RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8149
(182 letters)
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural
genomics consortium, NESG, north structural genomics
consortium; NMR {Homo sapiens}
Length = 89
Score = 41.1 bits (96), Expect = 1e-05
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 24 STPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS---NLKKK 75
S ++ WT E++ K+ + + G I+ + +T+SQ K+ N KK+
Sbjct: 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKR 63
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of
chromatin subfamily...; SWI/SNF complex 155 kDa
subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Length = 79
Score = 40.3 bits (94), Expect = 2e-05
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 22 LHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAG 81
L + + +G +WT ++ +L E + + D+ +S+ + RT + + + ED
Sbjct: 9 LAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPY 68
Query: 82 LPI 84
L
Sbjct: 69 LEN 71
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding,
regulation of transcription, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Length = 72
Score = 39.0 bits (91), Expect = 5e-05
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 24 STPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70
S+ S KWT E+ E+ ++ + KFG IS I RT+ Q+KS
Sbjct: 2 SSGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKS 48
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein,
homeodomain, mitosis, cell cycle, nuclear protein; 1.8A
{Homo sapiens} SCOP: a.4.1.4
Length = 55
Score = 37.7 bits (88), Expect = 1e-04
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 33 KWTAEDIEMLKETVRKFGD---ELVIISDRIKDRTISQIK---SNLKKKA 76
KWT E+ E +K V+K+G+ + + +RT IK +K+
Sbjct: 4 KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 53
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein,
homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens}
SCOP: a.4.1.4 PDB: 1ba5_A
Length = 53
Score = 36.9 bits (86), Expect = 2e-04
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 33 KWTAEDIEMLKETVRKFGD---ELVIISDRIKDRTISQIKS---NLKKK 75
W E+ + L+ VRK+G+ +++ + +RT +K +KK
Sbjct: 4 AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4
PDB: 1iv6_A
Length = 69
Score = 36.7 bits (85), Expect = 3e-04
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 33 KWTAEDIEMLKETVRKFGD---ELVIISDRIKDRTISQIK---SNLKKKAF 77
W E+ + L+ VRK+G+ +++ + +RT +K +KK
Sbjct: 12 AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix,
telomere, DNA binding protein; NMR {Homo sapiens} SCOP:
a.4.1.4 PDB: 1xg1_A 1vfc_A
Length = 64
Score = 36.6 bits (85), Expect = 3e-04
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 33 KWTAEDIEMLKETVRKFGD---ELVIISDRIKDRTISQIK---SNLKKKA 76
KWT E+ E +K V+K+G+ + + +RT IK +K+
Sbjct: 13 KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure
genomics, SANT domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 63
Score = 35.2 bits (81), Expect = 0.001
Identities = 7/46 (15%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 24 STPDSPSGNKWTAEDIEMLKETVRKFGDELVII-SDRIKDRTISQI 68
S+ S WT ++++ + +R++G I + + ++ ++
Sbjct: 2 SSGSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGEL 47
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 61
Score = 35.1 bits (81), Expect = 0.001
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQI 68
N WT + E+ K+ + +I+ ++ +++
Sbjct: 13 NVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDC 49
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.001
Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 36/155 (23%)
Query: 31 GNKWTAEDI-EMLKETVRKFGDELVIISDRIKD--RTISQIKSNLKK----KAFEDAGLP 83
N + E + EML++ + + SD + I I++ L++ K +E+ L
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL- 248
Query: 84 IQQQVAPPQQIVQQVVQQQHQQVVQA----PQMVQTPTR---VVQQTVATVPVPVSAQQQ 136
++ V Q+ + A +++ T TR V A +S
Sbjct: 249 ----------VLLNV---QNAKAWNAFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHH 294
Query: 137 LLSGSH-KSAEVTLNMLNAHPESEVDVEGLPEEVK 170
++ + + + L L+ + LP EV
Sbjct: 295 SMTLTPDEVKSLLLKYLD------CRPQDLPREVL 323
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET:
I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Length = 94
Score = 35.3 bits (81), Expect = 0.002
Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 13 NKLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQI 68
