Query psy8149
Match_columns 182
No_of_seqs 61 out of 63
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 19:51:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.0 1.3E-09 4.4E-14 75.9 6.3 56 30-87 8-67 (72)
2 2yus_A SWI/SNF-related matrix- 98.9 6.9E-10 2.3E-14 79.8 4.5 52 28-79 15-66 (79)
3 2yum_A ZZZ3 protein, zinc fing 98.9 2.4E-09 8.3E-14 74.5 6.5 56 31-86 8-71 (75)
4 1x41_A Transcriptional adaptor 98.7 1.6E-08 5.6E-13 68.2 5.9 48 30-77 7-55 (60)
5 2elk_A SPCC24B10.08C protein; 98.7 1.1E-08 3.6E-13 69.0 4.9 44 31-74 9-54 (58)
6 2iw5_B Protein corest, REST co 98.7 1.1E-08 3.7E-13 87.6 6.0 55 18-72 119-174 (235)
7 2eqr_A N-COR1, N-COR, nuclear 98.6 3.6E-08 1.2E-12 67.1 5.3 44 28-71 9-52 (61)
8 1guu_A C-MYB, MYB proto-oncoge 98.6 3.4E-08 1.2E-12 64.2 4.3 44 31-74 3-47 (52)
9 2xag_B REST corepressor 1; ami 98.6 7.9E-08 2.7E-12 88.8 7.6 45 28-72 377-421 (482)
10 2cqq_A RSGI RUH-037, DNAJ homo 98.6 9.7E-08 3.3E-12 67.8 6.0 45 29-74 6-54 (72)
11 1gvd_A MYB proto-oncogene prot 98.6 4E-08 1.4E-12 64.0 3.3 43 31-73 3-46 (52)
12 2yqk_A Arginine-glutamic acid 98.5 8.8E-08 3E-12 65.9 5.0 41 31-71 9-50 (63)
13 2d9a_A B-MYB, MYB-related prot 98.5 9E-08 3.1E-12 64.0 4.3 45 30-74 7-52 (60)
14 2ltp_A Nuclear receptor corepr 97.8 2.3E-08 7.9E-13 72.7 0.0 43 30-72 15-57 (89)
15 1w0t_A Telomeric repeat bindin 98.4 1.6E-07 5.3E-12 61.7 3.9 42 31-72 2-46 (53)
16 2cqr_A RSGI RUH-043, DNAJ homo 98.4 1.5E-07 5.1E-12 67.1 3.4 44 31-74 18-65 (73)
17 3sjm_A Telomeric repeat-bindin 98.4 2.4E-07 8.4E-12 63.9 4.2 47 26-72 6-55 (64)
18 2cjj_A Radialis; plant develop 98.4 4.5E-07 1.5E-11 67.3 5.8 46 29-74 6-55 (93)
19 2llk_A Cyclin-D-binding MYB-li 98.4 4E-07 1.4E-11 65.0 5.1 42 31-73 23-64 (73)
20 2din_A Cell division cycle 5-l 98.4 6E-07 2.1E-11 61.1 5.6 43 31-74 9-51 (66)
21 2dim_A Cell division cycle 5-l 98.4 5.7E-07 1.9E-11 61.8 5.3 45 30-74 8-53 (70)
22 2crg_A Metastasis associated p 98.3 4.9E-07 1.7E-11 63.5 4.1 42 30-71 7-49 (70)
23 3osg_A MYB21; transcription-DN 98.3 5.5E-07 1.9E-11 68.0 4.4 47 30-76 10-56 (126)
24 2k9n_A MYB24; R2R3 domain, DNA 98.3 7.1E-07 2.4E-11 65.6 4.8 43 32-74 2-45 (107)
25 1ity_A TRF1; helix-turn-helix, 98.3 5.9E-07 2E-11 61.7 3.8 43 31-73 10-55 (69)
26 1wgx_A KIAA1903 protein; MYB D 98.3 1.1E-06 3.7E-11 63.3 5.0 45 30-74 7-55 (73)
27 1gv2_A C-MYB, MYB proto-oncoge 98.2 8.8E-07 3E-11 64.3 4.3 43 31-73 56-98 (105)
28 3osg_A MYB21; transcription-DN 98.2 1.3E-06 4.6E-11 65.9 4.9 57 31-88 62-118 (126)
29 2k9n_A MYB24; R2R3 domain, DNA 98.2 1.7E-06 5.8E-11 63.5 5.2 43 31-73 53-95 (107)
30 1gv2_A C-MYB, MYB proto-oncoge 98.2 9.7E-07 3.3E-11 64.0 3.6 45 31-75 4-49 (105)
31 1h8a_C AMV V-MYB, MYB transfor 98.1 2.7E-06 9.2E-11 63.9 4.9 44 31-74 27-71 (128)
32 1h8a_C AMV V-MYB, MYB transfor 98.1 2.7E-06 9.3E-11 63.9 3.9 43 31-73 79-121 (128)
33 3zqc_A MYB3; transcription-DNA 98.0 2E-06 6.7E-11 65.2 1.5 46 31-76 2-48 (131)
34 3zqc_A MYB3; transcription-DNA 97.9 5.2E-06 1.8E-10 62.8 3.4 43 31-73 54-96 (131)
35 2ckx_A NGTRF1, telomere bindin 97.9 8.7E-06 3E-10 59.2 4.2 42 32-73 1-47 (83)
36 1x58_A Hypothetical protein 49 97.9 8.6E-06 2.9E-10 57.3 3.8 45 28-72 5-52 (62)
37 4a69_C Nuclear receptor corepr 97.9 7.8E-06 2.7E-10 60.3 3.2 41 31-71 43-83 (94)
38 1h89_C C-MYB, MYB proto-oncoge 97.8 1.1E-05 3.8E-10 62.4 4.1 43 31-73 110-152 (159)
39 1h89_C C-MYB, MYB proto-oncoge 97.7 2.8E-05 9.6E-10 60.2 4.8 44 31-74 58-102 (159)
40 2aje_A Telomere repeat-binding 97.7 1.8E-05 6.1E-10 60.1 2.7 43 30-72 12-59 (105)
41 1irz_A ARR10-B; helix-turn-hel 97.7 9.5E-05 3.2E-09 52.1 6.0 46 29-74 5-55 (64)
42 2juh_A Telomere binding protei 97.6 4.1E-05 1.4E-09 59.4 4.4 43 31-73 17-64 (121)
43 2roh_A RTBP1, telomere binding 97.6 4E-05 1.4E-09 59.6 4.3 44 30-73 30-78 (122)
44 4eef_G F-HB80.4, designed hema 97.6 3.7E-06 1.3E-10 61.1 -2.5 43 30-72 19-65 (74)
45 1ign_A Protein (RAP1); RAP1,ye 96.9 0.00049 1.7E-08 59.3 3.2 43 31-73 8-56 (246)
46 3hm5_A DNA methyltransferase 1 96.7 0.002 6.9E-08 48.1 5.0 50 32-81 31-88 (93)
47 2xag_B REST corepressor 1; ami 95.9 0.0013 4.4E-08 61.0 0.0 37 32-68 190-226 (482)
48 4b4c_A Chromodomain-helicase-D 94.7 0.02 6.9E-07 45.4 3.3 39 32-70 8-51 (211)
49 2ebi_A DNA binding protein GT- 93.8 0.13 4.4E-06 36.0 5.5 43 31-73 4-60 (86)
50 4iej_A DNA methyltransferase 1 92.5 0.12 4E-06 38.7 3.9 48 32-79 31-86 (93)
51 1ofc_X ISWI protein; nuclear p 91.3 0.11 3.8E-06 45.5 3.0 47 32-80 111-158 (304)
52 2y9y_A Imitation switch protei 82.8 0.75 2.6E-05 41.5 3.1 49 32-82 124-174 (374)
53 2xb0_X Chromo domain-containin 77.5 0.95 3.3E-05 38.9 1.9 25 32-56 4-31 (270)
54 1ug2_A 2610100B20RIK gene prod 74.8 4 0.00014 30.8 4.4 48 33-80 35-87 (95)
55 1ofc_X ISWI protein; nuclear p 73.9 5.3 0.00018 34.9 5.7 43 30-72 211-269 (304)
56 1fex_A TRF2-interacting telome 63.2 6.8 0.00023 26.2 3.3 45 32-76 3-57 (59)
57 3vf1_A 11R-lipoxygenase; LOX, 61.8 6.2 0.00021 37.8 3.9 32 31-65 647-678 (698)
58 3dy5_A Allene oxide synthase-l 61.6 6.1 0.00021 39.7 3.9 32 31-65 1015-1046(1066)
59 3fg1_A Allene oxide synthase-l 61.0 6.6 0.00023 37.7 3.9 32 31-65 645-676 (696)
60 2vqe_M 30S ribosomal protein S 60.4 14 0.00048 28.5 5.0 47 31-88 45-102 (126)
61 3rde_A Arachidonate 12-lipoxyg 60.2 7.4 0.00025 36.6 4.1 31 32-65 523-553 (573)
62 3v98_A Arachidonate 5-lipoxyge 57.3 8.4 0.00029 37.0 3.9 31 32-65 641-671 (691)
63 3d3l_A Arachidonate 12-lipoxyg 57.2 6.3 0.00022 36.8 3.0 31 33-65 459-489 (541)
64 4b4c_A Chromodomain-helicase-D 57.1 10 0.00036 29.6 3.9 27 32-58 135-162 (211)
65 2hyv_A Annexin A2; calcium-bin 54.9 8.5 0.00029 32.6 3.2 35 36-70 5-39 (308)
66 1lox_A 15-lipoxygenase, 15LOX; 54.4 7.3 0.00025 37.1 3.0 31 33-65 612-642 (662)
67 1yii_A Annexin A5, annexin V, 52.0 7.9 0.00027 32.8 2.6 35 36-70 17-51 (320)
68 1dm5_A Annexin XII E105K mutan 51.0 8.4 0.00029 32.7 2.6 35 36-70 15-49 (315)
69 1f8n_A Lipoxygenase-1; dioxyge 50.3 9.5 0.00032 37.6 3.1 33 32-66 770-802 (839)
70 2iuk_A SEED lipoxygenase; iron 50.1 9.6 0.00033 37.8 3.1 33 32-66 796-828 (864)
71 1w3w_A Annexin A8; coagulation 50.0 8.3 0.00028 33.1 2.4 35 36-70 24-58 (327)
72 1axn_A Annexin III; annexin fa 49.7 8 0.00027 33.0 2.3 35 36-70 21-55 (323)
73 2zhj_A Annexin A4; zynogen gra 49.5 13 0.00044 31.6 3.5 36 35-70 19-54 (322)
74 2jns_A Bromodomain-containing 49.0 15 0.0005 26.2 3.2 38 28-65 12-50 (90)
75 1n00_A Annexin GH1; membrane-b 48.3 7.6 0.00026 33.0 1.9 35 36-70 19-53 (321)
76 2lr8_A CAsp8-associated protei 53.0 4 0.00014 29.3 0.0 41 32-73 15-58 (70)
77 2iuj_A Lipoxygenase L-5; dioxy 46.9 11 0.00036 37.4 2.9 32 33-66 786-817 (853)
78 2akf_A Coronin-1A; coiled coil 46.5 32 0.0011 21.2 4.0 27 36-62 5-31 (32)
79 3r8n_M 30S ribosomal protein S 46.3 16 0.00053 27.7 3.2 47 31-88 44-100 (114)
80 1hm6_A Annexin 1; phospholipid 46.2 11 0.00038 32.7 2.6 35 36-70 45-79 (346)
81 2bzw_B BCL2-antagonist of cell 42.4 16 0.00055 21.8 2.1 17 45-61 7-23 (27)
82 2zhj_A Annexin A4; zynogen gra 42.0 13 0.00044 31.6 2.4 36 36-71 92-127 (322)
83 1ku5_A HPHA, archaeal histon; 41.7 14 0.00049 24.7 2.1 35 31-65 21-59 (70)
84 1fse_A GERE; helix-turn-helix 41.5 40 0.0014 21.0 4.2 45 30-76 8-54 (74)
85 1hm6_A Annexin 1; phospholipid 40.7 14 0.00047 32.1 2.4 35 36-70 117-151 (346)
86 3s2w_A Transcriptional regulat 40.6 23 0.0008 25.3 3.3 25 32-56 134-158 (159)
87 2hyv_A Annexin A2; calcium-bin 40.2 13 0.00045 31.4 2.1 35 36-70 77-111 (308)
88 2gxg_A 146AA long hypothetical 38.5 27 0.00091 24.2 3.2 26 32-57 120-145 (146)
89 1axn_A Annexin III; annexin fa 37.9 16 0.00055 31.1 2.3 35 36-70 93-127 (323)
90 1dm5_A Annexin XII E105K mutan 37.5 23 0.0008 29.9 3.3 37 35-71 86-122 (315)
91 1yii_A Annexin A5, annexin V, 37.3 17 0.00059 30.7 2.4 36 36-71 89-124 (320)
92 2xzm_M RPS18E; ribosome, trans 36.6 44 0.0015 26.5 4.5 19 31-49 58-76 (155)
93 2lhb_A Hemoglobin V (cyano Met 35.9 78 0.0027 23.1 5.6 42 24-65 1-42 (149)
94 2e1d_A Transaldolase; pentose 35.8 30 0.001 30.1 3.7 26 39-64 302-327 (331)
95 3cq0_A Putative transaldolase 35.6 37 0.0013 29.7 4.3 28 38-65 307-334 (339)
96 3tkf_A Transaldolase; structur 34.4 31 0.0011 30.5 3.6 25 39-63 320-344 (345)
97 1w3w_A Annexin A8; coagulation 33.3 38 0.0013 28.9 3.9 38 34-71 94-131 (327)
98 3cwn_A Transaldolase B; direct 33.1 33 0.0011 30.0 3.6 24 40-63 313-336 (337)
99 1it2_A Hemoglobin; hagfish, de 32.7 90 0.0031 22.9 5.5 42 24-65 1-42 (146)
100 3m16_A Transaldolase; dimer, m 31.3 39 0.0013 29.7 3.7 26 39-64 300-325 (329)
101 2oqr_A Sensory transduction pr 30.2 68 0.0023 23.7 4.4 47 32-78 155-210 (230)
102 3j20_O 30S ribosomal protein S 29.8 65 0.0022 25.4 4.4 18 31-48 51-68 (148)
103 1p2f_A Response regulator; DRR 29.4 84 0.0029 23.0 4.8 46 33-78 145-197 (220)
104 1n00_A Annexin GH1; membrane-b 29.2 27 0.00092 29.6 2.3 37 36-72 91-127 (321)
105 1x3u_A Transcriptional regulat 29.0 53 0.0018 20.9 3.2 42 33-76 16-59 (79)
106 3cet_A Conserved archaeal prot 29.0 77 0.0026 28.0 5.2 70 2-76 192-271 (334)
107 1lj9_A Transcriptional regulat 29.0 85 0.0029 21.6 4.5 27 32-58 113-139 (144)
108 3chj_A Alpha-14 giardin; calci 28.7 49 0.0017 28.5 3.8 36 36-72 13-48 (337)
109 2crw_A ARF GAP 3, ADP-ribosyla 28.3 28 0.00095 27.5 2.1 48 33-80 77-132 (149)
110 3nrv_A Putative transcriptiona 28.1 46 0.0016 23.2 3.0 24 32-55 124-147 (148)
111 4evf_A Alpha-1 giardin, giardi 27.3 55 0.0019 27.2 3.8 32 36-69 5-36 (295)
112 2xb0_X Chromo domain-containin 27.2 47 0.0016 28.4 3.4 26 32-57 169-195 (270)
