RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8151
(220 letters)
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 155 bits (393), Expect = 9e-47
Identities = 65/210 (30%), Positives = 95/210 (45%), Gaps = 62/210 (29%)
Query: 7 DTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSEN 66
TY++ V + V V LNRP K NAMN P W E+ E F L +
Sbjct: 3 TTYESFTVEL-ADHVAQVTLNRPGKGNAMN-----PA--------FWSELPEIFRWLDAD 48
Query: 67 EECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGK 126
E R ++LS +GK F+ G+DL M + ++
Sbjct: 49 PEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG---------------------------- 80
Query: 127 IFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGAC 186
++ +AR LR+ I Q +I+++ C KPVI+AV G C
Sbjct: 81 --------------------KDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWC 120
Query: 187 IGGGMSLITAADIRYATKDAWFTLKEVDIG 216
IGGG+ LI+A D+RYA+ DA F+++EVD+G
Sbjct: 121 IGGGVDLISACDMRYASADAKFSVREVDLG 150
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 119 bits (302), Expect = 4e-34
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 10/116 (8%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+++ D + + RV+VL+ AGK F AG DL + +L E R
Sbjct: 29 DELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEE----------ARAF 78
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
I Q+ + +L R PKPVI+AV+GA +GGG+ L A DIR A +DA F L EV +G
Sbjct: 79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLG 134
Score = 78.0 bits (193), Expect = 6e-18
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V + LNRP+K NA++ M E+ D + + RV++L+ AGK
Sbjct: 9 VATITLNRPEKRNALSLEMLD-------------ELAAALDEAEADPDVRVVVLTGAGKA 55
Query: 81 FTAGLDLSGMLSLGQEIAEQEDIGECFDSLSEN-EECRVIVLSAA-GKIFTAGLDLS 135
F AG DL + +L E L V++A G GL+L+
Sbjct: 56 FCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELA 112
>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA
hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase.
Length = 275
Score = 118 bits (298), Expect = 1e-32
Identities = 66/212 (31%), Positives = 100/212 (47%), Gaps = 63/212 (29%)
Query: 7 DTYKTLVV--HVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLS 64
++YKTL + P V H+ LNRP + NA++ + E + SL
Sbjct: 2 ESYKTLEIIQKSPNSSVFHLNLNRPSQRNALSLDFFT-------------EFPKALSSLD 48
Query: 65 ENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAA 124
+N VIILS AG F +G+DL + +S+SE
Sbjct: 49 QNPNVSVIILSGAGDHFCSGIDL-----------------KTLNSISEQ----------- 80
Query: 125 GKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHG 184
+ D R + LR+ I Q +I+++E+C KPVI+A+HG
Sbjct: 81 --------------------SSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHG 120
Query: 185 ACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
ACIGGG+ ++TA DIRY ++DA+F++KEVD+
Sbjct: 121 ACIGGGVDIVTACDIRYCSEDAFFSVKEVDLA 152
>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism].
Length = 257
Score = 100 bits (250), Expect = 9e-26
Identities = 61/209 (29%), Positives = 84/209 (40%), Gaps = 72/209 (34%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
TY+T++V + + LNRP+KLNA +N M E+ E D
Sbjct: 3 TYETILVEREDG-IAVITLNRPEKLNA-------------LNLEMLDELAEALD------ 42
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
E D+ RV+VL+ AGK
Sbjct: 43 ----------------------------EAEADPDV-------------RVVVLTGAGKA 61
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
F+AG DL +LS A + + +LR L PKPVI+AV+G +
Sbjct: 62 FSAGADLKELLSPEDGNAAENLMQPGQDLLRAL-----------ADLPKPVIAAVNGYAL 110
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
GGG+ L A DIR A +DA F L EV++G
Sbjct: 111 GGGLELALACDIRIAAEDAKFGLPEVNLG 139
>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 88.8 bits (221), Expect = 2e-21
Identities = 53/198 (26%), Positives = 75/198 (37%), Gaps = 68/198 (34%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
+ V LNRPDK+NA++ M+ ++L A L ++ R +ILS G
Sbjct: 13 IADVRLNRPDKMNALDFAMF--EELIATIKR-----------LKKDRGIRAVILSGEGGA 59
Query: 81 FTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSL 140
F AGLD+ + S +A +F L G +L
Sbjct: 60 FCAGLDVKSVASSP--------------------------GNAVKLLFKR---LPGNANL 90
Query: 141 GQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIR 200
Q R S R+L P PVI+A+ G C GGG+ + ADIR
Sbjct: 91 AQ---------RVSLGWRRL--------------PVPVIAALEGVCFGGGLQIALGADIR 127
Query: 201 YATKDAWFTLKEVDIGKW 218
A D ++ E KW
Sbjct: 128 IAAPDTKLSIMEA---KW 142
>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 88.8 bits (221), Expect = 2e-21
Identities = 59/210 (28%), Positives = 76/210 (36%), Gaps = 72/210 (34%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
Y+TL + Q V V LNRPD NA N T + E+ F +L ++
Sbjct: 2 MYETLEIEQRGQ-VATVTLNRPDVRNAFNET-------------VIAELTAAFRALDADD 47
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFD-SLSENEECRVIVLSAAGK 126
R ++L+ AGK F AG DL+ M + S EN
Sbjct: 48 SVRAVVLAGAGKAFCAGADLNWM-------------KKMAGYSDDEN------------- 81
Query: 127 IFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGAC 186
L+ ML + RCPKPVI+ VHG
Sbjct: 82 -RADARRLADMLRA------------------------------IYRCPKPVIARVHGDA 110
Query: 187 IGGGMSLITAADIRYATKDAWFTLKEVDIG 216
GGM L+ A DI A A F L EV +G
Sbjct: 111 YAGGMGLVAACDIAVAADHAVFCLSEVRLG 140
>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 88.2 bits (219), Expect = 3e-21
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 10/112 (8%)
Query: 105 ECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTY 164
FD +SE + RV+VL+ AGK+F AG DL G + + + R+++
Sbjct: 37 AVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTR--------- 87
Query: 165 QKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ ++ C KPVI+AV+G +G G+ L+ + DI A+++A F L E+D+G
Sbjct: 88 -ECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVG 138
Score = 59.7 bits (145), Expect = 6e-11
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 22/129 (17%)
Query: 11 TLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECR 70
+ + V V L+ P +NA++ + E+ FD +SE + R
Sbjct: 4 SQLKLEVSDHVAVVTLDNP--------------PVNALSRELRDELIAVFDEISERPDVR 49
Query: 71 VIILSAAGKIFTAGLDLSGMLSLGQEI----AEQEDIGECFDSLSENEECRVIVLSAA-G 125
V++L+ AGK+F AG DL G + + A ECF ++ EC V++A G
Sbjct: 50 VVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAI---RECAKPVIAAVNG 106
Query: 126 KIFTAGLDL 134
AGL L
Sbjct: 107 PALGAGLGL 115
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 87.0 bits (216), Expect = 7e-21
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 11/116 (9%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
++ E D + +++ RV+V+ G+ F+AG D+ S+ E + ++A+
Sbjct: 31 HELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSV-TEAEQATELAQLG------ 83
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
Q + +E+ KPVI+A+HGA +GGG+ L + IR+AT+ A L E+++G
Sbjct: 84 ----QVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLG 135
>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. This family
contains a diverse set of enzymes including: Enoyl-CoA
hydratase. Napthoate synthase. Carnitate racemase.
3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase.
