T Consensus 95 V~~sf~~~q~~~~~~~~~~~~LHPv~nss~~G~~~~~~~~~q~~~~~l~AAv~~~~~taNh~~~~~~~~tiqQ~tsT~a~ 174 (280)
T KOG4834|consen 95 VSNSFQQYQRGGPGGSSAMSSLHPVMNSSNNGAANNMMAMDQPAPVNLAAAVAEVFLTANHAFQKLGDLTLQQHTTTDAD 174 (280)
T ss_pred hhhhhHHhhhccccccchheeccccccCCCccchhhhhhhccccHHHHHHHHHHHHhhcccchhhhhceeeeccccccch
Confidence 799999999999999999999999999 6666 6999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCCCCCCchhHHHHHHhhhhhhhcCCccccCCc---------ccccccccccccccccchhhcccCCCcc
Q psy8149 75 KAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPT---------RVVQQTVATVPVPVSAQQQLLSGSHKSA 145 (182)
Q Consensus 75 K~~edag~p~~~~~~~p~~~~k~~~~~q~k~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~k~k~a 145 (182)
++|++.++++.+.+ +...++ +..++....+-.|+ +..| .+++.++++.+.++++. +..
T Consensus 175 ~V~~~~~~~~~~~~--~~v~P~-------~sAs~~i~~VLSP~~~~~~~~~~~~nP-Passa~Vp~p~GpP~~~---~~~ 241 (280)
T KOG4834|consen 175 EVKWSEKEAVIPTR--YTVAPS-------SSASTVILNVLSPPGGGGMPHLQSQNP-PASSAPVPLPRGPPTTV---TRV 241 (280)
T ss_pred hhccccccccCCCC--ceeccc-------eeecccccccccCCCCCCCcccccCCC-CcccCCCCCCCCCCccc---eec
Confidence 99999999999988 444433 11111111111221 1111 13445677777777775 668
Q ss_pred chhhhcccCCCCC--cccccCCCcc---cccccccchhhhcC
Q psy8149 146 EVTLNMLNAHPES--EVDVEGLPEE---VKLQFDTTAQQVAN 182 (182)
Q Consensus 146 dVTLn~LN~s~~n--~vDvEGL~e~---~KL~Fd~~~eev~~ 182 (182)
++++..||++|.+ +||||||++. ||++|+ |+|+|
T Consensus 242 ~~~~~~LN~~~~~~d~VDvE~l~pt~~~Kk~~~~---e~v~~ 280 (280)
T KOG4834|consen 242 VAPHTLLNQGPPIKDLVDAESLIPTSWRKKSPET---EFVKN 280 (280)
T ss_pred cchhhhhccCCcccccccHhhcCCcchhhccchh---hhhcC
Confidence 9999999999875 8999999977 666665 56664
No 2
>KOG4834|consensus
Probab=99.45 E-value=5.6e-15 Score=128.80 Aligned_cols=68 Identities=16% Similarity=-0.020 Sum_probs=65.2
Q ss_pred hccccCCCCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhhhhcCCCCCCCC
Q psy8149 20 LQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQV 88 (182)
Q Consensus 20 mqLh~~~ds~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~edag~p~~~~~ 88 (182)
|||||...+|++ ||+++||+||.+.+-|||+||.+||-.|+.||+.|||..+|+|+||++|+|..+..
T Consensus 1 ~q~~~~~~~p~~-~~~~~~i~~~~~s~~r~~~~~~~~sls~~~~~~~q~~~~~k~~~~~~~g~p~~q~p 68 (280)
T KOG4834|consen 1 QQQQQGGHVPPV-ASNTVTIGTSANSQVRIGPSTQIRSLSNVALRHHQPVPIRKIVHHDTGGGPQFQPP 68 (280)
T ss_pred CCcCCCCCCCCc-cccceeecccccceEEecCcceeeeehhhhhhcccchhhhheeecccCCCcccCCC
Confidence 799999999984 99999999999999999999999999999999999999999999999999998755
No 3
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.92 E-value=1.9e-09 Score=70.27 Aligned_cols=43 Identities=35% Similarity=0.581 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHhhhh-HHHHHHHhh-hhhHHHHHHHHhh
Q psy8149 32 NKWTAEDIEMLKETVRKFGDE-LVIISDRIK-DRTISQIKSNLKK 74 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~d-L~kIS~~Ik-~RTv~QIKs~lKr 74 (182)
+.||++|.++|.+||..||.+ |.+|+..|. +||..|+|++..+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQN 46 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 689999999999999999999 999999999 9999999998654
No 4
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.64 E-value=6e-08 Score=59.61 Aligned_cols=43 Identities=30% Similarity=0.554 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 32 NKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
+.||++|.++|..++..|| .+|+.|+..|.+||..+|+...+.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 5899999999999999999 999999999999999999987653
No 5
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.62 E-value=4.6e-08 Score=68.04 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-hH---HHHHHHhh-hh-hHHHHHHHHhh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGD-EL---VIISDRIK-DR-TISQIKSNLKK 74 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~-dL---~kIS~~Ik-~R-Tv~QIKs~lKr 74 (182)
.-.||+|||..|.+||..||. || .+|++.|. +| |..||++|+-|
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QK 52 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQK 52 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHH
Confidence 457999999999999999999 99 99999987 67 99999999865
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.60 E-value=7e-08 Score=64.58 Aligned_cols=43 Identities=30% Similarity=0.586 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149 34 WTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKA 76 (182)
Q Consensus 34 WTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~ 76 (182)
||++|.+.|+.++..||.+|++||.++..||..||+...++.+
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHC
Confidence 9999999999999999999999999998899999999988833
No 7
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.52 E-value=1.8e-07 Score=56.93 Aligned_cols=41 Identities=32% Similarity=0.572 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHh
Q psy8149 33 KWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs~lK 73 (182)
.||++|...|..++..|| .+|..|+..+..||..|||....
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~ 42 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWR 42 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHH
Confidence 599999999999999999 99999999999999999998764
No 8
>KOG1279|consensus
Probab=97.56 E-value=7.5e-05 Score=70.88 Aligned_cols=53 Identities=19% Similarity=0.416 Sum_probs=46.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhhhhc
Q psy8149 28 SPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDA 80 (182)
Q Consensus 28 s~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~eda 80 (182)
...++-||+.|+-.|.+||..||+||++|+.||++||..|-=.+.-|-=++|.
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LPieD~ 302 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLPIEDP 302 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcCccch
Confidence 34567899999999999999999999999999999999998887777665554
No 9
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.56 E-value=6.3e-05 Score=71.45 Aligned_cols=40 Identities=18% Similarity=0.436 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN 71 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~ 71 (182)
--|+.+|.-.|.++|.+|||||++||.||++||+.|---|
T Consensus 280 k~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~ 319 (531)
T COG5259 280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILH 319 (531)
T ss_pred ccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHH
Confidence 3699999999999999999999999999999999996544
No 10
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.53 E-value=0.0002 Score=63.01 Aligned_cols=57 Identities=23% Similarity=0.344 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH---hhhhhhhcCCCCCCC
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL---KKKAFEDAGLPIQQQ 87 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l---KrK~~edag~p~~~~ 87 (182)
.+.||++|.+.|.+++..||..|.+|+..+..||-.|||..- -||.+...|+.....
T Consensus 78 kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~ 137 (249)
T PLN03212 78 RGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTH 137 (249)
T ss_pred cCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCC
Confidence 689999999999999999999999999999999999998542 345555566655443
No 11
>PLN03091 hypothetical protein; Provisional
Probab=97.36 E-value=0.00043 Score=65.27 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH----HhhhhhhhcCCCCC
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN----LKKKAFEDAGLPIQ 85 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~----lKrK~~edag~p~~ 85 (182)
.+.||.+|-+.|.+.+..||..|.+|+..+..||-.+||.. +||+ +.+.||...
T Consensus 67 KgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKk-lr~~~I~p~ 124 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK-LRQRGIDPN 124 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHH-HHHcCCCCC
Confidence 68999999999999999999999999999999999999864 4444 455666543
No 12
>KOG0048|consensus
Probab=97.03 E-value=0.0013 Score=55.74 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=51.7
Q ss_pred hhccccCCCCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH----HHhhhhhhhc
Q psy8149 19 TLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS----NLKKKAFEDA 80 (182)
Q Consensus 19 TmqLh~~~ds~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs----~lKrK~~eda 80 (182)
+.+|.|.-. .|.||+||-+.+.++-..||..|..|+.++=.||--.||. ++|||+-.-.
T Consensus 53 ~NyLrP~ik---rg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 53 TNYLRPDLK---RGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred hcccCCCcc---CCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 456667544 7899999999999999999999999999999999999985 6899987665
No 13
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.62 E-value=0.002 Score=56.80 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhh-hhhHHHHHHH
Q psy8149 31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRIK-DRTISQIKSN 71 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik-~RTv~QIKs~ 71 (182)
.++||.||=+.|+.+|++||. +|..|+..+. .||-.|+|..
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReR 67 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLR 67 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHH
Confidence 579999999999999999995 7999999995 8999999984
No 14
>PLN03091 hypothetical protein; Provisional
Probab=96.04 E-value=0.0056 Score=57.95 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhh-hhhHHHHHHH
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGD-ELVIISDRIK-DRTISQIKSN 71 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik-~RTv~QIKs~ 71 (182)
..++||.+|=+.|+.+|.+||. +|.+|+..+. .||-.|.|..
T Consensus 13 rKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRER 56 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLR 56 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHH
Confidence 4589999999999999999996 6999999986 8999999865
No 15
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.49 E-value=0.047 Score=38.31 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHH------hhh--------hHHHHHHHhh----hhhHHHHHHHHh
Q psy8149 32 NKWTAEDIEMLKETVRK------FGD--------ELVIISDRIK----DRTISQIKSNLK 73 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~r------Fg~--------dL~kIS~~Ik----~RTv~QIKs~lK 73 (182)
.+||++|+..|.++... |++ -|..||+.+. .||..|+|...+
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~ 61 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWK 61 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 47999999999998877 543 6999999998 689999998765
No 16
>KOG0049|consensus
Probab=93.94 E-value=0.073 Score=53.37 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=50.1
Q ss_pred hhhhhccccCCCCCCCCCCCHHHHHHHHHHHHHh-hhhHHHHHHHhhhhhHHHHHHHHhhhhhhh
Q psy8149 16 ADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKF-GDELVIISDRIKDRTISQIKSNLKKKAFED 79 (182)
Q Consensus 16 geLTmqLh~~~ds~~~~KWTdeEiemLr~aV~rF-g~dL~kIS~~Ik~RTv~QIKs~lKrK~~ed 79 (182)
|..+--||| +-..|.||++|=-||..||.+| |.||-+|-+.+-+|+-.|.|..-.+.+..-
T Consensus 348 ~R~~~~LdP---sikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s 409 (939)
T KOG0049|consen 348 TRFSHTLDP---SVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRS 409 (939)
T ss_pred hhheeccCc---cccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHh
Confidence 334444566 4448999999999999999999 568999999999999999999887766543
No 17
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=92.24 E-value=0.6 Score=43.77 Aligned_cols=58 Identities=26% Similarity=0.290 Sum_probs=49.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh-HHHHHHHhhhhhHHHHHHHHhhhhhhhcCCCCCCCC
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDE-LVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQV 88 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~d-L~kIS~~Ik~RTv~QIKs~lKrK~~edag~p~~~~~ 88 (182)
..-|+.+|-=.|.+++...|=- |.-|+++|+.|+-..||+|--|-..|..=.|++...
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~es~~ypl~~i~ 121 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYDESKYYPLPDIT 121 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHhhcccccccccc
Confidence 3679999999999999999865 999999999999999999988766666667776544
No 18
>KOG0457|consensus
Probab=91.44 E-value=0.54 Score=44.70 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhh-HHHHHHHhhhhhHHHHHHHHhhhhhhhcCCCCC
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGDE-LVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQ 85 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~d-L~kIS~~Ik~RTv~QIKs~lKrK~~edag~p~~ 85 (182)
-.+-||.+|==.|.+|+..||=- |.-||+||++||--++|.|--+.-.+.-=.|++
T Consensus 71 ~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s~~~~~~ 127 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVNSPIFPLP 127 (438)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhcCcccccc
Confidence 45889999999999999999876 999999999999999999986554443333443
No 19
>KOG0048|consensus
Probab=91.37 E-value=0.16 Score=43.05 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh-HHHHHHHhh-hhhHHH--------HHHHHhhhhh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDE-LVIISDRIK-DRTISQ--------IKSNLKKKAF 77 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~d-L~kIS~~Ik-~RTv~Q--------IKs~lKrK~~ 77 (182)
.|-||.||=++|++-|+.||.. |+.|+..+. .|+=.+ .|-.|||..|
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~f 65 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNF 65 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCC
Confidence 4899999999999999999998 999999988 777555 4557887776
No 20
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=91.31 E-value=0.3 Score=46.52 Aligned_cols=43 Identities=26% Similarity=0.522 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
-+|+..|++.|-.||.-+|-|.+-||...=+|...|||-..++
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHH
Confidence 5899999999999999999999999999999999999987665
No 21
>KOG4329|consensus
Probab=88.41 E-value=0.51 Score=44.66 Aligned_cols=52 Identities=19% Similarity=0.572 Sum_probs=42.4
Q ss_pred hhhhhhccccCCCCCCCCCCCHHHHHHHHHHHHHhhhhHHHH-HHHhhhhhHHHH
Q psy8149 15 LADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVII-SDRIKDRTISQI 68 (182)
Q Consensus 15 LgeLTmqLh~~~ds~~~~KWTdeEiemLr~aV~rFg~dL~kI-S~~Ik~RTv~QI 68 (182)
|--|.|...+..|.-. -|+++|--.|.+++++||.|..-| ...+.+|+|...
