RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8149
(182 letters)
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human
(Homo sapiens) [TaxId: 9606]}
Length = 65
Score = 42.5 bits (100), Expect = 8e-07
Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Query: 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS---NLKKK 75
+WT E+ + + +RK+G + ISD I ++++ Q+K+ N +++
Sbjct: 7 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 68
Score = 41.0 bits (96), Expect = 3e-06
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 30 SGNKWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS---NLKKK 75
N W+ ++ E +E + +I+ ++ +T+++ KK
Sbjct: 16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 36.4 bits (84), Expect = 1e-04
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIKS------NLKKKAFEDAGLPIQQ 86
KWT E+ E+ ++ + KFG IS I RT+ Q+KS K K D P Q+
Sbjct: 4 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQK 63
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 35.9 bits (83), Expect = 2e-04
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 32 NKWTAEDIEMLKETVRKFGDELVIIS-DRIKDRTISQIKS 70
+W+A + + +E + K+G + I D + ++++ I
Sbjct: 2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIE 41
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 34.0 bits (78), Expect = 8e-04
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 32 NKWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIK 69
+WT E+ E LK+ V + G + +I++ + +RT Q +
Sbjct: 2 TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQ 40
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 47
Score = 33.3 bits (76), Expect = 0.001
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 33 KWTAEDIEMLKETVRKFGDELVIISDRIKDRTISQIK 69
WT E+ ++ + ++ G+ I+ + RT + IK
Sbjct: 3 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIK 39
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric
protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 32.9 bits (75), Expect = 0.002
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 33 KWTAEDIEMLKETVRKFGD---ELVIISDRIKDRTISQIK---SNLKK 74
W E+ + L+ VRK+G+ +++ + +RT +K +KK
Sbjct: 4 AWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 52
Score = 32.0 bits (73), Expect = 0.004
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 33 KWTAEDIEMLKETVRKFGD-ELVIISDRIKDRTISQIK 69
WT E+ + L + V+K+G +I+ +K R Q +
Sbjct: 5 PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCR 42
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum
majus) [TaxId: 4151]}
Length = 63
Score = 31.8 bits (72), Expect = 0.007
Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 31 GNKWTAEDIEMLKETVRKFG----DELVIISDRIKDRTISQIKS 70
G W+A++ + + + + D ++ ++ RT ++K
Sbjct: 1 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKK 44
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus
faecalis (Streptococcus faecalis) [TaxId: 1351]}
Length = 353
Score = 32.6 bits (74), Expect = 0.017
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 24 STPDSPSGNKWTAEDIEMLKETVRKFGDEL-----VIISDRIK------DRTISQIKSNL 72
+ + G+ WT +I+ LK++V + G L V I D IK D I + L
Sbjct: 32 TLLNKLPGDVWTVAEIQALKQSVEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTL 91
Query: 73 KKKAFEDAGLPI 84
+ G+ +
Sbjct: 92 RNLG--KCGISL 101
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 55
Score = 28.4 bits (63), Expect = 0.077
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 33 KWTAEDIEMLKETVRKFGD---ELVIISDRIKDRTISQIK---SNLKKK 75
KWT E+ E +K V+K+G+ + + +RT IK +K+
Sbjct: 4 KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 52
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 28.7 bits (64), Expect = 0.14
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 21 QLHSTPDSPSGNKWTAEDIEMLKETVRKFGDELVI---ISDRIKDRTISQIK 69
+ WT E ++ ++ G + IS ++ ++T ++
Sbjct: 23 NSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVS 74
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 60
Score = 27.7 bits (61), Expect = 0.16
Identities = 4/44 (9%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 30 SGNKWTAEDIEMLKETVRKFGDELVI----ISDRIKDRTISQIK 69
+ WT ++L+ ++++ I+ + ++
Sbjct: 11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCI 54
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 86
Score = 27.6 bits (61), Expect = 0.30
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 32 NKWTAEDIEMLKETVRKFGDEL------VIISDRIKDRTISQI----KSNLKKK 75
+T E+ E + + VRK IS + + T + I + L K+
Sbjct: 2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 55
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 83
Score = 27.3 bits (60), Expect = 0.38
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 10/81 (12%)