Length = 245
Score = 83.9 bits (208), Expect = 1e-19
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
++ + + L ++ + IVL+ F+AG D+ M + Q+
Sbjct: 28 TELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEMAAEPLA---QQAQFSL------- 77
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
Q S LE PKPVI+AV+G +GGG+ L A D R A +A F L EV +G
Sbjct: 78 --EAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGLPEVKLG 131
Score = 48.8 bits (117), Expect = 4e-07
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 38 TMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEI 97
+ P+ +NA++ + E+ + + L ++ + I+L+ F+AG D+ M +
Sbjct: 12 KLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEMAAEPL-- 69
Query: 98 AEQEDIGECFDSL-SENEECRVIVLSAA-GKIFTAGLDL 134
A+Q L S E+ V++A G GL+L
Sbjct: 70 AQQAQFSLEAQDLWSRLEDLPKPVIAAVNGYALGGGLEL 108
>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 81.5 bits (202), Expect = 1e-18
Identities = 36/148 (24%), Positives = 74/148 (50%), Gaps = 16/148 (10%)
Query: 70 RVIILSAAGKIFTAGLD-LSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIF 128
+++ + T ++ +L + + + + ++ + + RV+VL+ AG+ F
Sbjct: 5 TDLLVELEDGVLTITINRPDKKNALTAAMYQA--LADALEAAATDPAVRVVVLTGAGRAF 62
Query: 129 TAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIG 188
+AG D+ + ++ +A ++ LR I++L PKPV++AV+G +G
Sbjct: 63 SAGGDIKDFPKAPPKPPDE--LAPVNRFLRA--------IAAL---PKPVVAAVNGPAVG 109
Query: 189 GGMSLITAADIRYATKDAWFTLKEVDIG 216
G+SL A D+ YA++ A F+L +G
Sbjct: 110 VGVSLALACDLVYASESAKFSLPFAKLG 137
Score = 52.6 bits (127), Expect = 2e-08
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V+ + +NRPDK NA+ M A+ + ++ + + RV++L+ AG+
Sbjct: 15 VLTITINRPDKKNALTAAM-----YQAL--------ADALEAAATDPAVRVVVLTGAGRA 61
Query: 81 FTAGLDLSGMLSLGQEIAEQED 102
F+AG D+ + ++
Sbjct: 62 FSAGGDIKDFPKAPPKPPDELA 83
>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 78.1 bits (193), Expect = 1e-17
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 102 DIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 161
+ + + + + RV+VL A G+ F AG+D+ +E+ R
Sbjct: 32 ALADAITAAGADPDTRVVVLRAEGRGFNAGVDI-------KELQATPGFTALIDANRGCF 84
Query: 162 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ ++ C PVI+AVHG C+GGG+ L+ AD+ A+ DA F L EVD G
Sbjct: 85 AAF----RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRG 135
Score = 41.1 bits (97), Expect = 2e-04
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 46 NAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQED--- 102
NA+ W + + + + + RV++L A G+ F AG+D+ +E+
Sbjct: 23 NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDI-------KELQATPGFTA 75
Query: 103 -IGE---CFDSLSENEECRVIVLSA 123
I CF + EC V V++A
Sbjct: 76 LIDANRGCFAAFRAVYECAVPVIAA 100
>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 76.2 bits (188), Expect = 8e-17
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 14/110 (12%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAG-KIFTAGLDLSGMLSLGQEIAEQED-VARKSKILR 158
E + E ++++ + R +VL AG K F AG D++ + + ED VA + +I R
Sbjct: 38 EGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQF----RAFSTAEDAVAYERRIDR 93
Query: 159 KLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
+ +LE+ P I+A+ GAC+GGG ++ A D+R AT A F
Sbjct: 94 --------VLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARF 135
>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 70.8 bits (174), Expect = 7e-15
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ F L E R +VL G F AGLDLS E+ E++ R
Sbjct: 32 AALRAAFARLPE--GVRAVVLHGEGDHFCAGLDLS-------ELRERDAGEGMHHSRR-- 80
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKE 212
+ + ++ PVI+A+HGA +GGG+ L +AA IR A + +F L E
Sbjct: 81 ---WHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPE 129
Score = 47.7 bits (114), Expect = 1e-06
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V + LNRP K NA+N D L A + F L E R ++L G
Sbjct: 12 VATIGLNRPAKRNALN------DGLIA-------ALRAAFARLPE--GVRAVVLHGEGDH 56
Query: 81 FTAGLDLS 88
F AGLDLS
Sbjct: 57 FCAGLDLS 64
>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.
Length = 261
Score = 70.5 bits (173), Expect = 1e-14
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 22/121 (18%)
Query: 100 QEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRK 159
++ + E F LSE+ + R IVL+ K+F AG D+ + G
Sbjct: 37 RQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA----------------- 79
Query: 160 LITTYQKSI----SSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDI 215
I Y + ++ +CPKPVI+AV+G +GGG L ADI A + A F E+ +
Sbjct: 80 -IEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKV 138
Query: 216 G 216
G
Sbjct: 139 G 139
Score = 50.4 bits (121), Expect = 1e-07
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 5 TPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLS 64
+++ P V + LNRP+ NA+N M + +L E F LS
Sbjct: 2 MSTATDVVLLERPADGVALLRLNRPEARNALN--MEVRQQL-----------AEHFTELS 48
Query: 65 ENEECRVIILSAAGKIFTAGLDLSGMLSLG 94
E+ + R I+L+ K+F AG D+ + G
Sbjct: 49 EDPDIRAIVLTGGEKVFAAGADIKEFATAG 78
>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional.
Length = 296
Score = 70.4 bits (173), Expect = 2e-14
Identities = 48/171 (28%), Positives = 67/171 (39%), Gaps = 50/171 (29%)
Query: 42 PDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQE 101
PDKLNA TM E+ E FD+ ++ R +I++ AG+ F AG D LS G
Sbjct: 22 PDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGAD----LSAG------- 70
Query: 102 DIGECFDSLSENEECRVIVLSA----AGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKIL 157
G FD + R V + A D G ++L
Sbjct: 71 --GNTFDL----DAPRTPVEADEEDRADPSDDGVRDGGGRVTL----------------- 107
Query: 158 RKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
+ KPVI+AV+G +G G ++ A DIR A+ A F
Sbjct: 108 ------------RIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARF 146
>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 69.3 bits (170), Expect = 3e-14
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 105 ECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTY 164
D + RVIVL+ AG+ F AG D+ + ++ ++ R R+ Y
Sbjct: 40 AAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRR--PDY 97
Query: 165 QKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFT 209
Q L KPVI+A++GAC G G++ D+R+A A FT
Sbjct: 98 QTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFT 142
Score = 50.9 bits (122), Expect = 9e-08
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V + LNRPD+LNA W P M E+ D + RVI+L+ AG+
Sbjct: 16 VAVITLNRPDRLNA-----WTPV--------MEAEVYAAMDRAEADPAVRVIVLTGAGRG 62
Query: 81 FTAGLDLSGMLSLG 94
F AG D+ + ++
Sbjct: 63 FCAGADMGELQTID 76
>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 67.8 bits (166), Expect = 1e-13
Identities = 54/209 (25%), Positives = 78/209 (37%), Gaps = 69/209 (33%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
++T+ + V + V + LNRP+K H NA++ M E+ L+ +
Sbjct: 2 MFETIRIAVDARGVATLTLNRPEK-----H--------NALSARMIAELTTAARRLAADA 48
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
RV++L+ AGK F AG DL M Q A++ EE R
Sbjct: 49 AVRVVVLTGAGKSFCAGGDLGWM--RAQMTADRAT---------RIEEAR---------- 87
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
L+ ML K L L PKP+I + G
Sbjct: 88 -----RLAMML----------------KALNDL--------------PKPLIGRIQGQAF 112
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
GGG+ LI+ D+ A A F L E +G
Sbjct: 113 GGGVGLISVCDVAIAVSGARFGLTETRLG 141
>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.
Length = 243
Score = 67.0 bits (164), Expect = 2e-13
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 111 SENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISS 170
+ +E R IVL+ G +F AG DLSG DV LI + + +
Sbjct: 39 AVDESARAIVLTGQGTVFCAGADLSG------------DVY-ADDFPDALI----EMLHA 81
Query: 171 LERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
++ P PVI+A++G IG G+ L A D+R +A+F
Sbjct: 82 IDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYF 119
Score = 40.4 bits (95), Expect = 3e-04
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 14/69 (20%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V+ +EL RP++ NA+N L ++L + + + +E R I+L+ G +
Sbjct: 10 VLTIELQRPERRNALNAE--LCEELRE-------AVRK-----AVDESARAIVLTGQGTV 55
Query: 81 FTAGLDLSG 89
F AG DLSG
Sbjct: 56 FCAGADLSG 64
>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional.
Length = 256
Score = 66.6 bits (163), Expect = 3e-13
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 13/117 (11%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRK 159
+ + L+ + + RV+VL AG K F G D+ M +L Q AE
Sbjct: 37 LALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAE------------A 84
Query: 160 LITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
I+ + ++ P PVI+ + G C+GGG+ L A D+R A DA F + EV +G
Sbjct: 85 FISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVG 141
Score = 32.3 bits (74), Expect = 0.15
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 44 KLNAMNHTMWLEIGECFDSLSENEECRVIILSAAG-KIFTAGLDLSGMLSLGQEIAE 99
LN + + L + + L+ + + RV++L AG K F G D+ M +L Q AE
Sbjct: 27 SLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAE 83
>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 64.8 bits (158), Expect = 1e-12
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 19/120 (15%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAG-KIFTAGLDL---SGMLSLGQEIAEQEDVARKSKI 156
E++ ++E RV++L+ AG K F AG DL +GM +E V
Sbjct: 34 EELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM--------NEEQV------ 79
Query: 157 LRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
R ++ + ++ +E+ P+PVI+A++G +GGG+ L A D R A + A L E +
Sbjct: 80 -RHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLA 138
>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
Validated.
Length = 275
Score = 64.6 bits (158), Expect = 1e-12
Identities = 49/193 (25%), Positives = 76/193 (39%), Gaps = 68/193 (35%)
Query: 24 VELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTA 83
V LNRP+K NAM+ T+ N M + D+L +++ V++L+ AG ++A
Sbjct: 21 VTLNRPEKRNAMSPTL---------NREM----IDVLDALEFDDDAGVLVLTGAGDAWSA 67
Query: 84 GLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQE 143
G+DL E F E + Q
Sbjct: 68 GMDLK----------------EYF---RETD--------------------------AQP 82
Query: 144 IAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYAT 203
QE + R++ + + YQK P I+ V+G C GGG S + A D+ A
Sbjct: 83 EILQERIRREAYGWWRRLRWYQK----------PTIAMVNGWCFGGGFSPLVACDLAIAA 132
Query: 204 KDAWFTLKEVDIG 216
+A F L E++ G
Sbjct: 133 DEAQFGLSEINWG 145
>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional.