T Consensus 263 lrr~rfnvk~~rd~l~--~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgEl 315 (445)
T KOG4329|consen 263 LRRLRFNVKTVRDDLS--GWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGEL 315 (445)
T ss_pred HHhcCCcceecccccc--cCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHH
Confidence 4456677777777433 599999999999999999999888 457889999876
No 22
>KOG0724|consensus
Probab=87.72 E-value=0.55 Score=41.00 Aligned_cols=45 Identities=13% Similarity=-0.032 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKA 76 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~ 76 (182)
..||+++++.|.++|..|+..|++|=+++..++..+|+.+.+.-.
T Consensus 54 ~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 98 (335)
T KOG0724|consen 54 PRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPF 98 (335)
T ss_pred cccchhhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCc
Confidence 479999999999999999999999999999999999999976544
No 23
>KOG4167|consensus
Probab=86.78 E-value=0.8 Score=46.52 Aligned_cols=48 Identities=15% Similarity=0.477 Sum_probs=41.3
Q ss_pred cccCCC-C-CCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHH
Q psy8149 22 LHSTPD-S-PSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIK 69 (182)
Q Consensus 22 Lh~~~d-s-~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIK 69 (182)
-|+..+ - ...-+||..|+-.|..|+-.+..|..+|.--|+++||.|--
T Consensus 608 ~h~la~Y~Y~gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCV 657 (907)
T KOG4167|consen 608 CHPLANYHYAGSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCV 657 (907)
T ss_pred ccccceeeecCcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHH
Confidence 367766 2 22479999999999999999999999999999999999853
No 24
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=85.24 E-value=1.1 Score=36.20 Aligned_cols=45 Identities=20% Similarity=0.401 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhh----hhhHHHHHHHHhh
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIK----DRTISQIKSNLKK 74 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik----~RTv~QIKs~lKr 74 (182)
..-+=++.|++-+...|.+||+|+...+.=.| ..|..|||.-+++
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~ 161 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRK 161 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHH
Confidence 34678999999999999999999999999888 7899999987765
No 25
>KOG4468|consensus
Probab=84.94 E-value=1 Score=45.02 Aligned_cols=42 Identities=17% Similarity=0.439 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHH----------hhhhhHHHHHHHH
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDR----------IKDRTISQIKSNL 72 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~----------Ik~RTv~QIKs~l 72 (182)
..-||-.|.+-|.+|++.||.|.++|-.. +.-+|-.|+|.+.
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~y 139 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYY 139 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHH
Confidence 45799999999999999999999999333 3334556666554
No 26
>TIGR01765 tspaseT_teng_N transposase, putative, N-terminal domain. This model represents the N-terminal region of a family of putative transposases found in the largest copy number in Thermoanaerobacter tengcongensis. The three homologs in Bacillus anthracis are each split into two ORFs and This model represents the upstream ORF.
Probab=82.85 E-value=3.9 Score=28.86 Aligned_cols=45 Identities=18% Similarity=0.415 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHh-hhhhHHHHHHHHhhhhhhh
Q psy8149 35 TAEDIEMLKETVRKFGDELVIISDRI-KDRTISQIKSNLKKKAFED 79 (182)
Q Consensus 35 TdeEiemLr~aV~rFg~dL~kIS~~I-k~RTv~QIKs~lKrK~~ed 79 (182)
++++.+.|.+.+.+|.+=.+-++++. +.++...+|..|.+..|.+
T Consensus 9 ~~e~~~~L~~tm~~f~~A~n~~~~~~~e~~~~~~~k~~L~~l~y~~ 54 (73)
T TIGR01765 9 EDKEKEYLLDLIRAFSSAVNFVIKRLLEGKSHSELKKELQRLYYLN 54 (73)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHhhH
Confidence 46777999999999999999998877 7788888899999999977
No 27
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=81.29 E-value=1.7 Score=35.66 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhh
Q psy8149 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKK 75 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK 75 (182)
-||||.|+.|+... .=|--...|+..++..|..-|-..++|-
T Consensus 2 ~Wtde~~~~L~~lw-~~G~SasqIA~~lg~vsRnAViGk~hRl 43 (162)
T PF07750_consen 2 SWTDERVERLRKLW-AEGLSASQIARQLGGVSRNAVIGKAHRL 43 (162)
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHhCCcchhhhhhhhhcc
Confidence 49999999988765 3477789999999989999999999984
No 28
>KOG2009|consensus
Probab=81.24 E-value=0.81 Score=44.90 Aligned_cols=46 Identities=28% Similarity=0.515 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKA 76 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~ 76 (182)
-.+|+-+|.+.|..++.+||-|++=||+.--.|++.|||..-+.|.
T Consensus 409 ~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE 454 (584)
T KOG2009|consen 409 TDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEE 454 (584)
T ss_pred cCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhh
Confidence 4799999999999999999999999999999999999998776653
No 29
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=78.40 E-value=3.1 Score=27.69 Aligned_cols=34 Identities=18% Similarity=0.410 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q psy8149 38 DIEMLKETVRKFGDELVIISDRIKDRTISQIKSN 71 (182)
Q Consensus 38 EiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~ 71 (182)
|.+.|++|++++|-|-..|-+++-+|+-.|++.-
T Consensus 2 DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i 35 (66)
T PF00191_consen 2 DAELLHAALKGWGTDEDVLIEILCTRSPAQLRAI 35 (66)
T ss_dssp HHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHH
T ss_pred HHHHHHHHccCCCCChhHhhhHHhhhccccccee
Confidence 5679999999999999999999999999998864
No 30
>KOG1194|consensus
Probab=73.32 E-value=4.1 Score=39.59 Aligned_cols=50 Identities=14% Similarity=0.174 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH----hhhhhhh
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL----KKKAFED 79 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l----KrK~~ed 79 (182)
-..+|+-++---+..+|+++|+|..-|+.+||..++.|.+.-+ +|+.||+
T Consensus 368 ~n~~~~T~~~la~v~~I~~~~~~~~pl~wrik~t~cmee~e~l~~~~Rr~mfea 421 (534)
T KOG1194|consen 368 MNRCFDTPAALALIDNIKRKHHMCVPLVWRVKQTKCMEENEILNEEARRQMFEA 421 (534)
T ss_pred hccccCcHHHHHHHHHHHHhccCcchhhhHhcCcchhhHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999998754 6777775
No 31
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=71.55 E-value=5.9 Score=41.19 Aligned_cols=42 Identities=17% Similarity=0.457 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHHHhhhh-HHHHHHHhhhhhHHHHHHHHh
Q psy8149 32 NKWTAEDIEMLKETVRKFGDE-LVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~d-L~kIS~~Ik~RTv~QIKs~lK 73 (182)
+-|+-.|-..|..|..+||++ +.+|+.-|..+|..+|+.-.|
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~ 867 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAK 867 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHH
Confidence 569999999999999999987 999999999999999997764
No 32
>KOG0051|consensus
Probab=71.52 E-value=3.6 Score=40.71 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRT 64 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RT 64 (182)
-.|+||++|.+.|...+..-|.+|..|...|..+-
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr~P 417 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGNDWKEIGKALGRMP 417 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcccHHHHHHHHccCc
Confidence 46899999999999999999999999998887654
No 33
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=70.69 E-value=18 Score=25.50 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHh-------------hhhHHHHHHHhhhh-----hHHHHHHHHh
Q psy8149 33 KWTAEDIEMLKETVRKF-------------GDELVIISDRIKDR-----TISQIKSNLK 73 (182)
Q Consensus 33 KWTdeEiemLr~aV~rF-------------g~dL~kIS~~Ik~R-----Tv~QIKs~lK 73 (182)
+||++..+.|.+.+... ...|+.|.+.+..+ |..|||++.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~ 59 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWK 59 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 46666666666655443 23466666666554 4566776654
No 34
>PLN03162 golden-2 like transcription factor; Provisional
Probab=70.18 E-value=6.7 Score=37.69 Aligned_cols=43 Identities=28% Similarity=0.283 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHHHhhhh---HHHHHHHhh--hhhHHHHHHHHhh
Q psy8149 32 NKWTAEDIEMLKETVRKFGDE---LVIISDRIK--DRTISQIKSNLKK 74 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~d---L~kIS~~Ik--~RTv~QIKs~lKr 74 (182)
=+||++=|++|.+||.+.|-| =.+|-+.|. .=|..+||+||.|
T Consensus 238 LrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQK 285 (526)
T PLN03162 238 VDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQK 285 (526)
T ss_pred ccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHH
Confidence 469999999999999999955 456777654 5588999999854
No 35
>KOG1194|consensus
Probab=67.75 E-value=6.6 Score=38.25 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHH
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIK 69 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIK 69 (182)
--.||++||-.|..|..-||.|..||=..+=.|+.+-|+
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlv 225 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLV 225 (534)
T ss_pred cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHH
Confidence 358999999999999999999999998888777776664
No 36
>PF12153 CAP18_C: LPS binding domain of CAP18 (C terminal); InterPro: IPR022746 This entry represents the cathlecidin antimicrobial C-terminal peptides. The C terminus is cleaved from the cathlecidin precursor, and is approximately 30 amino acids in length with a helical structure. This entry is found in association with PF00666 from PFAM. The C terminus peptides possess antimicrobial activity by virtue of their binding to bacterial lipopolysaccharides [][].; GO: 0042742 defense response to bacterium; PDB: 1LYP_A 2LMF_A 2FBU_H 2FBS_N 2K6O_A 2FCG_F.
Probab=62.75 E-value=15 Score=23.06 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhh
Q psy8149 40 EMLKETVRKFGDELVIISDRIKD 62 (182)
Q Consensus 40 emLr~aV~rFg~dL~kIS~~Ik~ 62 (182)
+.||.+-.++|+.|.+|-+.||.
T Consensus 2 ~~lrk~~eKigeklkkIGQkIKD 24 (28)
T PF12153_consen 2 DFLRKGGEKIGEKLKKIGQKIKD 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999985
No 37
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=61.73 E-value=7.4 Score=26.51 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=19.3
Q ss_pred HHHHHHHhhhhHHHHHH--HhhhhhHHHHHHHH
Q psy8149 42 LKETVRKFGDELVIISD--RIKDRTISQIKSNL 72 (182)
Q Consensus 42 Lr~aV~rFg~dL~kIS~--~Ik~RTv~QIKs~l 72 (182)
|......||+||++|=. -.+.+++.-|-..|
T Consensus 7 l~~~t~efgdDLd~lR~~~dF~~~sl~~Li~aL 39 (47)
T PF14615_consen 7 LQRLTDEFGDDLDELRKAPDFTDKSLPLLIDAL 39 (47)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Confidence 66788899999998732 23444444444333
No 38
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=61.70 E-value=7.8 Score=35.67 Aligned_cols=52 Identities=27% Similarity=0.498 Sum_probs=39.9
Q ss_pred hHHHHHhhhhhhccccCCC-CCCC--CCCCHHHHHHHHHHHHHhhhh--HHHHHHHhhh-h
Q psy8149 9 GTAFNKLADLTLQLHSTPD-SPSG--NKWTAEDIEMLKETVRKFGDE--LVIISDRIKD-R 63 (182)
Q Consensus 9 G~AF~kLgeLTmqLh~~~d-s~~~--~KWTdeEiemLr~aV~rFg~d--L~kIS~~Ik~-R 63 (182)
|-.|.+-|-|-|-..++.. |-+. ..|+++|+.. -+.+||++ +.+|+..|.. |
T Consensus 117 GFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~~---I~~~yGEEr~arrIA~aIv~~R 174 (314)
T COG0275 117 GFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLAR---IFKEYGEERFAKRIARAIVERR 174 (314)
T ss_pred CcccCCCCCcccCcCCCCCCCHHHHHhcCCHHHHHH---HHHHhccHhhHHHHHHHHHHHh
Confidence 5568888889999988655 3222 6788888665 57899998 8999999887 5
No 39
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=59.13 E-value=23 Score=26.75 Aligned_cols=48 Identities=23% Similarity=0.379 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHh----h----hhHHHHHHHhhhh-----hHHHHHHHH---hhhhhhh
Q psy8149 32 NKWTAEDIEMLKETVRKF----G----DELVIISDRIKDR-----TISQIKSNL---KKKAFED 79 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rF----g----~dL~kIS~~Ik~R-----Tv~QIKs~l---KrK~~ed 79 (182)
.-||++|==.|.+++-.| | .|++-+-+.|+.. |..|+...+ |||-...