Query: 33 KWTAEDIEMLKETVRKFGDE-----LVIISDRIKDRTISQIKS---NLKKKAFEDAGLPI 84
++ ++E L E V G + D RT +K L A
Sbjct: 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61
Query: 85 QQQVAPPQQIVQQVVQQQHQQ 105
+ V PQ ++ +V+
Sbjct: 62 GEPV--PQDLLDRVLAAHAYW 80
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM
domains {Thermus thermophilus [TaxId: 274]}
Length = 227
Score = 28.1 bits (61), Expect = 0.56
Identities = 15/130 (11%), Positives = 37/130 (28%), Gaps = 1/130 (0%)
Query: 37 EDIEMLKETVRKFGDELVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQIVQ 96
E+ L+ R+F E+++ + D ++K I + +
Sbjct: 7 EEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKM 66
Query: 97 QVVQQQHQQVVQAPQMVQTPTRVVQQTVATVPVPVS-AQQQLLSGSHKSAEVTLNMLNAH 155
+++ A + T + V + + Q++ +
Sbjct: 67 LDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSE 126
Query: 156 PESEVDVEGL 165
P + D L
Sbjct: 127 PGNGSDAAAL 136
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 231
Score = 27.6 bits (60), Expect = 0.67
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 37 EDIEMLKETVRKFGDE 52
E +ML++T R F ++
Sbjct: 9 ETHQMLRQTCRDFAEK 24
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase,
NM domains {Pig (Sus scrofa) [TaxId: 9823]}
Length = 231
Score = 27.2 bits (59), Expect = 0.96
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 37 EDIEMLKETVRKFGDELVIISDRIKDRT 64
E + + T RKF E +I DRT
Sbjct: 8 EQQKEFQATARKFAREEIIPVAAEYDRT 35
>d1n00a_ a.65.1.1 (A:) Annexin GH1 {Cotton (Gossypium hirsutum)
[TaxId: 3635]}
Length = 318
Score = 27.3 bits (60), Expect = 1.2
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 23 HSTPDSPSGNKWTAEDIEMLKETVRKFG-DELVIIS 57
H+T P+ +ED E L++ +G +E +II
Sbjct: 3 HATLTVPTTVPSVSEDCEQLRKAFSGWGTNEGLIID 38
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 26.9 bits (58), Expect = 1.3
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 37 EDIEMLKETVRKFGDELVIISDRIKDRT 64
D ++++T R + E ++ + +R
Sbjct: 16 TDEILIRDTFRTYCQERLMPRILLANRN 43
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 26.7 bits (58), Expect = 1.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 37 EDIEMLKETVRKFGDELVIISDRIKDRT 64
E+ L++T+ KF E + + DR+
Sbjct: 10 EEQRQLRQTMAKFLQEHLAPKAQEIDRS 37
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum
[TaxId: 5507]}
Length = 259
Score = 26.3 bits (56), Expect = 2.0
Identities = 1/18 (5%), Positives = 6/18 (33%)
Query: 37 EDIEMLKETVRKFGDELV 54
+ + F + ++
Sbjct: 7 PSQLEARRHAQAFANTVL 24
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase
{Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 197
Score = 26.0 bits (57), Expect = 2.2
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 22 LHSTPDSPSGNKWTAEDIEMLKETVRK 48
L + D + A++IE LKE R
Sbjct: 7 LSFSID-NQVAEKYAQEIEALKEQTRS 32
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 26.3 bits (57), Expect = 2.4
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 35 TAEDIEMLKETVRKFGDELVIIS 57
T E I E + G +L +I+
Sbjct: 379 TPEQITRAVEAFTRIGKQLGVIA 401
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
{Megasphaera elsdenii [TaxId: 907]}
Length = 232
Score = 26.2 bits (56), Expect = 2.7
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 37 EDIEMLKETVRKFGDELVIISDRIKDRT 64
+ + + FG++ + + +D
Sbjct: 7 DIQQDFLKLAHDFGEKKLAPTVTERDHK 34
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 231
Score = 26.0 bits (56), Expect = 2.8
Identities = 2/16 (12%), Positives = 6/16 (37%)
Query: 37 EDIEMLKETVRKFGDE 52
E+ + ++ F
Sbjct: 12 EEQKEFQKVAFDFAAR 27
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 95
Score = 25.0 bits (55), Expect = 2.9
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 37 EDIEMLKETVRKFGDELVIISD 58
ED + G + I+S
Sbjct: 52 EDGRRSLSIAQTVGTRIHIVSV 73
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 202
Score = 25.1 bits (55), Expect = 4.6
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 51 DELVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQI 94
ELV I + I ++ K+K F L +QV+P I
Sbjct: 100 GELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQVSPGGSI 143
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 203
Score = 24.4 bits (53), Expect = 9.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 51 DELVIISDRIKDRTISQIKSNLKKKAFEDAGLPIQQQVAPPQQI 94
DELV + + + I+ + K++ F L +QV+P I
Sbjct: 100 DELVPLPGDLALEKVRAIRRSAKERVFVTNALRALRQVSPTGNI 143
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.126 0.342
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 593,992
Number of extensions: 25119
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 34
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.2 bits)