Length = 276
Score = 64.5 bits (157), Expect = 2e-12
Identities = 39/104 (37%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 105 ECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTY 164
E +S + RV+VL+ AG+ F++G D S G + E + R + LR +
Sbjct: 44 EALAEVSYDNSVRVVVLTGAGRGFSSGADHK---SAGV-VPHVEGLTRPTYALRSM-ELL 98
Query: 165 QKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
I +L R +PVI+AV+G IGGG+ L AADIR A+ A+F
Sbjct: 99 DDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYF 142
Score = 42.5 bits (100), Expect = 7e-05
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 1 MASFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECF 60
+A + LV H P+ + + LNRP+++N+M + +P K E
Sbjct: 1 VAGYRSTMSLVLVDH-PRPEIALITLNRPERMNSMAFDVMVPLK-------------EAL 46
Query: 61 DSLSENEECRVIILSAAGKIFTAGLD 86
+S + RV++L+ AG+ F++G D
Sbjct: 47 AEVSYDNSVRVVVLTGAGRGFSSGAD 72
>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.
Length = 265
Score = 64.1 bits (156), Expect = 2e-12
Identities = 47/181 (25%), Positives = 68/181 (37%), Gaps = 58/181 (32%)
Query: 38 TMWL--PDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQ 95
T+WL DK NA N M E+ D + + R ++L G+ F+AG DL+ M Q
Sbjct: 18 TLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWM----Q 73
Query: 96 EIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSK 155
+ A+ LD + L +E+AE
Sbjct: 74 QSAD--------------------------------LDYNTNLDDARELAEL-------- 93
Query: 156 ILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDI 215
+ +L R P ++ V GA GG + LI+ D+ DA F L EV I
Sbjct: 94 ------------MYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRI 141
Query: 216 G 216
G
Sbjct: 142 G 142
>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional.
Length = 302
Score = 64.7 bits (158), Expect = 2e-12
Identities = 46/200 (23%), Positives = 69/200 (34%), Gaps = 48/200 (24%)
Query: 7 DTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSEN 66
D KT+ V + + LNRP+K NA+ P LE+ + +
Sbjct: 7 DNLKTMTYEV-TGRIARITLNRPEKGNAITADT--P-----------LELRAAVERADLD 52
Query: 67 EECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGK 126
VI++S AGK F AG DLS A G
Sbjct: 53 PGVHVILVSGAGKGFCAGYDLSA--------------------------------YAEGS 80
Query: 127 IFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGAC 186
++G Q + D I ++++ + + SL KP ++ VHG C
Sbjct: 81 --SSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYC 138
Query: 187 IGGGMSLITAADIRYATKDA 206
+ GG + D A DA
Sbjct: 139 VAGGTDIALHCDQVIAADDA 158
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 65.3 bits (160), Expect = 2e-12
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 101 EDIGECFDSLSENEECRVIVL-SAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRK 159
E + L E++E + +V S F AG D++ ML+ + E E +AR+
Sbjct: 37 EQVRAILKQLREDKELKGVVFISGKPDNFIAGADIN-MLAACKTAQEAEALARQG----- 90
Query: 160 LITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDA--WFTLKEVDIG 216
Q+ + +E P PV++A+HGAC+GGG+ L A R T D L EV +G
Sbjct: 91 -----QQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLG 144
>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 62.8 bits (153), Expect = 6e-12
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRK 159
E + + + +++ RV+VL+ AG K F +G D+S + ++ E VA +
Sbjct: 41 EALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADIS---QFEESRSDAEAVAAYEQA--- 94
Query: 160 LITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
+ Q +++ KP I+ + G CIGGGM + A DIR A +D+ F
Sbjct: 95 -VEAAQAALAD---YAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRF 139
>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 62.7 bits (153), Expect = 7e-12
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 25/113 (22%)
Query: 103 IGECFDSLSE---NEECRVIVLSAAGKIFTAGLDL----SGMLSLGQEIAEQEDVARKSK 155
F +L+E +++ V+VL+ A F AGLDL + G + A
Sbjct: 33 RRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPA--- 89
Query: 156 ILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
KPVI A++GA + GG+ L A DI A++ A F
Sbjct: 90 ---------------WPAMRKPVIGAINGAAVTGGLELALACDILIASERARF 127
Score = 47.7 bits (114), Expect = 1e-06
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 25/116 (21%)
Query: 24 VELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTA 83
+ LNRP+ NA++ A+ ++ +++ V++L+ A F A
Sbjct: 17 LTLNRPEARNALS---------AALRRALF----AALAEADADDDVDVVVLTGADPAFCA 63
Query: 84 GLDL----SGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAA-GKIFTAGLDL 134
GLDL + G + A + R V+ A G T GL+L
Sbjct: 64 GLDLKELGGDGSAYGAQDALP----NPSPAW---PAMRKPVIGAINGAAVTGGLEL 112
>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 62.7 bits (153), Expect = 7e-12
Identities = 49/177 (27%), Positives = 66/177 (37%), Gaps = 49/177 (27%)
Query: 38 TMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEI 97
T+ P+ NA N M E+ F ++ RVI+L+ AGK F+AG DL G
Sbjct: 18 TLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGS----GTPG 73
Query: 98 AEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKIL 157
D D L G G E + AR+ ++
Sbjct: 74 R---DRDPGPD-------------------QHPTLWWDGATKPGVE----QRYAREWEV- 106
Query: 158 RKLITTYQKSISSLERC------PKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
Y L C PKP I+ V GACI GG+ L D+ A+ DA+F
Sbjct: 107 ------Y------LGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFF 151
>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated.
Length = 266
Score = 62.3 bits (152), Expect = 9e-12
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ D+++ + RV+VL+AAGK F AG DL M + AR R L
Sbjct: 41 AALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRA-----------ARGLAYFRAL 89
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ + ++ P+PVI+ VHG G L+ + D+ A A F + V+IG
Sbjct: 90 FARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIG 145
Score = 47.6 bits (114), Expect = 1e-06
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 13/70 (18%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V + LNRP NA++ M L A + D+++ + RV++L+AAGK
Sbjct: 21 VATLTLNRPQAFNALSEAM-----LAA--------LQAALDAIAADPSVRVVVLAAAGKA 67
Query: 81 FTAGLDLSGM 90
F AG DL M
Sbjct: 68 FCAGHDLKEM 77
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 61.7 bits (150), Expect = 1e-11
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRK 159
+++ D + ++ ++L+ AG K F AG D+S M +++ E+E RK +L
Sbjct: 34 KELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEM----KDLNEEE--GRKFGLLG- 86
Query: 160 LITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
K LE KPVI+A++G +GGG L A DIR A++ A F EV +G
Sbjct: 87 -----NKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLG 138
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 60.1 bits (146), Expect = 6e-11
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 105 ECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLS--LGQEIAE-QEDVARKSKILRKLI 161
+ +D + + + R +L+ AG F AG+DL G + D +R +L+
Sbjct: 39 DAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKG-- 96
Query: 162 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGKW 218
R KP+I+AV G I GG ++ DIR A + A F + E KW
Sbjct: 97 ----------RRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEA---KW 140
>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 59.0 bits (143), Expect = 1e-10
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 113 NEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLE 172
+ + +V++ AGK F AG DL+ + + AE LR++ Y ++
Sbjct: 45 DPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDG--------LRRI---YD-GFLAVA 92
Query: 173 RCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
CP P I+AV+GA +G G++L AAD+R A A F
Sbjct: 93 SCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALF 128
Score = 40.9 bits (96), Expect = 2e-04
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 42 PDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQE 101
PD+ NA+ M ++ + + + ++++ AGK F AG DL+ + + AE
Sbjct: 21 PDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAED- 79
Query: 102 DIGECFDSLSENEECRVIVLSAA-GKIFTAGLDLS 135
+ +D C + ++A G AGL+L+
Sbjct: 80 GLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLA 114
>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 59.2 bits (144), Expect = 1e-10
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 105 ECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTY 164
E ++ + R +VL+ AG F AG +L+ +L + + A L I
Sbjct: 37 EALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQ--AASIDGLHDWIR-- 92
Query: 165 QKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
++ PKPVI+AV GA G G SL A D+ A +DA F + V +G
Sbjct: 93 -----AIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVG 139
>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 58.8 bits (143), Expect = 2e-10
Identities = 50/188 (26%), Positives = 67/188 (35%), Gaps = 69/188 (36%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V + LNRPDKLN+ M H E+ E D + E++ R ++L+ AG+
Sbjct: 14 VATLTLNRPDKLNSFTREM----------H---RELREALDQV-EDDGARALLLTGAGRG 59
Query: 81 FTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSL 140
F AG DL A + T G M L
Sbjct: 60 FCAGQDL------------------------------------ADRDVTPG---GAMPDL 80
Query: 141 GQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIR 200
G+ I T Y + L P PVI+AV+G G G +L A DI
Sbjct: 81 GESIE----------------TFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIV 124
Query: 201 YATKDAWF 208
A + A F
Sbjct: 125 LAARSASF 132
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 58.4 bits (142), Expect = 2e-10
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 19/120 (15%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+D+ ++E RV VL A G+ FTAGLDL+ DVA K+
Sbjct: 29 DDLALALGEYEADDELRVAVLFAHGEHFTAGLDLA-------------DVA--PKLAAGG 73
Query: 161 ITTYQKSISSL----ERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ I R KP++ AV G C+ G+ L+ AADI A + F EV G
Sbjct: 74 FPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRG 133
Score = 45.7 bits (109), Expect = 5e-06
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 42 PDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDL 87
P K NA + M ++ ++E RV +L A G+ FTAGLDL
Sbjct: 17 PAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDL 62
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 57.8 bits (140), Expect = 3e-10
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 102 DIGECFDSLSENE-ECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ E D++ + + E R +VL+ AG+ F G +L G S G+E D L
Sbjct: 35 GLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAA------L 88
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
T Y + L P P+++AV+G G GMS D+ + A+F
Sbjct: 89 ETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYF 136
>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional.
