RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8151
(220 letters)
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 187 bits (478), Expect = 1e-59
Identities = 75/208 (36%), Positives = 110/208 (52%), Gaps = 61/208 (29%)
Query: 9 YKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEE 68
Y+++ V ++ V+HV+LNRP+K NAMN W E+ ECF +S++ +
Sbjct: 2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAF-------------WRELVECFQKISKDSD 48
Query: 69 CRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIF 128
CR +++S AGK+FT+G+DL M S +
Sbjct: 49 CRAVVVSGAGKMFTSGIDLMDMASDILQ-------------------------------- 76
Query: 129 TAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIG 188
+DVAR + LR LI+ YQK+ + +E+CPKPVI+A+HG CIG
Sbjct: 77 ----------------PPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIG 120
Query: 189 GGMSLITAADIRYATKDAWFTLKEVDIG 216
GG+ LI+A DIRY T+DA+F +KEVD+G
Sbjct: 121 GGVDLISACDIRYCTQDAFFQVKEVDVG 148
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 122 bits (309), Expect = 5e-34
Identities = 40/212 (18%), Positives = 70/212 (33%), Gaps = 43/212 (20%)
Query: 5 TPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLS 64
D KT+ V V + NRP+K NA+ L E+ +
Sbjct: 30 DFDNLKTMTYEV-TDRVARITFNRPEKGNAIVADTPL-------------ELSALVERAD 75
Query: 65 ENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAA 124
+ + VI++S G+ F AG DLS
Sbjct: 76 LDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGG------------------------- 110
Query: 125 GKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHG 184
+ + + + Q + D + ++++ + + +SL C KP + +HG
Sbjct: 111 ----GSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHG 166
Query: 185 ACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
C+ GG + AD A DA + +
Sbjct: 167 YCVAGGTDIALHADQVIAAADAKIGYPPMRVW 198
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 113 bits (284), Expect = 1e-30
Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 65/214 (30%)
Query: 3 SFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDS 62
+ P + ++V P+ + V LNRP+++NA M + L +
Sbjct: 16 TQGPGSMSFVLVDRPRPEIALVTLNRPERMNA-------------MAFDVMLPFKQMLVD 62
Query: 63 LSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLS 122
+S + + R ++++ AGK F +G D + +
Sbjct: 63 ISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPT------------------- 103
Query: 123 AAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 182
I + + + I +L R +PVI+A+
Sbjct: 104 ---------------------------------IALRSMELLDEVILTLRRMHQPVIAAI 130
Query: 183 HGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+GA IGGG+ L A D+R A++DA+F ++ G
Sbjct: 131 NGAAIGGGLCLALACDVRVASQDAYFRAAGINNG 164
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 108 bits (272), Expect = 5e-29
Identities = 30/214 (14%), Positives = 65/214 (30%), Gaps = 71/214 (33%)
Query: 3 SFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDS 62
T + +L + V+++ L+ P LN++ M ++ + +
Sbjct: 6 PLTYQDFPSLRFEPGEHGVLNLVLDSPG--------------LNSVGPQMHRDLADVWPV 51
Query: 63 LSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLS 122
+ + + RV+++ GK F
Sbjct: 52 IDRDPDVRVVLVRGEGKAF----------------------------------S------ 71
Query: 123 AAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 182
+G + + + + R+ + + +L KPV+SA+
Sbjct: 72 -------SGGSFELIDETIGDYEGRIRIMRE----------ARDLVLNLVNLDKPVVSAI 114
Query: 183 HGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
G +G G+ + ADI A+ A +G
Sbjct: 115 RGPAVGAGLVVALLADISVASATAKIIDGHTKLG 148
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 108 bits (271), Expect = 6e-29
Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 69/209 (33%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
Y+ +VV F + + + N++N + E+ +
Sbjct: 3 RYRDIVVRKQDGFTHILLSTKSSENNSLNPE-------------VMREVQSALST----- 44
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
A +D ++++LSA G +
Sbjct: 45 ------------------------------AAADDS-------------KLVLLSAVGSV 61
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
F GLD + + ++E K+ + +++ + KP+I AV+G I
Sbjct: 62 FCCGLDFIYFIRRLTDDRKRES--------TKMAEAIRNFVNTFIQFKKPIIVAVNGPAI 113
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
G G S++ D+ +A + AWF G
Sbjct: 114 GLGASILPLCDVVWANEKAWFQTPYTTFG 142
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 108 bits (273), Expect = 6e-29
Identities = 36/212 (16%), Positives = 58/212 (27%), Gaps = 64/212 (30%)
Query: 5 TPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLS 64
D ++ V + NR D+LNA + D
Sbjct: 24 AADAQDAVLYEATPGGVAIITFNRADRLNAWGPD-------------LAAGFYAAIDRAE 70
Query: 65 ENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAA 124
+ RVI+L+ G+ F AG L
Sbjct: 71 ADPGIRVIVLTGRGRGFCAGAYLGSA---------------------------------- 96
Query: 125 GKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHG 184
A + K+K ++ + KPVI+A++G
Sbjct: 97 -----------------DAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAING 139
Query: 185 ACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
C+G G++ D+R+A A F G
Sbjct: 140 PCVGIGLTQALMCDVRFAAAGAKFAAVFARRG 171
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 108 bits (272), Expect = 7e-29
Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 69/209 (33%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
TY+ +VV F V R + NA+N + EI +S
Sbjct: 21 TYRDIVVKKEDGFTQIVLSTRSTEKNALNTE-------------VIKEIVNALNS----- 62
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
A +D ++++ SAAG +
Sbjct: 63 ------------------------------AAADDS-------------KLVLFSAAGSV 79
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
F GLD + + +++ T + +++ + KP++ +V+G I
Sbjct: 80 FCCGLDFGYFVKHLRNNRNTAS--------LEMVDTIKNFVNTFIQFKKPIVVSVNGPAI 131
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
G G S++ D+ +A + AWF G
Sbjct: 132 GLGASILPLCDLVWANEKAWFQTPYTTFG 160
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 108 bits (271), Expect = 7e-29
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ + S + RV+VL+ G F AG DLS S G + + +++ + L
Sbjct: 41 SQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAAL 100
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ + PVI+A+ G GG L+ A DI A + F L E IG
Sbjct: 101 MRA-------IVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIG 149
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 108 bits (271), Expect = 7e-29
Identities = 27/209 (12%), Positives = 64/209 (30%), Gaps = 68/209 (32%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
+ + + + +++ L+ P+K N ++ + + E + +
Sbjct: 2 SLSYVHTEI-QNDALYITLDYPEKKNGLDAEL-------------GTSLLEAIRAGNNET 47
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
IIL + +
Sbjct: 48 SIHSIILQSKHR----------------------------------------------AY 61
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
F++G L +L + ++ LR+++ + + PK ++ ++G
Sbjct: 62 FSSGPRLEDLLICASDQSDVR--------LREVLHVLNHCVLEIFTSPKVTVALINGYAY 113
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
GGG +++ A D R A + A F +G
Sbjct: 114 GGGFNMMLACDRRIALRRAKFLENFHKMG 142
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 107 bits (270), Expect = 1e-28
Identities = 47/209 (22%), Positives = 70/209 (33%), Gaps = 70/209 (33%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
+ L+ + + V + +NR K NA ++ + E+ DS +
Sbjct: 2 SLSDLLYEI-QDKVGLLTMNRISKHNA-------------FDNQLLTEMRIRLDSAINDT 47
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
RVI+L A GK F+AG DL+ M S+ E+
Sbjct: 48 NVRVIVLKANGKHFSAGADLTWMQSMANFTEEE--------------------------- 80
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
ED ++ + + PKP I+ V GA
Sbjct: 81 ------------------NLEDSLVLGNLMYSI-----------SQSPKPTIAMVQGAAF 111
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
GGG L A DI A+ A F EV +G
Sbjct: 112 GGGAGLAAACDIAIASTSARFCFSEVKLG 140
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 106 bits (267), Expect = 2e-28
Identities = 37/209 (17%), Positives = 61/209 (29%), Gaps = 67/209 (32%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
+ L+ V + V+ + L R + ++ M + + ++
Sbjct: 4 SQDGLLGEVLSEGVLTLTLGRAPA--------------HPLSRAMIAALHDALRRAMGDD 49
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
V+++ G+IF AG DL + D G F
Sbjct: 50 HVHVLVIHGPGRIFCAGHDLKEI----GRHRADPDEGRAF-------------------- 85
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
+ L + L CPKP I+ V G
Sbjct: 86 -----------------------------VTDLFEACSALMLDLAHCPKPTIALVEGIAT 116
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
G+ L+ A D+ YA+ A F L V G
Sbjct: 117 AAGLQLMAACDLAYASPAARFCLPGVQNG 145
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 107 bits (268), Expect = 2e-28
Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 63/210 (30%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
+ + + + + L PD LNA+ ++ +GE + N