+AD N W+ ++ E +E + +I+ ++ +T+++
Sbjct: 28 GLMADPMKVYKDRQVM---NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAEC 80
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR
{Nicotiana glutinosa}
Length = 121
Score = 34.4 bits (78), Expect = 0.005
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 33 KWTAEDIEMLKETVRKFGDE-----LVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQ 87
++ ++E L E V G + D RT +K K + P Q++
Sbjct: 19 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 78
Query: 88 VAP-PQQIVQQVVQQQHQQVVQAPQMVQTPTRVV 120
P PQ ++ +V+ Q + P +++
Sbjct: 79 GEPVPQDLLDRVLAAHAYWSQQQGKQHVEPLKIL 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.008
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 35/121 (28%)
Query: 77 FEDA-------GLPIQQQVAP--------------PQQIVQQVVQQQHQQVVQAPQMVQT 115
E G+ +Q V P ++ Q+ Q VV+ ++ +
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE--RVGKR 1836
Query: 116 PTRVVQQTVATVPVPV----SAQQQLLSGSHKSAEVTLNMLNAHPESEVDVEGLPEEVKL 171
+V+ V QQ + +G ++ + N+LN ++D+ L + + L
Sbjct: 1837 TGWLVE--------IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Query: 172 Q 172
+
Sbjct: 1889 E 1889
Score = 31.6 bits (71), Expect = 0.17
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 18/87 (20%)
Query: 86 QQVAPPQQIVQQVVQQ--QHQQVVQAPQM--VQTPTRV-VQQTVATVPVPVSAQQQLLSG 140
+ P + +++ ++ + V +P M + T+ VQ V L +G
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSP-MLSISNLTQEQVQDYVNKT------NSHLPAG 363
Query: 141 SHKSAEVTLNMLNAHPESEVDVEGLPE 167
V ++++N ++ V V G P+
Sbjct: 364 KQ----VEISLVNG-AKNLV-VSGPPQ 384
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 34.8 bits (80), Expect = 0.012
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 15/56 (26%)
Query: 25 TPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI---------------KDRTI 65
P +P K +E ++ V + +L+I++D + + T+
Sbjct: 253 NPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTL 308
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus
musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Length = 159
Score = 33.4 bits (77), Expect = 0.015
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 33 KWTAEDIEMLKETVRKFGDEL-VIISDRIKDRTISQ--------IKSNLKKKAF---EDA 80
+WT E+ E LK+ V + G + +I++ + +RT Q + L K + ED
Sbjct: 8 RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQ 67
Query: 81 GL 82
+
Sbjct: 68 RV 69
Score = 32.2 bits (74), Expect = 0.042
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 29 PSGNK--WTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIK----SNLKKK 75
P K WT E+ ++ + ++ G+ I+ + RT + IK S +++K
Sbjct: 106 PEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics,
unknown function, NPPSFA; NMR {Mus musculus}
Length = 60
Score = 31.4 bits (72), Expect = 0.018
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 33 KWTAEDIEMLKETVRKFGDEL-VIISDRIKDRTISQ 67
KWT E+ E L+ VR+FG + ++ +RT Q
Sbjct: 10 KWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQ 45
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics,
PSI, protein struct initiative, northeast structural
genomics consortium; 2.90A {Enterococcus faecalis} SCOP:
c.1.15.6
Length = 367
Score = 33.7 bits (76), Expect = 0.022
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 24 STPDSPSGNKWTAEDIEMLKETVRKFGDELVIIS-----DRIK------DRTISQIKSNL 72
+ + G+ WT +I+ LK++V + G L+ I D IK D I + L
Sbjct: 42 TLLNKLPGDVWTVAEIQALKQSVEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTL 101
Query: 73 KKKAFEDAGLPI 84
+ G+ +
Sbjct: 102 RNLG--KCGISL 111
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3;
transcription, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 75
Score = 31.9 bits (72), Expect = 0.024
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 31 GNKWTAEDIEMLKETVRKFGDELVI------ISDRIKDRTISQIKSNLKK--KAFEDAGL 82
WT E+ + L++ + K+ E V I+D + +RT Q+ S ++K AG+
Sbjct: 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67
Query: 83 PI 84
P+
Sbjct: 68 PV 69
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
a.4.1.3
Length = 105
Score = 32.0 bits (72), Expect = 0.031
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 33 KWTAEDIEMLKETVRKFG-----DELVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQ 87
++ ++E L + V K G D + + RT +K K P Q++
Sbjct: 15 PFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRR 74
Query: 88 VAP-PQQIVQQVVQQQ 102
P PQ+++ +V+
Sbjct: 75 GEPVPQELLNRVLNAH 90