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~ 68 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNA 68 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Confidence 469987666667777777 6 6888898988877 777877654 4554443
No 40
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=58.16 E-value=20 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHhhhhh
Q psy8149 35 TAEDIEMLKETVRKFGDELVIISDRIKDRT 64 (182)
Q Consensus 35 TdeEiemLr~aV~rFg~dL~kIS~~Ik~RT 64 (182)
.++|+++|..|+.+.-.+|..+.+.+..+.
T Consensus 33 ~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~ 62 (123)
T PF05524_consen 33 IEAEIERLEQALEKAREELEQLAERAESKL 62 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999998866554
No 41
>KOG4771|consensus
Probab=57.09 E-value=21 Score=31.12 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhh
Q psy8149 34 WTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAF 77 (182)
Q Consensus 34 WTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~ 77 (182)
-++.||+-++..+.++|+|+.....-.|--+..|--.+|||...
T Consensus 156 ~s~rehewi~rL~~KhGdD~e~M~~D~KLNs~q~s~~~Lk~l~~ 199 (210)
T KOG4771|consen 156 TSQREHEWIRRLVEKHGDDIEGMYRDRKLNSMQHSVATLKKLCT 199 (210)
T ss_pred hHHHHHHHHHHHHHHhchhHHHHHHhhhhhHHhhhHHHHHHHHH
Confidence 46789999999999999999999998888888888888887653
No 42
>KOG3841|consensus
Probab=55.67 E-value=4.7 Score=38.48 Aligned_cols=57 Identities=18% Similarity=0.381 Sum_probs=40.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHh---hhh-------------HHHHHHHhh-----hhhHHHHHHHH---hhhhhhhcCCCC
Q psy8149 29 PSGNKWTAEDIEMLKETVRKF---GDE-------------LVIISDRIK-----DRTISQIKSNL---KKKAFEDAGLPI 84 (182)
Q Consensus 29 ~~~~KWTdeEiemLr~aV~rF---g~d-------------L~kIS~~Ik-----~RTv~QIKs~l---KrK~~edag~p~ 84 (182)
.++|+|+++=-+.|++||.-| |++ =.-|+.-|| +||..||-+|+ +||...+--..+
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~reiq~kl 153 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQAKL 153 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467999999999999999876 432 134777775 78999999985 455544444444
Q ss_pred C
Q psy8149 85 Q 85 (182)
Q Consensus 85 ~ 85 (182)
+
T Consensus 154 k 154 (455)
T KOG3841|consen 154 K 154 (455)
T ss_pred h
Confidence 4
No 43
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.36 E-value=47 Score=27.35 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=28.8
Q ss_pred hHhhHhhHHHHHhhhhhhccccCCCCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q psy8149 3 DIFLAAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKD 62 (182)
Q Consensus 3 EIF~aAG~AF~kLgeLTmqLh~~~ds~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~ 62 (182)
.-+..-|.+|++||.+- -+-|-.++.+||++++.+|...+.
T Consensus 39 ~d~~efg~~~~~L~~~E-------------------~~~L~~~l~~~~~~~~~~s~~~~~ 79 (185)
T cd07628 39 VDYADLATQFQKLGSLE-------------------SGEITEPFKIFSESLSQFSTSLRV 79 (185)
T ss_pred HHHHHHHHHHHHHHhhC-------------------chhhhHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888764 111888999999888888865554
No 44
>PLN02305 lipoxygenase
Probab=54.23 E-value=11 Score=38.97 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhH
Q psy8149 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTI 65 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv 65 (182)
.|+.++. -++|+.+|+.+|..|+..|..|-.
T Consensus 851 ~w~~D~~--~~~A~~rF~~~L~eIE~~I~~RN~ 881 (918)
T PLN02305 851 HWINDHE--VVKLFNKFSARLEEIEKTINERNK 881 (918)
T ss_pred ccccCHH--HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5887663 688999999999999999999864
No 45
>PLN02264 lipoxygenase
Probab=54.11 E-value=11 Score=38.97 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHH
Q psy8149 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTIS 66 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~ 66 (182)
.||.++. -++|++||+.+|..|+..|..|-..
T Consensus 852 ~w~~D~~--~~~af~rF~~~L~eIe~~I~~RN~~ 883 (919)
T PLN02264 852 IWTGDAE--IVEAFYGFSAEIGRIEKEIEKRNAD 883 (919)
T ss_pred ccccCHH--HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6997754 6789999999999999999998653
No 46
>KOG0050|consensus
Probab=52.51 E-value=16 Score=36.20 Aligned_cols=40 Identities=30% Similarity=0.534 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHH
Q psy8149 31 GNKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKS 70 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs 70 (182)
+|-|+-.|=+.|+.||..|| +.|.+|+...-..|-.|-+.
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~ 47 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKA 47 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHH
Confidence 67899999999999999996 56999999988888887554
No 47
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=52.34 E-value=13 Score=36.88 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTIS 66 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~ 66 (182)
..|+.++. .++|+.+|..+|.+|++.|.+|--.
T Consensus 615 ~~w~~d~~--~~~a~~~F~~~L~~ie~~I~~RN~~ 647 (667)
T PF00305_consen 615 PHWFSDPE--AKAAFERFQEELKEIEEEIDERNKD 647 (667)
T ss_dssp TTSSSSHH--HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHH--HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45877654 4789999999999999999998653
No 48
>KOG3554|consensus
Probab=49.20 E-value=12 Score=36.97 Aligned_cols=27 Identities=22% Similarity=0.672 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISD 58 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~ 58 (182)
.-|+..|..-|.+|+.+||.|.|-|-+
T Consensus 286 EEWSasEanLFEeALeKyGKDFndIrq 312 (693)
T KOG3554|consen 286 EEWSASEANLFEEALEKYGKDFNDIRQ 312 (693)
T ss_pred hhccchhhHHHHHHHHHhcccHHHHHH
Confidence 479999999999999999999988754
No 49
>COG1395 Predicted transcriptional regulator [Transcription]
Probab=49.14 E-value=2.7 Score=38.50 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=60.3
Q ss_pred hHHHHHhhhhhhccccCCCCCCC-CCCCHHHHHHHHHHHHHhhh------hHHHHHHHhhhhhHHHHHHHHhhhhhhhcC
Q psy8149 9 GTAFNKLADLTLQLHSTPDSPSG-NKWTAEDIEMLKETVRKFGD------ELVIISDRIKDRTISQIKSNLKKKAFEDAG 81 (182)
Q Consensus 9 G~AF~kLgeLTmqLh~~~ds~~~-~KWTdeEiemLr~aV~rFg~------dL~kIS~~Ik~RTv~QIKs~lKrK~~edag 81 (182)
|.+|.+|.++-+-.+|..-+|.. -.|.++++.-|...+.++-+ =+++||+.++...+=+||...+||..|+.+
T Consensus 207 ~~~~~~L~~iG~~~~~~~~apfDava~~~~~~~~llt~~~e~~~~~~ra~~~~~is~~~~~~~~li~~~~~~~~~ve~~~ 286 (313)
T COG1395 207 GEVIEKLARIGFKVLPTKQAPFDAVAKDSEDNNLLLTGIEERKDKEKRARLLSKISEVVESESVLIIKEPAVRESVEGVP 286 (313)
T ss_pred HHHHHHHHHhccCccchhhCcHHHhhcccccCceEEeeehhhcchHHHHHHHHHHHHHhCCceEEEeccHHHHhhhcCCc
Confidence 56699999999999998776643 57888887555555555533 389999999999999999999999999887
Q ss_pred CC
Q psy8149 82 LP 83 (182)
Q Consensus 82 ~p 83 (182)
+-
T Consensus 287 i~ 288 (313)
T COG1395 287 IV 288 (313)
T ss_pred cc
Confidence 64
No 50
>KOG0049|consensus
Probab=48.90 E-value=19 Score=36.86 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhh-HHHHHHHhhhhhHHHHHHHHhh----hhhhhcCCCC
Q psy8149 28 SPSGNKWTAEDIEMLKETVRKFGDE-LVIISDRIKDRTISQIKSNLKK----KAFEDAGLPI 84 (182)
Q Consensus 28 s~~~~KWTdeEiemLr~aV~rFg~d-L~kIS~~Ik~RTv~QIKs~lKr----K~~edag~p~ 84 (182)
+---++|+=.|-+.|..+|+.||-- |-||+.-+..||..|.+.-=.| |.|-.+|..-
T Consensus 409 s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl~~~~~~ 470 (939)
T KOG0049|consen 409 SAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRLAAGFCN 470 (939)
T ss_pred hhccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHHHHHhcCCcc
Confidence 3335799999999999999999876 9999999999999887654333 4455555443
No 51
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=47.33 E-value=96 Score=25.70 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHH---h---------------hhhHHHHHHHhhhhhHHHHHHHHhhhhhh----hcCCCCCCCC
Q psy8149 31 GNKWTAEDIEMLKETVRK---F---------------GDELVIISDRIKDRTISQIKSNLKKKAFE----DAGLPIQQQV 88 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~r---F---------------g~dL~kIS~~Ik~RTv~QIKs~lKrK~~e----dag~p~~~~~ 88 (182)
-+-.|++|++.|++.|.. | |+|.-.|+.-++.-....|+--.+=+.|. ..|+|++-+-
T Consensus 58 ~~~Lt~~qi~~l~~~i~~~~~~~iP~w~~nr~kd~~tG~d~h~i~~dL~~~~~~dI~Rl~~I~sYRG~RH~~GLpVRGQR 137 (154)
T PTZ00134 58 AGELTAEEIEKIVEIIANPLQFKIPDWFLNRQRDPKDGKNSHLTSNMLDTKLREDLERLKKIRLHRGLRHHWGLRVRGQH 137 (154)
T ss_pred cccCCHHHHHHHHHHHhccccCCCChhHhhccccccccchhhhhHHHHHHHHHHHHHHHHHhcchheeecccCCccCCcc
Confidence 368999999999999986 4 56666777777766667777777777776 4688888644
No 52
>smart00426 TEA TEA domain.
Probab=45.35 E-value=37 Score=25.07 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHHHh---hhh---H----------HHHHHHhhh-----hhHHHHHHHH
Q psy8149 31 GNKWTAEDIEMLKETVRKF---GDE---L----------VIISDRIKD-----RTISQIKSNL 72 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rF---g~d---L----------~kIS~~Ik~-----RTv~QIKs~l 72 (182)
++.|.++==+-|.+||..+ |.. + .=||+.|.. ||..||-||+
T Consensus 3 ~~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShI 65 (68)
T smart00426 3 EGVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHI 65 (68)
T ss_pred CCcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchh
Confidence 5789976667789998876 333 1 236776764 7888887776
No 53
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=44.08 E-value=25 Score=26.86 Aligned_cols=45 Identities=24% Similarity=0.442 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHHhh----hhHHHHHHHhhhhhHH--HHHHHHhhhh
Q psy8149 32 NKWTAEDIEMLKETVRKFG----DELVIISDRIKDRTIS--QIKSNLKKKA 76 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg----~dL~kIS~~Ik~RTv~--QIKs~lKrK~ 76 (182)
.||+.+=++-|.+++.+|. +|-..++.|=|.+||. .|+-.+|+.-
T Consensus 35 ~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~ 85 (91)
T COG2036 35 ERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLG 85 (91)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhc
Confidence 3999999999999999995 5556667777777753 4665555543
No 54
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=43.13 E-value=47 Score=28.11 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCCCHHHHHHH--------------HHHHHHhhhhHHHHHHHhhhhh
Q psy8149 32 NKWTAEDIEML--------------KETVRKFGDELVIISDRIKDRT 64 (182)
Q Consensus 32 ~KWTdeEiemL--------------r~aV~rFg~dL~kIS~~Ik~RT 64 (182)
.+||.+|=.+| .+|+...|+-|++-+..|.-|=
T Consensus 6 dawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRw 52 (170)
T PRK13923 6 DAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRW 52 (170)
T ss_pred hhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHH
Confidence 58999999888 4566666888888888888876
No 55
>PF00196 GerE: Bacterial regulatory proteins, luxR family; InterPro: IPR000792 This domain is a DNA-binding, helix-turn-helix (HTH) domain of about 65 amino acids, present in transcription regulators of the LuxR/FixJ family of response regulators. The domain is named after Vibrio fischeri luxR, a transcriptional activator for quorum-sensing control of luminescence. LuxR-type HTH domain proteins occur in a variety of organisms. The DNA-binding HTH domain is usually located in the C-terminal region; the N-terminal region often containing an autoinducer-binding domain or a response regulatory domain. Most luxR-type regulators act as transcription activators, but some can be repressors or have a dual role for different sites. LuxR-type HTH regulators control a wide variety of activities in various biological processes. The luxR-type, DNA-binding HTH domain forms a four-helical bundle structure. The HTH motif comprises the second and third helices, known as the scaffold and recognition helix, respectively. The HTH binds DNA in the major groove, where the N-terminal part of the recognition helix makes most of the DNA contacts. The fourth helix is involved in dimerisation of gerE and traR. Signalling events by one of the four activation mechanisms described below lead to multimerisation of the regulator. The regulators bind DNA as multimers [, , ]. LuxR-type HTH proteins can be activated by one of four different mechanisms: 1) Regulators which belong to a two-component sensory transduction system where the protein is activated by its phosphorylation, generally on an aspartate residue, by a transmembrane kinase [, ]. Some proteins that belong to this category are: Rhizobiaceae fixJ (global regulator inducing expression of nitrogen-fixation genes in microaerobiosis) Escherichia coli and Salmonella typhimurium uhpA (activates hexose phosphate transport gene uhpT) E. coli narL and narP (activate nitrate reductase operon) Enterobacteria rcsB (regulation of exopolysaccharide biosynthesis in enteric and plant pathogenesis) Bordetella pertussis bvgA (virulence factor) Bacillus subtilis coma (involved in expression of late-expressing competence genes) 2) Regulators which are activated, or in very rare cases repressed, when bound to N-acyl homoserine lactones, which are used as quorum sensing molecules in a variety of Gram-negative bacteria []: V. fischeri luxR (activates bioluminescence operon) Agrobacterium tumefaciens traR (regulation of Ti plasmid transfer) Erwinia carotovora carR (control of carbapenem antibiotics biosynthesis) E. carotovora expR (virulence factor for soft rot disease; activates plant tissue macerating enzyme genes) Pseudomonas aeruginosa lasR (activates elastase gene lasB) Erwinia chrysanthemi echR and Erwinia stewartii esaR Pseudomonas chlororaphis phzR (positive regulator of phenazine antibiotic production) Pseudomonas aeruginosa rhlR (activates rhlAB operon and lasB gene) 3) Autonomous effector domain regulators, without a regulatory domain, represented by gerE []. B. subtilis gerE (transcription activator and repressor for the regulation of spore formation) 4) Multiple ligand-binding regulators, exemplified by malT []. E. coli malT (activates maltose operon; MalT binds ATP and maltotriose); GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3SZT_A 3CLO_A 1H0M_A 1L3L_A 3C57_B 1ZLK_B 1ZLJ_H 3C3W_B 1RNL_A 1ZG1_A ....