Length = 268
Score = 57.3 bits (139), Expect = 5e-10
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 12/101 (11%)
Query: 110 LSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDV-ARKSKILRKLITTYQKSI 168
+ + + RV+++ GK F+AG G L+L +E+A+ +V AR + R L+
Sbjct: 51 VDRDPDVRVVLIRGEGKAFSAG----GDLALVEEMADDFEVRARVWREARDLVY------ 100
Query: 169 SSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFT 209
++ C KP++SA+HG +G G+ ADI A KDA
Sbjct: 101 -NVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARII 140
Score = 41.2 bits (97), Expect = 2e-04
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 5 TPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLS 64
Y L P V+ + LN P LNA + M H E+ + + +
Sbjct: 6 RYADYPALRFDRPPPGVLEIVLNGPGALNAADARM----------HR---ELADIWRDVD 52
Query: 65 ENEECRVIILSAAGKIFTAGLDLS 88
+ + RV+++ GK F+AG DL+
Sbjct: 53 RDPDVRVVLIRGEGKAFSAGGDLA 76
>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 57.1 bits (138), Expect = 6e-10
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
++I E E+ R ++++A GK+F+ G DL M + +++DV KI +L
Sbjct: 32 QEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEM----KRAVDEDDVQSLVKIA-EL 86
Query: 161 ITTYQKSIS-SLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ IS ++++ PKPVI V GA G ++ AAD A+ F V +G
Sbjct: 87 VNE----ISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVG 139
>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
hydratase paaB. This family of proteins are found
within apparent operons for the degradation of
phenylacetic acid. These proteins contain the enoyl-CoA
hydratase domain as detected by pfam00378. This activity
is consistent with current hypotheses for the
degradation pathway which involve the ligation of
phenylacetate with coenzyme A (paaF), hydroxylation
(paaGHIJK), ring-opening (paaN) and degradation of the
resulting fatty acid-like compound to a Krebs cycle
intermediate (paaABCDE).
Length = 256
Score = 57.2 bits (138), Expect = 6e-10
Identities = 45/179 (25%), Positives = 62/179 (34%), Gaps = 57/179 (31%)
Query: 38 TMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEI 97
T+ PDKLN+ M LE+ E + + E ++ R ++L+ AG+ F AG DLS
Sbjct: 13 TLNRPDKLNSFTAEMHLELREALERV-ERDDARALMLTGAGRGFCAGQDLS--------- 62
Query: 98 AEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKIL 157
E G LG+ I
Sbjct: 63 -----------------ERNP--------------TPGGAPDLGRTIETF---------- 81
Query: 158 RKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
Y + L P PV+ AV+G G G +L A DI A + A F IG
Sbjct: 82 ------YNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIG 134
>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 57.0 bits (138), Expect = 7e-10
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 117 RVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPK 176
R +VL+ G F AG DLS G + D A R++ + + PK
Sbjct: 52 RAVVLTHTGGTFCAGADLS---EAGGGGGDPYDAAVARA--REMTALLRAIVEL----PK 102
Query: 177 PVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
PVI+A+ G GG L+ A DI A ++ F L E IG
Sbjct: 103 PVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIG 142
Score = 27.7 bits (62), Expect = 4.0
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 42 PDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLS 88
P NA++ + ++ + + + + R ++L+ G F AG DLS
Sbjct: 24 PHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLS 70
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 55.8 bits (135), Expect = 1e-09
Identities = 44/194 (22%), Positives = 68/194 (35%), Gaps = 72/194 (37%)
Query: 13 VVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVI 72
VV + V + LNRP+ LNA++ M L E+ + ++E+ ++
Sbjct: 8 VVVKYEGRVATIMLNRPEALNALDEPM-----LK--------ELLQALKEVAES-SAHIV 53
Query: 73 ILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGL 132
+L G+ F+AG D+ MLS E +++SE IV++
Sbjct: 54 VLRGNGRGFSAGGDIKMMLSSNDE----SKFDGVMNTISE------IVVT---------- 93
Query: 133 DLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMS 192
L M PK ISA+HG G G+S
Sbjct: 94 -LYTM-------------------------------------PKLTISAIHGPAAGLGLS 115
Query: 193 LITAADIRYATKDA 206
+ AD A A
Sbjct: 116 IALTADYVIADISA 129
>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase.
Length = 265
Score = 55.9 bits (135), Expect = 2e-09
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 15/102 (14%)
Query: 107 FDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQK 166
F L E++ +VI+L+ +G+ F +G+DL+ E+V + + Q
Sbjct: 46 FKRLDEDDSVKVIILTGSGRAFCSGVDLTA----------AEEVFKGDVKDVETDPVAQ- 94
Query: 167 SISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
+ERC KP+I A++G I G + A DI A++ A F
Sbjct: 95 ----MERCRKPIIGAINGFAITAGFEIALACDILVASRGAKF 132
Score = 51.3 bits (123), Expect = 6e-08
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 42 PDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQE 101
P LNA+ M +E+ F L E++ +VIIL+ +G+ F +G+DL+ +E+ + +
Sbjct: 28 PKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTA----AEEVFKGD 83
Query: 102 DIGECFDSLSENEECRVIVLSA-AGKIFTAGLDLS 135
D +++ E CR ++ A G TAG +++
Sbjct: 84 VKDVETDPVAQMERCRKPIIGAINGFAITAGFEIA 118
>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 55.9 bits (135), Expect = 2e-09
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 9/113 (7%)
Query: 105 ECFDSLSENEECRVIVLSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITT 163
D++ +E R ++L+ AG + F+AG D+ +A DVA LR +
Sbjct: 37 ARLDAIEVDESVRAVILTGAGDRAFSAGADIHE---FSASVAAGADVA-----LRDFVRR 88
Query: 164 YQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
Q + LE PKPVI+AV+G GGG + A + A++ A F E+ +G
Sbjct: 89 GQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLG 141
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human , pig , and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 56.0 bits (135), Expect = 3e-09
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 14/115 (12%)
Query: 92 SLGQEIAEQEDIGECFDSLSENEECRVIVL-SAAGKIFTAGLDLSGMLSLGQEIAEQEDV 150
+L +E+ + E + L NE + VL S F AG D+ M++ + E +
Sbjct: 37 TLSKELFAE--FKEVMNELWTNEAIKSAVLISGKPGSFVAGADI-QMIAACKTAQEVTQL 93
Query: 151 ARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKD 205
+++ Q+ +E+ KP+++A+ G+C+GGG+ L A R ATKD
Sbjct: 94 SQEG----------QEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKD 138
>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.
Length = 255
Score = 55.2 bits (133), Expect = 3e-09
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ ++ + + V V++ + F AG DL E+AE++ A L
Sbjct: 32 TQLVNELEAAATDTSIGVCVITGNARFFAAGADL-------NEMAEKDLAA----TLNDP 80
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ + + KP+I+AV+G +G G L DI A ++A F L E+ +G
Sbjct: 81 RPQLWQRLQAFN---KPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLG 133
>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
Length = 298
Score = 55.0 bits (132), Expect = 4e-09
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQE---DVARKSKIL 157
++I +++ +VIVL AG+ F+ G D G E + D + ++
Sbjct: 35 DEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMV 94
Query: 158 RKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDA 206
T + ++ R KPVI+ VHG C+GG ADI A+ DA
Sbjct: 95 TARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDA 143
>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional.