113 3hjz_A Transaldolase B; parach 26.9 51 0.0018 28.9 3.7 26 39-64 297-322 (334)
114 2p57_A GTPase-activating prote 26.8 42 0.0014 26.4 2.8 48 33-80 85-140 (144)
115 2ykz_A Cytochrome C'; electron 26.6 1.8E+02 0.0063 21.0 7.3 69 3-73 39-110 (127)
116 3iz6_M 40S ribosomal protein S 26.5 39 0.0013 26.8 2.6 18 31-48 56-73 (152)
117 1kgs_A DRRD, DNA binding respo 26.5 83 0.0028 23.0 4.3 45 33-77 151-204 (225)
118 1je8_A Nitrate/nitrite respons 25.2 1.1E+02 0.0036 20.4 4.3 44 31-76 19-64 (82)
119 4hbl_A Transcriptional regulat 24.5 80 0.0027 22.2 3.8 27 31-57 121-147 (149)
120 4ioe_A Secreted protein ESXB; 24.3 1.5E+02 0.0053 19.3 6.5 50 7-61 24-80 (93)
121 2k6o_A Cathelicidin antimicrob 24.1 90 0.0031 19.8 3.5 23 40-62 4-26 (37)
122 3bj6_A Transcriptional regulat 24.0 98 0.0034 21.5 4.2 24 33-56 125-148 (152)
123 2hzd_A Transcriptional enhance 24.0 25 0.00087 25.5 1.0 22 28-49 3-24 (82)
124 1b67_A Protein (histone HMFA); 23.4 68 0.0023 21.0 3.0 35 31-65 17-55 (68)
125 1ys7_A Transcriptional regulat 23.3 1.2E+02 0.0039 22.3 4.6 46 33-78 159-213 (233)
126 1s05_A Cytochrome C-556, C556; 23.3 2.2E+02 0.0077 20.8 6.4 35 34-72 76-110 (129)
127 2gwr_A DNA-binding response re 23.2 1.1E+02 0.0039 22.9 4.6 47 33-79 153-208 (238)
128 1hbw_A Regulatory protein GAL4 23.1 50 0.0017 22.8 2.3 29 50-81 25-53 (57)
129 3r0j_A Possible two component 22.6 79 0.0027 24.0 3.7 46 33-78 176-230 (250)
130 1q06_A Transcriptional regulat 22.5 1.3E+02 0.0045 22.1 4.8 44 32-75 37-87 (135)
131 3m1m_A ORF904; primase, polyme 22.4 31 0.0011 30.9 1.5 40 35-84 221-274 (335)
132 3u5c_S 40S ribosomal protein S 22.4 39 0.0013 26.6 1.9 18 31-48 58-75 (146)
133 3tb5_A Methionine aminopeptida 22.2 1.5E+02 0.0053 23.4 5.5 45 35-79 6-51 (264)
134 3de8_A Soluble cytochrome B562 21.8 2.1E+02 0.0073 20.0 7.9 69 3-74 24-93 (106)
135 1m9i_A Annexin VI; calcium-bin 21.7 45 0.0016 31.6 2.5 34 35-68 364-397 (672)
136 3chj_A Alpha-14 giardin; calci 21.6 1E+02 0.0035 26.5 4.5 38 36-73 166-206 (337)
137 3kp7_A Transcriptional regulat 21.4 1.2E+02 0.004 21.3 4.1 25 32-56 123-147 (151)
138 3fxb_A Trap dicarboxylate tran 21.2 1.8E+02 0.0061 24.0 5.8 42 33-74 282-323 (326)
139 3bdd_A Regulatory protein MARR 21.0 65 0.0022 22.0 2.6 22 33-54 117-138 (142)
140 1v6z_A Hypothetical protein TT 20.9 53 0.0018 26.6 2.5 15 31-45 183-197 (228)
141 1zym_A Enzyme I; phosphotransf 20.8 1E+02 0.0035 25.6 4.2 28 35-62 36-63 (258)
142 3g3z_A NMB1585, transcriptiona 20.3 90 0.0031 21.6 3.3 21 34-54 117-137 (145)
143 3bpv_A Transcriptional regulat 20.0 84 0.0029 21.4 3.0 24 32-55 113-136 (138)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.95 E-value=1.3e-09 Score=75.85 Aligned_cols=56 Identities=36% Similarity=0.497 Sum_probs=47.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH----HhhhhhhhcCCCCCCC
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN----LKKKAFEDAGLPIQQQ 87 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~----lKrK~~edag~p~~~~ 87 (182)
..+.||++|.+.|..+|..||.+|.+||.+|.+||..|||.+ ++++.-. |++....
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~--g~~~~~~ 67 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC--GLDKETP 67 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS--CTTCCCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc--CCCCCcc
Confidence 468999999999999999999999999999999999999997 4554433 7765543
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.93 E-value=6.9e-10 Score=79.83 Aligned_cols=52 Identities=21% Similarity=0.444 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhhhh
Q psy8149 28 SPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFED 79 (182)
Q Consensus 28 s~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~ed 79 (182)
....+.||++|...|.+||.+||++|.+|+++|.+||..|+|.+-.+--++|
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d 66 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIED 66 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCC
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcccc
Confidence 3446899999999999999999999999999999999999999987653333
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=2.4e-09 Score=74.51 Aligned_cols=56 Identities=27% Similarity=0.494 Sum_probs=47.8
Q ss_pred CCCCCHHHHHHHHHHHHHhh------hhHHHHHHHhhhhhHHHHHHHHhhhhhh--hcCCCCCC
Q psy8149 31 GNKWTAEDIEMLKETVRKFG------DELVIISDRIKDRTISQIKSNLKKKAFE--DAGLPIQQ 86 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg------~dL~kIS~~Ik~RTv~QIKs~lKrK~~e--dag~p~~~ 86 (182)
.+.||++|.+.|+++|..|| .+|.+||.+|.+||..|+|.+-.+-+.. ..|++++.
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~~pg 71 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIPVSG 71 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSCCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 57999999999999999999 8999999999999999999887544332 46777654
No 4
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.74 E-value=1.6e-08 Score=68.19 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHhhhhh
Q psy8149 30 SGNKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKSNLKKKAF 77 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs~lKrK~~ 77 (182)
..++||++|-+.|+++|.+|| .+|.+||.+|.+||..|+|.+-.+-++
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 457999999999999999999 699999999999999999998876554
No 5
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.74 E-value=1.1e-08 Score=68.97 Aligned_cols=44 Identities=20% Similarity=0.395 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhh-hhhHHHHHHHHhh
Q psy8149 31 GNKWTAEDIEMLKETVRKFG-DELVIISDRIK-DRTISQIKSNLKK 74 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik-~RTv~QIKs~lKr 74 (182)
.++||++|-+.|+++|.+|| .+|.+||.+|. +||..|+|.+-.+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~ 54 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK 54 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHH
Confidence 57899999999999999999 89999999999 9999999998754
No 6
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.73 E-value=1.1e-08 Score=87.60 Aligned_cols=55 Identities=22% Similarity=0.393 Sum_probs=46.1
Q ss_pred hhhccccCCC-CCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q psy8149 18 LTLQLHSTPD-SPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL 72 (182)
Q Consensus 18 LTmqLh~~~d-s~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l 72 (182)
+.-.+.+..- ....++||++|+..|..|+.+||.||..|+.+|.+||+.|||++-
T Consensus 119 ~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY 174 (235)
T 2iw5_B 119 GIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF 174 (235)
T ss_dssp TTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHH
T ss_pred hcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHH
Confidence 3334455333 445689999999999999999999999999999999999999874
No 7
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=3.6e-08 Score=67.07 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=40.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q psy8149 28 SPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN 71 (182)
Q Consensus 28 s~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~ 71 (182)
......||++|++.|.+++..||.+|.+|+..|.+||+.|++..
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~ 52 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLY 52 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHH
Confidence 33468999999999999999999999999999999999999754
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.61 E-value=3.4e-08 Score=64.25 Aligned_cols=44 Identities=30% Similarity=0.468 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
.++||.+|-+.|.++|.+||. +|..||..+..||..|+|..-+.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 479999999999999999999 99999999999999999987544
No 9
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.59 E-value=7.9e-08 Score=88.85 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=42.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q psy8149 28 SPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL 72 (182)
Q Consensus 28 s~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l 72 (182)
+.-+.+||++|+..|+.+|.+||+||..|+++|++||+.|||++.
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy 421 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF 421 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHH
Confidence 445689999999999999999999999999999999999999986
No 10
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.57 E-value=9.7e-08 Score=67.81 Aligned_cols=45 Identities=22% Similarity=0.505 Sum_probs=40.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh----hhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 29 PSGNKWTAEDIEMLKETVRKFG----DELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 29 ~~~~KWTdeEiemLr~aV~rFg----~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
...+.||.+|..+|..||..|+ ++|.+|++.+ .||+.|||.+.|.
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~ 54 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQ 54 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHH
Confidence 3457899999999999999996 6799999999 7999999998764
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.55 E-value=4e-08 Score=64.05 Aligned_cols=43 Identities=26% Similarity=0.442 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lK 73 (182)
.++||++|-+.|.++|..||. +|..||..|..||..|+|..-.