Probab=42.51 E-value=52 Score=21.57 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHH--hhhhhHHHHHHHHhhhh
Q psy8149 34 WTAEDIEMLKETVRKFGDELVIISDR--IKDRTISQIKSNLKKKA 76 (182)
Q Consensus 34 WTdeEiemLr~aV~rFg~dL~kIS~~--Ik~RTv~QIKs~lKrK~ 76 (182)
-|+.|++.|+.... |.....|++. |..+||...+..+.+|+
T Consensus 4 LT~~E~~vl~~l~~--G~~~~eIA~~l~is~~tV~~~~~~i~~Kl 46 (58)
T PF00196_consen 4 LTERELEVLRLLAQ--GMSNKEIAEELGISEKTVKSHRRRIMKKL 46 (58)
T ss_dssp S-HHHHHHHHHHHT--TS-HHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHh--cCCcchhHHhcCcchhhHHHHHHHHHHHh
Confidence 46777777765544 6677778776 46788888888888885
No 56
>PF04883 HK97-gp10_like: Bacteriophage HK97-gp10, putative tail-component; InterPro: IPR010064 This entry represents a family of highly divergent putative prophage and bacteriophage proteins of unknown function. The family includes Gp10 from phages HK022 and HK97.
Probab=41.11 E-value=65 Score=21.43 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhh
Q psy8149 41 MLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAF 77 (182)
Q Consensus 41 mLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~ 77 (182)
.|...|.++++++.++..-+-......|+..+|..+=
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~l~~~a~~~~~~~k~~~p 38 (78)
T PF04883_consen 2 ELERQLEKLQDKAEKAAKKALREAAEEIEDEAKQNAP 38 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4677788888888888777777777777777776654
No 57
>cd04780 HTH_MerR-like_sg5 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 5), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=40.94 E-value=1.1e+02 Score=22.65 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=37.0
Q ss_pred ccCCC-CCCCCCCCHHHHHHHHHH--HHH-hhhhHHHHHHHhhh---hhHHHHHHHHhhhhh
Q psy8149 23 HSTPD-SPSGNKWTAEDIEMLKET--VRK-FGDELVIISDRIKD---RTISQIKSNLKKKAF 77 (182)
Q Consensus 23 h~~~d-s~~~~KWTdeEiemLr~a--V~r-Fg~dL~kIS~~Ik~---RTv~QIKs~lKrK~~ 77 (182)
+|... ......|++++++.|+.. +++ +|-.|..|.+.+.. .|..+-+..+.++-|
T Consensus 27 ~p~~r~~~g~r~Y~~~dv~~l~~I~~L~~~~G~~l~~I~~~l~~~~~~~~~~~~~~~~~~~~ 88 (95)
T cd04780 27 PEGRRLAPNQAEYSEAHVERLRLIRALQQEGGLPISQIKEVLDAIADASLPSTLLALAVQRF 88 (95)
T ss_pred CCCcCCCCCCeecCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 45443 333478999999999885 555 89899888887754 455555555554443
No 58
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=39.13 E-value=33 Score=23.69 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHhh
Q psy8149 40 EMLKETVRKFGDELVIISDRIK 61 (182)
Q Consensus 40 emLr~aV~rFg~dL~kIS~~Ik 61 (182)
+.|++||.+.|.+-..|..+++
T Consensus 35 ~~L~~AV~~vG~~~~~V~~~L~ 56 (57)
T PF12244_consen 35 EQLREAVRAVGNSRAAVRAYLG 56 (57)
T ss_pred HHHHHHHHHHCcCHHHHHHHHc
Confidence 6799999999999988888765
No 59
>PRK12346 transaldolase A; Provisional
Probab=37.88 E-value=39 Score=30.79 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhh
Q psy8149 38 DIEMLKETVRKFGDELVIISDRIKDR 63 (182)
Q Consensus 38 EiemLr~aV~rFg~dL~kIS~~Ik~R 63 (182)
-.+.|-++++.|..|+.++-..|++|
T Consensus 290 A~ekl~eGIr~F~~d~~~Le~~i~~~ 315 (316)
T PRK12346 290 AVEKLSEGIRLFAVDQRKLEDLLAAK 315 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57889999999999999999999876
No 60
>PLN02337 lipoxygenase
Probab=36.86 E-value=35 Score=35.30 Aligned_cols=33 Identities=33% Similarity=0.612 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTIS 66 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~ 66 (182)
..|+.++ .-++|+.||+.+|..|+..|+.|-..
T Consensus 793 ~~w~~d~--~~~~a~~~F~~~L~eIe~~I~~RN~~ 825 (866)
T PLN02337 793 PEWTSDA--EPLEAFKRFGERLVEIENRIVDMNKD 825 (866)
T ss_pred cccccCH--HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4688664 34679999999999999999988654
No 61
>TIGR01725 phge_HK97_gp10 phage protein, HK97 gp10 family. This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion.
Probab=36.71 E-value=96 Score=22.76 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhhhHHH-HHHHhhhhhHHHHHHHHhhhhhhhcC
Q psy8149 39 IEMLKETVRKFGDELVI-ISDRIKDRTISQIKSNLKKKAFEDAG 81 (182)
Q Consensus 39 iemLr~aV~rFg~dL~k-IS~~Ik~RTv~QIKs~lKrK~~edag 81 (182)
++.|...|.+++.+.++ +..-+-......|+..+|.++..+.|
T Consensus 4 l~~l~~~l~~l~~~~~~~~~~~al~~~a~~~~~~~k~~~p~~~g 47 (119)
T TIGR01725 4 LDELLQKLEKLGKKVDKEKVRKALKAGANVIRAKLKSNAPVSKG 47 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC
Confidence 56788888888888887 77766677777799999988755544
No 62
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=36.01 E-value=52 Score=24.95 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIIS 57 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS 57 (182)
..|+++|++.|...+.++-+.++++.
T Consensus 116 ~~l~~ee~~~l~~~l~~l~~~l~~~~ 141 (144)
T PRK03573 116 HGISAEEIEQLITLIAKLEKNIIELQ 141 (144)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999988777654
No 63
>cd01105 HTH_GlnR-like Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=34.86 E-value=1.1e+02 Score=22.00 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=37.6
Q ss_pred ccCCCCC-CCCCCCHHHHHHHHHH--HHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhhhhcC
Q psy8149 23 HSTPDSP-SGNKWTAEDIEMLKET--VRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAG 81 (182)
Q Consensus 23 h~~~ds~-~~~KWTdeEiemLr~a--V~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~edag 81 (182)
.|..+.. ..-.|++++|..|+.. ++..|-.|..|.+.+..+. ..+-+.|.|...|
T Consensus 28 ~p~r~~~~g~R~Ys~~dv~~l~~I~~Lr~~G~sl~~i~~~l~~~~----~~~~~~~~~~~~~ 85 (88)
T cd01105 28 KSIRSDGGGQRKYSLADVDRLLVIKELLDEGFTLAAAVEKLRRRR----VQAEVRRRLMKDG 85 (88)
T ss_pred CCCccCCCCceecCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcc----CHHHHHHHHHHHh
Confidence 4544433 3478999999988764 5667888999999998665 4445555555544
No 64
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=34.51 E-value=47 Score=30.93 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhh
Q psy8149 39 IEMLKETVRKFGDELVIISDRIKDRT 64 (182)
Q Consensus 39 iemLr~aV~rFg~dL~kIS~~Ik~RT 64 (182)
.+.|-+++++|..|+.++-..|++|.
T Consensus 298 ~ekl~egi~~F~~d~~~L~~~i~~~~ 323 (391)
T PRK12309 298 SEKLDEGIKGFSKALETLEKLLAHRL 323 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999877
No 65
>KOG4282|consensus
Probab=33.69 E-value=90 Score=27.56 Aligned_cols=42 Identities=19% Similarity=0.356 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHh----------hhhHHHHHHHhh----hhhHHHHHHHHh
Q psy8149 32 NKWTAEDIEMLKETVRKF----------GDELVIISDRIK----DRTISQIKSNLK 73 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rF----------g~dL~kIS~~Ik----~RTv~QIKs~lK 73 (182)
.+|+++|...|.++-... +..|..||..+. .||-.|+|..++
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~ 110 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIE 110 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 689999999998876544 567888888443 689999987654
No 66
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.14 E-value=1.5e+02 Score=21.23 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=29.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHH--HhhhhHHHHHHHhhhhhHH
Q psy8149 24 STPDSPSGNKWTAEDIEMLKETVR--KFGDELVIISDRIKDRTIS 66 (182)
Q Consensus 24 ~~~ds~~~~KWTdeEiemLr~aV~--rFg~dL~kIS~~Ik~RTv~ 66 (182)
|..+....-.|+++||.+|+.... ++|-.+..|...+......
T Consensus 28 ~~~~~~g~r~y~~~dv~~l~~i~~l~~~g~~~~~i~~~l~~~~~~ 72 (100)
T cd00592 28 PERSENGYRLYSEEDLERLRLIRRLRELGLSLKEIRELLDARDEE 72 (100)
T ss_pred CCcCCCCCcccCHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccc
Confidence 333333446699999999887654 4677788888777655443
No 67
>PF14164 YqzH: YqzH-like protein
Probab=32.61 E-value=41 Score=24.52 Aligned_cols=34 Identities=18% Similarity=0.412 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhh----------HHHHHHHhhhhhHHHHHHHHh
Q psy8149 40 EMLKETVRKFGDE----------LVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 40 emLr~aV~rFg~d----------L~kIS~~Ik~RTv~QIKs~lK 73 (182)
-|++.+++.||.| |..+.++|.+|--+|-...+.
T Consensus 8 Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i~~~~~~~~~~Dl~ 51 (64)
T PF14164_consen 8 KMIINCLRQYGYDVECMPLSDEEWEELCKHIQERKNEEPDEDLH 51 (64)
T ss_pred HHHHHHHHHhCCcccCCCCCHHHHHHHHHHHHHHHhcCCCchHH
Confidence 4788899999654 888888888877666544443
No 68
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=32.04 E-value=42 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhh
Q psy8149 37 EDIEMLKETVRKFGDELVIISDRIK 61 (182)
Q Consensus 37 eEiemLr~aV~rFg~dL~kIS~~Ik 61 (182)
.||+.|+..+.+ +++ ++|..++
T Consensus 9 ~ei~~L~~el~~--~r~-~vS~a~~ 30 (68)
T PF00631_consen 9 REIEQLRQELER--ERI-KVSKACK 30 (68)
T ss_dssp HHHHHHHHHHTS-------HHHHHH
T ss_pred HHHHHHHHHHcc--cce-eHHHHHH
Confidence 577888888877 666 7777765
No 69
>COG3909 Cytochrome c556 [Energy production and conversion]
Probab=31.81 E-value=2.7e+02 Score=23.44 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=48.0
Q ss_pred hhHhhHhhHHHHHhhhhhhccccCCCCCCC-C-----CCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q psy8149 2 GDIFLAAGTAFNKLADLTLQLHSTPDSPSG-N-----KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL 72 (182)
Q Consensus 2 ~EIF~aAG~AF~kLgeLTmqLh~~~ds~~~-~-----KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l 72 (182)
+|+|.++-+.|..+.+---.|.|.. |..| + -| ++-+.|+..-.+||.|.++|-.-..+ +..-||..+
T Consensus 57 ae~vka~~atl~~~ak~~~~~fp~g-se~g~t~A~p~IW--e~~~~FKA~~~kf~~d~~~l~a~~p~-d~dgv~~a~ 129 (147)
T COG3909 57 AEKVKAALATLSENAKKPPTLFPAG-SETGETRALPAIW--EDMADFKAKAAKFGADVEKLLAAAPT-DQDGVKAAY 129 (147)
T ss_pred HHHHHHHHHHHHHhhccCCCcCCCC-CccCcccccHHHH--HhHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 5888888888887777654444432 2222 1 25 46788999999999999999988777 666666554
No 70
>PF07176 DUF1400: Alpha/beta hydrolase of unknown function (DUF1400); InterPro: IPR010802 This domain is specific to cyanobacterial proteins, its function and the function of the proteins it is associated with, are uncharacterised.