Sbjct: 7 QNEKISYRI-EGPFFIIHLINPDNLNALEGE-------------DYIYLGELLELADRNR 52
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
+ I+ ++G+ F++G D G+ + +
Sbjct: 53 DVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYP------------------------- 87
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
+ SK + + + + K +I ++G I
Sbjct: 88 -----------------------SETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAI 124
Query: 188 GGGMSLITAADIRYATKD-AWFTLKEVDIG 216
G +L+ DI Y+ D + ++G
Sbjct: 125 GLSAALVALCDIVYSINDKVYLLYPFANLG 154
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 106 bits (268), Expect = 2e-28
Identities = 40/209 (19%), Positives = 64/209 (30%), Gaps = 69/209 (33%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
++ L V + V V L RPDKLNA + + ++ + LS
Sbjct: 15 EWRHLRVEI-TDGVATVTLARPDKLNA-------------LTFEAYADLRDLLAELSRRR 60
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
R ++L+ G+ F C
Sbjct: 61 AVRALVLAGEGRGF----------------------------------C----------- 75
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
+G D+ ++ + L + + ++ CP PVI+A+HG
Sbjct: 76 --SGGDVDEIIGATLSMDTAR--------LLDFNRMTGQVVRAVRECPFPVIAALHGVAA 125
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
G G L AAD R A F +G
Sbjct: 126 GAGAVLALAADFRVADPSTRFAFLFTRVG 154
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 106 bits (267), Expect = 3e-28
Identities = 38/209 (18%), Positives = 62/209 (29%), Gaps = 72/209 (34%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
TY+T+ V + V ++ +RP+ N + N T+ E + +
Sbjct: 5 TYQTIKVRF-QASVCYITFHRPEANNTI-------------NDTLIEECLQVLNQC---- 46
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
E V+VL ++
Sbjct: 47 --------------------------------------------ETSTVTVVVLEGLPEV 62
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
F G D + + +Q L L L+ P IS V G
Sbjct: 63 FCFGADFQEIYQEMKRGRKQASSQEP---LYDLWMK-------LQTGPYVTISHVRGKVN 112
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
GG+ ++A DI A + A F+L E+ G
Sbjct: 113 AGGLGFVSATDIAIADQTASFSLSELLFG 141
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 105 bits (264), Expect = 9e-28
Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 70/209 (33%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
++TLVV + + + NRP K NA+N M+ EI + S+++
Sbjct: 24 GFETLVVTS-EDGITKIMFNRPKKKNAINTE-------------MYHEIMRALKAASKDD 69
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
+ VL+ G
Sbjct: 70 S------------------------------------------------IITVLTGNGDY 81
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
+++G DL+ + E++ + ++ + PKP+I+ V+G +
Sbjct: 82 YSSGNDLTNFTDIPPGGVEEK--------AKNNAVLLREFVGCFIDFPKPLIAVVNGPAV 133
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
G ++L+ D YA+ A F +G
Sbjct: 134 GISVTLLGLFDAVYASDRATFHTPFSHLG 162
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 102 bits (256), Expect = 9e-27
Identities = 32/208 (15%), Positives = 63/208 (30%), Gaps = 74/208 (35%)
Query: 9 YKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEE 68
L + + L+RP+K NA++ + + + D+
Sbjct: 6 SLPLAIER-RPAAWTFTLSRPEKRNALSAE-------------LVEALIDGVDAA----- 46
Query: 69 CRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIF 128
E+ ++V + AG+ F
Sbjct: 47 -------------------------------------------HREQVPLLVFAGAGRNF 63
Query: 129 TAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIG 188
+AG D + + +E + + R +I + + + P ++ HG G
Sbjct: 64 SAGFDFTDY----ETQSEGDLLLRMVRI--------EMLLQRVAGSPSLTLALAHGRNFG 111
Query: 189 GGMSLITAADIRYATKDAWFTLKEVDIG 216
G+ L A RY T +A F + + G
Sbjct: 112 AGVDLFAACKWRYCTPEAGFRMPGLKFG 139
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 102 bits (256), Expect = 1e-26
Identities = 34/216 (15%), Positives = 58/216 (26%), Gaps = 72/216 (33%)
Query: 1 MASFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECF 60
+AS Y L P+ V+ + +KLNAM + + +
Sbjct: 2 LASLEAR-YPGLAFAWPRPGVLEITFR--------------GEKLNAMPPALHRGLARVW 46
Query: 61 DSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIV 120
L E R ++L G +F
Sbjct: 47 RDLEAVEGVRAVLLRGEGGVF----------------------------------S---- 68
Query: 121 LSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 180
AG + + V + + + P+PV++
Sbjct: 69 ---------AGGSFGLIEEMRASHEALLRVFWE----------ARDLVLGPLNFPRPVVA 109
Query: 181 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
AV +G G++L AADI K + +G
Sbjct: 110 AVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLG 145
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 101 bits (255), Expect = 1e-26
Identities = 43/211 (20%), Positives = 70/211 (33%), Gaps = 79/211 (37%)
Query: 6 PDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSE 65
P + + V V+ + L+RP+KLNA ++ M E+
Sbjct: 2 PGSMNGISVEH-DGAVLRIRLDRPEKLNA-------------VDTPMLEELSVHIRDAEA 47
Query: 66 NEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAG 125
+E R ++L+ AG+ F C
Sbjct: 48 DESVRAVLLTGAGRAF----------------------------------C--------- 64
Query: 126 KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGA 185
+G DL+G + G + + ++ PKPVI+ VHGA
Sbjct: 65 ----SGGDLTGGDTAG------------------AADAANRVVRAITSLPKPVIAGVHGA 102
Query: 186 CIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+G G SL A D+ A ++F L +G
Sbjct: 103 AVGFGCSLALACDLVVAAPASYFQLAFTRVG 133
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 101 bits (254), Expect = 2e-26
Identities = 40/209 (19%), Positives = 68/209 (32%), Gaps = 71/209 (33%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
+ L ++ + V+ + +NRP+ N A+ ++L I + D +N+
Sbjct: 3 LHPHLNANL-EGGVLTLAINRPEAKN-------------ALYGELYLWIAKALDEADQNK 48
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
+ RV+ VL A
Sbjct: 49 DVRVV-----------------------------------------------VLRGAEHD 61
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
FTAG D+ + Q + S R KP+I AV G I
Sbjct: 62 FTAGNDMKDFMGFVQNPNAGPAGQVP----------PFVLLKSAARLSKPLIIAVKGVAI 111
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
G G++++ AD+ +A A F + V +G
Sbjct: 112 GIGVTILLQADLVFADNTALFQIPFVSLG 140
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 101 bits (254), Expect = 2e-26
Identities = 30/211 (14%), Positives = 62/211 (29%), Gaps = 73/211 (34%)
Query: 7 DTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSEN 66
Y+ L H + ++ V ++ E + F +S +
Sbjct: 20 TKYENLHFHRDENGILEVRMHTNGSSLV-------------FTGKTHREFPDAFYDISRD 66
Query: 67 EECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGK 126
+ RV+IL+ +G + A +D +
Sbjct: 67 RDNRVVILTGSGDAWMAEIDFPSL------------------------------------ 90
Query: 127 IFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGAC 186
++ + + +K++ +L PVISAV+GA
Sbjct: 91 ---------------GDVTNPREWDKTYWEGKKVLQ-------NLLDIEVPVISAVNGAA 128
Query: 187 IGGGMSLITAADIRYATKDAWFT-LKEVDIG 216
+ I DI A+++ F + ++ G
Sbjct: 129 LLHS-EYILTTDIILASENTVFQDMPHLNAG 158
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 101 bits (253), Expect = 2e-26
Identities = 41/196 (20%), Positives = 62/196 (31%), Gaps = 73/196 (37%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V+ + LNRP+KLNA + + + E+ E R ++L+ AG+
Sbjct: 10 VLVLTLNRPEKLNA-------------ITGELLDALYAALKEGEEDREVRALLLTGAGRA 56
Query: 81 FTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSL 140
F AG DL+
Sbjct: 57 F----------------------------------S-------------AGQDLTEF--- 66
Query: 141 GQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIR 200
+ + Y + + +L KP++ AV+G G GMSL D+R
Sbjct: 67 ----------GDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLR 116
Query: 201 YATKDAWFTLKEVDIG 216
A A FT V IG
Sbjct: 117 LAAVGASFTTAFVRIG 132
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 98.8 bits (247), Expect = 2e-25
Identities = 29/208 (13%), Positives = 60/208 (28%), Gaps = 68/208 (32%)
Query: 9 YKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEE 68
Y+ + V V + + P NA ++ E+ + + E++
Sbjct: 2 YEAIGHRVEDG-VAEITIKLPRHRNA-------------LSVKAMQEVTDALNRAEEDDS 47
Query: 69 CRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIF 128
++++ A F AG L + + + F +
Sbjct: 48 VGAVMITGAEDAFCAGFYLREI----PLDKGVAGVRDHFRIAALW--------------- 88
Query: 129 TAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIG 188
+ + I + R +PV++A++G G
Sbjct: 89 -----------------------------------WHQMIHKIIRVKRPVLAAINGVAAG 113
Query: 189 GGMSLITAADIRYATKDAWFTLKEVDIG 216
GG+ + A+D+ A F IG
Sbjct: 114 GGLGISLASDMAICADSAKFVCAWHTIG 141
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 98.4 bits (246), Expect = 3e-25
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
++ + + R +V++ AG+ F AG DLSG+ + L
Sbjct: 33 AEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGV-------------TEEMDHGDVL 79
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ Y + +L KPV++AV+GA G GMSL A D R ++ A F + +G
Sbjct: 80 RSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVG 135