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHH
Confidence 479999999999999999997 6999999999999999998754
No 12
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=8.8e-08 Score=65.88 Aligned_cols=41 Identities=12% Similarity=0.451 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHH-hhhhhHHHHHHH
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDR-IKDRTISQIKSN 71 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~-Ik~RTv~QIKs~ 71 (182)
...||++|+..|.++|..||.||.+|+.+ |.+||+.||...
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f 50 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITF 50 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHH
Confidence 57999999999999999999999999996 999999999753
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.51 E-value=9e-08 Score=64.00 Aligned_cols=45 Identities=29% Similarity=0.480 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 30 SGNKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
..++||++|-+.|+++|.+|| .+|..||..+..||..|+|..-..
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 52 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLR 52 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 357999999999999999999 599999999999999999987653
No 14
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.82 E-value=2.3e-08 Score=72.65 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL 72 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l 72 (182)
..+.||++|.+.|..+|..||.+|..||.+|.+||..|||..-
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~ 57 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFY 57 (89)
Confidence 3689999999999999999999999999999999999999864
No 15
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.44 E-value=1.6e-07 Score=61.70 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhh--hhhHHHHHHHH
Q psy8149 31 GNKWTAEDIEMLKETVRKFG-DELVIISDRIK--DRTISQIKSNL 72 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik--~RTv~QIKs~l 72 (182)
.++||++|-+.|.++|.+|| ..|..|+..+. .||..|+|..-
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw 46 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRW 46 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHH
Confidence 37999999999999999999 59999999999 99999999753
No 16
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.41 E-value=1.5e-07 Score=67.09 Aligned_cols=44 Identities=14% Similarity=0.269 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhh----hhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 31 GNKWTAEDIEMLKETVRKFG----DELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg----~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
.+.||.+|-.+|+.||..|| ++|.+|+.+|..||..|||.+-+.
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~ 65 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL 65 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Confidence 47899999999999999998 889999999999999999998763
No 17
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.39 E-value=2.4e-07 Score=63.92 Aligned_cols=47 Identities=32% Similarity=0.518 Sum_probs=38.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhh--hhhHHHHHHHH
Q psy8149 26 PDSPSGNKWTAEDIEMLKETVRKFGD-ELVIISDRIK--DRTISQIKSNL 72 (182)
Q Consensus 26 ~ds~~~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik--~RTv~QIKs~l 72 (182)
++..-.++||+||-+.|+++|.+||. +|..|+..+. .||-.|+|..-
T Consensus 6 ~~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 6 TNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHH
Confidence 33334579999999999999999996 8999999965 99999999764
No 18
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.39 E-value=4.5e-07 Score=67.33 Aligned_cols=46 Identities=17% Similarity=0.422 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh----hhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 29 PSGNKWTAEDIEMLKETVRKFG----DELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 29 ~~~~KWTdeEiemLr~aV~rFg----~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
++.+.||.+|-..|+.||..|| ++|.+|+.+|..||..|||.+-+.
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~ 55 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI 55 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Confidence 3457999999999999999995 789999999999999999998764
No 19
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.38 E-value=4e-07 Score=64.96 Aligned_cols=42 Identities=33% Similarity=0.483 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK 73 (182)
.+.||+||-+.|..++.+||..|.+||..+ .||..|||..-+
T Consensus 23 k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 689999999999999999999999999999 999999998654
No 20
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=6e-07 Score=61.09 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
.+.||.+|-+.|..++..||.+|.+||. +-.||..|+|.+-+.
T Consensus 9 k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~ 51 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEF 51 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHH
Confidence 5789999999999999999999999999 667999999987654
No 21
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=5.7e-07 Score=61.84 Aligned_cols=45 Identities=24% Similarity=0.466 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 30 SGNKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
-.++||++|-+.|+.+|.+|| .+|.+|+.+|..||..|+|..-..
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYE 53 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 357999999999999999999 799999999999999999987655
No 22
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.30 E-value=4.9e-07 Score=63.50 Aligned_cols=42 Identities=17% Similarity=0.426 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhHHHHHHH-hhhhhHHHHHHH
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGDELVIISDR-IKDRTISQIKSN 71 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~-Ik~RTv~QIKs~ 71 (182)
.-..||++|+..|.+||..||.||.+|+.+ |.+||+.||...
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f 49 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEY 49 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHH
Confidence 346899999999999999999999999995 999999999864
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.29 E-value=5.5e-07 Score=68.01 Aligned_cols=47 Identities=28% Similarity=0.416 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKA 76 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~ 76 (182)
..++||++|-+.|+.+|.+||.+|..|+..+.+||..|+|..-++.+
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 45899999999999999999999999999999999999999877654
No 24
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.29 E-value=7.1e-07 Score=65.55 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 32 NKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
++||++|-++|+.+|.+||. +|..||..|.+||..|+|..-.+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH
Confidence 69999999999999999996 89999999999999999987654
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.27 E-value=5.9e-07 Score=61.74 Aligned_cols=43 Identities=28% Similarity=0.401 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhh--hhhHHHHHHHHh
Q psy8149 31 GNKWTAEDIEMLKETVRKFG-DELVIISDRIK--DRTISQIKSNLK 73 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik--~RTv~QIKs~lK 73 (182)
.++||++|-+.|+.+|.+|| ..|..|+..+. .||..|+|..-.
T Consensus 10 r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~ 55 (69)
T 1ity_A 10 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWR 55 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHH
Confidence 58999999999999999999 59999999999 999999998644
No 26
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.25 E-value=1.1e-06 Score=63.26 Aligned_cols=45 Identities=7% Similarity=0.229 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhh----hHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGD----ELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~----dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
....||++|..+|+.||..|+. +|.+|+++|.+||+.+++.+-+.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~ 55 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYME 55 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3568999999999999999974 69999999999999999976653
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.24 E-value=8.8e-07 Score=64.26 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK 73 (182)
.+.||++|-+.|..+|..||..|..||..+.+||-.|||..-+
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~ 98 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWN 98 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHH
Confidence 6799999999999999999999999999999999999998654
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.21 E-value=1.3e-06 Score=65.87 Aligned_cols=57 Identities=28% Similarity=0.468 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhhhhhhhcCCCCCCCC
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQV 88 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKrK~~edag~p~~~~~ 88 (182)
.+.||++|-+.|.++|..||..|.+||..+..||-.|||..-+ .+...-|+|.....
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~-~l~~k~~~p~~~~~ 118 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWV-TISNKLGIPQTQQM 118 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHH-HHHHHTTC------
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHH-HHHHhcCCCCCCCC
Confidence 5799999999999999999999999999999999999998864 45556787776533
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.20 E-value=1.7e-06 Score=63.51 Aligned_cols=43 Identities=21% Similarity=0.422 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK 73 (182)
.+.||++|-+.|..+|..||..|.+||..+..||-.|||..-+
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~ 95 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWM 95 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHH
Confidence 5899999999999999999999999999999999999998754
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.19 E-value=9.7e-07 Score=64.04 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHhhh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLKKK 75 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lKrK 75 (182)
.++||++|-++|+.+|.+||. +|..||..|.+||..|+|..-.+.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 479999999999999999997 699999999999999999877664
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.11 E-value=2.7e-06 Score=63.94 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
.++||++|-++|..+|..||. +|..|+..+..||..|+|..-++
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence 689999999999999999996 69999999999999999988765
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.06 E-value=2.7e-06 Score=63.92 Aligned_cols=43 Identities=19% Similarity=0.421 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK 73 (182)
.+.||++|-+.|..++..||.+|.+||..+.+||-.|||..-+
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~ 121 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWN 121 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999999999998654
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.96 E-value=2e-06 Score=65.20 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhh-hhHHHHHHHhhhhhHHHHHHHHhhhh
Q psy8149 31 GNKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKSNLKKKA 76 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg-~dL~kIS~~Ik~RTv~QIKs~lKrK~ 76 (182)
.|+||.+|-+.|+.+|..|| .+|..||..|.+||..|+|..-.+.+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 37999999999999999999 68999999999999999998877644
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.93 E-value=5.2e-06 Score=62.84 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK 73 (182)
.+.||++|-+.|..+|..||..|..||..+..||-.|||..-.
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~ 96 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWN 96 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999998643
No 35
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.91 E-value=8.7e-06 Score=59.17 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHhhh-hHHHHHHH----hhhhhHHHHHHHHh
Q psy8149 32 NKWTAEDIEMLKETVRKFGD-ELVIISDR----IKDRTISQIKSNLK 73 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~-dL~kIS~~----Ik~RTv~QIKs~lK 73 (182)
.+||++|.+.|+.+|.+||. .|..|+.. +..||-.|||..-+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWr 47 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWK 47 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHH
Confidence 37999999999999999999 99999996 88999999997543
No 36
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.90 E-value=8.6e-06 Score=57.33 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=39.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhHHHHHH---HhhhhhHHHHHHHH
Q psy8149 28 SPSGNKWTAEDIEMLKETVRKFGDELVIISD---RIKDRTISQIKSNL 72 (182)
Q Consensus 28 s~~~~KWTdeEiemLr~aV~rFg~dL~kIS~---~Ik~RTv~QIKs~l 72 (182)
+....+||+||.+.|+++|++||.-|..|+. ....||...||..-
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~ 52 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKY 52 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHH
Confidence 3446899999999999999999999999995 67899999999643
No 37
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.86 E-value=7.8e-06 Score=60.28 Aligned_cols=41 Identities=15% Similarity=0.329 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN 71 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~ 71 (182)
-..||++|++.|.+++..||.|+.+|++.|.+||+.|+-..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~ 83 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLY 83 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHH
Confidence 35899999999999999999999999999999999998643
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.85 E-value=1.1e-05 Score=62.41 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK 73 (182)
.+.||++|.+.|..++..||..|..||..+..||-.|||..-+
T Consensus 110 ~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~ 152 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWN 152 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999999999998754
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.74 E-value=2.8e-05 Score=60.16 Aligned_cols=44 Identities=23% Similarity=0.422 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
.+.||++|-+.|..+|..||. +|..||..+..||..|+|..-+.
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 102 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 102 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHH
Confidence 689999999999999999996 79999999999999999987654
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.68 E-value=1.8e-05 Score=60.05 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhhh-hHHHHHHHh----hhhhHHHHHHHH
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGD-ELVIISDRI----KDRTISQIKSNL 72 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~-dL~kIS~~I----k~RTv~QIKs~l 72 (182)
..++||+||.+.|+++|.+||. .|..|+... ..||-.+||..-
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrW 59 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKW 59 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHH
Confidence 3589999999999999999999 999999976 799999999754
No 41
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=97.66 E-value=9.5e-05 Score=52.10 Aligned_cols=46 Identities=26% Similarity=0.266 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhhh---HHHHHHHhh--hhhHHHHHHHHhh
Q psy8149 29 PSGNKWTAEDIEMLKETVRKFGDE---LVIISDRIK--DRTISQIKSNLKK 74 (182)
Q Consensus 29 ~~~~KWTdeEiemLr~aV~rFg~d---L~kIS~~Ik--~RTv~QIKs~lKr 74 (182)
...-+||+|.|++|.+||..+|-| ..+|.+.|. ..|..||+|||-|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 345799999999999999999977 679999987 4599999999965
No 42
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.65 E-value=4.1e-05 Score=59.44 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhh-hHHHHHHHh----hhhhHHHHHHHHh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGD-ELVIISDRI----KDRTISQIKSNLK 73 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~-dL~kIS~~I----k~RTv~QIKs~lK 73 (182)
.++||++|.+.|+++|.+||. .|..|+... ..||-.|||..-+
T Consensus 17 r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWr 64 (121)
T 2juh_A 17 RRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWK 64 (121)
T ss_dssp SCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHH
Confidence 579999999999999999999 999999997 7999999997543
No 43
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.64 E-value=4e-05 Score=59.62 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhhh-hHHHHHHHh----hhhhHHHHHHHHh
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGD-ELVIISDRI----KDRTISQIKSNLK 73 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~-dL~kIS~~I----k~RTv~QIKs~lK 73 (182)
..++||++|.+.|+++|.+||. .|..|+... ..||-.|||..-+
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWr 78 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWK 78 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHH
Confidence 3579999999999999999998 899999986 7999999996543
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.56 E-value=3.7e-06 Score=61.13 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhhh----hHHHHHHHhhhhhHHHHHHHH
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGD----ELVIISDRIKDRTISQIKSNL 72 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~----dL~kIS~~Ik~RTv~QIKs~l 72 (182)
+++.||.+|...|+.||..|.. +|.+|++.|..||+.+|+.+.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY 65 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 4678999999999999999966 599999999999999998764
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=96.90 E-value=0.00049 Score=59.31 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh------HHHHHHHhhhhhHHHHHHHHh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDE------LVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~d------L~kIS~~Ik~RTv~QIKs~lK 73 (182)
.++||+||-+.|.++|++||.. |+.||.++..||-.|||..-+
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~ 56 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFR 56 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHH
Confidence 4699999999999999999886 999999999999999997644
No 46
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.72 E-value=0.002 Score=48.10 Aligned_cols=50 Identities=26% Similarity=0.484 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHh-----hhhhHHHHHHH---HhhhhhhhcC
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRI-----KDRTISQIKSN---LKKKAFEDAG 81 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~I-----k~RTv~QIKs~---lKrK~~edag 81 (182)
+.||.+|.+-|-+.+++||-.|-.|++.- ..||+.+||.- |-|++....+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999 58999999984 5567766665
No 47
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.91 E-value=0.0013 Score=60.98 Aligned_cols=37 Identities=22% Similarity=0.510 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQI 68 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QI 68 (182)
..||++|+..|.+++..||.|+.+|...|.+||+.+|
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~ 226 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASL 226 (482)
T ss_dssp -------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHH
Confidence 4899999999999999999999999999999999998
No 48
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.71 E-value=0.02 Score=45.36 Aligned_cols=39 Identities=18% Similarity=0.461 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHhh---hhHHHHHHH--hhhhhHHHHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFG---DELVIISDR--IKDRTISQIKS 70 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg---~dL~kIS~~--Ik~RTv~QIKs 70 (182)
..||+.|+..|..|+.||| ++|..|.+. +..||...|+.