Length = 261
Score = 53.9 bits (130), Expect = 7e-09
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 101 EDIGECFDSLSENEECRVIVLSAA--GKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILR 158
+D+ + L+ E RV++L A K+++AG D+ + S G+ D LR
Sbjct: 34 DDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGR------DPLSYDDPLR 86
Query: 159 KLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+++ +++ PKPVI+ V G+ GG LI + D+ A + F + ++G
Sbjct: 87 QIL-------RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLG 137
Score = 35.8 bits (83), Expect = 0.011
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 34 AMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAA--GKIFTAGLDLS 88
N+ P K NA++ + ++ + L+ E RV+IL A K+++AG D+
Sbjct: 18 TFNN----PAKRNALSKVLIDDLMQALSDLNRP-EIRVVILRAPSGSKVWSAGHDIH 69
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 54.8 bits (132), Expect = 8e-09
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 16/130 (12%)
Query: 90 MLSLGQEIAEQEDIGECFDSLSENEECR-VIVLSAAGKIFTAGLDLSGMLSLGQEIAEQE 148
M +L E A+Q + E L ++ R ++++S F AG D+S ML+ Q E +
Sbjct: 23 MNTLKAEFADQ--VSEILSQLKRDKSIRGLVLVSGKPDNFIAGADIS-MLAACQTAGEAK 79
Query: 149 DVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKD--A 206
+A++ ++L + LE P PV++A+HGAC+GGG+ L A R + D
Sbjct: 80 ALAQQGQVL----------FAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKT 129
Query: 207 WFTLKEVDIG 216
L EV +G
Sbjct: 130 VLGLPEVQLG 139
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 52.7 bits (127), Expect = 2e-08
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 105 ECFDSLSENEECRVIVLSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITT 163
E FD + + E V +++ AG K F+AG DL + G+ +
Sbjct: 38 EVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFG------------ 85
Query: 164 YQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
++S KP+I+AV+G +GGG L A D+ A ++A F L E +G
Sbjct: 86 ---GLTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVG 135
Score = 37.7 bits (88), Expect = 0.003
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 14/71 (19%)
Query: 18 KQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAA 77
K V V LNRP+ +NA++ L+A H E+ E FD + + E V I++ A
Sbjct: 11 KGHVTIVTLNRPEVMNALH--------LDA--H---FELEEVFDDFAADPEQWVAIVTGA 57
Query: 78 G-KIFTAGLDL 87
G K F+AG DL
Sbjct: 58 GDKAFSAGNDL 68
>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
Length = 261
Score = 52.8 bits (127), Expect = 2e-08
Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 32/124 (25%)
Query: 103 IGECFDSLSENEECRVIVLSAAG-KIFTAGLDL---------SGMLSLGQEIAEQEDVAR 152
+GE F + ++ E RV +++ AG K F+AG DL G E
Sbjct: 34 MGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTE---- 89
Query: 153 KSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKE 212
+ L KPVI+AV+G GGG L AAD +A F L E
Sbjct: 90 ----IFDL--------------DKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPE 131
Query: 213 VDIG 216
+G
Sbjct: 132 AKLG 135
Score = 37.4 bits (87), Expect = 0.003
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 15/68 (22%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAG-K 79
++ + L+RP K NA++ +GE F + ++ E RV I++ AG K
Sbjct: 13 ILEITLDRP--------------KANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEK 58
Query: 80 IFTAGLDL 87
F+AG DL
Sbjct: 59 FFSAGWDL 66
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 52.3 bits (126), Expect = 3e-08
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 102 DIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLS--LGQEIAEQEDVARKSKILRK 159
++ + F L ++ + +VL+ AG F +G D+ ++ ++ E R + L K
Sbjct: 48 ELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVK 107
Query: 160 LITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
++ CP+P+I+AV G C G G L A+D+R T A
Sbjct: 108 ----------AMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKT 146
Score = 28.8 bits (65), Expect = 2.1
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 25/95 (26%)
Query: 1 MASFTPDTYKTLVVHVPKQFVVHVE-------LNRPDKLNAMNHTMWLPDKLNAMNHTM- 52
M+ F + L + + F+ V+ LNRP++ N + T
Sbjct: 1 MSPFRGSK-RPLAGYEARHFLWEVDDGVATITLNRPERKNPL---------------TFE 44
Query: 53 -WLEIGECFDSLSENEECRVIILSAAGKIFTAGLD 86
+ E+ + F L ++ + ++L+ AG F +G D
Sbjct: 45 SYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGD 79
>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 51.1 bits (123), Expect = 6e-08
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 22/120 (18%)
Query: 96 EIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSK 155
+A+ + D L + + V +L+ AG F AG+DL +
Sbjct: 30 AVAQG--LAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFA------------RGERP 75
Query: 156 ILRKLITTYQKSISSLERCP--KPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEV 213
+ + L P KP+I+AV G + GG L A D+ A +DA F L EV
Sbjct: 76 SIPG------RGFGGLTERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEV 129
Score = 40.7 bits (96), Expect = 2e-04
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 38 TMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGML 91
T+ P+ NA+N + + D L + + V IL+ AG F AG+DL
Sbjct: 17 TINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFA 70
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 51.0 bits (123), Expect = 1e-07
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+GE D+L + + ++L++A F G D++ LSL E+ L +
Sbjct: 37 ASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEE---------LSQW 87
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ + LE P P ++A++G +GGG + A D R A+ DA L E +G
Sbjct: 88 LHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLG 143
>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
Length = 251
Score = 49.8 bits (119), Expect = 2e-07
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 107 FDSLSENEECRVIVL-SAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQ 165
F+ + + RV++L S+ +F AG DL +E ++K + + +
Sbjct: 31 FEKIQADASARVVMLRSSVPGVFCAGADL------------KERRKMSPSEVQKFVNSLR 78
Query: 166 KSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKE 212
+ SSLE P I+ V GA +GGG+ L + D+R ++A F L E
Sbjct: 79 STFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPE 125
Score = 27.5 bits (61), Expect = 5.3
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIIL-SAAGK 79
+V + L+RP+ NA+ M L + F+ + + RV++L S+
Sbjct: 5 IVELRLDRPEAKNAIGKEM-----LRGLRSA--------FEKIQADASARVVMLRSSVPG 51
Query: 80 IFTAGLDL 87
+F AG DL
Sbjct: 52 VFCAGADL 59
>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 49.6 bits (119), Expect = 3e-07
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ + +++ + R ++L+ AG F++G ++ M A +R
Sbjct: 34 DALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMR------ARVGAFGGSPADIR-- 85
Query: 161 ITTYQKSIS----SLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
Y+ I +L PVI+AV+G IG G L DIR A++ A F
Sbjct: 86 -QGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARF 136
Score = 34.6 bits (80), Expect = 0.028
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
+V + +NRP+ NA++ + +++ + R +IL+ AG
Sbjct: 13 IVTLTMNRPETRNALSDN------------DAVDALVAACAAINADRSVRAVILTGAGTA 60
Query: 81 FTAGLDLSGM 90
F++G ++ M
Sbjct: 61 FSSGGNVKDM 70
>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 249
Score = 49.2 bits (118), Expect = 3e-07
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ + E FD+++++ +V++L+ F G G+LSL +
Sbjct: 35 DQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEA---------- 84
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADI 199
S CP PVI+A+ G IGGG+ L ADI
Sbjct: 85 -----NLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADI 118
Score = 33.4 bits (77), Expect = 0.056
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 38 TMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEI 97
TM NA + + ++ E FD+++++ +V+IL+ F G G+LSL
Sbjct: 19 TMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK 78
Query: 98 AEQEDIGECFDSLSENEECRVIVLSA 123
+ + S C + V++A
Sbjct: 79 GTFTEA----NLYSLALNCPIPVIAA 100
>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadB. This model excludes the
FadJ family represented by SP:P77399 [Fatty acid and
phospholipid metabolism, Degradation].
Length = 714
Score = 49.4 bits (118), Expect = 4e-07
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 103 IGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLIT 162
+ + D++ + ++L++ F G D++ L L A L + +
Sbjct: 39 LDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGL---------FALPDAELIQWLL 89
Query: 163 TYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ LE P P ++A++G +GGG + A D R A A L E +G
Sbjct: 90 FANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLG 143
>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional.
Length = 248
Score = 46.7 bits (111), Expect = 2e-06
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 108 DSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKS 167
++ + + RV++++ G+ F G DLS + A L T+
Sbjct: 37 KQINADPKIRVVIVTGEGRAFCVGADLS---EFAPDFAID------------LRETFYPI 81
Query: 168 ISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
I + K ISA++G G + + + D ++A++D F +G
Sbjct: 82 IREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLG 130
Score = 44.0 bits (104), Expect = 2e-05
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 38 TMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEI 97
TM PDKLNA+N M E ++ + + RV+I++ G+ F G DLS +
Sbjct: 14 TMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLS---EFAPDF 70
Query: 98 AEQEDIGECFDS-LSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQE 148
A D+ E F + E I +SA + TAG + LS + A ++
Sbjct: 71 A--IDLRETFYPIIREIRFSDKIYISAINGV-TAGACIGIALSTDFKFASRD 119
>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 379
Score = 47.1 bits (112), Expect = 2e-06
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 103 IGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLIT 162
+ E + +++ +I++ AG+ F+AG DL + +V + L I
Sbjct: 43 LAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIH 102
Query: 163 TYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
TY+K ++ VHG +GGG L+ R T+ F E +G
Sbjct: 103 TYKK----------TQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVG 146
>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase.
Length = 327
Score = 44.8 bits (106), Expect = 1e-05
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 106 CFDSLSENEECRVIVLSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTY 164
F+ ++ VI+L+ G K F +G D + G +D R L L
Sbjct: 102 AFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGY--VGPDDAGR----LNVLDLQI 155
Query: 165 QKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
Q + R PKPVI+ V G +GGG L D+ A +A F
Sbjct: 156 Q-----IRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVF 194
Score = 28.2 bits (63), Expect = 3.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 42 PDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAG-KIFTAGLDLS 88
P++ NA E+ F+ ++ VIIL+ G K F +G D +
Sbjct: 85 PERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQA 132
>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 255
Score = 43.9 bits (104), Expect = 2e-05
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 103 IGECFDSLSENEE-CRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 161
I EC D L E ++VL ++F G D S + ++ ++ L L
Sbjct: 33 IAECMDVLDRCEHAATIVVLEGLPEVFCFGADFSAI---AEKPDAGRADLIDAEPLYDLW 89
Query: 162 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
L P I+ V G GG+ + A+DI A + A F+L E+ G
Sbjct: 90 HR-------LATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFG 137
>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated.