Probab=31.44 E-value=64 Score=25.30 Aligned_cols=68 Identities=19% Similarity=0.335 Sum_probs=43.6
Q ss_pred HHHHhhhhhhccccCCCCCCCCCC-CHHHHHHHHHHHH-----------H-----hhhh-HHHHHHHhhhhh--H-HH-H
Q psy8149 11 AFNKLADLTLQLHSTPDSPSGNKW-TAEDIEMLKETVR-----------K-----FGDE-LVIISDRIKDRT--I-SQ-I 68 (182)
Q Consensus 11 AF~kLgeLTmqLh~~~ds~~~~KW-TdeEiemLr~aV~-----------r-----Fg~d-L~kIS~~Ik~RT--v-~Q-I 68 (182)
.|.+=|+.+-+|.+--. + +.++.+.||.++. + +|+. |++|+++|..+. . .+ |
T Consensus 23 ~fa~tG~~~~~L~~~~~------ll~~~~~~~lr~~L~~~~~~~~~~~~~lL~S~~G~~lL~~lg~vi~~~~~~~g~~AL 96 (127)
T PF07176_consen 23 TFAETGEISPELAFYLN------LLSPQQRQQLRELLNTPIPIDPVFLSQLLNSPIGERLLDQLGKVIRTPSGSNGQQAL 96 (127)
T ss_pred HHHHcCCCCHHHHHHHH------hcCHhhHHHHHHHHcCCCCCCHHHHHHHhCChHHHHHHHHHHHHhcCCCCcccHHHH
Confidence 35555555544443222 1 4566677776653 3 3888 899999996553 2 22 7
Q ss_pred HHHHhhhhhhhcCCCC
Q psy8149 69 KSNLKKKAFEDAGLPI 84 (182)
Q Consensus 69 Ks~lKrK~~edag~p~ 84 (182)
|+++-.-+..+.|+.+
T Consensus 97 r~Ali~aa~~~~glt~ 112 (127)
T PF07176_consen 97 RSALILAASDPEGLTL 112 (127)
T ss_pred HHHHHHHhhCCCCccH
Confidence 8888888888888765
No 71
>PRK12897 methionine aminopeptidase; Reviewed
Probab=30.19 E-value=1.4e+02 Score=24.97 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHhh-hhhHHHHHHHHhhhhhh
Q psy8149 35 TAEDIEMLKETVRKFGDELVIISDRIK-DRTISQIKSNLKKKAFE 78 (182)
Q Consensus 35 TdeEiemLr~aV~rFg~dL~kIS~~Ik-~RTv~QIKs~lKrK~~e 78 (182)
|++||+++|+|.+-=..=+..+.+.|+ ..|..+|...+...+++
T Consensus 6 s~~EI~~~r~A~~i~~~~~~~~~~~~~~G~tE~el~~~~~~~~~~ 50 (248)
T PRK12897 6 TKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEK 50 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHH
Confidence 589999999999887777887777775 66999998888555544
No 72
>PF07508 Recombinase: Recombinase; InterPro: IPR011109 This domain is usually found associated with IPR006119 from INTERPRO in putative integrases/recombinases of mobile genetic elements of diverse bacteria and phages.
Probab=28.71 E-value=1.1e+02 Score=21.41 Aligned_cols=43 Identities=21% Similarity=0.459 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHh--hhhHHHHHHHhhhh----------hHHHHHHHHhhhhhh
Q psy8149 36 AEDIEMLKETVRKF--GDELVIISDRIKDR----------TISQIKSNLKKKAFE 78 (182)
Q Consensus 36 deEiemLr~aV~rF--g~dL~kIS~~Ik~R----------Tv~QIKs~lKrK~~e 78 (182)
++|.+.++....+| |.-+..|+..+.++ +.+.|+.-|+..+|-
T Consensus 1 peea~vVr~if~~~~~g~s~~~I~~~ln~~gi~~~~~~~W~~~~v~~iL~np~y~ 55 (102)
T PF07508_consen 1 PEEAEVVREIFELYLEGYSLRQIARELNEKGIPTPRGKKWSKSTVRRILRNPAYA 55 (102)
T ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCccccCCcccHHHHHHHHhhhhcc
Confidence 36788899999999 55588888887665 578888888888884
No 73
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2.2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A ....
Probab=28.37 E-value=66 Score=28.04 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHh
Q psy8149 37 EDIEMLKETVRKFGDELVIISDRI 60 (182)
Q Consensus 37 eEiemLr~aV~rFg~dL~kIS~~I 60 (182)
+|++.+.+.+.++|-|++.++.-.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~l 268 (287)
T PF00923_consen 245 EEAEAVLEALFELGIDLDPVAEEL 268 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHhCCChhHHHHHH
Confidence 344445555555555555544443
No 74
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=28.10 E-value=1.9e+02 Score=21.08 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHH--HHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149 32 NKWTAEDIEMLK--ETVRKFGDELVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 32 ~KWTdeEiemLr--~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK 73 (182)
..|+++||++|+ ..++.+|=.|..|-..+.... ..++..++
T Consensus 37 R~y~~~di~~l~~i~~lr~~g~~l~~i~~~~~~~~-~~~~~~l~ 79 (103)
T cd01106 37 RLYTEEDLERLQQILFLKELGFSLKEIKELLKDPS-EDLLEALR 79 (103)
T ss_pred eeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCc-HHHHHHHH
Confidence 569999999985 456777888888888887665 33333333
No 75
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.10 E-value=45 Score=24.60 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHh-hhhHHHHH
Q psy8149 37 EDIEMLKETVRKF-GDELVIIS 57 (182)
Q Consensus 37 eEiemLr~aV~rF-g~dL~kIS 57 (182)
.+++.|+..++.| |+||+.++
T Consensus 26 ~~~~~L~~~~R~~~GedL~~Ls 47 (100)
T PF01486_consen 26 KENESLQKELRHLMGEDLESLS 47 (100)
T ss_pred HHHHHHHHHHhccccccccccc
Confidence 4667777777777 77766554
No 76
>KOG0018|consensus
Probab=27.95 E-value=1.4e+02 Score=32.09 Aligned_cols=42 Identities=29% Similarity=0.606 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK 73 (182)
+|+||-+++++.|+.-=.||=+.|..|.. +.+-+++|.+.++
T Consensus 645 s~~~wdek~~~~L~~~k~rl~eel~ei~~--~~~e~~~v~~~i~ 686 (1141)
T KOG0018|consen 645 SGAKWDEKEVDQLKEKKERLLEELKEIQK--RRKEVSSVESKIH 686 (1141)
T ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHH
Confidence 44789999999999999999999999988 5556666666554
No 77
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=27.52 E-value=62 Score=29.30 Aligned_cols=63 Identities=24% Similarity=0.454 Sum_probs=38.9
Q ss_pred hHHHHHhhhhhhccccCCCCCCC---CCCCHHHHHHHHHHHHHhhhh--HHHHHHHhh-hh------hHHHHHHHHhh
Q psy8149 9 GTAFNKLADLTLQLHSTPDSPSG---NKWTAEDIEMLKETVRKFGDE--LVIISDRIK-DR------TISQIKSNLKK 74 (182)
Q Consensus 9 G~AF~kLgeLTmqLh~~~ds~~~---~KWTdeEiemLr~aV~rFg~d--L~kIS~~Ik-~R------Tv~QIKs~lKr 74 (182)
|-.|.+=|-|-|-.-|...-++. ..|+++| |...+.+||++ ..+|+..|- .| |..++..-+++
T Consensus 113 GFSf~~dgpLDMRMd~~~~~tA~~~ln~~~e~~---L~~i~~~yGEe~~a~~IA~~Iv~~R~~~~i~tt~~L~~ii~~ 187 (305)
T TIGR00006 113 GFSFKHDGPLDMRMDQSQKLSAAEILNTYSEED---LERILKKYGEEKFSKRIARAIVERRKKKPIQTTKELAELISK 187 (305)
T ss_pred CCccCCCCCcccccCCCCCCCHHHHHhhCCHHH---HHHHHHHhcCcchHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 33455566677766554332221 4566665 57788999988 888998774 45 55555555544
No 78
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=27.08 E-value=40 Score=30.85 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHH----HHHhhh--hHHHHHHHhhhhhHHHHHHHHhhhhhhhcC
Q psy8149 32 NKWTAEDIEMLKET----VRKFGD--ELVIISDRIKDRTISQIKSNLKKKAFEDAG 81 (182)
Q Consensus 32 ~KWTdeEiemLr~a----V~rFg~--dL~kIS~~Ik~RTv~QIKs~lKrK~~edag 81 (182)
-+||++|+.+|+.. +.+|.+ .+....--|+...-..|+.+.+||.|+..-
T Consensus 66 D~wt~~~l~~m~~gGN~~a~~~~e~~~~~~~~~~~k~~yd~~v~~~y~~~ky~~~~ 121 (319)
T COG5347 66 DNWTEEELRRMEVGGNSNANRFYEKNLLDQLLLPIKAKYDSSVAKKYIRKKYELKK 121 (319)
T ss_pred ccCCHHHHHHHHHhcchhhhhHhccCCCcccccccccccCHHHHHHHHHHHHHhhh
Confidence 38999999999864 566632 233223456677778888888888887543
No 79
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=27.08 E-value=2.5e+02 Score=20.47 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=38.5
Q ss_pred ccCCCCCCC-CCCCHHHHHHHHH--HHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149 23 HSTPDSPSG-NKWTAEDIEMLKE--TVRKFGDELVIISDRIKDRTISQIKSNLKKKA 76 (182)
Q Consensus 23 h~~~ds~~~-~KWTdeEiemLr~--aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~ 76 (182)
.|...+..| -.++++++..|+. .++.+|=-|..|-+.+...+..+.+..++++.
T Consensus 27 ~p~~~~~~gyR~Y~~~~~~~l~~I~~lr~~G~~l~eI~~~l~~~~~~~~~~~l~~~~ 83 (97)
T cd04782 27 KPEIVKENGYRYYTLEQFEQLDIILLLKELGISLKEIKDYLDNRNPDELIELLKKQE 83 (97)
T ss_pred CCCccCCCCCccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 465433333 6899999998764 45667888999999888887777666666553
No 80
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=27.05 E-value=58 Score=32.07 Aligned_cols=23 Identities=26% Similarity=0.694 Sum_probs=21.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHh
Q psy8149 27 DSPSGNKWTAEDIEMLKETVRKF 49 (182)
Q Consensus 27 ds~~~~KWTdeEiemLr~aV~rF 49 (182)
|.|-.|+|.+||+++....+++|
T Consensus 299 Di~VtG~WseEE~~~v~~~l~~y 321 (519)
T COG1549 299 DIPVTGHWSEEEKEFVAELLKSY 321 (519)
T ss_pred CccccccccHHHHHHHHHHHHHH
Confidence 57778899999999999999999
No 81
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=26.81 E-value=55 Score=31.09 Aligned_cols=24 Identities=29% Similarity=0.672 Sum_probs=21.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhh
Q psy8149 28 SPSGNKWTAEDIEMLKETVRKFGD 51 (182)
Q Consensus 28 s~~~~KWTdeEiemLr~aV~rFg~ 51 (182)
-|.|..||.+|...+.+...|||-
T Consensus 169 NP~Grvwt~eeL~~i~elc~kh~v 192 (388)
T COG1168 169 NPTGRVWTKEELRKIAELCLRHGV 192 (388)
T ss_pred CCCCccccHHHHHHHHHHHHHcCC
Confidence 477999999999999999999863
No 82
>PRK05269 transaldolase B; Provisional
Probab=26.77 E-value=79 Score=28.67 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhh
Q psy8149 38 DIEMLKETVRKFGDELVIISDRIKDRT 64 (182)
Q Consensus 38 EiemLr~aV~rFg~dL~kIS~~Ik~RT 64 (182)
-.+.|.++|+.|.+|..++-..|++|.
T Consensus 291 a~ekl~egi~~F~~~~~~L~~~i~~~~ 317 (318)
T PRK05269 291 ATEKLAEGIRKFAKDQEKLEKLIAAKL 317 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999998763
No 83
>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed
Probab=26.71 E-value=1.8e+02 Score=23.97 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=42.5
Q ss_pred hccccCCCCCCCCCCCHHHHHHHHHHHHH-h-----------------hhhHHHHHHHhhhhhHHHHHHHHhhhhhh---
Q psy8149 20 LQLHSTPDSPSGNKWTAEDIEMLKETVRK-F-----------------GDELVIISDRIKDRTISQIKSNLKKKAFE--- 78 (182)
Q Consensus 20 mqLh~~~ds~~~~KWTdeEiemLr~aV~r-F-----------------g~dL~kIS~~Ik~RTv~QIKs~lKrK~~e--- 78 (182)
+.++|..- -+.+|+++|+.|...|.. | |.+.-.|..-++.-....|+.-.+=+.|.