Score = 65.6 bits (161), Expect = 4e-13
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 27/132 (20%)
Query: 9 YKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEE 68
Y+T+ V K V + LNRPD+LNA M E+ + +
Sbjct: 2 YETIRYEV-KGQVAWLTLNRPDQLNA-------------FTEQMNAEVTKALKQAGADPN 47
Query: 69 CRVIILSAAGKIFTAGLDLSGMLS-LGQEIAEQEDIGECFDSLSENEECRVIVLS----- 122
R ++++ AG+ F AG DLSG+ + + +L V++
Sbjct: 48 VRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKAL---HHLEKPVVAAVNGA 104
Query: 123 AAGKIFTAGLDL 134
AAG AG+ L
Sbjct: 105 AAG----AGMSL 112
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 98.1 bits (245), Expect = 5e-25
Identities = 42/209 (20%), Positives = 65/209 (31%), Gaps = 68/209 (32%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
T + V + + LNRP+ NA N + E+ + +E+
Sbjct: 18 TEMYIDYDV-SDRIATITLNRPEAANAQ-------------NPELLDELDAAWTRAAEDN 63
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
+ VI+L A GK F+AG DL G
Sbjct: 64 DVSVIVLRANGKHFSAGHDLRGG------------------------------------- 86
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
+ ++ + + Y PKP I+AV G CI
Sbjct: 87 --------------GPVPDKLTLEFIYAHESRRYLEYSLRW---RNVPKPSIAAVQGRCI 129
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
GG+ L D+ A +DA F+ V +
Sbjct: 130 SGGLLLCWPCDLIIAAEDALFSDPVVLMD 158
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 96.8 bits (242), Expect = 8e-25
Identities = 36/209 (17%), Positives = 69/209 (33%), Gaps = 72/209 (34%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
+ TL + V + LNRP+ LN A N ++ + +++
Sbjct: 4 SMVTLQIDD-DNRVRTLTLNRPEALN-------------AFNEALYDATAQALLDAADDP 49
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
+ V+ +L+ +G+
Sbjct: 50 QVAVV-----------------------------------------------LLTGSGRG 62
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
F+AG DL+ M + + E ++ I +L PKP+I AV+G +
Sbjct: 63 FSAGTDLAEMQARITDPNFSEG-----------KFGFRGLIKALAGFPKPLICAVNGLGV 111
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
G G +++ AD+ + + A +G
Sbjct: 112 GIGATILGYADLAFMSSTARLKCPFTSLG 140
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 97.3 bits (243), Expect = 1e-24
Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 71/215 (33%)
Query: 2 ASFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFD 61
S D + V + + LNRPD LN ++N + + + +
Sbjct: 20 GSMVYDMPTEIDVRA-DGALRIITLNRPDSLN-------------SVNDDLHVGLARLWQ 65
Query: 62 SLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVL 121
L+++ R V+
Sbjct: 66 RLTDDPTARAA-----------------------------------------------VI 78
Query: 122 SAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 181
+ AG+ F+AG D + L + + R ++ + + RC PV++A
Sbjct: 79 TGAGRAFSAGGDFGYLKELSADADLRAKTIRD----------GREIVLGMARCRIPVVAA 128
Query: 182 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
V+G +G G SL+ +DI Y ++A+ V +G
Sbjct: 129 VNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVG 163
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 96.1 bits (240), Expect = 1e-24
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
E + CF +++N++ +V++L+ G F++G ++ + E D++
Sbjct: 33 EGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGEVEVLDLSGL------- 85
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ C P+I+A+ G GGG+ L AD ++++ + + G
Sbjct: 86 ----------ILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYG 131
Score = 64.1 bits (157), Expect = 9e-13
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 13/83 (15%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
VV + + N + ++ + CF +++N++ +V+IL+ G
Sbjct: 13 VVQITMKDESSRNG-------------FSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNY 59
Query: 81 FTAGLDLSGMLSLGQEIAEQEDI 103
F++G ++ + E D+
Sbjct: 60 FSSGASKEFLIRKTRGEVEVLDL 82
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 96.5 bits (241), Expect = 2e-24
Identities = 46/214 (21%), Positives = 77/214 (35%), Gaps = 68/214 (31%)
Query: 3 SFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDS 62
S +KT+ V + + + V LNRP+K NAM + T+ E+ + ++
Sbjct: 2 STYEGRWKTVKVEI-EDGIAFVILNRPEKRNAM-------------SPTLNREMIDVLET 47
Query: 63 LSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLS 122
L ++ V++L+ AG+ +TAG+DL
Sbjct: 48 LEQDPAAGVLVLTGAGEAWTAGMDLKEY-------------------------------- 75
Query: 123 AAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 182
+ + KI R+ K + KP I+ V
Sbjct: 76 -------------------FREVDAGPEILQEKIRREASQWQWKLL---RMYAKPTIAMV 113
Query: 183 HGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+G C GGG S + A D+ +A F L E++ G
Sbjct: 114 NGWCFGGGFSPLVACDLAICADEATFGLSEINWG 147
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 95.7 bits (239), Expect = 3e-24
Identities = 39/216 (18%), Positives = 65/216 (30%), Gaps = 79/216 (36%)
Query: 1 MASFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECF 60
+ + T + + + V+ +EL RP++ NA+ N + E+ +
Sbjct: 12 LEAQTQGPGSMIGITQ-AEAVLTIELQRPERRNAL-------------NSQLVEELTQAI 57
Query: 61 DSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIV 120
+ R IV
Sbjct: 58 RKA------------------------------------------------GDGSARAIV 69
Query: 121 LSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 180
L+ G F AG DLSG A D + + +++ P PV+
Sbjct: 70 LTGQGTAFCAGADLSGD-------AFAADYPDR----------LIELHKAMDASPMPVVG 112
Query: 181 AVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
A++G IG G+ L D+R DA+F G
Sbjct: 113 AINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYG 148
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 95.7 bits (239), Expect = 3e-24
Identities = 40/215 (18%), Positives = 67/215 (31%), Gaps = 66/215 (30%)
Query: 2 ASFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFD 61
S D++ T+ V + LNRPD LNA+ + M E+ +
Sbjct: 3 GSMPVDSFDTIKYEV-DGHTATITLNRPDALNAL-------------SPHMITELRAAYH 48
Query: 62 SLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVL 121
++ +++++ G+ F +G D+ + G+
Sbjct: 49 EAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKV------------------------- 83
Query: 122 SAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 181
R Q+ KPV++A
Sbjct: 84 ---------------------------IYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTA 116
Query: 182 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
V+G C G GM +T DI A++ A F V IG
Sbjct: 117 VNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIG 151
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 95.3 bits (238), Expect = 4e-24
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ + D L + R +VL+ GK F+AG DL+ + + + AE+ +
Sbjct: 29 LSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEEN---------YRH 79
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ + + PKP ++AV+G + GG L A D+ ++A EV IG
Sbjct: 80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIG 135
Score = 62.9 bits (154), Expect = 3e-12
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 15/113 (13%)
Query: 13 VVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVI 72
+V V K V V LN P++ N ++ M L + + D L + R +
Sbjct: 1 MVQVEKGHVAVVFLNDPERRNP-------------LSPEMALSLLQALDDLEADPGVRAV 47
Query: 73 ILSAAGKIFTAGLDLSGMLSLGQEIAEQ--EDIGECFDSLSENEECRVIVLSA 123
+L+ GK F+AG DL+ + + + AE+ ++A
Sbjct: 48 VLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAA 100
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 95.8 bits (239), Expect = 4e-24
Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 71/215 (33%)
Query: 2 ASFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFD 61
+ L+ ++ VV + LNRP NA++ M
Sbjct: 17 QGPGSMSEPLLLQDRDERGVVTLTLNRPQAF-------------NALSEAM--------- 54
Query: 62 SLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVL 121
+A +GE F +L+E+E R +VL
Sbjct: 55 -----------------------------------LAA---LGEAFGTLAEDESVRAVVL 76
Query: 122 SAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISA 181
+A+GK F AG DL M + ++ AR + ++ + +R P PVI+
Sbjct: 77 AASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAI-----------QRLPAPVIAR 125
Query: 182 VHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
VHG G L+ D+ AT+DA F + +++G
Sbjct: 126 VHGIATAAGCQLVAMCDLAVATRDARFAVSGINVG 160
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 96.1 bits (239), Expect = 2e-23
Identities = 36/213 (16%), Positives = 65/213 (30%), Gaps = 56/213 (26%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
+ + + + V + + R D+LNA + ++ D +
Sbjct: 165 EMEAVHLER-RDGVARLTMCRDDRLNAEDGQQVD-------------DMETAVDLALLDP 210
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
RV +L ++
Sbjct: 211 GVRVGLLRGGVMSHPRY--------------------------------------RGKRV 232
Query: 128 FTAGLDLSGM----LSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVH 183
F+AG++L + +SL + +E + L + R KP ++AV
Sbjct: 233 FSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVD 292