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional
adaptor protein2, transcriptional activation, MYB
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.4.1.1
Length = 60
Score = 30.8 bits (70), Expect = 0.031
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 24 STPDSPSGNKWTAEDIEMLKETVRKFG-DELVIISDRIKDRTISQIKS 70
+ S WTA++ L E V G +++++ +T + +
Sbjct: 1 GSSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEK 48
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding
protein; NMR {Oryza sativa}
Length = 122
Score = 32.4 bits (73), Expect = 0.032
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 33 KWTAEDIEMLKETVRKFGDE-----LVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQ 87
+T ++E+L E V G + + RT +K K + P Q++
Sbjct: 33 PFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRR 92
Query: 88 VAP-PQQIVQQVVQQQHQQVVQA 109
AP PQ+++ +V+ Q V +
Sbjct: 93 GAPVPQELLDRVLAAQAYWSVDS 115
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 33.3 bits (76), Expect = 0.036
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 16/57 (28%)
Query: 24 STPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI---------------KDRTI 65
P +P+ ++ + +K+ V K L+IISD + T+
Sbjct: 251 VNPTNPTSKEFDTNALNAIKQAVEKNPK-LMIISDEVYGAFVPNFKSIYSVVPYNTM 306
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription
regulator complex, oxidoreductase/repressor complex,
histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens}
SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B*
2x0l_B*
Length = 235
Score = 32.8 bits (73), Expect = 0.042
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 23 HSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70
+WT E+ + + +RK+G + ISD I ++++ Q+K+
Sbjct: 125 LPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 172
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR
{Trichomonas vaginalis} PDB: 2kdz_A
Length = 107
Score = 31.4 bits (72), Expect = 0.052
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 28 SPSGNK--WTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIK----SNLKKKA 76
+P+ W+ E+ +L + ++G + IS +K+R+ + I+ + +A
Sbjct: 48 NPALRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102
Score = 31.0 bits (71), Expect = 0.071
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 32 NKWTAEDIEMLKETVRKFGDEL-VIISDRIKDRT--------ISQIKSNLKKKAF---ED 79
K+T E+ L++ V ++G + + IS + R + I L+ + ED
Sbjct: 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEED 61
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 32.5 bits (75), Expect = 0.054
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 33/113 (29%)
Query: 24 STPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI-----------------KDRTI- 65
S P +P+G + +++ L E + G L +I D + D+ +
Sbjct: 181 SNPCNPTGVVYGKDEMRYLVEIAERHG--LFLIVDEVYSEIVFRGEFASALSIESDKVVV 238
Query: 66 ----SQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQQVVQQQHQQVVQAPQMVQ 114
S K F G + + ++++ + + Q + P + Q
Sbjct: 239 IDSVS--------KKFSACGARVGCLITRNEELISHAM-KLAQGRLAPPLLEQ 282
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation,
chromatin, structural genomics consortium, SGC,
activator, chromatin regulator; HET: DNA; 1.80A {Homo
sapiens}
Length = 93
Score = 31.0 bits (70), Expect = 0.055
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 32 NKWTAEDIEMLKETVRKFGDELVIISDR-----IKDRTISQIKS 70
+ WT + + L + R+F V+I DR K R++ +K
Sbjct: 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKE 74
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription
regulation, DNA binding, ION bindi proto-oncogene,
nuclear protein, activator; 1.6A {Mus musculus} SCOP:
a.4.1.3 PDB: 1mbe_A 1mbf_A
Length = 52
Score = 29.8 bits (68), Expect = 0.056
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 33 KWTAEDIEMLKETVRKFGDEL-VIISDRIKDRTISQ 67
+WT E+ E LK+ V + G + +I++ + +RT Q
Sbjct: 5 RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQ 40
>2crg_A Metastasis associated protein MTA3; transcription factor, helix
turn helix, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: a.4.1.3
Length = 70
Score = 30.3 bits (68), Expect = 0.073
Identities = 8/38 (21%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 32 NKWTAEDIEMLKETVRKFGDELVII-SDRIKDRTISQI 68
+W+A + + +E + K+G + I D + ++++ I
Sbjct: 9 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSI 46
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A
{Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Length = 83
Score = 30.3 bits (68), Expect = 0.074
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 33 KWTAEDIEMLKETVRKFG-----DELVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQ 87
++ ++E L E V G D + D RT +K K + P Q++
Sbjct: 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61
Query: 88 VAP-PQQIVQQV 98
P PQ ++ +V
Sbjct: 62 GEPVPQDLLDRV 73
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell
cycle, DNA binding, spliceosome, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 29.9 bits (68), Expect = 0.091
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 26 PDSPSGNK--WTAEDIEMLKETVRKFGDEL-VIISDRIKDRTISQ--------IKSNLKK 74
SG W + E+LK V K+G I+ + ++ Q + ++KK
Sbjct: 2 SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61
Query: 75 KAF 77
+
Sbjct: 62 TEW 64
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding
PR transcription factor; 2.00A {Trichomonas vaginalis}
PDB: 3osf_A
Length = 126
Score = 30.7 bits (70), Expect = 0.11
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRT--------ISQIKSNLKKKAF---EDA 80
K+T E+ EMLK V + G + +I+ +R + + ++ + EDA
Sbjct: 12 QKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDA 71
Score = 29.9 bits (68), Expect = 0.18
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 28 SPSGNK--WTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIK----SNLKKKAFEDAG 81
+PS + WTAE+ +L + ++++G + II+ RT IK + K
Sbjct: 57 APSISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQ 116
Query: 82 LPIQQQ 87
++
Sbjct: 117 QMLEHH 122
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle,
SGC, structural genomics consortium, NESG, NOR
structural genomics consortium; NMR {Homo sapiens}
Length = 73
Score = 29.5 bits (66), Expect = 0.12
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 33 KWTAEDIEMLKETVRKFGDELVIISDRI-------KDRTISQIKSN 71
K+T E+IE LKE K G++ I + KDR +K
Sbjct: 25 KYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDR-CRLMKDT 69
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone
inhibitor binding, methylation, nucleosome core,
oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB:
2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Length = 482
Score = 31.1 bits (68), Expect = 0.17
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 23 HSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS---NLKKK 75
+WT E+ + + +RK+G + ISD I ++++ Q+K+ N +++
Sbjct: 372 LPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427
Score = 29.1 bits (63), Expect = 0.91
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 29 PSGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQI 68
P ++WT ED + ++ G I + D++I+ +
Sbjct: 187 PFPDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASL 226
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.18
Identities = 6/27 (22%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 63 RTISQIKSNLKKKAFEDA-GLPIQQQV 88
+ + +++++LK A + A L I+ +
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 30.6 bits (70), Expect = 0.28
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 25 TPDSPSGNKWTAEDIEMLKETVRKFGDELVIISD 58
TP +PS W D L + + E+ +ISD
Sbjct: 171 TPHNPSATVWQQADFAALWQAIAGH--EIFVISD 202
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 30.4 bits (69), Expect = 0.29
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 25 TPDSPSGNKWTAEDIEMLKETVRKFGDELVIISD 58
TP +P G ++E++ +K+ ++ +SD
Sbjct: 190 TPHNPLGKVMDRAELEVVANLCKKW--NVLCVSD 221
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 30.4 bits (69), Expect = 0.30
Identities = 9/34 (26%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 25 TPDSPSGNKWTAEDIEMLKETVRKFGDELVIISD 58
TP++P G ++ E++E++ ++ ++V I+D
Sbjct: 182 TPNNPLGKVFSREELELVASLCQQH--DVVCITD 213
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 30.3 bits (69), Expect = 0.31
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 25 TPDSPSGNKWTAEDIEMLKETVRKFGDELVIISD 58
+P +P+G +A ++ + E LV+I+D
Sbjct: 168 SPHNPTGAVLSATELAAIAEIAVAA--NLVVITD 199
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 30.4 bits (69), Expect = 0.31
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 25 TPDSPSGNKWTAEDIEMLKETVRKFGDELVIISD 58
TP +P G +T E++ L K +VIISD
Sbjct: 209 TPHNPIGKVFTREELTTLGNICVKHN--VVIISD 240
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 30.2 bits (69), Expect = 0.33
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 25 TPDSPSGNKWTAEDIEMLKETVRKFGDELVIISD 58