T Consensus 45 lgi~~~~~---~~~Lt~~qi~~l~~~i~~~~~~~iP~w~~Nr~~d~~tg~~~~~ie~dLr~~~~~~I~rl~~I~syRG~R 121 (149)
T PRK04053 45 LGLDPNAK---LGYLSDEEIEKIEEALEDPAEEGIPSWMLNRRKDYETGEDLHLIGSDLILTVREDINRMKKIRSYRGIR 121 (149)
T ss_pred cCcCCCCc---cCcCCHHHHHHHHHHHHhhccccCchhhhccccccccCccceEehHHHHHHHHHHHHHHHHhcceeeec
Confidence 34555433 468999999999999964 1 33344455555555556666666556665
Q ss_pred -hcCCCCCCCC
Q psy8149 79 -DAGLPIQQQV 88 (182)
Q Consensus 79 -dag~p~~~~~ 88 (182)
..|+|++-+-
T Consensus 122 H~~GLPVRGQR 132 (149)
T PRK04053 122 HELGLKVRGQR 132 (149)
T ss_pred ccCCCCCCCCc
Confidence 3688988644
No 84
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=26.69 E-value=1.5e+02 Score=21.26 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhhh
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFE 78 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~e 78 (182)
.++.....+|+..|..-|..+-..||.=+-...|..++.|+-+
T Consensus 16 ~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~e 58 (75)
T cd02684 16 KDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQ 58 (75)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3556678889999988888888888877888888888888743
No 85
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=26.45 E-value=60 Score=23.05 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.4
Q ss_pred HHHHHHhhhhhHHHHHHHH
Q psy8149 54 VIISDRIKDRTISQIKSNL 72 (182)
Q Consensus 54 ~kIS~~Ik~RTv~QIKs~l 72 (182)
..|+..|+.+|+.+||..+
T Consensus 37 ~~iA~~i~gks~eeir~~f 55 (78)
T PF01466_consen 37 KYIANMIKGKSPEEIRKYF 55 (78)
T ss_dssp HHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHc
Confidence 4678999999999999765
No 86
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=26.42 E-value=67 Score=22.95 Aligned_cols=34 Identities=18% Similarity=0.026 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 41 MLKETVRKFGDELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 41 mLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
|+.+.++.|-.||.++-..++..+..+-...+|-
T Consensus 1 ~~~e~~~~f~k~~~r~lk~~~KPd~~Ef~~iak~ 34 (61)
T TIGR00327 1 KLIEAPVEFIKEGTRVLAVCKKPDLEEYLKVAKV 34 (61)
T ss_pred CccchHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3567789999999999999999999988877764
No 87
>smart00076 IFabd Interferon alpha, beta and delta. Interferons produce antiviral and antiproliferative responses in cells. They are classified into five groups, all of them related but gamma-interferon.
Probab=25.87 E-value=2.5e+02 Score=22.01 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=28.3
Q ss_pred hccccCCCCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHH
Q psy8149 20 LQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISD 58 (182)
Q Consensus 20 mqLh~~~ds~~~~KWTdeEiemLr~aV~rFg~dL~kIS~ 58 (182)
+.|-....|++ -|.+.-++.|+..|.+--++|...-.
T Consensus 31 f~lF~~~~ssa--~W~~t~le~~l~~L~~Ql~~Le~Cl~ 67 (117)
T smart00076 31 FNIFSSPSSSA--AWNETLLESLLNELHQQLNHLEACLK 67 (117)
T ss_pred HHHHcCCCCcc--cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444544 69999999999999999999987654
No 88
>cd04774 HTH_YfmP Helix-Turn-Helix DNA binding domain of the YfmP transcription regulator. Helix-turn-helix (HTH) transcription regulator, YfmP, and related proteins; N-terminal domain. YfmP regulates the multidrug efflux protein, YfmO, and indirectly regulates the expression of the Bacillus subtilis copZA operon encoding a metallochaperone, CopZ, and a CPx-type ATPase efflux protein, CopA. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=25.77 E-value=2.4e+02 Score=20.82 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHH--HHHH-hhhhHHHHHHHhhh
Q psy8149 32 NKWTAEDIEMLKE--TVRK-FGDELVIISDRIKD 62 (182)
Q Consensus 32 ~KWTdeEiemLr~--aV~r-Fg~dL~kIS~~Ik~ 62 (182)
..+++++++.|+. .++. +|=.+..|...+..
T Consensus 36 R~Y~~~dv~~l~~I~~L~~~~G~~l~ei~~~l~~ 69 (96)
T cd04774 36 RLYSEEDLKRLERILRLREVLGFSLQEVTHFLER 69 (96)
T ss_pred EEECHHHHHHHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 5899999999987 6677 88889888888764
No 89
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=25.40 E-value=1.6e+02 Score=27.68 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=37.4
Q ss_pred hhHHHHHhhhhhhccccCCCCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHh
Q psy8149 8 AGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60 (182)
Q Consensus 8 AG~AF~kLgeLTmqLh~~~ds~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~I 60 (182)
.-..|.+|-.|--..+....-.+=.+|++++...|-.+|...+++|.+|...|
T Consensus 320 id~~f~~v~~lL~~~~~~~G~~~y~~l~~~dr~~L~~~v~~LaE~Ls~l~~~l 372 (375)
T PRK10378 320 VDANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITALAEDLAQLRGVL 372 (375)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcchhhcCHHHHHHHHHHHHHHHhHHHHhhhhh
Confidence 34556666665444332111333369999999999999999999999987766
No 90
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=25.13 E-value=73 Score=28.56 Aligned_cols=60 Identities=22% Similarity=0.400 Sum_probs=35.0
Q ss_pred HHHHhhhhhhccccCCCCCCC---CCCCHHHHHHHHHHHHHhhhh--HHHHHHHhh-hh------hHHHHHHHHh
Q psy8149 11 AFNKLADLTLQLHSTPDSPSG---NKWTAEDIEMLKETVRKFGDE--LVIISDRIK-DR------TISQIKSNLK 73 (182)
Q Consensus 11 AF~kLgeLTmqLh~~~ds~~~---~KWTdeEiemLr~aV~rFg~d--L~kIS~~Ik-~R------Tv~QIKs~lK 73 (182)
.|.+=|.|-|-.-|...-++. ..|++ +.|...+.+||+. ..+|+..|- .| |..++..-++
T Consensus 113 Sf~~~gpLDMRmd~~~~~sA~~~ln~~~~---~~L~~i~~~yGee~~a~~iA~~Iv~~R~~~~~~tt~~L~~~i~ 184 (296)
T PRK00050 113 SFRKDGPLDMRMDQSQGLTAAEVVNTYSE---EELARIFKEYGEERFARRIARAIVEARPKKPITTTGELAEIIK 184 (296)
T ss_pred ccCCCCCCcCCcCCCCCCCHHHHHhhCCH---HHHHHHHHHhcCcchHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 344555566665554331111 33444 4568889999998 889998774 45 4455444443
No 91
>COG0146 HyuB N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.85 E-value=1.3e+02 Score=30.03 Aligned_cols=38 Identities=8% Similarity=0.216 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhh-HHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149 39 IEMLKETVRKFGDE-LVIISDRIKDRTISQIKSNLKKKA 76 (182)
Q Consensus 39 iemLr~aV~rFg~d-L~kIS~~Ik~RTv~QIKs~lKrK~ 76 (182)
++++++.+.+||.| |.+-..++.+.....+|..+++=.
T Consensus 194 ~~~v~~li~~yG~~~v~~~m~~~~~~ae~~~r~~I~~l~ 232 (563)
T COG0146 194 RRRVRELIDEYGLDTVEEAMKEVIEYAERAVRAVIRKLP 232 (563)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 67899999999976 999999999999999999988743
No 92
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=24.70 E-value=1.3e+02 Score=29.55 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=24.1
Q ss_pred hhhhHHHHHHHhhhhhHHHHHHHHhhh-hhhhcC
Q psy8149 49 FGDELVIISDRIKDRTISQIKSNLKKK-AFEDAG 81 (182)
Q Consensus 49 Fg~dL~kIS~~Ik~RTv~QIKs~lKrK-~~edag 81 (182)
+.+||++|+++|.+ -..+++..++++ -|.|.|
T Consensus 408 ~a~~lE~IgDiie~-l~~~~~kk~~~~~~fse~~ 440 (533)
T COG1283 408 AAINLEHIGDIIER-LLELADKKIANGRAFSEDG 440 (533)
T ss_pred HHHhHHHHHHHHHH-HHHHHHHHHhcCCCCCHHH
Confidence 36789999999998 888887776654 355555
No 93
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=24.29 E-value=82 Score=29.33 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHHHh----hhhHHHHHHHhhhhhHH
Q psy8149 31 GNKWTAEDIEMLKETVRKF----GDELVIISDRIKDRTIS 66 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rF----g~dL~kIS~~Ik~RTv~ 66 (182)
..|-+-+=.++|..|...| |+||.--|.|-+.|||.
T Consensus 372 K~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTId 411 (414)
T PF15511_consen 372 KMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTID 411 (414)
T ss_dssp -S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 5688889999999999999 99999999999888874
No 94
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=24.12 E-value=1e+02 Score=23.44 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHH
Q psy8149 37 EDIEMLKETVRKFGDELVIISDRIKDRTISQI 68 (182)
Q Consensus 37 eEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QI 68 (182)
.+|+.|++-..-+..+-..|...|+.|-+.-+
T Consensus 22 ~~V~~l~~~~~i~~~q~~~i~~~v~~rv~~~l 53 (116)
T PF10552_consen 22 NRVDDLEENMPIDPGQQKEIQKAVKSRVYELL 53 (116)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666777777777766665543
No 95
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=23.63 E-value=97 Score=28.30 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhh
Q psy8149 38 DIEMLKETVRKFGDELVIISDRIKDR 63 (182)
Q Consensus 38 EiemLr~aV~rFg~dL~kIS~~Ik~R 63 (182)
-.+.|.++++.|..|..++-..|++|
T Consensus 291 a~ekl~~gir~F~~d~~~Le~~i~~~ 316 (317)
T TIGR00874 291 ATEKLAEGIRKFAADQEKLEKLLEEK 316 (317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46889999999999999999999876
No 96
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.45 E-value=3.1e+02 Score=20.30 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHH--HHHHhhhhHHHHHHHhhh
Q psy8149 32 NKWTAEDIEMLKE--TVRKFGDELVIISDRIKD 62 (182)
Q Consensus 32 ~KWTdeEiemLr~--aV~rFg~dL~kIS~~Ik~ 62 (182)
-.|+++++++|+. .++.+|=-|..|.+.+..
T Consensus 37 R~Y~~~~l~~l~~I~~lr~~G~sL~eI~~~l~~ 69 (113)
T cd01109 37 RDFTEEDLEWLEFIKCLRNTGMSIKDIKEYAEL 69 (113)
T ss_pred ccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5799999999863 455678888888887754
No 97
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=23.43 E-value=1.3e+02 Score=18.96 Aligned_cols=24 Identities=4% Similarity=0.318 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhh
Q psy8149 38 DIEMLKETVRKFGDELVIISDRIK 61 (182)
Q Consensus 38 EiemLr~aV~rFg~dL~kIS~~Ik 61 (182)
|-+.+++++.+++-+..+.++.++
T Consensus 6 E~~~i~~aL~~~~gn~~~aA~~Lg 29 (42)
T PF02954_consen 6 EKQLIRQALERCGGNVSKAARLLG 29 (42)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHC
Confidence 677899999999999998887765
No 98
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=23.17 E-value=2.3e+02 Score=18.68 Aligned_cols=28 Identities=4% Similarity=0.197 Sum_probs=13.0
Q ss_pred HHhhhhHHHHHHHh---hhhhHHHHHHHHhh
Q psy8149 47 RKFGDELVIISDRI---KDRTISQIKSNLKK 74 (182)
Q Consensus 47 ~rFg~dL~kIS~~I---k~RTv~QIKs~lKr 74 (182)
....+++..|.+.+ ..+-...|+.+++|
T Consensus 8 ~~~~~~~~~l~~~~~~~~~~d~~~l~~~~H~ 38 (90)
T PF01627_consen 8 EEAPEDLEQLEQALQALEQEDWEELRRLAHR 38 (90)
T ss_dssp HHHHHHHHHHHHHHCSSHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHH
Confidence 33344444444444 44445555555443
No 99
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=23.07 E-value=2.4e+02 Score=19.32 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy8149 32 NKWTAEDIEMLKETVRKF 49 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rF 49 (182)
..||.+|.+.|.+.|.++
T Consensus 3 ~~fs~~E~~~Lv~~v~~~ 20 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKH 20 (78)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 589999999999998876
No 100
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=23.00 E-value=88 Score=26.85 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 39 IEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 39 iemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
+..+++.+.+.|++|.+|+..|..+...+-+..+++
T Consensus 208 l~~~~~~l~~~a~~l~~ia~ai~~~~~~~~~~~l~~ 243 (284)
T PF12805_consen 208 LFRFQRLLEQLAQALRQIAQAILRGRPYHHRNRLKR 243 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHH
Confidence 467899999999999999999986666554444443
No 101
>PF00524 PPV_E1_N: E1 Protein, N terminal domain; InterPro: IPR014000 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a centrally-located DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. This entry represents the N-terminal region of E1, which contains the nuclear localisation signal.; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=22.75 E-value=22 Score=28.59 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=14.6
Q ss_pred HHHHhhhhhh--hcCCCCC
Q psy8149 69 KSNLKKKAFE--DAGLPIQ 85 (182)
Q Consensus 69 Ks~lKrK~~e--dag~p~~ 85 (182)
+.+.|||+|+ |+|+...