Length = 222
Score = 43.3 bits (102), Expect = 3e-05
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 102 DIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLI 161
+I + L ++ ++L +IF+AG D+ + +L + A+ R
Sbjct: 38 EIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVR--------- 88
Query: 162 TTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEV 213
Q+++ ++ PKP ++A+ G +G G++L AAD R + + F E+
Sbjct: 89 ---QQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEI 137
Score = 28.7 bits (64), Expect = 2.3
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 46 NAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQED 102
NA+ ++ EI + L ++ +IL +IF+AG D+ + +L + A+
Sbjct: 29 NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAA 85
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 42.3 bits (100), Expect = 6e-05
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 14/116 (12%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+++G + +E IV++ + K F AG D+ M L + D
Sbjct: 34 DELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGD----------Y 83
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
IT ++K + R KPVI+AV G +GGG L DI A A F E+ +G
Sbjct: 84 ITNWEK----VARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLG 135
Score = 36.2 bits (84), Expect = 0.008
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
Y+T++V + V + LNRP LNA+N + M+ E+G + +E
Sbjct: 2 AYETILVET-RGRVGLITLNRPKALNALNDAL--------MD-----ELGAALAAFDADE 47
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSL 93
I+++ + K F AG D+ M L
Sbjct: 48 GIGAIVITGSEKAFAAGADIKEMADL 73
>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid
synthetase). This model represents an enzyme,
naphthoate synthase (dihydroxynaphthoic acid
synthetase), which is involved in the fifth step of the
menaquinone biosynthesis pathway. Together with
o-succinylbenzoate-CoA ligase (menE: TIGR01923), this
enzyme takes 2-succinylbenzoate and converts it into
1,4-di-hydroxy-2-naphthoate. Included above the trusted
cutoff are two enzymes from Arabadopsis thaliana and one
from Staphylococcus aureus which are identified as
putative enoyl-CoA hydratase/isomerases. These enzymes
group with the naphthoate synthases when building a tree
and when doing BLAST searches [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 259
Score = 42.5 bits (100), Expect = 7e-05
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 12/116 (10%)
Query: 102 DIGECFDSLSENEECRVIVLSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+I + D E+ + V++L+ AG K F +G D Q++ S + R
Sbjct: 34 EIIQALDDAREDPDIGVVILTGAGDKAFCSGGD--------QKVRGDYGYIDDSGVHRLN 85
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ Q+ I + CPKPVI+ V+G IGGG L D+ A ++A F +G
Sbjct: 86 VLDVQRQIRT---CPKPVIAMVNGYAIGGGHVLHMMCDLTIAAENARFGQTGPKVG 138
>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 42.2 bits (100), Expect = 7e-05
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 14/102 (13%)
Query: 107 FDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQK 166
F + ++ V VL AG F AG DL ++G + + +
Sbjct: 39 FRAFDADDAASVAVLWGAGGTFCAGADLK---AVGTGRGNRLHPSGDGPM---------- 85
Query: 167 SISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
S + R KPVI+AV G + GG+ L D+R A +DA F
Sbjct: 86 GPSRM-RLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVF 126
Score = 30.6 bits (70), Expect = 0.46
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 13/68 (19%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V V LNRP+ NA++ L F + ++ V +L AG
Sbjct: 13 VTTVILNRPEVRNAVDGPT--AAALAD-----------AFRAFDADDAASVAVLWGAGGT 59
Query: 81 FTAGLDLS 88
F AG DL
Sbjct: 60 FCAGADLK 67
>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA
hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA
hydratase, also called dienoyl-CoA hydratase, acts on
the product of benzoyl-CoA reductase (EC 1.3.99.15).
Benzoyl-CoA is a common intermediate in the degradation
of many aromatic compounds, and this enzyme is part of
an anaerobic pathway for dearomatization and
degradation.
Length = 251
Score = 40.3 bits (94), Expect = 4e-04
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 112 ENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQ--EDVARKSKILRKLITTYQKSIS 169
E+ R ++L A G F S G +AE + A L KL+ S
Sbjct: 41 EDSALRAVLLDAEGPHF----------SFGASVAEHMPDQCAAMLASLHKLVIAMLDS-- 88
Query: 170 SLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
P P++ AV G C+GGG+ + A ++ +A DA E+ +G
Sbjct: 89 -----PVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLG 130
>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase;
Provisional.
Length = 278
Score = 39.5 bits (92), Expect = 7e-04
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 125 GKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHG 184
G +F +GL + + G +IAE + + T + L R + A+ G
Sbjct: 58 GVVFASGLRRD-VFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRG 116
Query: 185 ACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
AC GG ++ D R T + L EV +G
Sbjct: 117 ACPAGGCAVSLCCDYRLQTTEGTMGLNEVALG 148
>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein.
Length = 239
Score = 38.5 bits (90), Expect = 0.001
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
Query: 118 VIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKP 177
V++ +A GK F+ G DL A+ A L ++ + ++ L P P
Sbjct: 47 VLITTAEGKFFSNGFDL--------AWAQAAGSAPSR--LHLMVAKLRPLVADLISLPMP 96
Query: 178 VISAVHGACIGGGMSLITAADIRYATKDAWFT-LKEVDIG 216
I+AV G G L + D KD + EVDIG
Sbjct: 97 TIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIG 136
>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.
Length = 273
Score = 38.3 bits (90), Expect = 0.001
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 105 ECFDSLSENEECRVIVLSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITT 163
+ F +++ VI+L+ AG K F +G D Q++ + R +
Sbjct: 47 DAFADARDDDNIGVIILTGAGDKAFCSGGD--------QKVRGYGGYVDDDGVPRLNVLD 98
Query: 164 YQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
Q+ I + CPKPVI+ V G IGGG L D+ A +A F
Sbjct: 99 LQRLIRT---CPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIF 140
>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme
metabolism].
Length = 282
Score = 37.8 bits (88), Expect = 0.003
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 107 FDSLSENEECRVIVLSAAG---KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITT 163
F ++ VI+L+ G K F +G D G + + I R +
Sbjct: 55 FADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDG-------IPRLNVLD 107
Query: 164 YQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
Q+ I + PKPVI+ V G IGGG L D+ A +A F
Sbjct: 108 LQRLIRT---MPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIF 149
>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase. Members
of this protein family are 2-ketocyclohexanecarboxyl-CoA
hydrolase, a ring-opening enzyme that acts in catabolism
of molecules such as benzoyl-CoA and cyclohexane
carboxylate. It converts -ketocyclohexanecarboxyl-CoA to
pimelyl-CoA. It is not sensitive to oxygen.
Length = 256
Score = 36.5 bits (84), Expect = 0.006
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 169 SSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
S++ PKPVI+ V G IGGG L+T D+ A++ A F
Sbjct: 88 SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQF 127
>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional.
Length = 229
Score = 35.3 bits (82), Expect = 0.012
Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 18/119 (15%)
Query: 100 QEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRK 159
+ + D ++ V+V++ IF+ G DL M S G + A
Sbjct: 31 IDALNAALDQAEDDR--AVVVITGQPGIFSGGFDLKVMTS-GAQAA------------IA 75
Query: 160 LITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFT--LKEVDIG 216
L+T L PKPVI A G I G L+ +AD R F L EV IG
Sbjct: 76 LLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGV-HGPFKIGLNEVAIG 133
>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated.
Length = 302
Score = 35.4 bits (82), Expect = 0.013
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 135 SGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLI 194
G + A+ D AR R I Q+ I + PK VI+ V G GGG SL
Sbjct: 101 DGYQYAEGDEADTVDPARAG---RLHILEVQRLIRFM---PKVVIAVVPGWAAGGGHSLH 154
Query: 195 TAADIRYATKD-AWFTLKEVDIG 216
D+ A+++ A F + D+G
Sbjct: 155 VVCDLTLASREHARFKQTDADVG 177
>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA
hydrolase. Members of this protein family are
6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a
ring-hydrolyzing enzyme in the anaerobic metabolism of
aromatic enzymes by way of benzoyl-CoA, as seen in
Thauera aromatica, Geobacter metallireducens, and
Azoarcus sp. Note that Rhodopseudomonas palustris uses a
different pathway to perform a similar degradation of
benzoyl-CoA to 3-hydroxpimelyl-CoA.
Length = 360
Score = 33.7 bits (77), Expect = 0.050
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 158 RKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWF 208
R+ + + +S++ C KPVI V+G IGGG + AAD A A F
Sbjct: 107 RQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANF 157
>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase.