Query: 184 GACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
G IGGG L+ D A+ DA+F+L G
Sbjct: 293 GFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEG 325
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 94.5 bits (235), Expect = 3e-23
Identities = 40/212 (18%), Positives = 61/212 (28%), Gaps = 56/212 (26%)
Query: 7 DTYKTLVVHV-PKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSE 65
D + H V V NRP+ NA E+ D
Sbjct: 52 DDLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVD-------------ELYRVLDHARM 98
Query: 66 NEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAG 125
+ + V++L+ G G G
Sbjct: 99 SPDVGVVLLTGNGPSPKDG----------------------------------------G 118
Query: 126 KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGA 185
F +G D G + A + A + R + + PK VI V+G
Sbjct: 119 WAFCSGGDQRIRGRSGYQYASGDT-ADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGW 177
Query: 186 CIGGGMSLITAADIRYATKD-AWFTLKEVDIG 216
GGG SL D+ A+++ A F + D+G
Sbjct: 178 AAGGGHSLHVVCDLTLASREYARFKQTDADVG 209
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 91.9 bits (229), Expect = 4e-23
Identities = 33/196 (16%), Positives = 58/196 (29%), Gaps = 74/196 (37%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
+ + ++ K+N + TM + E D+ + + ++++ ++
Sbjct: 15 IGVIRMDDG--------------KVNVLGPTMQQALNEAIDAA-DRDNVGALVIAGNHRV 59
Query: 81 FTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSL 140
F+ G DL + S + A ML
Sbjct: 60 FSGGFDLKVLTSGEAKPAID------------------------------------MLRG 83
Query: 141 GQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIR 200
G E++ + L PKPV+ A G I G L+ + D R
Sbjct: 84 GFELSYR-----------------------LLSYPKPVVIACTGHAIAMGAFLLCSGDHR 120
Query: 201 YATKDAWFTLKEVDIG 216
A EV IG
Sbjct: 121 VAAHAYNVQANEVAIG 136
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 91.8 bits (229), Expect = 9e-23
Identities = 41/209 (19%), Positives = 71/209 (33%), Gaps = 71/209 (33%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
+ + V VV + LNR + N++ + + E+ ++E
Sbjct: 6 QLQNISVDYATPHVVKISLNRERQANSL-------------SLALLEELQNILTQINEEA 52
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
RV+IL+ AG+ K
Sbjct: 53 NTRVVILTGAGE----------------------------------------------KA 66
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
F AG DL + +E R ++ + ++ +E+ P+PVI+A++G +
Sbjct: 67 FCAGADLKERAGMNEEQV------------RHAVSMIRTTMEMVEQLPQPVIAAINGIAL 114
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
GGG L A D R A + A L E +
Sbjct: 115 GGGTELSLACDFRIAAESASLGLTETTLA 143
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 91.5 bits (228), Expect = 1e-22
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+G + L ++ RVIVL+ A F +G +S A R
Sbjct: 37 RQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAA-------------AETFAAPRNP 83
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ + PVI+AV+G IG GM+L ADIR ++ + + +V G
Sbjct: 84 DFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFG 139
Score = 61.4 bits (150), Expect = 1e-11
Identities = 12/63 (19%), Positives = 24/63 (38%)
Query: 42 PDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQE 101
P N+ + ++G + L ++ RVI+L+ A F +G +S +
Sbjct: 25 PSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPD 84
Query: 102 DIG 104
Sbjct: 85 FSA 87
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 91.5 bits (228), Expect = 2e-22
Identities = 36/215 (16%), Positives = 65/215 (30%), Gaps = 69/215 (32%)
Query: 3 SFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDS 62
S D Y TL V + V + L+ P +N + TM E+ +
Sbjct: 2 SLRNDAYSTLRVSS-EHGVARIILDNP--------------PVNVIGATMMRELRTVLTT 46
Query: 63 LSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLS 122
L+++ RVI+ S+A
Sbjct: 47 LADDSSVRVIVFSSADP------------------------------------------- 63
Query: 123 AAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 182
+ F A +D+ + + + + + +Q + P+ I +
Sbjct: 64 ---EFFLAHVDMR-------IGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKL 113
Query: 183 HGACIGGGMSLITAADIRYATKD-AWFTLKEVDIG 216
G GGG + AAD+ +A + A E +G
Sbjct: 114 AGKARGGGAEFVAAADMAFAAAETAGLGQIEALMG 148
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 90.4 bits (225), Expect = 3e-22
Identities = 31/211 (14%), Positives = 57/211 (27%), Gaps = 75/211 (35%)
Query: 7 DTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSEN 66
Y+ + + V+ V ++ K T E+ CF ++ +
Sbjct: 13 QKYENIRLER-DGGVLLVTVHTEGKSL-------------VWTSTAHDELAYCFHDIACD 58
Query: 67 EECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGK 126
E +V+IL+ G F C
Sbjct: 59 RENKVVILTGTGPSF----------------------------------C---------- 74
Query: 127 IFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGAC 186
+D + ++I Q+ +++L PVI+AV+G
Sbjct: 75 ---NEIDFTSFNLGTPHDW------------DEIIFEGQRLLNNLLSIEVPVIAAVNGPV 119
Query: 187 IGGGMSLITAADIRYATKDAWF-TLKEVDIG 216
+ +DI A + A F G
Sbjct: 120 -TNAPEIPVMSDIVLAAESATFQDGPHFPSG 149
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 88.7 bits (221), Expect = 1e-21
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
E++ + + R VL G +FTAGLDL+ + + Q A +
Sbjct: 39 EELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDG 98
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ KP++ AVHG + G+ L AADI A + A F EV+ G
Sbjct: 99 -----------RQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRG 143
Score = 64.9 bits (159), Expect = 7e-13
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 9 YKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEE 68
Y+TL + +V+ + LNRP K NA + TM E+ + +
Sbjct: 8 YETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLE-------------ELALALGEYETDTD 53
Query: 69 CRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQ 100
R +L G +FTAGLDL+ + + Q A
Sbjct: 54 LRAAVLYGEGPLFTAGLDLASVAAEIQGGASL 85
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 88.0 bits (219), Expect = 3e-21
Identities = 35/212 (16%), Positives = 64/212 (30%), Gaps = 71/212 (33%)
Query: 5 TPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLS 64
T D + + + +V + +NR N++ + + + + D+L
Sbjct: 6 TEDELRVRHLEEENRGIVVLGINRAYGKNSL-------------SKNLIKMLSKAVDALK 52
Query: 65 ENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAA 124
+++ R II+ +
Sbjct: 53 SDKKVRTIIIRSEVP--------------------------------------------- 67
Query: 125 GKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHG 184
IF AG DL + ++ + I+ + P P I+A+ G
Sbjct: 68 -GIFCAGADLKERAKMSSSEV------------GPFVSKIRAVINDIANLPVPTIAAIDG 114
Query: 185 ACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+GGG+ L A DIR A A L E +
Sbjct: 115 LALGGGLELALACDIRVAASSAKMGLVETKLA 146
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 88.0 bits (219), Expect = 3e-21
Identities = 47/212 (22%), Positives = 69/212 (32%), Gaps = 75/212 (35%)
Query: 5 TPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLS 64
T TLVV V+ + LNRP K NA+ N + + +C +
Sbjct: 11 TIADPSTLVVDT-VGPVLTIGLNRPKKRNAL-------------NDGLMAALKDCLTDI- 55
Query: 65 ENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAA 124
++ R +V+
Sbjct: 56 ------------------------------------------------PDQIRAVVIHGI 67
Query: 125 GKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHG 184
G F+AGLDLS + T+ + ++ C PVI+A+ G
Sbjct: 68 GDHFSAGLDLSELRERDATEG------------LVHSQTWHRVFDKIQYCRVPVIAALKG 115
Query: 185 ACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
A IGGG+ L AA IR A A++ L E G
Sbjct: 116 AVIGGGLELACAAHIRVAEASAYYALPEGSRG 147
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET:
CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Length = 260
Score = 87.6 bits (218), Expect = 4e-21
Identities = 30/211 (14%), Positives = 59/211 (27%), Gaps = 75/211 (35%)
Query: 9 YKTLVVHV-PKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
+ ++V V ++ P +N+++ E+ + L ++
Sbjct: 2 SQRVLVEPDAGAGVAVMKFKNP--------------PVNSLSLEFLTELVISLEKLENDK 47
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
R +IL++ +
Sbjct: 48 SFRGVILTSDRP----------------------------------------------GV 61
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
F+AGLDL+ M Q+ L + ++SA++GAC
Sbjct: 62 FSAGLDLTEMCGRSPAHY------------AGYWKAVQELWLRLYQSNLVLVSAINGACP 109
Query: 188 GGGMSLITAADIRYATKDAWFT--LKEVDIG 216
GG + D R + + L E +G
Sbjct: 110 AGGCLVALTCDYRILADNPRYCIGLNETQLG 140
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 87.7 bits (218), Expect = 4e-21
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ + +++ + +VI++SA G +F++G DL + E SK++ +
Sbjct: 63 KSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHI 122
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
P PVI+ V+G G L+ + DI A+ + F V++G
Sbjct: 123 -----------RNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVG 167
Score = 70.4 bits (173), Expect = 8e-15
Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 13/131 (9%)
Query: 1 MASFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECF 60
M + ++ + ++ L+ P K N ++ M + +
Sbjct: 23 MGAGRRESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAM--------LK-----SLQSDI 69
Query: 61 DSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIV 120
+++ + +VII+SA G +F++G DL + E C + V V
Sbjct: 70 LHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPV 129
Query: 121 LSAAGKIFTAG 131
++ + TA
Sbjct: 130 IAMVNGLATAA 140
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 87.2 bits (217), Expect = 5e-21
Identities = 45/209 (21%), Positives = 78/209 (37%), Gaps = 73/209 (34%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
K L V V + + LN NAM+ + ++ E D + +++
Sbjct: 4 MLKFLSVRV-EDHIAVATLNHA--------------PANAMSSQVMHDVTELIDQVEKDD 48
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
RV+++ G+ F+AG D I E F S++E ++
Sbjct: 49 NIRVVVIHGEGRFFSAGAD----------IKE-------FTSVTEAKQ------------ 79
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
+L Q + +E+C KPVI+A+HGA +
Sbjct: 80 -----------------------------ATELAQLGQVTFERVEKCSKPVIAAIHGAAL 110
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
GGG+ + +R+AT+ A L E+ +G
Sbjct: 111 GGGLEFAMSCHMRFATESAKLGLPELTLG 139
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 86.9 bits (216), Expect = 1e-20
Identities = 37/211 (17%), Positives = 61/211 (28%), Gaps = 69/211 (32%)
Query: 6 PDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSE 65
+ ++ + + + +NRP NA T+ E+ +
Sbjct: 23 SEGFEDIRYEKSTDGIAKITINRPQVRNAFR------------PLTVK-EMIQALADARY 69
Query: 66 NEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAG 125
++ VIIL+ AG
Sbjct: 70 DDNIGVIILTGAGD---------------------------------------------- 83
Query: 126 KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGA 185
K F +G D G + + + +Q+ I CPKPV++ V G
Sbjct: 84 KAFCSGGDQKVRGDYGGYKDDSG-------VHHLNVLDFQRQI---RTCPKPVVAMVAGY 133
Query: 186 CIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
IGGG L D+ A +A F +G
Sbjct: 134 SIGGGHVLHMMCDLTIAADNAIFGQTGPKVG 164
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 86.5 bits (215), Expect = 1e-20
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ + E +D + + + R +L+ AG F AG+DL + ++
Sbjct: 50 QIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKDG---------SY 100
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ ++ R KP+I+AV G I GG ++ DIR A + A F + E
Sbjct: 101 DPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWS 156
Score = 62.6 bits (153), Expect = 4e-12
Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 21/127 (16%)
Query: 2 ASFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFD 61
++ +V + + V +NRP + NA++ M + E +D
Sbjct: 12 TPANGESGPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQ-------------IMVEAWD 57
Query: 62 SLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQED--IGECFDSLSENEECR-- 117
+ + + R IL+ AG F AG+DL + ++ D+L + +
Sbjct: 58 RVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKP 117
Query: 118 VIVLSAA 124
+I AA
Sbjct: 118 LI---AA 121
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 85.7 bits (213), Expect = 1e-20
Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 70/196 (35%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V + L+ P+K N + T+ + + + ++ R +++
Sbjct: 10 VRVITLDHPNKHNPF-------------SRTLETSVKDALARANADDSVRAVVVYGGA-- 54
Query: 81 FTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSL 140
+ F+AG D + + L
Sbjct: 55 --------------------------------------------ERSFSAGGDFNEVKQL 70
Query: 141 GQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIR 200
+S+ + + I ++ KP I+AV G IG G D R
Sbjct: 71 S-----------RSEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQR 119
Query: 201 YATKDAWFTLKEVDIG 216
A F + E+ G
Sbjct: 120 LMASTANFVMPELKHG 135
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 86.1 bits (214), Expect = 2e-20
Identities = 30/210 (14%), Positives = 59/210 (28%), Gaps = 71/210 (33%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
+Y+T+ + V+ N P +N + + ++ + L+
Sbjct: 6 SYETIKARL-DGTVLSATFNAP--------------PMNLIGPEVVRDLVALLEELAHPT 50
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
RV+I +A
Sbjct: 51 APRVVIFDSAD----------------------------------------------ADF 64
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
F +D++ + E A+ + L + P I+ + G
Sbjct: 65 FFPHVDMTKVPEYTAEAAKAGG---------PGDASLGMLFRKLSQLPAVTIAKLRGRAR 115
Query: 188 GGGMSLITAADIRYATKD-AWFTLKEVDIG 216
G G + A D+R+A+++ A EV IG
Sbjct: 116 GAGSEFLLACDMRFASRENAILGQPEVGIG 145
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 85.6 bits (213), Expect = 2e-20
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+D + ++ R +L+ AG + G DLS + A D A
Sbjct: 39 SQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPAT-------- 90
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
K + KP+I+AV+GAC+GGG ++ DIR + + A F L EV G
Sbjct: 91 ---IGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRG 143
Score = 65.6 bits (161), Expect = 4e-13
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 19/119 (15%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
+ L+V VV + +NRP + NA ++ M + +D + ++
Sbjct: 7 AARELLVER-DGPVVILTMNRPHRRNA-------------LSTNMVSQFAAAWDEIDHDD 52
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECR--VIVLSAA 124
R IL+ AG + G DLS + A D L + +I AA
Sbjct: 53 GIRAAILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLI---AA 108
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 85.3 bits (212), Expect = 3e-20
Identities = 42/209 (20%), Positives = 68/209 (32%), Gaps = 74/209 (35%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
TY T+ P V + L+RPD L NA+N T+ E+ + +
Sbjct: 7 TYTTIATSRPVAGVGLIRLDRPDAL-------------NALNQTLEAEVLDAARDFDADL 53
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
E I V++ + +
Sbjct: 54 EIGAI-----------------------------------------------VVTGSERA 66
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
F AG D++ M++L A + + SL + KP+++AV G +
Sbjct: 67 FAAGADIAEMVTLTPHQARERN--------------LLSGWDSLTQVRKPIVAAVAGYAL 112
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
GGG L D+ A A F E+ +G
Sbjct: 113 GGGCELAMLCDLVIAADTARFGQPEITLG 141
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
PSI-2, protein structure initiative; 2.50A {Pseudomonas
syringae PV}
Length = 232
Score = 84.2 bits (209), Expect = 3e-20
Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 77/197 (39%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V + LN K+NA++ + + D ++ ++I++ I
Sbjct: 16 VATLTLNNG--------------KVNAISPDVIIAFNAALDQAEKDR--AIVIVTGQPGI 59
Query: 81 FTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSL 140
+ G DL M S + +++
Sbjct: 60 LSGGYDLKVMTSSAEAAIN-------------------------------------LVAQ 82
Query: 141 GQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIR 200
G +A + + P P+I A G + G L+ +AD R
Sbjct: 83 GSTLARR-----------------------MLSHPFPIIVACPGHAVAKGAFLLLSADYR 119
Query: 201 YATKD-AWFTLKEVDIG 216
L EV IG
Sbjct: 120 IGVAGPFSIGLNEVQIG 136
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 84.2 bits (209), Expect = 6e-20
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 11/116 (9%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
D+ +EE R VL A G+ FTAGLDL + A +
Sbjct: 42 ADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPK--LAASGFRYPDGGVDPWGV 99
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ R KP++ AV G C G+ L+ ADI A + F EV G
Sbjct: 100 VQP---------RRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRG 146
Score = 61.0 bits (149), Expect = 1e-11
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 5 TPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLS 64
+ + + + L+R K NA + M ++
Sbjct: 7 ANSGPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLA-------------DLALAMGEYE 52
Query: 65 ENEECRVIILSAAGKIFTAGLDLSGM 90
+EE R +L A G+ FTAGLDL +
Sbjct: 53 RSEESRCAVLFAHGEHFTAGLDLMEL 78
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 84.1 bits (209), Expect = 6e-20
Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 77/211 (36%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
+Y+ + V V +E N KLNA+ + ++ + L
Sbjct: 2 SYQYVNVVT-INKVAVIEFNYGRKLNAL-------------SKVFIDDLMQALSDL---- 43
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVL--SAAG 125
E R I+L +
Sbjct: 44 --------------------------------------------NRPEIRCIILRAPSGS 59
Query: 126 KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGA 185
K+F+AG D+ + S G++ +D ++ +++ PKP+IS V G+
Sbjct: 60 KVFSAGHDIHELPSGGRDPLSYDD-------------PLRQITRMIQKFPKPIISMVEGS 106
Query: 186 CIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
GG +I ++D+ A + F++ V++G
Sbjct: 107 VWGGAFEMIMSSDLIIAASTSTFSMTPVNLG 137