T Consensus 109 ~~~aKRRLf~~~DSG~g~s 127 (130)
T PF00524_consen 109 SKKAKRRLFEEQDSGYGNS 127 (130)
T ss_pred CCcccccccccCCCCcccc
Confidence 6889999999 9998754
No 102
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.62 E-value=58 Score=28.36 Aligned_cols=15 Identities=27% Similarity=0.674 Sum_probs=13.4
Q ss_pred CCCCCHHHHHHHHHH
Q psy8149 31 GNKWTAEDIEMLKET 45 (182)
Q Consensus 31 ~~KWTdeEiemLr~a 45 (182)
+|-||++|+++|+++
T Consensus 201 EGGfs~~Ei~~l~~~ 215 (246)
T COG1385 201 EGGFSEDEIELLREA 215 (246)
T ss_pred CCCCCHHHHHHHHHC
Confidence 578999999999985
No 103
>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3.1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....
Probab=22.58 E-value=1.7e+02 Score=24.15 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQ 67 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~Q 67 (182)
++++++|.++|..++.++.+-+..+.+.-.++.+.+
T Consensus 147 ~~f~~~E~~~l~~~~~~a~~~l~~~i~~~~~~~mn~ 182 (184)
T PF01195_consen 147 SKFSPEERELLDKVIPQAAEALEQIIEGGFEKAMNK 182 (184)
T ss_dssp SB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 699999999999999999998888877766555544
No 104
>cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A) and related proteins, N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen
Probab=22.51 E-value=2.1e+02 Score=19.11 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=25.3
Q ss_pred cccCCCCCCCCCCCHHHHHHHHH--HHHHhhhhHHHHHHHh
Q psy8149 22 LHSTPDSPSGNKWTAEDIEMLKE--TVRKFGDELVIISDRI 60 (182)
Q Consensus 22 Lh~~~ds~~~~KWTdeEiemLr~--aV~rFg~dL~kIS~~I 60 (182)
+.|.-+......+|++||..|+. .+.++|--|..|...+
T Consensus 27 ~~~~r~~~g~R~yt~~di~~l~~i~~l~~~g~~l~~i~~~l 67 (68)
T cd04763 27 LKPQRSDGGHRLFNDADIDRILEIKRWIDNGVQVSKVKKLL 67 (68)
T ss_pred CCCCcCCCCCcccCHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 34433332336799999998875 3455787787776654
No 105
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=22.38 E-value=1.7e+02 Score=20.73 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 39 IEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 39 iemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
...+.+-++.|-+||.++-..++..+..+-+..+|-
T Consensus 3 ~~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~ 38 (61)
T PRK09400 3 SNKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKV 38 (61)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 356788899999999999999999999888877763
No 106
>PF02538 Hydantoinase_B: Hydantoinase B/oxoprolinase; InterPro: IPR003692 An appreciable fraction of the sulphur present in mammals occurs in the form of glutathione. The synthesis of glutathione and its utilization take place by the reactions of the gamma-glutamyl cycle, which include those catalysed by gamma-glutamylcysteine and glutathione synthetases, gamma-glutamyl transpeptidase, cysteinylglycinase, gamma-glutamyl cyclotransferease, and 5-oxoprolinase []. This family includes N-methylhydantoinase B which converts hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase 3.5.2.9 from EC which catalyses the formation of L-glutamate from 5-oxo-L-proline. These enzymes are part of the oxoprolinase family and are related to hydantoinase_A.; GO: 0003824 catalytic activity
Probab=22.28 E-value=1.7e+02 Score=28.00 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhh-HHHHHHHhhhhhHHHHHHHHhh
Q psy8149 39 IEMLKETVRKFGDE-LVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 39 iemLr~aV~rFg~d-L~kIS~~Ik~RTv~QIKs~lKr 74 (182)
.++|.+.+.|||.| +....+.|.+++....|..|.+
T Consensus 195 ~~rl~el~~~yG~d~v~~~~~~~~~~sE~~~r~~I~~ 231 (527)
T PF02538_consen 195 ARRLLELIERYGADTVRAAMDEILDYSERRMRAAIAE 231 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999987 8889999999999999988854
No 107
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.24 E-value=3.2e+02 Score=20.45 Aligned_cols=40 Identities=8% Similarity=0.088 Sum_probs=27.4
Q ss_pred ccCCCCCCCCCCCHHHHHHHHH--HHHHhhhhHHHHHHHhhh
Q psy8149 23 HSTPDSPSGNKWTAEDIEMLKE--TVRKFGDELVIISDRIKD 62 (182)
Q Consensus 23 h~~~ds~~~~KWTdeEiemLr~--aV~rFg~dL~kIS~~Ik~ 62 (182)
.|.-+......|+++++.+|+. .++..|=.|..|.+.+..
T Consensus 27 ~p~r~~~g~R~Y~~~~~~~l~~I~~lr~~G~sl~eI~~~l~~ 68 (112)
T cd01282 27 VPERSANGYRDYDEAAVDRVRQIRRLLAAGLTLEEIREFLPC 68 (112)
T ss_pred CCCcCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3533332336899999998874 456668888888887764
No 108
>cd04773 HTH_TioE_rpt2 Second Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD mainly contains the C-terminal or second repeat (rpt2) of these tandem MerR-like domain proteins.
Probab=22.11 E-value=3.3e+02 Score=20.29 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=28.1
Q ss_pred cccCCCCCCC-CCCCHHHHHHHHH--HHHHhhhhHHHHHHHhhh
Q psy8149 22 LHSTPDSPSG-NKWTAEDIEMLKE--TVRKFGDELVIISDRIKD 62 (182)
Q Consensus 22 Lh~~~ds~~~-~KWTdeEiemLr~--aV~rFg~dL~kIS~~Ik~ 62 (182)
|+|......| -.|+++|++.|+. .++++|-.|..|.+.+..
T Consensus 26 l~p~~~~~~g~R~Y~~~dl~~l~~I~~lr~~G~~l~~I~~~l~~ 69 (108)
T cd04773 26 LSPDREPETGYRVYDPSDVRDARLIHLLRRGGYLLEQIATVVEQ 69 (108)
T ss_pred CCCCcCCCCCceeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3454443333 4699999999875 456668888888887753
No 109
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=22.09 E-value=2.2e+02 Score=22.50 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHHHH-h--hhhHHHHHHHhhhhhHHHHHHHHhhhhhh----hcCCCCCCCC
Q psy8149 31 GNKWTAEDIEMLKETVRK-F--GDELVIISDRIKDRTISQIKSNLKKKAFE----DAGLPIQQQV 88 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~r-F--g~dL~kIS~~Ik~RTv~QIKs~lKrK~~e----dag~p~~~~~ 88 (182)
-+.+|++|++.|.+.|.. | +.||.+. ....|+--.+=+.|. ..|+|++-+-
T Consensus 45 ~~~Lt~~qi~~l~~~i~~~~~i~~dL~~~-------~~~dI~rl~~I~sYRG~RH~~gLPVRGQR 102 (122)
T CHL00137 45 TKDLTDEQISALREIIEENYQVEGDLRRF-------ESLNIKRLMEINCYRGRRHRLGLPVRGQR 102 (122)
T ss_pred cccCCHHHHHHHHHHHHHhCcchHHHHHH-------HHHHHHHHHHhCchhcccccCCCCCCCCc
Confidence 368999999999999974 4 4444332 223333333334554 3688988644
No 110
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.99 E-value=2.1e+02 Score=22.33 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHH
Q psy8149 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQI 68 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QI 68 (182)
.....+...|.+.|..|-+.+.-|-+.++.|...++
T Consensus 82 ~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~ 117 (218)
T cd07596 82 AQANQELVKLLEPLKEYLRYCQAVKETLDDRADALL 117 (218)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777777777664443
No 111
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=21.83 E-value=66 Score=20.67 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=10.8
Q ss_pred ChhHhhHhhHHHH
Q psy8149 1 VGDIFLAAGTAFN 13 (182)
Q Consensus 1 V~EIF~aAG~AF~ 13 (182)
++|||..|.-.|.
T Consensus 2 a~EIf~~A~i~~~ 14 (32)
T PRK11876 2 ASEIFGIAALFWV 14 (32)
T ss_pred cHHHHHHHHHHHH
Confidence 4899999988775
No 112
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=21.53 E-value=58 Score=31.83 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHhhhhhhccccCCCCCCCCCCCHHHHHHHHHHHHHhhhh-HHHHHHHhhhhhHHHHHHH
Q psy8149 13 NKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDE-LVIISDRIKDRTISQIKSN 71 (182)
Q Consensus 13 ~kLgeLTmqLh~~~ds~~~~KWTdeEiemLr~aV~rFg~d-L~kIS~~Ik~RTv~QIKs~ 71 (182)
+.|=-+-+|.|+..----+|.|+..|=++|+.+|+.||-- |.+|+....-||-.|++..
T Consensus 2 ~~~~~~~l~~~~~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~r 61 (512)
T COG5147 2 TSLHNKELQIKLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNR 61 (512)
T ss_pred CccccHhhhcccccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccch
No 113
>PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional
Probab=21.44 E-value=63 Score=27.18 Aligned_cols=15 Identities=33% Similarity=0.700 Sum_probs=13.0
Q ss_pred CCCCCHHHHHHHHHH
Q psy8149 31 GNKWTAEDIEMLKET 45 (182)
Q Consensus 31 ~~KWTdeEiemLr~a 45 (182)
+|-|+++|++.|+++
T Consensus 187 EGGfs~~Ei~~l~~~ 201 (234)
T PRK11713 187 EGGFSPEEIELLREA 201 (234)
T ss_pred CCCCCHHHHHHHHHC
Confidence 578999999999874
No 114
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=21.39 E-value=1.4e+02 Score=19.08 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
.+||.+|...+... ..-|.....|+..+. |..+=|...|||
T Consensus 3 ~~Lt~~eR~~I~~l-~~~G~s~~~IA~~lg-~s~sTV~relkR 43 (44)
T PF13936_consen 3 KHLTPEERNQIEAL-LEQGMSIREIAKRLG-RSRSTVSRELKR 43 (44)
T ss_dssp ---------HHHHH-HCS---HHHHHHHTT---HHHHHHHHHH
T ss_pred cchhhhHHHHHHHH-HHcCCCHHHHHHHHC-cCcHHHHHHHhc
Confidence 46888888887754 456888888888774 555666666665
No 115
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=21.20 E-value=2.3e+02 Score=24.54 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHH-HhhhhHHHHHHHhhhhhHHHHHHHHhhhhhh
Q psy8149 33 KWTAEDIEMLKETVR-KFGDELVIISDRIKDRTISQIKSNLKKKAFE 78 (182)
Q Consensus 33 KWTdeEiemLr~aV~-rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~e 78 (182)
+=|++||+.-.+.+. +||++++..-+..+-.+..++|..+++.+..
T Consensus 68 ~vsd~ev~~~i~~~~~~~~~~f~~~L~~~G~~~~~~~r~~i~~~l~~ 114 (283)
T PRK02998 68 KVSDEEAKKQVEEAKDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAF 114 (283)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 457888866555444 6687777666655555556666666554433
No 116
>PF05141 DIT1_PvcA: Pyoverdine/dityrosine biosynthesis protein; InterPro: IPR007817 This entry is found in DIT1, a protein is involved in the synthesis of dityrosine []. Dityrosine is a sporulation-specific component of the Saccharomyces cerevisiae ascospore wall that is essential for the resistance of the spores to adverse environmental conditions. Q9I1L5 from SWISSPROT is involved in the biosynthesis of pyoverdine [].; PDB: 3E59_C.