TP +P+G + ++E + R +L +ISD
Sbjct: 160 TPMNPTGLVFGERELEAIARLARAH--DLFLISD 191
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 30.3 bits (69), Expect = 0.35
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 25 TPDSPSGNKWTAEDIEMLKETVRKFGDELVIISD 58
TP +P G +T ++++++ + K + + ISD
Sbjct: 175 TPHNPLGKVYTRQELQVIADLCVKH--DTLCISD 206
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase;
HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A*
3dbn_A* 3fvm_A
Length = 386
Score = 29.8 bits (66), Expect = 0.47
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 23 HSTPDSPSGNKWTAEDIEMLKETVRKFGDELVII 56
+ D P G W E+I LK+ V + G E+ +I
Sbjct: 50 TAVYDVPVGQAWPLENILELKKMVEEAGLEITVI 83
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell
cycle, DNA binding, spliceosome, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 27.9 bits (62), Expect = 0.48
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 32 NKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQ--------IKSNLKKKAFEDAG 81
+W+ E+ E L + + I+ I RT +Q + ++ + +G
Sbjct: 10 TEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRDSGPSSG 66
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding,
hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima
MSB8} PDB: 2x7w_A*
Length = 287
Score = 29.4 bits (66), Expect = 0.59
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 28 SPSGNKWTAEDIEMLKETVRKFGDE 52
+P GN+ AEDI+ + E + KFG E
Sbjct: 261 TPGGNEEHAEDIKKVFEIIEKFGIE 285
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 29.3 bits (66), Expect = 0.66
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 24 STPDSPSGNKWTAEDIEMLKETVRKFGDELVIISD 58
S P +P+GN T E++ L E +++ + +I D
Sbjct: 213 SRPTNPTGNVLTDEEMAHLAEIAKRYD--IPLIID 245
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein
transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Length = 554
Score = 29.0 bits (64), Expect = 0.87
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 85 QQQVAPPQQIVQQVVQQQHQQVVQAPQMVQTPTRVVQQTVATVPVPVSAQQQLLSGSHKS 144
Q Q+ P + + ++ +Q ++ +Q + + V P +A +
Sbjct: 1 QAQLLPGARDLNRIDDRQRKEQLQR----DIERALTRPPVELNPQSEAAAPARKPDATSG 56
Query: 145 AEVTLN 150
VT++
Sbjct: 57 HTVTVH 62
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 28.7 bits (65), Expect = 0.96
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 21/62 (33%)
Query: 25 TPDSPSGNKWTAEDI----EMLKETVRKFGDELVIISDRI-----------------KDR 63
+P++PSG ++ E I ++L++ ++ G + II+D D
Sbjct: 180 SPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDN 239
Query: 64 TI 65
T+
Sbjct: 240 TL 241
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 28.8 bits (65), Expect = 1.1
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 24 STPDSPSGNKWTAEDIEMLKETVRKFGDELVIISD 58
S P +P+GN T E++ L + + ++ D
Sbjct: 187 SRPTNPTGNVITDEELMKLDRLANQHN--IPLVID 219
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: PLP; 1.50A {Clostridium
difficile} PDB: 4dgt_A*
Length = 391
Score = 28.6 bits (65), Expect = 1.2
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 14 KLADLTLQLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVIISDRI 60
K+ D+ L + P +P G WT ++++ L + K + IISD I
Sbjct: 161 KIKDVKLFILCNPHNPVGRVWTKDELKKLGDICLKHN--VKIISDEI 205
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics,
NPPSFA; NMR {Schizosaccharomyces pombe}
Length = 58
Score = 26.6 bits (59), Expect = 1.3
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 33 KWTAEDIEMLKETVRKFG-DELVIISDRI-KDRTISQIKS 70
W A++ +L + G I+D + RT + +
Sbjct: 11 NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRD 50
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 28.0 bits (62), Expect = 1.8
Identities = 11/86 (12%), Positives = 24/86 (27%), Gaps = 18/86 (20%)
Query: 41 MLKETVRKFGDELVIISDRI------------KDRTISQIKSNLKKKAFEDAGLPIQQQV 88
+L+ V K I D + D I + + K +G +
Sbjct: 211 LLRHAVIKGCKS---IYDMVYYWPHYTPIKYKADEDIL-LFT--MSKFTGHSGSRFGWAL 264
Query: 89 APPQQIVQQVVQQQHQQVVQAPQMVQ 114
+ + ++ + P+ Q
Sbjct: 265 IKDESVYNNLLNYMTKNTEGTPRETQ 290
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A
{Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Length = 128
Score = 27.1 bits (61), Expect = 1.8
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 28 SPSGNK--WTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIK----SNLKKK 75
+P K WT E+ ++ + ++ G+ I+ + RT + +K S +++K