Length = 381
Score = 33.9 bits (77), Expect = 0.056
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 24/120 (20%)
Query: 105 ECFDSLSENEECRVIVLSAAGKIFTAGLDLS--------GMLSLGQEIAEQEDVARKSKI 156
+ F + E+ ++++L G+ F AG D++ G LG E +
Sbjct: 43 QLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDE------YM 96
Query: 157 LRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
L ++ TY K+ +S ++G +GGG + R AT++ F + E +G
Sbjct: 97 LNYVMATYSKA----------QVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALG 146
Score = 33.2 bits (75), Expect = 0.093
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 12 LVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRV 71
+ V + Q V VE ++ +N P +LNA++ M + + F + E+ ++
Sbjct: 1 MAVEMASQSQVLVEEKSSVRILTLNR----PKQLNALSFHMISRLLQLFLAFEEDPSVKL 56
Query: 72 IILSAAGKIFTAGLDLSGML 91
+IL G+ F AG D++ ++
Sbjct: 57 VILKGHGRAFCAGGDVAAVV 76
>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 407
Score = 33.0 bits (75), Expect = 0.11
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 107 FDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQK 166
++S EN + +++ +G+ F +G D+ +SL I E + + K
Sbjct: 78 YESWEENPDIGFVLMKGSGRAFCSGADV---VSLYHLINEG-----NVEECKLFFENLYK 129
Query: 167 SISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ KP ++ + G +G G + R T F EV +G
Sbjct: 130 FVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMG 179
Score = 31.9 bits (72), Expect = 0.22
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 42 PDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAE 99
P LNA+ M + ++S EN + +++ +G+ F +G D+ +SL I E
Sbjct: 60 PSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADV---VSLYHLINE 114
>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.
Length = 342
Score = 32.1 bits (74), Expect = 0.17
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 102 DIGECFDSLSENEECRVIVLSAAGKI-FTAGLDLSGMLSLGQEIAEQEDVA--RKSKILR 158
I D+ +++ +V+ AG+ F AG D+ + + R+ L
Sbjct: 34 AIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLN 93
Query: 159 KLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
LI Y PKP I+ + G +GGG+ + R T+ + E IG
Sbjct: 94 ALIARY----------PKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIG 141
Score = 32.1 bits (74), Expect = 0.18
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 23 HVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI-F 81
+ LNRP LNA++ M + A I D+ +++ +++ AG+ F
Sbjct: 15 VITLNRPKALNALSLEM-----IRA--------IDAALDAWEDDDAVAAVVIEGAGERGF 61
Query: 82 TAGLD 86
AG D
Sbjct: 62 CAGGD 66
>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional.
Length = 251
Score = 32.1 bits (73), Expect = 0.19
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 27/112 (24%)
Query: 112 ENEECRVIVLSAAGKIFTAGLDLSGML-------SLGQEIAEQEDVARKSKILRKLITTY 164
++ R V F+AG D+ L S G EI + L L
Sbjct: 47 ADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILD---------FLIALAEA- 96
Query: 165 QKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
KP++S V G IG G ++ D+ +A+ + F VD+
Sbjct: 97 ----------EKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLA 138
>gnl|CDD|234581 PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.
Length = 244
Score = 30.8 bits (71), Expect = 0.36
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 103 IGECFDSL--SENEECRVIVLSAAGKIFT 129
+ + D+ + E+ +VI+LS GK FT
Sbjct: 67 LFDAIDAAKAAAGEKAKVILLSPQGKPFT 95
Score = 30.4 bits (70), Expect = 0.58
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 56 IGECFDSL--SENEECRVIILSAAGKIFT 82
+ + D+ + E+ +VI+LS GK FT
Sbjct: 67 LFDAIDAAKAAAGEKAKVILLSPQGKPFT 95
>gnl|CDD|223413 COG0336, TrmD, tRNA-(guanine-N1)-methyltransferase [Translation,
ribosomal structure and biogenesis].
Length = 240
Score = 30.2 bits (69), Expect = 0.61
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFT 129
E + + DS+ ++ +VI+LS GK FT
Sbjct: 65 EPLFDALDSVKAAKKAKVILLSPQGKPFT 93
Score = 30.2 bits (69), Expect = 0.64
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 56 IGECFDSLSENEECRVIILSAAGKIFT 82
+ + DS+ ++ +VI+LS GK FT
Sbjct: 67 LFDALDSVKAAKKAKVILLSPQGKPFT 93
>gnl|CDD|223830 COG0759, COG0759, Uncharacterized conserved protein [Function
unknown].
Length = 92
Score = 28.4 bits (64), Expect = 0.96
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 152 RKSKILRKLITTYQKSISSLER--------CPKPVISAV--HGACIGGGMSLI 194
K+L LI YQ+ IS L C + I A+ HG G ++L
Sbjct: 5 LMKKLLIFLIRFYQRFISPLLPPSCRFYPTCSEYAIEALKKHGLLKGLWLTLK 57
>gnl|CDD|205785 pfam13607, Succ_CoA_lig, Succinyl-CoA ligase like flavodoxin
domain. This domain contains the catalytic domain from
Succinyl-CoA ligase alpha subunit and other related
enzymes. A conserved histidine is involved in phosphoryl
transfer.
Length = 138
Score = 28.2 bits (64), Expect = 1.8
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 84 GLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVL 121
G+ S +SLG E D + D L+++ E RVI+L
Sbjct: 25 GIGFSHFVSLGNEA--DVDFADLLDYLADDPETRVILL 60
>gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase. In the
presence of O2, the benzoyl-CoA oxygenase/reductase
BoxBA BoxAB converts benzoyl-CoA to
2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this
family, BoxC, homologous to enoyl-CoA
hydratases/isomerases, hydrolyze this compound to
3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Length = 546
Score = 29.0 bits (65), Expect = 2.0
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 19/144 (13%)
Query: 74 LSAAGKIFTAGLDL--SGMLSLGQEIA-EQEDIG---ECFDSLS----ENEECRVIVL-S 122
L+ G + T +D+ G L G ++ D+G E D++ E+ E R +V+ S
Sbjct: 15 LTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTS 74
Query: 123 AAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 182
++F +G ++ ML L A K + T S ++AV
Sbjct: 75 GKDRVFCSGANIF-MLGLSTH-------AWKVNFCKFTNETRNGIEDSSRHSGLKFLAAV 126
Query: 183 HGACIGGGMSLITAADIRYATKDA 206
+G C GGG L A D D
Sbjct: 127 NGTCAGGGYELALACDEIMLVDDR 150
>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 28.7 bits (65), Expect = 2.0
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 13/108 (12%)
Query: 110 LSENEECRVIVLSAAG-KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSI 168
L+ +++ +V++ G K F+AG DL+ + +A ++AR+ + ++
Sbjct: 41 LNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAR--EMARR----------FGEAF 88
Query: 169 SSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+L I+A++G +GGG+ A DIR A + A L E +G
Sbjct: 89 EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVG 136
>gnl|CDD|217200 pfam02720, DUF222, Domain of unknown function (DUF222). This
family is often found associated to the N-terminus of
the HNH endonuclease domain pfam01844. The function of
this domain is uncertain. This family has been called
the 13E12 repeat family.
Length = 306
Score = 28.0 bits (63), Expect = 3.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 179 ISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVD 214
A GA + GG L+ A+D+R DA TL D
Sbjct: 245 TVAAGGAALTGGGGLLPASDVRRLACDA--TLAVFD 278
>gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase. Members of this
subfamily are probable C-S lyases from a family of
pyridoxal phosphate-dependent enzymes that tend to be
(mis)annotated as probable aminotransferases. One member
is PatB of Bacillus subtilis, a proven C-S-lyase.
Another is the virulence factor cystalysin from
Treponema denticola, whose hemolysin activity may stem
from H2S production. Members of the seed alignment occur
next to examples of the enzyme 5-histidylcysteine
sulfoxide synthase, from ovothiol A biosynthesis, and
would be expected to perform a C-S cleavage of
5-histidylcysteine sulfoxide to leave
1-methyl-4-mercaptohistidine (ovothiol A).
Length = 384
Score = 28.0 bits (63), Expect = 4.2
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 107 FDSLSENEECRVIVLSAAGKIFT-AGLDLS 135
SLS R + L + GK F AGL++S
Sbjct: 212 LASLSPEIAERTVTLLSPGKTFNIAGLNIS 241
Score = 27.7 bits (62), Expect = 4.6
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 60 FDSLSENEECRVIILSAAGKIFT-AGLDLS 88
SLS R + L + GK F AGL++S
Sbjct: 212 LASLSPEIAERTVTLLSPGKTFNIAGLNIS 241
>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction
only].
Length = 444
Score = 27.9 bits (63), Expect = 4.9
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 127 IFTAGLDLSGMLSLGQEIAEQ-EDVARKSKIL------RKLITTYQKSISS-LERCPKPV 178
I T GLD L + I EQ ++ ++ R+ IT + I+ L R KPV
Sbjct: 56 IDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPV 115
Query: 179 ISAV 182
I V
Sbjct: 116 ILVV 119
>gnl|CDD|212483 cd01736, LSm14_N, Like-Sm protein 14, N-terminal domain. LSm14
(also known as RAP55) belongs to a family of Sm-like
proteins that associate with RNA to form the core domain
of the ribonucleoprotein particles involved in a variety
of RNA processing events including pre-mRNA splicing,
telomere replication, and mRNA degradation. Members of
this family share a highly conserved Sm fold, containing
an N-terminal helix followed by a strongly bent
five-stranded antiparallel beta-sheet, that associates
with other Sm proteins to form hexameric and heptameric
ring structures. In addition to the N-terminal Sm-like
domain, LSm14 has an uncharacterized C-terminal domain
containing a conserved DFDF box. In Xenopus laevis,
LSm14 is an oocyte-specific constituent of
ribonucleoprotein particles.