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH
Confidence 4799999999999999999 469999876 56899999986
No 49
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=93.78 E-value=0.13 Score=36.03 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHH----hhh------hHHHHHHHhh----hhhHHHHHHHHh
Q psy8149 31 GNKWTAEDIEMLKETVRK----FGD------ELVIISDRIK----DRTISQIKSNLK 73 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~r----Fg~------dL~kIS~~Ik----~RTv~QIKs~lK 73 (182)
..+||++|+-.|.++... |.+ .|..||+.|. .||..|.+...+
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~ 60 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWR 60 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 479999999999999864 533 7999999998 699999988654
No 50
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.52 E-value=0.12 Score=38.71 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHhh-----hhhHHHHHHH---Hhhhhhhh
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRIK-----DRTISQIKSN---LKKKAFED 79 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik-----~RTv~QIKs~---lKrK~~ed 79 (182)
..||-+|.+-|-+.+++|.=+|--|.+.-. .||+-++|.. |-||+.+.
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999974 7999999975 34454443
No 51
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.34 E-value=0.11 Score=45.54 Aligned_cols=47 Identities=17% Similarity=0.372 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHhhh-hHHHHHHHhhhhhHHHHHHHHhhhhhhhc
Q psy8149 32 NKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIKSNLKKKAFEDA 80 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~-dL~kIS~~Ik~RTv~QIKs~lKrK~~eda 80 (182)
+-||-.|-..|..|+.+||+ ||..|+..|..+|..+|+...+ +|-+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~--vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA--VFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH--HHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHH--HHHHh
Confidence 57999999999999999999 5999999999999999988764 44443
No 52
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=82.82 E-value=0.75 Score=41.53 Aligned_cols=49 Identities=16% Similarity=0.358 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHhhhh-HHHHHHHhh-hhhHHHHHHHHhhhhhhhcCC
Q psy8149 32 NKWTAEDIEMLKETVRKFGDE-LVIISDRIK-DRTISQIKSNLKKKAFEDAGL 82 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~d-L~kIS~~Ik-~RTv~QIKs~lKrK~~edag~ 82 (182)
+.|+-.|-..|..|..+||+| +..|+..|. ++|..+|+.-. ++|=+.+=
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~--~vFw~Ry~ 174 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYA--KAFWSNIE 174 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHH--HHHHHTCS
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHH--HHHHHhhh
Confidence 579999999999999999998 999999999 99999999655 35665553
No 53
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=77.54 E-value=0.95 Score=38.88 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHhhh---hHHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGD---ELVII 56 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~---dL~kI 56 (182)
+-||+.||-.|..|+.|||+ +|+.|
T Consensus 4 ~~ltekEiR~l~Ra~~kfG~~~~R~e~I 31 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKFGNLKEILDEL 31 (270)
T ss_dssp CCCCHHHHHHHHHHHHHHSSCTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46999999999999999995 45555
No 54
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=74.84 E-value=4 Score=30.80 Aligned_cols=48 Identities=19% Similarity=0.425 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHhhh---hHHHHHHHhhhhhHHHHHHHHhh--hhhhhc
Q psy8149 33 KWTAEDIEMLKETVRKFGD---ELVIISDRIKDRTISQIKSNLKK--KAFEDA 80 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~---dL~kIS~~Ik~RTv~QIKs~lKr--K~~eda 80 (182)
-||.+|=..+..+-++=|. -|..||..+++|+..||+.-.+. |+|+.+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~ 87 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTA 87 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHC
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 4998887777777777765 79999999999999999987664 566544
No 55
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=73.88 E-value=5.3 Score=34.93 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhh----hHHHHHH------------HhhhhhHHHHHHHH
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGD----ELVIISD------------RIKDRTISQIKSNL 72 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~----dL~kIS~------------~Ik~RTv~QIKs~l 72 (182)
.+--||++|.-.|.-.|.+||= .|++|.. -|+.||..+|..+.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 3567999999999999999986 5999983 57789999887654
No 56
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=63.18 E-value=6.8 Score=26.17 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHh--------hhh-HHHHHH-HhhhhhHHHHHHHHhhhh
Q psy8149 32 NKWTAEDIEMLKETVRKF--------GDE-LVIISD-RIKDRTISQIKSNLKKKA 76 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rF--------g~d-L~kIS~-~Ik~RTv~QIKs~lKrK~ 76 (182)
.++|++|=..|.+-|.++ |.. |..|++ .+-.+|-...|..-+|++
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 479999999999999999 644 899999 799999999999888764
No 57
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa}
Probab=61.80 E-value=6.2 Score=37.83 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhH
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTI 65 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv 65 (182)
...|+|+ ..++|+.+|..+|..|++.|+.|-.
T Consensus 647 ~~~~~~~---~~~~a~~~F~~~L~~ie~~I~~RN~ 678 (698)
T 3vf1_A 647 DNLFGDA---AAHAAMAKFKSNLANITKQITERNQ 678 (698)
T ss_dssp TCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCH---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3579975 5799999999999999999999983
No 58
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla}
Probab=61.60 E-value=6.1 Score=39.66 Aligned_cols=32 Identities=31% Similarity=0.590 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhH
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTI 65 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv 65 (182)
...|||++ .++|+.+|..+|..|+..|+.|-.
T Consensus 1015 ~~~~~d~~---~~~a~~~F~~~L~~i~~~I~~RN~ 1046 (1066)
T 3dy5_A 1015 ATAWEDKD---ALDAINRFQDKLEDISKKIKQRNE 1046 (1066)
T ss_dssp TSCCCSHH---HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCHH---HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35799864 599999999999999999999873
No 59
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A
Probab=60.99 E-value=6.6 Score=37.66 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhH
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTI 65 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv 65 (182)
...|||+ ..++|+.+|..+|..|+..|+.|-.
T Consensus 645 ~~~~~~~---~~~~a~~~F~~~L~~ie~~I~~RN~ 676 (696)
T 3fg1_A 645 ATAWEDK---DALDAINRFQDKLEDISKKIKQRNE 676 (696)
T ss_dssp TCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCH---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3579985 4799999999999999999999983
No 60
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=60.39 E-value=14 Score=28.51 Aligned_cols=47 Identities=26% Similarity=0.471 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHH-h--hhhHHHHHHHhhhhhHHHHHHHHhhh----hh----hhcCCCCCCCC
Q psy8149 31 GNKWTAEDIEMLKETVRK-F--GDELVIISDRIKDRTISQIKSNLKKK----AF----EDAGLPIQQQV 88 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~r-F--g~dL~kIS~~Ik~RTv~QIKs~lKrK----~~----edag~p~~~~~ 88 (182)
-+-|||+|++.|++.|.. | +.||.+ +++..+||. .| -..|+|++-+-
T Consensus 45 ~~~Lt~~ei~~l~~~i~~~~~ve~dLrr-----------~~~~nIkRL~~I~~YRG~RH~~GLPVRGQR 102 (126)
T 2vqe_M 45 VKDLTEAEVVRLREYVENTWKLEGELRA-----------EVAANIKRLMDIGCYRGLRHRRGLPVRGQR 102 (126)
T ss_dssp GGGCCHHHHHHHHHHHHTTSCCHHHHHH-----------HHHHHHHHHHHTTCHHHHHHHTTCCSSSCC
T ss_pred cCcCCHHHHHHHHHHHHHhCcchhHHHH-----------HHHHHHHHHHHHHHHhhhhhccCCcCCCcc
Confidence 368999999999999996 5 667764 444555543 33 34699999644
No 61
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa}
Probab=60.18 E-value=7.4 Score=36.65 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTI 65 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv 65 (182)
..|+|+ ..++|+.+|..+|..|+..|+.|-.
T Consensus 523 ~~f~d~---~~~~a~~~F~~~L~~ie~~I~~RN~ 553 (573)
T 3rde_A 523 EYFSGP---GPKAVLTKFREELAALDKDIEVRNA 553 (573)
T ss_dssp CCSCSH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCH---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467765 4799999999999999999999974
No 62
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B
Probab=57.31 E-value=8.4 Score=36.96 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTI 65 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv 65 (182)
..|+|+ ..++|+.+|..+|..|+..|+.|-.
T Consensus 641 ~~f~d~---~~~~a~~~F~~~L~~ie~~I~~RN~ 671 (691)
T 3v98_A 641 EHFIEK---PVKEAMARFRKNLEAIVSVIAERNE 671 (691)
T ss_dssp CSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCH---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467775 4799999999999999999999983
No 63
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens}
Probab=57.21 E-value=6.3 Score=36.83 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhH
Q psy8149 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTI 65 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv 65 (182)
.|+.++ ..++|+.||..+|..|+..|..|-.
T Consensus 459 ~~f~d~--~~~~a~~~F~~~L~~ie~~I~~RN~ 489 (541)
T 3d3l_A 459 KYFSGP--KPKAVLNQFRTDLEKLEKEITARNE 489 (541)
T ss_dssp CSCCSH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCh--HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 566553 5799999999999999999999873
No 64
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=57.08 E-value=10 Score=29.62 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHhh-hhHHHHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFG-DELVIISD 58 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg-~dL~kIS~ 58 (182)
--||++|=.+|.-+|-+|| ..|+.|-.
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 3599999999999999999 67877754
No 65
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=54.93 E-value=8.5 Score=32.60 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs 70 (182)
++|.+.|+.|++.||-|=..|-+++-.|+..|++.
T Consensus 5 ~~Da~~L~kA~kg~Gtde~~ii~IL~~rs~~qr~~ 39 (308)
T 2hyv_A 5 ERDALNIETAIKTKGVDEVTIVNILTNRSNAQRQD 39 (308)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHH
Confidence 57899999999999999999999999999988543
No 66
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A*
Probab=54.38 E-value=7.3 Score=37.06 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhH
Q psy8149 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTI 65 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv 65 (182)
.|+.++ ..++|+.||..+|..|+..|..|-.
T Consensus 612 ~~~~d~--~~~~a~~~F~~~L~~ie~~I~~rN~ 642 (662)
T 1lox_A 612 EYFSGP--EPRAVLEKFREELAIMDKEIEVRNE 642 (662)
T ss_dssp CCCCSH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCH--HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 576554 5789999999999999999999873
No 67
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=51.99 E-value=7.9 Score=32.84 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs 70 (182)
+.|.+.|+.|++-||-|-..|-+++-.||-.|++.
T Consensus 17 ~~Da~~L~~A~kG~Gtde~~lieIL~~rs~~q~~~ 51 (320)
T 1yii_A 17 RADAEALRKAMKGMGTDEETILKILTSRNNAQRQE 51 (320)
T ss_dssp HHHHHHHHHHHSSSSCCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHH
Confidence 68999999999999999999999999999988754
No 68
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=50.99 E-value=8.4 Score=32.68 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs 70 (182)
+.+.+.|+.|++.||-|-..|-+++-+||-.|++.