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 83.0 bits (206), Expect = 1e-19
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 21/116 (18%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+++ V++++ A +F AGLDL + + E D++ K
Sbjct: 39 STFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKEL----GDTTELPDISPK------- 87
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
KPVI A++GA + GG+ L DI A+++A F +G
Sbjct: 88 ----------WPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVG 133
Score = 60.7 bits (148), Expect = 2e-11
Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 25/128 (19%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
L+V V + LNRP NA ++ + ++
Sbjct: 7 DSPVLLVDT-TDRVRTLTLNRPQSRNA-------------LSAELRSTFFRALSDAQNDD 52
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSA-AGK 126
+ V+I++ A +F AGLDL + + ++ + + V+ A G
Sbjct: 53 DVDVVIVTGADPVFCAGLDLKEL-------GDTTELPDISPKW---PDMTKPVIGAINGA 102
Query: 127 IFTAGLDL 134
T GL+L
Sbjct: 103 AVTGGLEL 110
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 83.4 bits (207), Expect = 1e-19
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 100 QEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRK 159
+I D L ++ +VL +IF+AG D+ + +L A
Sbjct: 52 YREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEA------------DT 99
Query: 160 LITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
++I ++ PKP ++AV G +G G++L AAD R + + F E+ G
Sbjct: 100 AARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAG 156
Score = 57.6 bits (140), Expect = 3e-10
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 17/106 (16%)
Query: 9 YKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEE 68
+ + V Q + + ++RP NAM ++ EI D L ++
Sbjct: 23 NEFVSVVA-DQGLATLVVSRP--------------PTNAMTRQVYREIVAAADELGRRDD 67
Query: 69 CRVIILSAAGKIFTAGLDLSGM--LSLGQEIAEQEDIGECFDSLSE 112
++L +IF+AG D+ + L+ + E D+++
Sbjct: 68 IGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAA 113
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 82.6 bits (205), Expect = 3e-19
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 17/116 (14%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ + D L + V +L+ AG F AG+DL + E +
Sbjct: 45 RALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEGRGLGFT------- 97
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
KP+I+AV G + GG L A D+ A +D+ F + EV G
Sbjct: 98 ----------ERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRG 143
Score = 65.3 bits (160), Expect = 5e-13
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 1 MASFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECF 60
++ DT ++V + ++ + +NRP N+ +N + + +
Sbjct: 6 VSELNGDTEPEVLVEQ-RDRILIITINRPKAKNS-------------VNAAVSRALADAM 51
Query: 61 DSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGE 105
D L + V IL+ AG F AG+DL + E +G
Sbjct: 52 DRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEGRGLGF 96
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 82.2 bits (204), Expect = 3e-19
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+I ++ NE+ RVIVL+ G+ F AG D+ M E +
Sbjct: 35 AEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLN----------- 83
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
L P+I+AV+G +GGG L + D+ A+ A F EV++G
Sbjct: 84 ---QFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLG 136
Score = 64.5 bits (158), Expect = 9e-13
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 9 YKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEE 68
+ ++ + V +EL RPD LNA ++ M EI ++ NE+
Sbjct: 4 FVSIAARQ-EGAVGIIELARPDVLNA-------------LSRQMVAEIVAAVEAFDRNEK 49
Query: 69 CRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSE 112
RVI+L+ G+ F AG D+ M E + +D LS
Sbjct: 50 VRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQFADWDRLSI 93
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 81.5 bits (202), Expect = 7e-19
Identities = 39/209 (18%), Positives = 61/209 (29%), Gaps = 71/209 (33%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
Y + + + V +NRP+ NA T+ E+ + F +++
Sbjct: 11 EYDEIKYEF-YEGIAKVTINRPEVRNAFT------------PKTVA-EMIDAFSRARDDQ 56
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKI 127
VI+L+ G
Sbjct: 57 NVSVIVLTGEG----------------------------------------------DLA 70
Query: 128 FTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACI 187
F +G D G +Q I R + Q+ I PKPVI+ V G +
Sbjct: 71 FCSGGDQKKRGHGGYVGEDQ--------IPRLNVLDLQRLI---RIIPKPVIAMVKGYAV 119
Query: 188 GGGMSLITAADIRYATKDAWFTLKEVDIG 216
GGG L D+ A +A F +G
Sbjct: 120 GGGNVLNVVCDLTIAADNAIFGQTGPKVG 148
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 81.4 bits (202), Expect = 7e-19
Identities = 30/215 (13%), Positives = 65/215 (30%), Gaps = 74/215 (34%)
Query: 3 SFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDS 62
+ + L V + + + L+ K N+ + + E D
Sbjct: 2 TAVETKKQYLTVFK-EDGIAEIHLHIN--------------KSNSYDLEFYKEFNAAIDD 46
Query: 63 LSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLS 122
+ + + +V+I+ +
Sbjct: 47 IRFDPDIKVVIVMSDVP------------------------------------------- 63
Query: 123 AAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV 182
K F+AG D++ + S + +++ + R P+ I+ +
Sbjct: 64 ---KFFSAGADINFLRSADPRFK------------TQFCLFCNETLDKIARSPQVYIACL 108
Query: 183 HGACIGGGMSLITAADIRYATKDAW-FTLKEVDIG 216
G +GGG+ + A D+R+ +A L EV +G
Sbjct: 109 EGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLG 143
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 81.5 bits (202), Expect = 8e-19
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 14/117 (11%)
Query: 100 QEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRK 159
++ L ++ + I+++ + K F AG D+ M L A D
Sbjct: 54 MNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTAD---------- 103
Query: 160 LITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+ + L P I+AV G +GGG L D+ A A F E+ +G
Sbjct: 104 ----FFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLG 156
Score = 63.7 bits (156), Expect = 2e-12
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
TY+T++V Q V + LNRP LNA +N + E+ L ++
Sbjct: 23 TYETILVER-DQRVGIITLNRPQALNA-------------LNSQVMNEVTSAATELDDDP 68
Query: 68 ECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSE 112
+ II++ + K F AG D+ M L A D + L+
Sbjct: 69 DIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAA 113
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 82.7 bits (205), Expect = 1e-18
Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 11/132 (8%)
Query: 85 LDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEI 144
L + SL ++ ++ ++ + + IV++ A F+ G D+SG + +
Sbjct: 23 LINPPVNSLSFDVLY--NLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEMQKGN 80
Query: 145 AEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATK 204
++ + + LE KP ++A+ G +GGG+ L A R +
Sbjct: 81 VKE---------PKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAP 131
Query: 205 DAWFTLKEVDIG 216
A L E+ +G
Sbjct: 132 AAQLGLPELQLG 143
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 80.3 bits (199), Expect = 2e-18
Identities = 40/210 (19%), Positives = 66/210 (31%), Gaps = 76/210 (36%)
Query: 9 YKTLVVHVP--KQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSEN 66
++ ++ V ++LNRP LN A+ + + E+ + ++ E+
Sbjct: 3 FQYIITEKKGKNSSVGLIQLNRPKALN-------------ALCNGLIEELNQALETFEED 49
Query: 67 EECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGK 126
I+L T G K
Sbjct: 50 PAVGAIVL-------TGG----------------------------------------EK 62
Query: 127 IFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGAC 186
F AG D+ M + + + + R KPVI+AV+G
Sbjct: 63 AFAAGADIKEMQNRTFQDCYSGK--------------FLSHWDHITRIKKPVIAAVNGYA 108
Query: 187 IGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+GGG L DI YA + A F E+ +G
Sbjct: 109 LGGGCELAMMCDIIYAGEKAQFGQPEILLG 138
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 78.8 bits (195), Expect = 6e-18
Identities = 27/116 (23%), Positives = 37/116 (31%), Gaps = 14/116 (12%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ F + E V VL F AG DL M +
Sbjct: 41 AALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHG----------- 89
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
S R KPVI+A+ G + GG+ L D+R +DA + G
Sbjct: 90 ---PGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWG 142
Score = 59.9 bits (146), Expect = 4e-11
Identities = 22/111 (19%), Positives = 31/111 (27%), Gaps = 14/111 (12%)
Query: 2 ASFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFD 61
S + + + V V V LNRP NA ++ + F
Sbjct: 3 GSMSEEMQPAVRVEKAGP-VTTVILNRPHARNA-------------VDGPTAAALLAAFT 48
Query: 62 SLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSE 112
+ E V +L F AG DL M + G S
Sbjct: 49 EFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHGPGPMGPSRLR 99