Length = 74
Score = 26.0 bits (58), Expect = 5.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 187 IGGGMSLITAADIRYA-------TKDAWFTLKEV 213
IG +SLI+ +DIRY T+D+ LK V
Sbjct: 5 IGSKISLISKSDIRYEGILYTIDTEDSTIALKNV 38
>gnl|CDD|213709 TIGR02393, RpoD_Cterm, RNA polymerase sigma factor RpoD, C-terminal
domain. This model represents the well-conserved
C-terminal region of the major, essential sigma factor
of most bacteria. Members of this clade show
considerable variability in domain architecture and
molecular weight, as well as in nomenclature: RpoD in E.
coli and other Proteobacteria, SigA in Bacillus subtilis
and many other Gram-positive bacteria, HrdB in
Streptomyces, MysA in Mycobacterium smegmatis, etc
[Transcription, Transcription factors].
Length = 238
Score = 27.3 bits (61), Expect = 5.2
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 100 QEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVAR------K 153
+E + E ++L+E EE +V+ GL +L +E+ ++ +V R +
Sbjct: 167 REQLDEVLETLTEREE-KVL-------RMRYGLLDGQPHTL-EEVGKEFNVTRERIRQIE 217
Query: 154 SKILRKL 160
SK LRKL
Sbjct: 218 SKALRKL 224
>gnl|CDD|153086 cd01677, PFL2_DhaB_BssA, Pyruvate formate lyase 2 and related
enzymes. This family includes pyruvate formate lyase 2
(PFL2), B12-independent glycerol dehydratase (DhaB) and
the alpha subunit of benzylsuccinate synthase (BssA),
all of which have a highly conserved ten-stranded
alpha/beta barrel domain, which is similar to those of
PFL1 (pyruvate formate lyase 1) and RNR (ribonucleotide
reductase). Pyruvate formate lyase catalyzes a key step
in anaerobic glycolysis, the conversion of pyruvate and
CoenzymeA to formate and acetylCoA. DhaB catalyzes the
first step in the conversion of glycerol to
1,3-propanediol while BssA catalyzes the first step in
the anaerobic mineralization of both toluene and
m-xylene.
Length = 781
Score = 28.0 bits (63), Expect = 5.3
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 172 ERCPKPVISAVHGACIGGGMSLITAADIRYAT 203
E P P +SA+ CI G I A RY
Sbjct: 511 EVAPAPFLSALVDDCIEKGKD-INAGGARYNF 541
>gnl|CDD|165267 PHA02961, PHA02961, hypothetical protein; Provisional.
Length = 658
Score = 27.6 bits (61), Expect = 5.8
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 60 FDSLSENEECRVIILSAAGKI------FTAGLDLSGMLSLGQEIAEQEDIGECFDSLSEN 113
FD L E R+II + K+ F GLD++ +L+ EI E D+ + L
Sbjct: 23 FDLLHEKHAHRLIINNIFSKLPDKYYDFAKGLDINNILAFDHEIIELNDLKKLIMKLPHI 82
Query: 114 EECRVIVLSAAGK 126
+C +++ K
Sbjct: 83 PDCFTDIIACHKK 95
>gnl|CDD|148986 pfam07682, SOR, Sulphur oxygenase reductase. The sulphur
oxygenase/reductase (SOR) of the thermo-acidophilic
archaeon Acidianus ambivalens is an unusual enzyme
consisting of 24 identical subunits arranged in a
perfectly symmetrical hollow sphere and containing a
mononuclear non-heme iron centre (personal
communication: A. Kletzin). At 85 degrees C in vitro,
elemental sulphur is oxidized to sulphite, thiosulphate
and hydrogen sulphide with no external cofactors needed.
The proposed equation is: 4S + O2 + 4 H2O ---> 2 HSO3- +
2 H2S + 2 H+.
Length = 303
Score = 27.2 bits (60), Expect = 6.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 17 PKQFVVHVELNRPDKL 32
P Q++VHVE + D L
Sbjct: 244 PPQYIVHVEWSNLDAL 259
>gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase
component (subunits alpha and beta) [Lipid metabolism].
Length = 526
Score = 27.2 bits (61), Expect = 7.4
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 177 PVISAVHGACIGGG 190
P IS V G C GGG
Sbjct: 165 PQISVVMGPCAGGG 178
>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 401
Score = 27.3 bits (60), Expect = 7.6
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 42 PDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQE 101
P LNA+ M + + + + E+ +++ +G+ F AG D+ + L ++ +
Sbjct: 55 PPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHL-RKRGSPD 113
Query: 102 DIGECFDSL 110
I E F SL
Sbjct: 114 AIREFFSSL 122
>gnl|CDD|216992 pfam02358, Trehalose_PPase, Trehalose-phosphatase. This family
consist of trehalose-phosphatases EC:3.1.3.12 these
enzyme catalyze the de-phosphorylation of
trehalose-6-phosphate to trehalose and orthophosphate.
The aligned region is present in trehalose-phosphatases
and comprises the entire length of the protein it is
also found in the C-terminus of trehalose-6-phosphate
synthase EC:2.4.1.15 adjacent to the
trehalose-6-phosphate synthase domain - pfam00982. It
would appear that the two equivalent genes in the E.
coli otsBA operon otsA the trehalose-6-phosphate
synthase and otsB trehalose-phosphatase (this family)
have undergone gene fusion in most eukaryotes. Trehalose
is a common disaccharide of bacteria, fungi and
invertebrates that appears to play a major role in
desiccation tolerance.
Length = 235
Score = 26.9 bits (60), Expect = 7.8
Identities = 28/103 (27%), Positives = 34/103 (33%), Gaps = 30/103 (29%)
Query: 132 LDLSGMLSLGQEIAEQEDVARKSK----ILRKL-----ITTYQKSISSLE------RCPK 176
LD G LS I E D A S +L +L T S S P
Sbjct: 2 LDYDGTLS---PIVEDPDAAVPSDRLLSLLNRLASDPPNTVAIISGRSRAFEDLFFGVPN 58
Query: 177 PVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGKWK 219
++A HGA IR + W L EV+ WK
Sbjct: 59 LGLAAEHGAF------------IRDPGGEDWTNLAEVEDLDWK 89
>gnl|CDD|185746 cd08915, V_Alix_like, Protein-interacting V-domain of mammalian
Alix and related domains. This superfamily contains the
V-shaped (V) domain of mammalian Alix (apoptosis-linked
gene-2 interacting protein X), His-Domain type N23
protein tyrosine phosphatase (HD-PTP, also known as
PTPN23), Bro1 and Rim20 (also known as PalA) from
Saccharomyces cerevisiae, and related domains. Alix,
HD-PTP, Bro1, and Rim20 all interact with the ESCRT
(Endosomal Sorting Complexes Required for Transport)
system. Alix, also known as apoptosis-linked gene-2
interacting protein 1 (AIP1), participates in membrane
remodeling processes during the budding of enveloped
viruses, vesicle budding inside late endosomal
multivesicular bodies (MVBs), and the abscission
reactions of mammalian cell division. It also functions
in apoptosis. HD-PTP functions in cell migration and
endosomal trafficking, Bro1 in endosomal trafficking,
and Rim20 in the response to the external pH via the
Rim101 pathway. The Alix V-domain contains a binding
site, partially conserved in this superfamily, for the
retroviral late assembly (L) domain YPXnL motif. The
Alix V-domain is also a dimerization domain. Members of
this superfamily have an N-terminal Bro1-like domain,
which binds components of the ESCRT-III complex. The
Bro1-like domains of Alix and HD-PTP can also bind human
immunodeficiency virus type 1 (HIV-1) nucleocapsid. Many
members, including Alix, HD-PTP, and Bro1, also have a
proline-rich region (PRR), which binds multiple partners
in Alix, including Tsg101 (tumor susceptibility gene
101, a component of ESCRT-1) and the apoptotic protein
ALG-2. The C-terminal portion (V-domain and PRR) of Bro1
interacts with Doa4, a ubiquitin thiolesterase needed to
remove ubiquitin from MVB cargoes; it interacts with a
YPxL motif in Doa4s catalytic domain to stimulate its
deubiquitination activity. Rim20 may bind the ESCRT-III
subunit Snf7, bringing the protease Rim13 (a
YPxL-containing transcription factor) into proximity
with Rim101, and promoting the proteolytic activation of
Rim101. HD-PTP is encoded by the PTPN23 gene, a tumor
suppressor gene candidate often absent in human kidney,
breast, lung, and cervical tumors. HD-PTP has a
C-terminal catalytically inactive tyrosine phosphatase
domain.
Length = 342
Score = 26.9 bits (60), Expect = 8.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 144 IAEQEDVARKSKILRKLITTYQKS 167
I+E E +R + IL KLIT Y+K+
Sbjct: 213 ISELEIKSRNNDILPKLITEYKKN 236
>gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional.
Length = 550
Score = 27.3 bits (61), Expect = 8.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 179 ISAVHGACIGGGMSLITAAD 198
I+AV+G C GGG L A D
Sbjct: 127 IAAVNGTCAGGGYELALACD 146
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,972,636
Number of extensions: 1000376
Number of successful extensions: 1262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1162
Number of HSP's successfully gapped: 180
Length of query: 220
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 127
Effective length of database: 6,812,680
Effective search space: 865210360
Effective search space used: 865210360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.5 bits)