T Consensus 15 ~~DA~~L~~A~kG~Gtde~~lieIL~~rs~~q~~~ 49 (315)
T 1dm5_A 15 REDAETLRKAMKGIGTDEKSITHILATRSNAQRQQ 49 (315)
T ss_dssp HHHHHHHHHHHSSSSCCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHH
Confidence 68999999999999999999999999999988764
No 69
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ...
Probab=50.31 E-value=9.5 Score=37.65 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTIS 66 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~ 66 (182)
..|++++ ..++|+.||..+|..|+..|..|-..
T Consensus 770 ~~~~~d~--~~~~a~~rF~~~L~~Ie~~I~~RN~d 802 (839)
T 1f8n_A 770 PHWTSDS--KALQAFQKFGNKLKEIEEKLVRRNND 802 (839)
T ss_dssp TTSCSCH--HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4798765 46889999999999999999998764
No 70
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max}
Probab=50.13 E-value=9.6 Score=37.79 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTIS 66 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~ 66 (182)
..|++++ ..++|+.||..+|..|+..|..|-..
T Consensus 796 ~~~~~d~--~~~~a~~~F~~~L~~Ie~~I~~RN~~ 828 (864)
T 2iuk_A 796 PNWTTDK--KALEAFKRFGSKLTGIEGKINARNSD 828 (864)
T ss_dssp TTSCSCH--HHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cccccCH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4798765 36889999999999999999998764
No 71
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=50.04 E-value=8.3 Score=33.06 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs 70 (182)
+.|.+.|+.|++-||-|-..|-+++-+||-.|++.
T Consensus 24 ~~DA~~L~kA~kG~GtdE~~lieIL~~Rs~~q~~~ 58 (327)
T 1w3w_A 24 DPDAETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQ 58 (327)
T ss_dssp HHHHHHHHHHHSSSSCCHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHH
Confidence 78999999999999999999999999999988754
No 72
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=49.71 E-value=8 Score=32.97 Aligned_cols=35 Identities=17% Similarity=0.344 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs 70 (182)
+.|.+.|+.|++-||-|=..|-+++-.|+-.|++.
T Consensus 21 ~~Da~~L~kA~kG~Gtde~~li~IL~~rs~~qr~~ 55 (323)
T 1axn_A 21 SVDAEAIQKAIRGIGTDEKMLISILTERSNAQRQL 55 (323)
T ss_dssp HHHHHHHHHHHSSSSCCHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHH
Confidence 68999999999999999999999999999988653
No 73
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=49.55 E-value=13 Score=31.65 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q psy8149 35 TAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70 (182)
Q Consensus 35 TdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs 70 (182)
.+.|.+.|+.|++-||-|=..|-+++-.||-.|++.
T Consensus 19 ~~~Da~~L~kA~kG~GtdE~~li~IL~~rs~~qr~~ 54 (322)
T 2zhj_A 19 ATEDAQVLRKAMKGLGTDEDAIIGVLACRNTAQRQE 54 (322)
T ss_dssp HHHHHHHHHHHHSSSSCCHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHH
Confidence 378999999999999999999999999999988653
No 74
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=48.95 E-value=15 Score=26.22 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=33.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHh-hhhHHHHHHHhhhhhH
Q psy8149 28 SPSGNKWTAEDIEMLKETVRKF-GDELVIISDRIKDRTI 65 (182)
Q Consensus 28 s~~~~KWTdeEiemLr~aV~rF-g~dL~kIS~~Ik~RTv 65 (182)
.+....+|.+|...|-..+.+. +++|.+|-+.|++|.-
T Consensus 12 e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p 50 (90)
T 2jns_A 12 EDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREP 50 (90)
T ss_dssp TSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCc
Confidence 3445789999999999999999 7889999999998863
No 75
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=48.29 E-value=7.6 Score=33.04 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs 70 (182)
+.+.+.|+.|++-||-|-..|-+++-+||-.|++.
T Consensus 19 ~~DA~~L~~A~kG~Gtde~~lieIL~~rs~~q~~~ 53 (321)
T 1n00_A 19 SEDCEQLRKAFSGWGTNEGLIIDILGHRNAEQRNL 53 (321)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHcCCCHHHHHH
Confidence 68999999999999999999999999999988654
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=53.04 E-value=4 Score=29.29 Aligned_cols=41 Identities=17% Similarity=0.381 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHHhhh---hHHHHHHHhhhhhHHHHHHHHh
Q psy8149 32 NKWTAEDIEMLKETVRKFGD---ELVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~---dL~kIS~~Ik~RTv~QIKs~lK 73 (182)
-.||.+|=.-+..+.++=|. -|..||..+ +||..||+.-.+
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~ 58 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQ 58 (70)
Confidence 36999998888888888887 799999999 899999987654
No 77
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max}
Probab=46.89 E-value=11 Score=37.37 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHH
Q psy8149 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTIS 66 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~ 66 (182)
.|+.++ ..++|+.||..+|..|+..|..|-..
T Consensus 786 ~~~~d~--~~~~a~~~F~~~L~~Ie~~I~~RN~~ 817 (853)
T 2iuj_A 786 YWTSDA--GPLEAFKRFGKNLEEIEKKLIEKNND 817 (853)
T ss_dssp TSCSCH--HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 798765 46899999999999999999998754
No 78
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=46.54 E-value=32 Score=21.16 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhh
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKD 62 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~ 62 (182)
+||+..|..-|.+.-++++++.+.++.
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999888764
No 79
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=46.30 E-value=16 Score=27.73 Aligned_cols=47 Identities=26% Similarity=0.490 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--hhhHHHHHHHhhhhhHHHHHHHHhh----hhh----hhcCCCCCCCC
Q psy8149 31 GNKWTAEDIEMLKETVRKF--GDELVIISDRIKDRTISQIKSNLKK----KAF----EDAGLPIQQQV 88 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rF--g~dL~kIS~~Ik~RTv~QIKs~lKr----K~~----edag~p~~~~~ 88 (182)
-+.+||+|++.|++.|..| +.||.+ +++..+|| +.| -..|+|++-+-
T Consensus 44 ~~~Lt~~ei~~l~~~i~~~~ie~dLr~-----------~~~~dI~RL~~I~~yRG~RH~~GLpVRGQr 100 (114)
T 3r8n_M 44 ISELSEGQIDTLRDEVAKFVVEGDLRR-----------EISMSIKRLMDLGCYRGLRHRRGLPVRGQR 100 (114)
T ss_dssp STTCCHHHHHHHHHHHSSSCTTHHHHH-----------HHHHHHHHHHHHTCHHHHHHHTTSCCSSCC
T ss_pred cccCCHHHHHHHHHHHHHhcchHHHHH-----------HHHHHHHHHHHhceeeeecccCCCCCCCCC
Confidence 4689999999999999877 555543 44444444 334 35799998543
No 80
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=46.16 E-value=11 Score=32.67 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs 70 (182)
++|.+.|+.|++.||-|=..|-+++-.|+..|++.
T Consensus 45 ~~Da~~L~kA~kg~GtDE~~iI~IL~~rs~~Qr~~ 79 (346)
T 1hm6_A 45 SSDVEALHKAITVKGVDEATIIEILTKRTNAQRQQ 79 (346)
T ss_dssp HHHHHHHHHHHSSTTCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHhcCCHHHHHH
Confidence 68999999999999999999999999999887543
No 81
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=42.44 E-value=16 Score=21.84 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=13.9
Q ss_pred HHHHhhhhHHHHHHHhh
Q psy8149 45 TVRKFGDELVIISDRIK 61 (182)
Q Consensus 45 aV~rFg~dL~kIS~~Ik 61 (182)
+-+|||++|.+.|+-..
T Consensus 7 ~A~rYGReLRRMSDEF~ 23 (27)
T 2bzw_B 7 AAQRYGRELRRMSDEFE 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhHHHH
Confidence 45799999999998653
No 82
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=41.98 E-value=13 Score=31.59 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN 71 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~ 71 (182)
+.|...|+.|++.+|-|-..|-+++-+||-.||+.-
T Consensus 92 ~~DA~~L~~A~kg~Gtde~~lieIL~~Rs~~ql~~I 127 (322)
T 2zhj_A 92 LYDVQELRRAMKGAGTDEGCLIEILASRNPEEIRRI 127 (322)
T ss_dssp HHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCHHHHHHHHhcCCHHHHHHH
Confidence 689999999999999999999999999999998753
No 83
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=41.68 E-value=14 Score=24.74 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHHHhh----hhHHHHHHHhhhhhH
Q psy8149 31 GNKWTAEDIEMLKETVRKFG----DELVIISDRIKDRTI 65 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg----~dL~kIS~~Ik~RTv 65 (182)
..+|+.+=++.|++++.+|. +|.+..++|=|.+|+
T Consensus 21 ~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI 59 (70)
T 1ku5_A 21 AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTV 59 (70)
T ss_dssp CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEE
T ss_pred cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 46999999999999999995 456666776666654
No 84
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=41.48 E-value=40 Score=21.02 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhh--hhhHHHHHHHHhhhh
Q psy8149 30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIK--DRTISQIKSNLKKKA 76 (182)
Q Consensus 30 ~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik--~RTv~QIKs~lKrK~ 76 (182)
+-.++|+.|.+.|.. + .-|-....|++.+. .+|+......+++|+
T Consensus 8 ~~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 8 SKPLLTKREREVFEL-L-VQDKTTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 346899999999988 4 45778999999875 344444444444444
No 85
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=40.70 E-value=14 Score=32.06 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs 70 (182)
+.|...|+.|++.+|-|-..|-+++-+||-.||+.
T Consensus 117 ~~DA~~L~~AmkG~GTde~~LieIL~~Rsn~q~~~ 151 (346)
T 1hm6_A 117 QFDADELRAAMKGLGTDEDTLNEILASRTNREIRE 151 (346)
T ss_dssp HHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHhcCCHHHHHH
Confidence 57889999999999999999999999999988764
No 86
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=40.62 E-value=23 Score=25.32 Aligned_cols=25 Identities=4% Similarity=0.086 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVII 56 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kI 56 (182)
..|+++|++.|...+.++-+.|.+|
T Consensus 134 ~~l~~~e~~~l~~~l~~l~~~l~~~ 158 (159)
T 3s2w_A 134 SSFDDRQRREITNSLEIMFENGLKI 158 (159)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999888877764
No 87
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=40.17 E-value=13 Score=31.43 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs 70 (182)
+.+...|+.|++.+|-|-..|-+++-+||-.||+.
T Consensus 77 ~~DA~~L~~AmkG~Gtde~~LieIL~~Rs~~q~~~ 111 (308)
T 2hyv_A 77 QYDASELKASMKGLGTDEDSLIEIICSRTNQELQE 111 (308)
T ss_dssp HHHHHHHHHHTSTTCCCHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHhcCCHHHHHH
Confidence 67889999999999999999999999999888754
No 88
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=38.49 E-value=27 Score=24.21 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIIS 57 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS 57 (182)
..++++|++.|...+.++.+.++.|+
T Consensus 120 ~~l~~~e~~~l~~~l~~~~~~l~~~~ 145 (146)
T 2gxg_A 120 GDLSEDEVILVLDKISKILKRIEEIS 145 (146)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 36777888888877777776666654
No 89
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=37.93 E-value=16 Score=31.07 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs 70 (182)
+.+...|+.|++.+|-|-..|-+++-+||-.||+.
T Consensus 93 ~~DA~~L~~A~kG~Gtde~~lieIL~~Rs~~q~~~ 127 (323)
T 1axn_A 93 VFDAKQLKKSMKGAGTNEDALIEILTTRTSRQMKD 127 (323)
T ss_dssp HHHHHHHHHHHCSSSCCHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHhHHhcCCCHHHHHH
Confidence 46899999999999999999999999999988764
No 90
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=37.49 E-value=23 Score=29.90 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q psy8149 35 TAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN 71 (182)
Q Consensus 35 TdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~ 71 (182)
-+.|...|++|++.+|.|-+.+-+++-+||-.||+..