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 79.4 bits (196), Expect = 6e-18
Identities = 26/212 (12%), Positives = 54/212 (25%), Gaps = 57/212 (26%)
Query: 6 PDTYKTLVVHV-PKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLS 64
+ TL + P++ V + ++ +N + + +I +L
Sbjct: 26 TNIGSTLRIIEEPQRDVYWIHMHADLAINPGR---------ACFSTRLVDDITGYQTNLG 76
Query: 65 ENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAA 124
+ + +VL++
Sbjct: 77 QRLN------------------------------------------TAGVLAPHVVLASD 94
Query: 125 GKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHG 184
+F G DL+ L +E + + +R + I+ V G
Sbjct: 95 SDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRG-----VHAFHVGLGARAHSIALVQG 149
Query: 185 ACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+GGG + A + L EV
Sbjct: 150 NALGGGFEAALSCHTIIAEEGVMMGLPEVLFD 181
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 78.8 bits (195), Expect = 7e-18
Identities = 38/212 (17%), Positives = 61/212 (28%), Gaps = 66/212 (31%)
Query: 5 TPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLS 64
Y ++ + + + +NRP K NA T++ E+ + F +
Sbjct: 5 IAKHYDDILYYK-AGGIAKIVINRPHKRNAFR------------PQTVF-ELYDAFCNAR 50
Query: 65 ENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAA 124
E+ V++L+ AG S
Sbjct: 51 EDNRIGVVLLTGAGP-----------------------------------------HSDG 69
Query: 125 GKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHG 184
F +G D S G + + R + PK VI+ V G
Sbjct: 70 KYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLI-----------RSMPKVVIALVAG 118
Query: 185 ACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
IGGG L D+ A +A F +G
Sbjct: 119 YAIGGGHVLHLVCDLTIAADNAIFGQTGPKVG 150
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 78.7 bits (195), Expect = 7e-18
Identities = 40/196 (20%), Positives = 65/196 (33%), Gaps = 72/196 (36%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V+ + +NRP+ NA+ N + + +G+ + + E R ++L+ AG
Sbjct: 19 VMVITINRPEARNAI-------------NAAVSIGVGDALEEAQHDPEVRAVVLTGAG-- 63
Query: 81 FTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSL 140
K F AG DL +
Sbjct: 64 --------------------------------------------DKSFCAGADLKAI--- 76
Query: 141 GQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIR 200
AR+ + + + KP I+AV+G +GGG L A+D+
Sbjct: 77 ----------ARRENLYHPDHPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLV 126
Query: 201 YATKDAWFTLKEVDIG 216
A + A F L EV G
Sbjct: 127 VADERAQFGLPEVKRG 142
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 77.9 bits (193), Expect = 1e-17
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ + D L + + V +++ AG F AG+DL +S ++E+
Sbjct: 37 QGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGLGFTN------- 89
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
KP+I+AV G + GG L+ + D+ A + A F + EV G
Sbjct: 90 -----------VPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRG 134
Score = 60.2 bits (147), Expect = 3e-11
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V+ + +NRPD NA +N + + D L + + V I++ AG
Sbjct: 17 VLLITINRPDARNA-------------VNRAVSQGLAAAADQLDSSADLSVAIITGAGGN 63
Query: 81 FTAGLDLSGMLSLGQEIAEQED 102
F AG+DL +S ++E+
Sbjct: 64 FCAGMDLKAFVSGEAVLSERGL 85
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 79.2 bits (196), Expect = 2e-17
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
++ + D++ + + +++S+ +F G D++ + + + L
Sbjct: 38 NELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAE---------LIAG 88
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
K S E P ++A++G +GGG+ + AAD R A L EV +G
Sbjct: 89 NLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLG 144
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 78.5 bits (193), Expect = 3e-17
Identities = 33/213 (15%), Positives = 61/213 (28%), Gaps = 59/213 (27%)
Query: 6 PDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSE 65
P YK + V + ++ + + KLN+ + + +E+ + +
Sbjct: 17 PSQYKHWKLSF-NGPVATLGIDIAEDGGIRDGY---KLKLNSYDLGVDIELHDAIQRIRF 72
Query: 66 NEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAG 125
E V++ S
Sbjct: 73 EH---------------------------------------------PEVRTVVLTSLKD 87
Query: 126 KIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGA 185
++F +G ++ + A K + T S ++AV+GA
Sbjct: 88 RVFCSGANIFMLGLS--------THAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGA 139
Query: 186 CIGGGMSLITAADIRYATKD--AWFTLKEVDIG 216
C GGG L A D Y D + +L EV +
Sbjct: 140 CAGGGYELALACDEIYLVDDRSSSVSLPEVPLL 172
Score = 36.1 bits (83), Expect = 0.007
Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 17/137 (12%)
Query: 86 DLSGMLSLGQE---IAEQEDIGECFDSLSENE-ECRVIVLSAAGKIFTAGLDLSGMLSLG 141
+ +++ G + + + S+ NE V G D +L+
Sbjct: 293 SIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEG-------DARHLLAAD 345
Query: 142 QEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAV-HGACIGGGMS-LITAADI 199
+ + +D +R+ I +++++ ++ + + + + G+C G + L AAD
Sbjct: 346 ASLMQHKDHW----FVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADR 401
Query: 200 RYATKDAWFTLKEVDIG 216
Y +E I
Sbjct: 402 TYMAALPANEDEEPAIT 418
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 75.4 bits (186), Expect = 4e-16
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 18/116 (15%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
++ + + IV+ A F AG D+ G + +A V
Sbjct: 50 REVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVDE-------- 101
Query: 161 ITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIG 216
++R KPV++A+ G +GGG+ L R A A L EV +G
Sbjct: 102 ----------IQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLG 147
Score = 45.0 bits (107), Expect = 7e-06
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 44 KLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDI 103
+NA++ T+ E+ + + I++ A F AG D+ G + +
Sbjct: 40 PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPG----LAL 95
Query: 104 GECFDSLSENEECRVIVLSA 123
G D + + + VL+A
Sbjct: 96 GSLVDEI---QRYQKPVLAA 112
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 55.9 bits (135), Expect = 2e-09
Identities = 35/195 (17%), Positives = 59/195 (30%), Gaps = 66/195 (33%)
Query: 23 HVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAG-KIF 81
V LN LNA++ M + + ++ ++L +G K F
Sbjct: 54 VVTLNVEKALNALDLD-------------MVRAMTVQLNLWKKDPLIACVVLDGSGEKAF 100
Query: 82 TAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLG 141
AG G D+ + + + G
Sbjct: 101 CAG---------G-------DVRALYHASVAAK--------------------------G 118
Query: 142 QEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRY 201
Q + + L L+ TY KPV+ G +GGG+ L+ A +
Sbjct: 119 QVTEVAKVFFEEEYRLDYLLHTY----------GKPVLVWGDGIVMGGGLGLMAGASHKV 168
Query: 202 ATKDAWFTLKEVDIG 216
T+ + + EV IG
Sbjct: 169 VTETSRIAMPEVTIG 183
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 54.6 bits (132), Expect = 4e-09
Identities = 38/195 (19%), Positives = 60/195 (30%), Gaps = 70/195 (35%)
Query: 23 HVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAG-KIF 81
+ LNRP LNA + M +I ++ E +II+ AG K F
Sbjct: 18 VITLNRPKFLNA-------------LTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAF 64
Query: 82 TAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLG 141
AG G DI ++ ++
Sbjct: 65 CAG----G------------DIRVISEAEKAKQKI------------------------- 83
Query: 142 QEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIRY 201
R+ +L + + KP ++ +HG +GGG+ L R
Sbjct: 84 -----APVFFREEYMLNNAVGSC----------QKPYVALIHGITMGGGVGLSVHGQFRV 128
Query: 202 ATKDAWFTLKEVDIG 216
AT+ F + E IG
Sbjct: 129 ATEKCLFAMPETAIG 143
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory
domains, kinase transferase, PSI-2, protein structure
initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Length = 446
Score = 35.7 bits (83), Expect = 0.008
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKL 160
+ + + + I+ SA GK ++ +L L + + + +
Sbjct: 18 NQFKKVKGIIDSDANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNGIPFD--DVFKLI 75
Query: 161 ITTYQKSISSLE 172
Y + +S L
Sbjct: 76 SQRYTEIVSELN 87
Score = 27.6 bits (62), Expect = 3.6
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 56 IGECFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQ-EDIGECFDSLSE 112
+ + + + II SA GK ++ +L L + + F +S+
Sbjct: 20 FKKVKGIIDSDANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNGIPFDDVFKLISQ 77
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.011
Identities = 31/205 (15%), Positives = 57/205 (27%), Gaps = 54/205 (26%)
Query: 49 NHTMWLEIGE----CFDSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIG 104
+H M E GE D LS E+ F D + + + I +E+I
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDA-----------FVDNFDCKDVQDMPKSILSKEEID 52
Query: 105 ECFDSLSENEECRVI--VLSAAG----KIFTAGLDLSGMLSLGQEIAEQE---------- 148
S + L + + F + L I ++