Sbjct: 74 NPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 27.1 bits (59), Expect = 3.8
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 5/100 (5%)
Query: 85 QQQVAPP-----QQIVQQVVQQQHQQVVQAPQMVQTPTRVVQQTVATVPVPVSAQQQLLS 139
QQQ P Q + Q + + +V + Q + P+ QQQ ++
Sbjct: 58 QQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117
Query: 140 GSHKSAEVTLNMLNAHPESEVDVEGLPEEVKLQFDTTAQQ 179
N P +++ L E+
Sbjct: 118 APAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLP 157
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D,
NESG, structural genomics, PSI-2; 2.40A {Synechococcus
elongatus pcc 6301}
Length = 161
Score = 26.7 bits (59), Expect = 4.1
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 35 TAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS 70
T + +E+ G L + I +KS
Sbjct: 124 TEAIYQQCEESGTDLGQWL------TRADAIQTMKS 153
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine
biosynthesis, pyridoxal PH montreal-kingston bacterial
structural genomics initiative; HET: PMP; 1.50A
{Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A*
1gex_A* 1gey_A* 1iji_A*
Length = 356
Score = 26.8 bits (60), Expect = 4.3
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 25 TPDSPSGNKWTAEDIEMLKETVRKFGDELVII 56
+P++P+G +D L E R G +V+
Sbjct: 154 SPNNPTGQLINPQDFRTLLELTR--GKAIVVA 183
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.05A {Ralstonia eutropha JMP134}
Length = 367
Score = 26.8 bits (60), Expect = 4.8
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 25 TPDSPSGNKWTAEDIEMLKETVRKFGDELVIISD 58
P++P+GN + A D+E + + +++ D
Sbjct: 165 YPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVD 198
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan
biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine,
flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus
caldophilus} PDB: 2gqu_A*
Length = 268
Score = 26.3 bits (59), Expect = 5.4
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 35 TAEDIEMLKETVR-KFGDEL 53
A+D+ L V+ + EL
Sbjct: 243 RAKDVLELVRRVQEELPLEL 262
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 26.3 bits (59), Expect = 6.5
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 34 WTAEDIEMLKETVRKF 49
WT + L + R F
Sbjct: 28 WTTPERRALSQMARSF 43
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 26.3 bits (59), Expect = 6.7
Identities = 5/16 (31%), Positives = 13/16 (81%)
Query: 37 EDIEMLKETVRKFGDE 52
++++ML++ VR F ++
Sbjct: 7 KELQMLQKEVRNFVNK 22
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 26.5 bits (59), Expect = 6.7
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 37 EDIEMLKETVRKFGDELVI-ISDRIKDRTISQIKSNLKKKAFE 78
E ++ + T R F + V+ + +R+ + ++ L +KA E
Sbjct: 30 ESVKEIARTTRTFVEREVLPLLERM-EHGELELNVPLMRKAGE 71
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 26.0 bits (58), Expect = 7.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 32 NKWTAEDIEMLKETVRKF 49
+ WT + E L++TVR F
Sbjct: 23 SIWTTAEREALRKTVRAF 40
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 26.0 bits (58), Expect = 8.0
Identities = 3/28 (10%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 37 EDIEMLKETVRKFGDELVIISDRIKDRT 64
+ + + + + DRT
Sbjct: 11 PAGRTVVDLLAGVIPRISAEAADR-DRT 37
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 26.0 bits (58), Expect = 8.5
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 37 EDIEMLKETVRKFGDE 52
++ M+K +V+KF E
Sbjct: 31 DEEMMIKSSVKKFAQE 46
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 25.9 bits (58), Expect = 8.9
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 37 EDIEMLKETVRKFGDE 52
E+ L++T+ KF E
Sbjct: 15 EEQRQLRQTMAKFLQE 30
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane
protein, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.3
Length = 72
Score = 24.3 bits (52), Expect = 9.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 28 SPSGNKWTAEDIEMLKETVRKF 49
S +WT ED+ L ++ KF
Sbjct: 5 SSGAPEWTEEDLSQLTRSMVKF 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.126 0.342
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,554,383
Number of extensions: 141052
Number of successful extensions: 529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 84
Length of query: 182
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,244,745
Effective search space: 399006030
Effective search space used: 399006030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.4 bits)