T Consensus 86 ~~~dA~~L~~A~kg~Gtde~~lieIL~tRs~~ql~~i 122 (315)
T 1dm5_A 86 DEFLAEQLHAAMKGLGTDKNALIDILCTQSNAQIHAI 122 (315)
T ss_dssp HHHHHHHHHHHHHSSSCCHHHHHHHHSSCCHHHHHHH
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhHhcCCHHHHHHH
Confidence 4678888999999999999999999999999999764
No 91
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=37.25 E-value=17 Score=30.72 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN 71 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~ 71 (182)
+.|...|+.|++.+|-|-..|-+++-+||-.||+.-
T Consensus 89 ~~DA~~L~~A~kg~Gtde~~lieIL~~Rs~~ql~~I 124 (320)
T 1yii_A 89 IFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNI 124 (320)
T ss_dssp HHHHHHHHHHHSSSSCCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHhHHHhcCCHHHHHHH
Confidence 889999999999999999999999999999998754
No 92
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=36.58 E-value=44 Score=26.55 Aligned_cols=19 Identities=5% Similarity=0.109 Sum_probs=16.9
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy8149 31 GNKWTAEDIEMLKETVRKF 49 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rF 49 (182)
-+.+||+||+.|+..|..+
T Consensus 58 ~~~Lt~~ei~~l~~~i~~p 76 (155)
T 2xzm_M 58 AGLLTEDQCNKITDLIADP 76 (155)
T ss_dssp SSCSCHHHHHHHHHHHHSH
T ss_pred cccCCHHHHHHHHHHHhCc
Confidence 4689999999999999973
No 93
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=35.93 E-value=78 Score=23.07 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=31.7
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhH
Q psy8149 24 STPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTI 65 (182)
Q Consensus 24 ~~~ds~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv 65 (182)
|..|+...--||++|++.+++.......+...|...+=.|--
T Consensus 1 ~~~~~~~~m~lt~~~~~~V~~sw~~v~~~~~~~g~~~~~rlF 42 (149)
T 2lhb_A 1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFF 42 (149)
T ss_dssp CCCSSSCCCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 445533334499999999999999998888888777776643
No 94
>2e1d_A Transaldolase; pentose phosphate pathway, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Mus musculus} SCOP: c.1.10.1 PDB: 2cwn_A 1f05_A
Probab=35.85 E-value=30 Score=30.15 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhh
Q psy8149 39 IEMLKETVRKFGDELVIISDRIKDRT 64 (182)
Q Consensus 39 iemLr~aV~rFg~dL~kIS~~Ik~RT 64 (182)
.+.|.++|++|..||+++-+.|+.|-
T Consensus 302 ~~~l~eGi~~F~~~~~~L~~~i~~~~ 327 (331)
T 2e1d_A 302 VEKLSDGIRKFAADAIKLERMLTERM 327 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999998763
No 95
>3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt, transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae}
Probab=35.63 E-value=37 Score=29.71 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhH
Q psy8149 38 DIEMLKETVRKFGDELVIISDRIKDRTI 65 (182)
Q Consensus 38 EiemLr~aV~rFg~dL~kIS~~Ik~RTv 65 (182)
-.+.|.++|++|..||+++-+.|+.|-.
T Consensus 307 a~~~l~eGi~~F~~~~~~L~~~i~~~~~ 334 (339)
T 3cq0_A 307 ATEKLSDGIRKFSADIEALYKLVEEKML 334 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999998753
No 96
>3tkf_A Transaldolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel/TIM barrel; HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB: 3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A
Probab=34.39 E-value=31 Score=30.50 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhh
Q psy8149 39 IEMLKETVRKFGDELVIISDRIKDR 63 (182)
Q Consensus 39 iemLr~aV~rFg~dL~kIS~~Ik~R 63 (182)
.+.|.++|++|.+|+.++-+.|+.|
T Consensus 320 ~ekl~eGIr~Fa~d~~~Le~~l~~~ 344 (345)
T 3tkf_A 320 THKLAEGIRLFTKDTIELENIIKQN 344 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5679999999999999999999876
No 97
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=33.26 E-value=38 Score=28.94 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHH
Q psy8149 34 WTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSN 71 (182)
Q Consensus 34 WTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~ 71 (182)
+.+.|...|++|++..|-|-..+-+++-+||-.||+..
T Consensus 94 ~~~~DA~~L~~A~~g~Gtde~~lieIL~tRs~~ql~~i 131 (327)
T 1w3w_A 94 PYRYEAKELHDAMKGLGTKEGVIIEILASRTKNQLREI 131 (327)
T ss_dssp TTHHHHHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHhCCHHHHHHH
Confidence 46899999999999999999999999999999999864
No 98
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt, transferase; 1.40A {Escherichia coli} PDB: 3kof_A 1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A
Probab=33.13 E-value=33 Score=29.97 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhh
Q psy8149 40 EMLKETVRKFGDELVIISDRIKDR 63 (182)
Q Consensus 40 emLr~aV~rFg~dL~kIS~~Ik~R 63 (182)
+.|.++|++|..||+++-+.|+.|
T Consensus 313 ell~eGi~~F~~~~~~L~~~i~~~ 336 (337)
T 3cwn_A 313 DKLAEGIRKFAIDQEKLEKMIGDL 336 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 458999999999999999999875
No 99
>1it2_A Hemoglobin; hagfish, deoxy form, oxygen storage/transport complex; HET: HEM; 1.60A {Eptatretus burgeri} SCOP: a.1.1.2 PDB: 1it3_A*
Probab=32.71 E-value=90 Score=22.86 Aligned_cols=42 Identities=19% Similarity=0.016 Sum_probs=32.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhH
Q psy8149 24 STPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTI 65 (182)
Q Consensus 24 ~~~ds~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv 65 (182)
|..|+.+.--||++|++.+++.......+...|...+=.|--
T Consensus 1 ~~~~~~~~m~Lt~~~~~~V~~sw~~v~~~~~~~g~~~~~rlF 42 (146)
T 1it2_A 1 PIIDQGPLPTLTDGDKKAINKIWPKIYKEYEQYSLNILLRFL 42 (146)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 344544444599999999999999999888888887777743
No 100
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural genomics, PSI-2, protein structure initiative; 2.79A {Oleispira antarctica} SCOP: c.1.10.1
Probab=31.29 E-value=39 Score=29.65 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhh
Q psy8149 39 IEMLKETVRKFGDELVIISDRIKDRT 64 (182)
Q Consensus 39 iemLr~aV~rFg~dL~kIS~~Ik~RT 64 (182)
.+.|.++|++|.+|+.++-+.|+.|-
T Consensus 300 ~ekl~eGIr~Fa~~~~~Le~~l~~~~ 325 (329)
T 3m16_A 300 HDKLADGIRRFAADQVTLESMLSKKI 325 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999888774
No 101
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=30.25 E-value=68 Score=23.67 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHHhhh--hHHHHHHHh-------hhhhHHHHHHHHhhhhhh
Q psy8149 32 NKWTAEDIEMLKETVRKFGD--ELVIISDRI-------KDRTISQIKSNLKKKAFE 78 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~--dL~kIS~~I-------k~RTv~QIKs~lKrK~~e 78 (182)
-..|..|.+.|+-.+...|. .-..|++.+ -.||+.--.+.++||+=.
T Consensus 155 ~~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~ 210 (230)
T 2oqr_A 155 ITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEA 210 (230)
T ss_dssp CCCCHHHHHHHHHHHHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCS
T ss_pred eecCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhh
Confidence 36899999999988887443 346687754 679999888899999743
No 102
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.78 E-value=65 Score=25.37 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy8149 31 GNKWTAEDIEMLKETVRK 48 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~r 48 (182)
-+.+||+||+.|++.|..
T Consensus 51 ~g~Lt~~ei~~i~~~i~~ 68 (148)
T 3j20_O 51 AGYLTDEQVKKIEEILAD 68 (148)
T ss_dssp TTBCCHHHHHHHHHHHHC
T ss_pred eccCCHHHHHHHHHHHhc
Confidence 468999999999999976
No 103
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=29.36 E-value=84 Score=23.03 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHhhh--hHHHHHHHhh-----hhhHHHHHHHHhhhhhh
Q psy8149 33 KWTAEDIEMLKETVRKFGD--ELVIISDRIK-----DRTISQIKSNLKKKAFE 78 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~--dL~kIS~~Ik-----~RTv~QIKs~lKrK~~e 78 (182)
..|..|.+.|+-.....|. ....|++.+. .||+..-.+.+.||+-.
T Consensus 145 ~Lt~rE~~vl~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 145 HLPKKEFEILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 5899999999988887664 3567888865 89999999999999843
No 104
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=29.16 E-value=27 Score=29.60 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL 72 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l 72 (182)
+.|...|++|++++|.|-..+-+++-+||-.||+...
T Consensus 91 ~~dA~~l~~A~kg~Gtde~~lieIL~tRs~~ql~~i~ 127 (321)
T 1n00_A 91 ERDALLANEATKRWTSSNQVLMEIACTRSANQLLHAR 127 (321)
T ss_dssp HHHHHHHHHHHSSSCSSCHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHhcCCHHHHHHHH
Confidence 6889999999999999999999999999999997643
No 105
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.99 E-value=53 Score=20.89 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHhhhhHHHHHHHhh--hhhHHHHHHHHhhhh
Q psy8149 33 KWTAEDIEMLKETVRKFGDELVIISDRIK--DRTISQIKSNLKKKA 76 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~dL~kIS~~Ik--~RTv~QIKs~lKrK~ 76 (182)
++|+.|.+.|.- + -.|-....|++.+. .+||......+++|+
T Consensus 16 ~L~~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGLPNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 356777777766 3 45778889998864 556655555555554
No 106
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=28.96 E-value=77 Score=27.95 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=48.9
Q ss_pred hhHhhHhhHHHHHhhhhhhc--cccCCCCCCCCCCCHHHHHHHHHHHHHhhhh--------HHHHHHHhhhhhHHHHHHH
Q psy8149 2 GDIFLAAGTAFNKLADLTLQ--LHSTPDSPSGNKWTAEDIEMLKETVRKFGDE--------LVIISDRIKDRTISQIKSN 71 (182)
Q Consensus 2 ~EIF~aAG~AF~kLgeLTmq--Lh~~~ds~~~~KWTdeEiemLr~aV~rFg~d--------L~kIS~~Ik~RTv~QIKs~ 71 (182)
.|-|-..+.|+.=||++.-. .|++.| |+-++.+ +-++..=+..|.| |..|++.|.++-+.+|+..
T Consensus 192 ~E~fATtaDa~~vLG~i~~~d~~~~taD---g~~k~~~--~~~~RLAr~vg~D~~~~~~~~~~~lA~~~~~~q~~~I~~a 266 (334)
T 3cet_A 192 SEYFAITADISVVLEKVTTEEYTCDTPD---GKGTDKR--SSLVRISKVLCSDLDQISEIDAENIAKNYYELWKELILEN 266 (334)
T ss_dssp CSSCCBHHHHHHHTTSSCGGGCCSCCTT---SCCCSHH--HHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHhCCCCcccccCcCcC---CccccHH--HHHHHHHHHhCCChhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 36688888999999988654 356666 3223322 1222233334777 9999999999999999999
Q ss_pred Hhhhh
Q psy8149 72 LKKKA 76 (182)
Q Consensus 72 lKrK~ 76 (182)
+.+-.
T Consensus 267 v~~v~ 271 (334)
T 3cet_A 267 VENVA 271 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98766
No 107
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=28.95 E-value=85 Score=21.59 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVIISD 58 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kIS~ 58 (182)
..++++|++.|...+.++.+.+.+.-+
T Consensus 113 ~~l~~~e~~~l~~~l~~l~~~l~~~~~ 139 (144)
T 1lj9_A 113 QGLSEVEISQLADYLVRMRKNVSEDWE 139 (144)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhHHHHHH
Confidence 368889999999988888776655433
No 108
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein; 1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Probab=28.67 E-value=49 Score=28.49 Aligned_cols=36 Identities=6% Similarity=0.063 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL 72 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l 72 (182)
+++.+.|+.|++-|+ |=..|-+++-.|+..|++...