Probab=21.19 E-value=1.3e+02 Score=26.97 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=21.4
Q ss_pred HHHHHHhhhhHHHHHHHhhh-hhHHHHHHHHhhhhhhhc
Q psy8149 43 KETVRKFGDELVIISDRIKD-RTISQIKSNLKKKAFEDA 80 (182)
Q Consensus 43 r~aV~rFg~dL~kIS~~Ik~-RTv~QIKs~lKrK~~eda 80 (182)
+..+.+||+|...|...|++ --+...-.-..|=+++|-
T Consensus 133 ~~L~~~~~~~~~~~~~~i~~~~~~~~tYrG~~rFl~eDL 171 (278)
T PF05141_consen 133 RELMNRYGPDDFDIRAEIKSDPDTLLTYRGYSRFLEEDL 171 (278)
T ss_dssp HHHHHHH---HHHHHHHHTTSHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhhhCCChhhHHHHHhcChHHHHHHHHHHHHHHhhh
Confidence 44567899999888888876 112223334566788884
No 117
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=21.10 E-value=1.7e+02 Score=22.18 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHhhh--hHHHHHHHh-------hhhhHHHHHHHHhhhhh
Q psy8149 33 KWTAEDIEMLKETVRKFGD--ELVIISDRI-------KDRTISQIKSNLKKKAF 77 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~--dL~kIS~~I-------k~RTv~QIKs~lKrK~~ 77 (182)
+.|..|.+-|.-.+.+-|+ .-+.|.+.| ..||+...-..|+||+-
T Consensus 147 ~Lt~~E~~il~~l~~~~g~~~s~~~i~~~~w~~~~~~~~~tv~~~i~rlr~Kl~ 200 (223)
T PRK11517 147 TLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD 200 (223)
T ss_pred eCCHHHHHHHHHHHhCCCccCCHHHHHHHhcCCCCCCCcCCHHHHHHHHHHhhc
Confidence 5899999999999998886 466677776 57899999999999984
No 118
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=21.09 E-value=3.1e+02 Score=21.47 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=28.7
Q ss_pred cCCCCCCC-CCCCHHHHHHHHH--HHHHhhhhHHHHHHHhhhh
Q psy8149 24 STPDSPSG-NKWTAEDIEMLKE--TVRKFGDELVIISDRIKDR 63 (182)
Q Consensus 24 ~~~ds~~~-~KWTdeEiemLr~--aV~rFg~dL~kIS~~Ik~R 63 (182)
|...+..| ..|+++++..|+. .++..|=-|..|.+.+..+
T Consensus 29 p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~sL~eI~~~l~~~ 71 (140)
T PRK09514 29 PEVRTEGGYRLYTEQDLQRLRFIRRAKQLGFTLEEIRELLSIR 71 (140)
T ss_pred CcccCCCCCeeeCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 43333333 7899999998875 4667788899999888643
No 119
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=20.72 E-value=1.1e+02 Score=24.83 Aligned_cols=46 Identities=26% Similarity=0.606 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHH-Hh--hhhHHHHHHHhhhhhHHHHHHHHhh----hhhh----hcCCCCCCCC
Q psy8149 32 NKWTAEDIEMLKETVR-KF--GDELVIISDRIKDRTISQIKSNLKK----KAFE----DAGLPIQQQV 88 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~-rF--g~dL~kIS~~Ik~RTv~QIKs~lKr----K~~e----dag~p~~~~~ 88 (182)
+--|||||+.|+++|. .| +-||.+ +++..+|| +.|. ..|+|++-+-
T Consensus 46 ~eLteeei~~ir~~i~~~~~vegDLr~-----------~v~~dIkRl~~i~~YRGiRH~~GLpVRGQr 102 (121)
T COG0099 46 GELTEEEIERLRDAIQNKYLVEGDLRR-----------EVRMDIKRLMKIGCYRGIRHRRGLPVRGQR 102 (121)
T ss_pred ccCCHHHHHHHHHHHHhcCeehhHHHH-----------HHHHHHHHHHHhhhhhhhhhhcCCCCCCcc
Confidence 4568999999999999 44 666643 33344443 3443 5799998654
No 120
>PRK07281 methionine aminopeptidase; Reviewed
Probab=20.60 E-value=2.7e+02 Score=24.56 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHhh-hhhHHHHHHHHhhhhhh
Q psy8149 35 TAEDIEMLKETVRKFGDELVIISDRIK-DRTISQIKSNLKKKAFE 78 (182)
Q Consensus 35 TdeEiemLr~aV~rFg~dL~kIS~~Ik-~RTv~QIKs~lKrK~~e 78 (182)
+++||+.+|.|..--..=+..+-+.|+ ..|..+|...+.+...+
T Consensus 6 s~~EI~~mr~A~~i~~~~~~~~~~~i~pG~te~ei~~~~~~~~~~ 50 (286)
T PRK07281 6 SAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKE 50 (286)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHH
Confidence 689999999999988888888888886 67899998888654444
No 121
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=20.54 E-value=2.1e+02 Score=20.01 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhh-HHHHHHHhh-hhhHHHHHHHHhhhhhhhcCCCC
Q psy8149 37 EDIEMLKETVRKFGDE-LVIISDRIK-DRTISQIKSNLKKKAFEDAGLPI 84 (182)
Q Consensus 37 eEiemLr~aV~rFg~d-L~kIS~~Ik-~RTv~QIKs~lKrK~~edag~p~ 84 (182)
+|..+|++.+++|.++ +......+- ++ .+-..+-+++ -++|+--
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~---~~p~~~~~~l-~~~G~~~ 47 (113)
T PF02771_consen 2 EEQQALREEAREFAEEEIAPHAAEWDEDG---RFPREVWRAL-GEAGLLG 47 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHT---SCHHHHHHHH-HHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHchHHHHHHHHhC---CCCHHHHHHH-HHHHHhh
Confidence 6889999999999866 554444442 22 2223344444 4566653
No 122
>PF12720 DUF3807: Protein of unknown function (DUF3807); InterPro: IPR024526 This is a family of conserved fungal proteins of unknown function.
Probab=20.43 E-value=1.1e+02 Score=25.86 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=11.2
Q ss_pred CCCCHHHHHHHHH
Q psy8149 32 NKWTAEDIEMLKE 44 (182)
Q Consensus 32 ~KWTdeEiemLr~ 44 (182)
.--|||.|+||||
T Consensus 48 RTLTDEQI~IFRH 60 (172)
T PF12720_consen 48 RTLTDEQIEIFRH 60 (172)
T ss_pred ccccHHHHHHHHH
Confidence 3468999999999
No 123
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=20.43 E-value=2.6e+02 Score=20.15 Aligned_cols=41 Identities=7% Similarity=0.148 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhh
Q psy8149 37 EDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAF 77 (182)
Q Consensus 37 eEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~ 77 (182)
++.....+|+..|=+-++.....||.-+-...|..+|+|+=
T Consensus 17 d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~ 57 (75)
T cd02677 17 EEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIA 57 (75)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 44567788999998889999999988888888999998863
No 124
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=20.42 E-value=1.9e+02 Score=19.63 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149 38 DIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKA 76 (182)
Q Consensus 38 EiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~ 76 (182)
+-....+|+..|-+-++.+...++.-+..+.|..++.|+
T Consensus 17 ~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~ 55 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKM 55 (69)
T ss_dssp HTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 344678899999888888888888888888888888775
No 125
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.34 E-value=3.7e+02 Score=20.74 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=29.7
Q ss_pred ccCCCCCCC-CCCCHHHHHHHHH--HHHHhhhhHHHHHHHhhhh
Q psy8149 23 HSTPDSPSG-NKWTAEDIEMLKE--TVRKFGDELVIISDRIKDR 63 (182)
Q Consensus 23 h~~~ds~~~-~KWTdeEiemLr~--aV~rFg~dL~kIS~~Ik~R 63 (182)
.|....+.| ..|+++++++|+- .++.+|=-|..|.+.+..+
T Consensus 28 ~p~~r~~~gyR~Y~~~~l~~l~~I~~lr~~G~sl~eI~~~l~~~ 71 (131)
T TIGR02043 28 KPAGRTDSGYRLYTDEDQKRLRFILKAKELGFTLDEIKELLSIK 71 (131)
T ss_pred CCCCcCCCCceecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 454443444 7899999998864 4677888899998888643
No 126
>PTZ00059 dynein light chain; Provisional
Probab=20.33 E-value=1.1e+02 Score=22.55 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhh
Q psy8149 39 IEMLKETVRKFGDELVIISDRIK 61 (182)
Q Consensus 39 iemLr~aV~rFg~dL~kIS~~Ik 61 (182)
++....|+.+|..+ ..|+..||
T Consensus 23 ~~~~~~Al~~~~~~-kdiA~~IK 44 (90)
T PTZ00059 23 IDCANQALEKFNIE-KDIAAYIK 44 (90)
T ss_pred HHHHHHHHHHcCch-HHHHHHHH
Confidence 44566677777654 44555443
No 127
>KOG1586|consensus
Probab=20.30 E-value=70 Score=29.32 Aligned_cols=81 Identities=23% Similarity=0.341 Sum_probs=46.8
Q ss_pred hhHhhHHHHHhhhhhhccccCCCCC-----CCC----CCCHHHHHHHHHHHHHhhhh--HHH-------HHHHhhhhhHH
Q psy8149 5 FLAAGTAFNKLADLTLQLHSTPDSP-----SGN----KWTAEDIEMLKETVRKFGDE--LVI-------ISDRIKDRTIS 66 (182)
Q Consensus 5 F~aAG~AF~kLgeLTmqLh~~~ds~-----~~~----KWTdeEiemLr~aV~rFg~d--L~k-------IS~~Ik~RTv~ 66 (182)
.++||.||.|+++|-++..+--|.- +.. -=+++-|+-|..|+.-|-|. +++ |++.-.+-. .
T Consensus 50 w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl-~ 128 (288)
T KOG1586|consen 50 WSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDL-Q 128 (288)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhH-H
Confidence 4789999999999999886533311 011 12456678888888877443 222 333332221 1
Q ss_pred HHHHHHhhhhhhhcCCCCCCCC
Q psy8149 67 QIKSNLKKKAFEDAGLPIQQQV 88 (182)
Q Consensus 67 QIKs~lKrK~~edag~p~~~~~ 88 (182)
.+...| ..||.+|==...+.
T Consensus 129 d~ekaI--~~YE~Aae~yk~ee 148 (288)
T KOG1586|consen 129 DFEKAI--AHYEQAAEYYKGEE 148 (288)
T ss_pred HHHHHH--HHHHHHHHHHcchh
Confidence 222222 46888876665544
No 128
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=20.27 E-value=54 Score=27.28 Aligned_cols=14 Identities=43% Similarity=0.712 Sum_probs=9.7
Q ss_pred CCCCCHHHHHHHHH
Q psy8149 31 GNKWTAEDIEMLKE 44 (182)
Q Consensus 31 ~~KWTdeEiemLr~ 44 (182)
+|-||++|+++|++
T Consensus 184 EGGfs~~E~~~~~~ 197 (225)
T PF04452_consen 184 EGGFSEEEIEFLKE 197 (225)
T ss_dssp TT---HHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 46899999999987
No 129
>cd00095 IFab Interferon alpha, beta. Includes also interferon omega and tau. Different from interferon gamma family. Type I interferons(alpha, beta) belong to the larger helical cytokine superfamily, which includes growth hormones, interleukins, several colony-stimulating factors and several other regulatory molecules. All function as regulators of cellular activty by interacting with cell-surface receptors and activating various signalling pathways. Interferons produce antiviral and antiproliferative responses in cells. Receptor specificity determines function of the various members of the family.
Probab=20.22 E-value=3.4e+02 Score=22.04 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=35.2
Q ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhh-h-------hhHHHHHHHHhh
Q psy8149 22 LHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIK-D-------RTISQIKSNLKK 74 (182)
Q Consensus 22 Lh~~~ds~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik-~-------RTv~QIKs~lKr 74 (182)
|-....|+ .-|.+.-++.|+..|.+--++|...-.-.. . -+...||..-+|
T Consensus 65 LF~~~~ss--a~Wnet~le~fl~~L~~Ql~~Le~C~~~~~~~~~~~~~~~~~l~lk~YF~r 123 (152)
T cd00095 65 IFSTPSSS--AAWNETLLESLLNELHQQLNHLETCLEQEMGEEETPGPRNTHLHLRKYFQR 123 (152)
T ss_pred HHcCCCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccchhHHHHHHHH
Confidence 33444454 469999999999999999999988654433 2 134566666555
No 130
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=20.11 E-value=4.5e+02 Score=21.98 Aligned_cols=58 Identities=21% Similarity=0.100 Sum_probs=43.4
Q ss_pred HhhHhhHHHHHhhhhhhccccCCCCCC-CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhh
Q psy8149 4 IFLAAGTAFNKLADLTLQLHSTPDSPS-GNKWTAEDIEMLKETVRKFGDELVIISDRIK 61 (182)
Q Consensus 4 IF~aAG~AF~kLgeLTmqLh~~~ds~~-~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik 61 (182)
|+......-.+|..|.+.+....-.|+ +|+|-.+--+.+.....+--+-|..++-+++
T Consensus 50 ~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G~FP~~~Y~~l~~~~~~il~~l~~l~~~~~ 108 (229)
T PF10334_consen 50 IRKRFLKLQQSLNSLRTLLAFAKFEPSLKGRFPKETYQRLLELCQNILDLLSLLSYVST 108 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556777888888887777776 8999999988888888877777777766554
No 131
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=20.04 E-value=1.7e+02 Score=27.50 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHh-h---hhHHHHHHHhhhhhHHHHHH---HHhhhhhhhc
Q psy8149 31 GNKWTAEDIEMLKETVRKF-G---DELVIISDRIKDRTISQIKS---NLKKKAFEDA 80 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rF-g---~dL~kIS~~Ik~RTv~QIKs---~lKrK~~eda 80 (182)
...|+..|--.|..++..- | -|+.-|...+..|...+|+. .||.++..++
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rvarea 77 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRVAREA 77 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHHHHHH
Confidence 3689999999998888754 3 36777888999999999985 4566555443
Done!