T Consensus 13 ~~da~~L~kA~kg~~-de~~ii~IL~~rs~~Qr~~i~ 48 (337)
T 3chj_A 13 TAVVQKVVEACQDES-KRLDLIEIARSYPPNQLRNMQ 48 (337)
T ss_dssp HHHHHHHHHHHHCGG-GTTHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCC-CHHHHHHHHHcCCHHHHHHHH
Confidence 567899999999996 778888999999998877543
No 109
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.32 E-value=28 Score=27.47 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHH----HHHHh----hhhHHHHHHHhhhhhHHHHHHHHhhhhhhhc
Q psy8149 33 KWTAEDIEMLKE----TVRKF----GDELVIISDRIKDRTISQIKSNLKKKAFEDA 80 (182)
Q Consensus 33 KWTdeEiemLr~----aV~rF----g~dL~kIS~~Ik~RTv~QIKs~lKrK~~eda 80 (182)
+||++++++++. ...+| |.+-..|-+--..|....-|..|++++.++.
T Consensus 77 ~W~~~~l~~m~~~GN~~an~~~e~~~~~~~~i~~KY~s~~a~~Yr~~l~~~~~~~~ 132 (149)
T 2crw_A 77 NWSWFQLRCMQVGGNASASSFFHQHGCSTNDTNAKYNSRAAQLYREKIKSLASQAT 132 (149)
T ss_dssp CCCHHHHHHHHTTCHHHHHHHHHHHCCCCCCHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhHHHHHHHHhcCCCCcchhhCcCcHHHHHHHHHHHHHHHHHH
Confidence 699999998863 22222 2222234555566667778888888877764
No 110
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=28.06 E-value=46 Score=23.19 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVI 55 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~k 55 (182)
..|+++|++.|...+.++.+.+++
T Consensus 124 ~~l~~~e~~~l~~~l~~l~~~l~~ 147 (148)
T 3nrv_A 124 EEFEEAEKDQLFILLKKLRNKVDQ 147 (148)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhc
Confidence 468999999999998888777664
No 111
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding protein, membrane-binding protein, binding protein; 1.90A {Giardia intestinalis} PDB: 4evh_A
Probab=27.27 E-value=55 Score=27.23 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHH
Q psy8149 36 AEDIEMLKETVRKFGDELVIISDRIKDRTISQIK 69 (182)
Q Consensus 36 deEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIK 69 (182)
+++.+.|+.|++ |-|-..|-+++-.||-.|++
T Consensus 5 ~~da~~L~~A~k--Gtde~~li~IL~~rs~~qr~ 36 (295)
T 4evf_A 5 TDIANELKQAID--AKDEVQIAFIASEYSAESRE 36 (295)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHhCCCHHHHH
Confidence 478889999998 78999999999999988854
No 112
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=27.24 E-value=47 Score=28.36 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHHhhhh-HHHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDE-LVIIS 57 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~d-L~kIS 57 (182)
-.|+.+|-.||.-+|-+||-- |..|.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir 195 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIR 195 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence 469999999999999999977 87664
No 113
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str}
Probab=26.88 E-value=51 Score=28.94 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhhhhh
Q psy8149 39 IEMLKETVRKFGDELVIISDRIKDRT 64 (182)
Q Consensus 39 iemLr~aV~rFg~dL~kIS~~Ik~RT 64 (182)
.+.|.+++++|.+|..++-..|+.|-
T Consensus 297 ~ekl~eGIr~Fa~d~~kLe~~~~~~~ 322 (334)
T 3hjz_A 297 SEKLSEGITGFSKAIEELEELLIERL 322 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999884
No 114
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=26.84 E-value=42 Score=26.43 Aligned_cols=48 Identities=8% Similarity=0.196 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHH----HHHHh----hhhHHHHHHHhhhhhHHHHHHHHhhhhhhhc
Q psy8149 33 KWTAEDIEMLKE----TVRKF----GDELVIISDRIKDRTISQIKSNLKKKAFEDA 80 (182)
Q Consensus 33 KWTdeEiemLr~----aV~rF----g~dL~kIS~~Ik~RTv~QIKs~lKrK~~eda 80 (182)
+|+++++++++. ...+| |-+..-|.+--..|.....|..|++++=++.
T Consensus 85 ~W~~~~l~~m~~~GN~~an~~~e~~g~~~~~~~~KY~s~aA~~Yr~~l~~~~~~~~ 140 (144)
T 2p57_A 85 NWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIRQLGSAAL 140 (144)
T ss_dssp CCCHHHHHHHHHCCHHHHHHHHHHTTCCCCSHHHHHTSHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhCHHHHHHHHHHcCCCCCchhhccCcHHHHHHHHHHHHHHHHHH
Confidence 699999999863 22222 3333345555556666677777777665553
No 115
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=26.63 E-value=1.8e+02 Score=21.03 Aligned_cols=69 Identities=14% Similarity=0.281 Sum_probs=40.2
Q ss_pred hHhhHhhHHHHHhhhhhhccccCCCCCCCCC---CCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149 3 DIFLAAGTAFNKLADLTLQLHSTPDSPSGNK---WTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 3 EIF~aAG~AF~kLgeLTmqLh~~~ds~~~~K---WTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK 73 (182)
+.|.++-..+..++.+-..+-|........| |+ +-+.|......|......+....++-....|+..+.
T Consensus 39 ~~~~~~A~~l~~~a~~~~~~F~~gs~~~~A~p~IW~--~~~~F~~~~~~~~~aa~~l~~aA~~gD~~~~~~a~~ 110 (127)
T 2ykz_A 39 VQIKANVEVLKTLSALPWAAFGPGTEGGDARPEIWS--DAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFG 110 (127)
T ss_dssp HHHHHHHHHHHHHHTSSGGGSCTTCCCTTBCTHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHhhCCCCCCCcccCHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3455555555555555555555432111133 64 445677777777777777777777666667766554
No 116
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.50 E-value=39 Score=26.78 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy8149 31 GNKWTAEDIEMLKETVRK 48 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~r 48 (182)
-+.+||+||+.|++.|..
T Consensus 56 ~g~Lt~~ei~~l~~~i~~ 73 (152)
T 3iz6_M 56 AGELSAEEMDRLMAVVHN 73 (152)
T ss_dssp TTTSCHHHHHHHHHHHHS
T ss_pred eCcCCHHHHHHHHHHHHh
Confidence 368999999999999975
No 117
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=26.47 E-value=83 Score=22.99 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHhhh--hHHHHHHHh-------hhhhHHHHHHHHhhhhh
Q psy8149 33 KWTAEDIEMLKETVRKFGD--ELVIISDRI-------KDRTISQIKSNLKKKAF 77 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~--dL~kIS~~I-------k~RTv~QIKs~lKrK~~ 77 (182)
.-|..|.+.|+-.....|. ....|++.+ -.||+.--.+.++||+=
T Consensus 151 ~Lt~rE~~vL~~l~~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~ 204 (225)
T 1kgs_A 151 DLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVD 204 (225)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHhCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhh
Confidence 4799999999888877553 346677765 58999888888999983
No 118
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=25.17 E-value=1.1e+02 Score=20.35 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHHHHhh--hhhHHHHHHHHhhhh
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIISDRIK--DRTISQIKSNLKKKA 76 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik--~RTv~QIKs~lKrK~ 76 (182)
-.++|+.|.+.|+- + .-|-....|++.+. .+||......+++|+
T Consensus 19 ~~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 19 VNQLTPRERDILKL-I-AQGLPNKMIARRLDITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GGGSCHHHHHHHHH-H-TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HccCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 36899999999987 3 45888999999875 444444444444443
No 119
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=24.49 E-value=80 Score=22.24 Aligned_cols=27 Identities=7% Similarity=0.139 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhHHHHH
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDELVIIS 57 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL~kIS 57 (182)
-..++++|++.|...+.++.+.|+++.
T Consensus 121 ~~~l~~~e~~~l~~~l~~l~~~l~~~~ 147 (149)
T 4hbl_A 121 PQEFDTTEYDETKYVFEELEQTLKHLI 147 (149)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999988887653
No 120
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=24.34 E-value=1.5e+02 Score=19.34 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=33.3
Q ss_pred HhhHHHHHhhhhhhccccCCCCCCCCCCCHHHHHHHHH-------HHHHhhhhHHHHHHHhh
Q psy8149 7 AAGTAFNKLADLTLQLHSTPDSPSGNKWTAEDIEMLKE-------TVRKFGDELVIISDRIK 61 (182)
Q Consensus 7 aAG~AF~kLgeLTmqLh~~~ds~~~~KWTdeEiemLr~-------aV~rFg~dL~kIS~~Ik 61 (182)
+++..=..|..|.-+|.+.. +-|.-+--+.|.. ++.+|-+.|+.|+..++
T Consensus 24 ~~~~i~~~l~~L~~~~~~L~-----~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~ 80 (93)
T 4ioe_A 24 AAGEAQSQINRLEGDINSLE-----GQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLK 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777777776665 3699988888887 66666666666665543
No 121
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=24.08 E-value=90 Score=19.84 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhh
Q psy8149 40 EMLKETVRKFGDELVIISDRIKD 62 (182)
Q Consensus 40 emLr~aV~rFg~dL~kIS~~Ik~ 62 (182)
+-|+.+=+++|+.+.||-+.||.
T Consensus 4 ~~lrk~geKig~~~kkIgQkIKd 26 (37)
T 2k6o_A 4 DFFRKSKEKIGKEFKRIVQRIKD 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999999986
No 122
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=24.05 E-value=98 Score=21.45 Aligned_cols=24 Identities=0% Similarity=0.050 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHhhhhHHHH
Q psy8149 33 KWTAEDIEMLKETVRKFGDELVII 56 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~dL~kI 56 (182)
.++++|++.|...+.++.+-+.+.
T Consensus 125 ~l~~~e~~~l~~~l~~l~~~l~~~ 148 (152)
T 3bj6_A 125 GFSSVELTAYHKVQLALTRFFADL 148 (152)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhh
Confidence 567777777777777766555443
No 123
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=24.00 E-value=25 Score=25.54 Aligned_cols=22 Identities=9% Similarity=0.365 Sum_probs=17.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHh
Q psy8149 28 SPSGNKWTAEDIEMLKETVRKF 49 (182)
Q Consensus 28 s~~~~KWTdeEiemLr~aV~rF 49 (182)
...++.|.++==+-|.+||..|
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~y 24 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIY 24 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHS
T ss_pred CCcCCcCCHHHHHHHHHHHHHc
Confidence 3456899977667899999887
No 124
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=23.38 E-value=68 Score=21.01 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhH----HHHHHHhhhhhH
Q psy8149 31 GNKWTAEDIEMLKETVRKFGDEL----VIISDRIKDRTI 65 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~rFg~dL----~kIS~~Ik~RTv 65 (182)
..+|+.+=++.|.+++..|-..| +.++.|=|.+|+
T Consensus 17 ~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI 55 (68)
T 1b67_A 17 AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTI 55 (68)
T ss_dssp CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 47999999999999999995554 555555555553
No 125
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=23.30 E-value=1.2e+02 Score=22.34 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHhhh--hHHHHHHHhh-------hhhHHHHHHHHhhhhhh
Q psy8149 33 KWTAEDIEMLKETVRKFGD--ELVIISDRIK-------DRTISQIKSNLKKKAFE 78 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~--dL~kIS~~Ik-------~RTv~QIKs~lKrK~~e 78 (182)
.-|..|.+.|+-.....|. ....|++.+. .||+.--.+.+.||+-.
T Consensus 159 ~Lt~rE~~vL~~l~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 159 DLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCHHHHHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 4799999999888887554 3556887765 79999999999999843
No 126
>1s05_A Cytochrome C-556, C556; THis is A model obtained by -restrained modeling and minimization., electron transport; HET: HEM; NMR {Rhodopseudomonas palustris} SCOP: a.24.3.2
Probab=23.25 E-value=2.2e+02 Score=20.84 Aligned_cols=35 Identities=11% Similarity=0.394 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHH
Q psy8149 34 WTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNL 72 (182)
Q Consensus 34 WTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~l 72 (182)
|+ +-+.|......|......+.... + ....|+..+
T Consensus 76 W~--~~~~F~~~~~~~~~aa~~l~~aa-~-d~~~~~~a~ 110 (129)
T 1s05_A 76 WA--ERAKFDTEIADFAKAVDGAKGKI-K-DVDTLKAAM 110 (129)
T ss_dssp HH--THHHHHHHHHHHHHHHHHHHHHC-C-SHHHHHHHT
T ss_pred Hh--CHHHHHHHHHHHHHHHHHHHHHh-c-CHHHHHHHH
Confidence 74 55678888888888888888887 6 677776654
No 127
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=23.21 E-value=1.1e+02 Score=22.86 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHhh--hhHHHHHHHh-------hhhhHHHHHHHHhhhhhhh
Q psy8149 33 KWTAEDIEMLKETVRKFG--DELVIISDRI-------KDRTISQIKSNLKKKAFED 79 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg--~dL~kIS~~I-------k~RTv~QIKs~lKrK~~ed 79 (182)
.-|..|.+.|+-....-| -.-..|++.+ -.||+.--...++||+=..
T Consensus 153 ~LT~rE~~vL~~l~~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~~ 208 (238)
T 2gwr_A 153 SLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKD 208 (238)
T ss_dssp CCCHHHHHHHHHHHHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCSS
T ss_pred ccCHHHHHHHHHHHHCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccC
Confidence 489999999988888754 3355677755 6899998888999998543
No 128
>1hbw_A Regulatory protein GAL4; transcriptional activator, galactose and melibiose metabolism, dimerization domain, coiled-coil dimeric; NMR {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.13 E-value=50 Score=22.75 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=22.8
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHhhhhhhhcC
Q psy8149 50 GDELVIISDRIKDRTISQIKSNLKKKAFEDAG 81 (182)
Q Consensus 50 g~dL~kIS~~Ik~RTv~QIKs~lKrK~~edag 81 (182)
++||++| ++.|+..+||.-||+-...+.|
T Consensus 25 ~~d~D~l---l~~~~l~~ir~~L~~~~~~~~~ 53 (57)
T 1hbw_A 25 REDLDMI---LKMDSLRDIEALLTGLFVQDNV 53 (57)
T ss_dssp SSCCCHH---HHHHSSHHHHHHHHHHCCSCCS
T ss_pred cccHHHH---HcCCChHHHHHHHHHHHHHhcc
Confidence 7777766 6788899999999987766644
No 129
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=22.56 E-value=79 Score=24.00 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHhhhh--HHHHHHHh-------hhhhHHHHHHHHhhhhhh
Q psy8149 33 KWTAEDIEMLKETVRKFGDE--LVIISDRI-------KDRTISQIKSNLKKKAFE 78 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~d--L~kIS~~I-------k~RTv~QIKs~lKrK~~e 78 (182)
..|..|.+.|+-.+..-|+= -..|++.+ ..||+.--.+.|+||+=.
T Consensus 176 ~LT~rE~~iL~~l~~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHHHTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 58999999999998885544 34577776 779998888889999844
No 130
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=22.47 E-value=1.3e+02 Score=22.06 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHH--HHHhhhhHHHHHHHhhh-----hhHHHHHHHHhhh
Q psy8149 32 NKWTAEDIEMLKET--VRKFGDELVIISDRIKD-----RTISQIKSNLKKK 75 (182)
Q Consensus 32 ~KWTdeEiemLr~a--V~rFg~dL~kIS~~Ik~-----RTv~QIKs~lKrK 75 (182)
..+++++++.|+.. ++..|=-|..|.+.+.. ++..+++..+..+
T Consensus 37 R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~ 87 (135)
T 1q06_A 37 RTYTQQHLNELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEK 87 (135)
T ss_dssp EECCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhhcCCchHHHHHHHHHHH
Confidence 45999999988754 46778889999888853 3445555444433
No 131
>3m1m_A ORF904; primase, polymerase, replication; 1.85A {Sulfolobus islandicus}
Probab=22.44 E-value=31 Score=30.88 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHh--------------hhhhhhcCCCC
Q psy8149 35 TAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLK--------------KKAFEDAGLPI 84 (182)
Q Consensus 35 TdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lK--------------rK~~edag~p~ 84 (182)
|++|.+.|++-+.+|- +.+|+.-||+.+= .|.|.|.||.-
T Consensus 221 ~~~~~~~~~~e~~k~~----------~~k~~~~~~~~~c~~~~~~~~~~~~c~~k~y~~~~~dr 274 (335)
T 3m1m_A 221 TVVEFEELRKELVKRD----------SGKPVEKIKEEICTKSPPKLIKEIICENKTYADVNIDR 274 (335)
T ss_dssp -----CHHHHHHHHHC----------CCCCHHHHHHHHHTSCCCHHHHHHHTSCCCTTTTTCCH
T ss_pred cHHHHHHHHHHHHhhc----------CCCcHHHHHHHHHHhhhhhceeeeeecCCchhhccccc
Confidence 8899999999999984 4455555555443 57788888764
No 132
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=22.43 E-value=39 Score=26.61 Aligned_cols=18 Identities=17% Similarity=0.387 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy8149 31 GNKWTAEDIEMLKETVRK 48 (182)
Q Consensus 31 ~~KWTdeEiemLr~aV~r 48 (182)
-+.+||+||+.|++.|..
T Consensus 58 ~g~Lt~~ei~~l~~~i~~ 75 (146)
T 3u5c_S 58 AGELTQEELERIVQIMQN 75 (146)
T ss_dssp SSSCCHHHHHHHHHHHTC
T ss_pred eccCCHHHHHHHHHHHHh
Confidence 368999999999999974
No 133
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Probab=22.20 E-value=1.5e+02 Score=23.37 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHhh-hhhHHHHHHHHhhhhhhh
Q psy8149 35 TAEDIEMLKETVRKFGDELVIISDRIK-DRTISQIKSNLKKKAFED 79 (182)
Q Consensus 35 TdeEiemLr~aV~rFg~dL~kIS~~Ik-~RTv~QIKs~lKrK~~ed 79 (182)
|++||+.+|.|.+-=.+=+..+-+.|+ ..|..+|-..+.+...+.
T Consensus 6 s~~EI~~mr~A~~i~~~a~~~~~~~ikpG~tE~el~~~~~~~~~~~ 51 (264)
T 3tb5_A 6 SPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESH 51 (264)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCTTCBHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHc
Confidence 689999999998776666888888887 367778877776555443
No 134
>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} SCOP: a.24.3.1 PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 3l1m_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 3nmi_A* 3nmj_A* 3nmk_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 3hnk_A* ...
Probab=21.82 E-value=2.1e+02 Score=20.03 Aligned_cols=69 Identities=6% Similarity=-0.031 Sum_probs=48.4
Q ss_pred hHhhHhhHHHHHhhhhhhccccCCC-CCCCCCCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 3 DIFLAAGTAFNKLADLTLQLHSTPD-SPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 3 EIF~aAG~AF~kLgeLTmqLh~~~d-s~~~~KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
+.|.++-..+..+...-+.+.|... ..+. .-.+|-..++....|-..++++....+.--...||..+++
T Consensus 24 ~~~~~aa~~l~~~a~~~~~~fp~~s~~~t~---a~p~iw~~~~~F~~l~~~~~~l~~aa~~gd~~~~k~a~~~ 93 (106)
T 3de8_A 24 AQVKDALTKMRAAALDAQKATPPKLEDKSP---DSPEMHDFRHGFDILVGQIHDALHLANEGKVKEAQAAAEQ 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCGGGTTSCT---TSHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCccc---ccHHHHHhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5677777777777777777665432 2111 1256777777888898899999998888888888877653
No 135
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=21.70 E-value=45 Score=31.59 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHH
Q psy8149 35 TAEDIEMLKETVRKFGDELVIISDRIKDRTISQI 68 (182)
Q Consensus 35 TdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QI 68 (182)
.++|.+.|+.|++-||-|=..|-+++-.|+..|.
T Consensus 364 ~~~Da~~L~kA~kG~GtDE~~iI~IL~~rs~~QR 397 (672)
T 1m9i_A 364 PDADAKALRKAMKGLGTDEDTIIDIITHRSNVQR 397 (672)
T ss_dssp HHHHHHHHHHHHSSSSCCHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHH
Confidence 3689999999999999999999999999998664
No 136
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein; 1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Probab=21.57 E-value=1e+02 Score=26.47 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHH---hhhhHHHHHHHhhhhhHHHHHHHHh
Q psy8149 36 AEDIEMLKETVRK---FGDELVIISDRIKDRTISQIKSNLK 73 (182)
Q Consensus 36 deEiemLr~aV~r---Fg~dL~kIS~~Ik~RTv~QIKs~lK 73 (182)
+.|...|.+|++. .|.|-+.+-+++-+|+..||+...+
T Consensus 166 ~~DA~~L~~A~~~~gt~gtde~~~i~IL~~RS~~~L~~i~~ 206 (337)
T 3chj_A 166 EEDLVLVRKAIETKGVKKDEVSTWIRIFATYTRADFRQLHK 206 (337)
T ss_dssp HHHHHHHHHHHHSSSCCGGGHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 5788999999988 7989888999999999999987654
No 137
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=21.42 E-value=1.2e+02 Score=21.27 Aligned_cols=25 Identities=8% Similarity=0.268 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVII 56 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~kI 56 (182)
..|+++|++.|...+.++-+.+.+-
T Consensus 123 ~~l~~~e~~~l~~~l~~l~~~l~~~ 147 (151)
T 3kp7_A 123 SDFDSKEIEKVRQVLEIIDYRIQSY 147 (151)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999998887766553
No 138
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=21.16 E-value=1.8e+02 Score=24.02 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHHHhh
Q psy8149 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKK 74 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~dL~kIS~~Ik~RTv~QIKs~lKr 74 (182)
.++++|.+.|++++...=++|.+-.......-+..|+..+++
T Consensus 282 ~~~~~~~~~~~~a~~~v~~~~~~~~g~~g~~~l~~~~~~~~~ 323 (326)
T 3fxb_A 282 VLTDEQRSCFKEAAAEVEAKFIEMTGDSGAAILKQMKADLAA 323 (326)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 478999999999988776666543333345566677776664
No 139
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=20.96 E-value=65 Score=21.99 Aligned_cols=22 Identities=27% Similarity=0.146 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHhhhhHH
Q psy8149 33 KWTAEDIEMLKETVRKFGDELV 54 (182)
Q Consensus 33 KWTdeEiemLr~aV~rFg~dL~ 54 (182)
.|+++|++.|.+.+.++-+.++
T Consensus 117 ~l~~~e~~~l~~~l~~~~~~l~ 138 (142)
T 3bdd_A 117 ILTVEESEQFLATLDKLLIGLQ 138 (142)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888777766554
No 140
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=20.86 E-value=53 Score=26.58 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=13.0
Q ss_pred CCCCCHHHHHHHHHH
Q psy8149 31 GNKWTAEDIEMLKET 45 (182)
Q Consensus 31 ~~KWTdeEiemLr~a 45 (182)
+|=||++|+++|+++
T Consensus 183 EGGfs~~Ei~~~~~~ 197 (228)
T 1v6z_A 183 EGGFAEEEVALLEAR 197 (228)
T ss_dssp TTCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHC
Confidence 468999999999875
No 141
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=20.81 E-value=1e+02 Score=25.59 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q psy8149 35 TAEDIEMLKETVRKFGDELVIISDRIKD 62 (182)
Q Consensus 35 TdeEiemLr~aV~rFg~dL~kIS~~Ik~ 62 (182)
.+.|+++|+.|+.+.-.+|..|.+....
T Consensus 36 ~~~E~~rl~~Al~~~~~eL~~l~~~~~~ 63 (258)
T 1zym_A 36 VDQEVERFLSGRAKASAQLETIKTKAGE 63 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999988766543
No 142
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=20.32 E-value=90 Score=21.62 Aligned_cols=21 Identities=5% Similarity=0.109 Sum_probs=10.8
Q ss_pred CCHHHHHHHHHHHHHhhhhHH
Q psy8149 34 WTAEDIEMLKETVRKFGDELV 54 (182)
Q Consensus 34 WTdeEiemLr~aV~rFg~dL~ 54 (182)
|+++|++.|...+.++.+.|.
T Consensus 117 l~~~e~~~l~~~l~~l~~~l~ 137 (145)
T 3g3z_A 117 FGDKRTTRLFADLDALAEVME 137 (145)
T ss_dssp HCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544443
No 143
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=20.02 E-value=84 Score=21.36 Aligned_cols=24 Identities=17% Similarity=0.490 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHHHHHhhhhHHH
Q psy8149 32 NKWTAEDIEMLKETVRKFGDELVI 55 (182)
Q Consensus 32 ~KWTdeEiemLr~aV~rFg~dL~k 55 (182)
..++++|++.|...+.++.+.+++
T Consensus 113 ~~l~~~e~~~l~~~l~~~~~~l~~ 136 (138)
T 3bpv_A 113 RDFTEDERKLFRKMCRRLAEEAVR 136 (138)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHh
Confidence 368899999999999888776654
Done!