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 149 -----------DVARKSKILR-KLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITA 196
V K + R + ++++ L P + + G +G G + +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR--PAKNV-LIDGV-LGSGKTWVAL 168
Query: 197 ADIR-YATKDA------WFTLKEVD 214
Y + W LK +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCN 193
Score = 34.4 bits (78), Expect = 0.027
Identities = 32/259 (12%), Positives = 68/259 (26%), Gaps = 81/259 (31%)
Query: 16 VPKQFVVHVELNRPDKLNAMN--------------HTM------WL-------PDKLNAM 48
K V +R + + W+ M
Sbjct: 126 FAKYNV-----SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 49 NHTM-WLEIGECF--DSLSENEE--CRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQE-- 101
+ + WL + C +++ E + I +T+ D S + L + E
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQI-----DPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 102 ----------------DI--GECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQE 143
++ + +++ N C++++ + ++ LS +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLTTRFKQVTDF---LSAATTTHIS 290
Query: 144 IAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGG--GMSLITAADIRY 201
+ ++ L+ L P +S+I A IR
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDL---P-------REVLTTNPRRLSII-AESIR- 338
Query: 202 ATKDAWFTLKEVDIGKWKT 220
W K V+ K T
Sbjct: 339 DGLATWDNWKHVNCDKLTT 357
Score = 33.7 bits (76), Expect = 0.052
Identities = 26/186 (13%), Positives = 58/186 (31%), Gaps = 44/186 (23%)
Query: 10 KTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHT--------MW-LEIGECF 60
+ L+ + + + + KL + L L + + + + F
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 61 DSLSENEECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIV 120
+ C++++ + L + +L+ +E + ++
Sbjct: 263 NL-----SCKILLTTR---------FKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLL 307
Query: 121 LSAAGKIFTAGLDL-----SGM---LSLGQEIAE--QEDVAR----KSKILRKLITTYQK 166
L DL + LS+ IAE ++ +A K KL T +
Sbjct: 308 LKYLDCRPQ---DLPREVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 167 SISSLE 172
S++ LE
Sbjct: 362 SLNVLE 367
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.032
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 17/89 (19%)
Query: 136 GMLSLGQEIAEQEDVARK--SKILRKLITTYQKSISSLERCPKPVISAVHGACIGG---- 189
GM G ++ + A+ ++ TY SI + PV +H G
Sbjct: 1630 GM---GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI-NNPVNLTIHFGGEKGKRIR 1685
Query: 190 ----GMSLITAADIRYATKDAWFTLKEVD 214
M T D + T+ KE++
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKI---FKEIN 1711
Score = 27.7 bits (61), Expect = 3.8
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 41/106 (38%)
Query: 121 LSAAG----KIFTA-GLDLSGMLSLGQEIAE---QEDVARKSKILRKLITTYQKSISSLE 172
A G ++ G GQ + +E LR L TY + L
Sbjct: 146 FRAVGEGNAQLVAIFG---------GQGNTDDYFEE--------LRDLYQTYHVLVGDL- 187
Query: 173 RCPKPVISAVHGACIGGGMSLITAADIRYATKDAWFTLKEVDIGKW 218
I LI + FT + ++I +W
Sbjct: 188 ------IKFSAETL----SELIRTT----LDAEKVFT-QGLNILEW 218
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour
suppressor, DNA damage, DNA recombination, DNA repair,
hydrolase, magnesium; NMR {Mus musculus}
Length = 87
Score = 30.3 bits (68), Expect = 0.11
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 147 QEDVARKSKILRKLITTYQKSISSLERCPKPVIS 180
E + R +QK++ SL+R P P+ S
Sbjct: 23 TEWRDEAASRGRHTRFVFQKALRSLQRYPLPLRS 56
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA
(guanine-7-)-methyltransferase, structural GEN
infectious diseases; 2.35A {Staphylococcus aureus subsp}
Length = 269
Score = 31.0 bits (71), Expect = 0.23
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 101 EDIGECFDSLSENEECRVIVLSAAGKIFT 129
E + + L E+ RVI++ G+ F+
Sbjct: 89 EPVFNAMEDLDVTEQARVILMCPQGEPFS 117
Score = 30.6 bits (70), Expect = 0.33
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 56 IGECFDSLSENEECRVIILSAAGKIFT 82
+ + L E+ RVI++ G+ F+
Sbjct: 91 VFNAMEDLDVTEQARVILMCPQGEPFS 117
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump,
carboxyltransferase, lyase; 2.20A {Acidaminococcus
fermentans} SCOP: c.14.1.4 c.14.1.4
Length = 587
Score = 28.9 bits (65), Expect = 1.5
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 177 PVISAVHGACIGGG 190
PVI ++G GG
Sbjct: 183 PVIVGIYGTNPAGG 196
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit;
carboxyltransferase, beta-BETA-alpha superhelix, ligase;
HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B*
3u9t_B
Length = 555
Score = 28.3 bits (64), Expect = 1.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 177 PVISAVHGACIGGG 190
P I+ V G+C GG
Sbjct: 199 PQIAVVMGSCTAGG 212
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle
structural genomics center for infect disease, tRNA
methyl transferase; 2.25A {Anaplasma phagocytophilum}
Length = 253
Score = 27.9 bits (63), Expect = 2.3
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 103 IGECFDSL-SENEECRVIVLSAAGKIFT 129
+G C D + S + +++ S G FT
Sbjct: 88 LGRCIDEVLSLHPNTKLMFTSPRGVSFT 115
Score = 27.5 bits (62), Expect = 3.4
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 56 IGECFDSL-SENEECRVIILSAAGKIFT 82
+G C D + S + +++ S G FT
Sbjct: 88 LGRCIDEVLSLHPNTKLMFTSPRGVSFT 115
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport,
biotin, glutamate fermentation, lyase; HET: COO; 1.75A
{Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Length = 588
Score = 28.1 bits (63), Expect = 2.4
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 177 PVISAVHGACIGGG 190
PVI ++G GG
Sbjct: 184 PVIVGIYGTNPAGG 197
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387,
stronGly BENT five-stranded antiparallel beta- sheet,
structural genomics, PSI; NMR {Danio rerio} SCOP:
b.38.1.5 PDB: 2vxf_A
Length = 95
Score = 26.7 bits (59), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 187 IGGGMSLITAADIRYA-------TKDAWFTLKEV 213
IG +SLI+ A+IRY T+++ L +V
Sbjct: 18 IGSKISLISKAEIRYEGILYTIDTENSTVALAKV 51
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM
proteins, translational repression, transcription; NMR
{Drosophila melanogaster}
Length = 88
Score = 26.7 bits (59), Expect = 2.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 187 IGGGMSLITAADIRY 201
+G +SLI+ ADIRY
Sbjct: 12 LGSKISLISKADIRY 26
>3quv_A TRNA (guanine-N(1)-)-methyltransferase; sssgcid, seattle structural
genomics center for infectious D ssgcid, tRNA
methyltransferase; 1.70A {Mycobacterium abscessus}
Length = 246
Score = 27.5 bits (62), Expect = 2.9
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 103 IGECFDSLSENEECRVIVLSAAGKIFT 129
G+ D + E ++V + AG FT
Sbjct: 70 WGDALDEICT-SETLLVVPTPAGYPFT 95
Score = 27.1 bits (61), Expect = 3.7
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 56 IGECFDSLSENEECRVIILSAAGKIFT 82
G+ D + E +++ + AG FT
Sbjct: 70 WGDALDEICT-SETLLVVPTPAGYPFT 95
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD,
tRNA (M1G37) methyltransferase, B structure funded by
NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4
Length = 257
Score = 27.5 bits (62), Expect = 3.6
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 101 EDIGECFDSL-SENEECRVIVLSAAGKIFT 129
E I E +D + + V++ G+
Sbjct: 68 EPIYEAYDYVVENYGKPFVLITEPWGEKLN 97
Score = 26.7 bits (60), Expect = 5.1
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 56 IGECFDSL-SENEECRVIILSAAGKIFT 82
I E +D + + V+I G+
Sbjct: 70 IYEAYDYVVENYGKPFVLITEPWGEKLN 97
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain,
alloste S-adenosylmethionine, lysine, allosteric
effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis
thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Length = 510
Score = 27.4 bits (61), Expect = 4.0
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 110 LSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSIS 169
L+ EE VIVLSA GK L E + L + + +++
Sbjct: 52 LTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASE-----IEELSIIKELHIRTVK 106
Query: 170 SLE 172
L
Sbjct: 107 ELN 109
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: PLP; 1.50A {Clostridium
difficile} PDB: 4dgt_A*
Length = 391
Score = 27.1 bits (61), Expect = 4.7
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 107 FDSLSENEECRVIVLSAAGKIF-TAGLDLS 135
S+S+ E I A K F AGL S
Sbjct: 219 MASISKEFEKNTITCMAPTKTFNIAGLQSS 248
Score = 26.7 bits (60), Expect = 6.5
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 60 FDSLSENEECRVIILSAAGKIF-TAGLDLS 88
S+S+ E I A K F AGL S
Sbjct: 219 MASISKEFEKNTITCMAPTKTFNIAGLQSS 248
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 27.0 bits (60), Expect = 5.1
Identities = 19/98 (19%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 93 LGQEIAEQEDIGECFDSL-----SENEECRVIVLSAAGKIFTAGLD-----LSGMLSLGQ 142
+G+ ++ E +S E+ + ++ +L+A K+F + +LSL
Sbjct: 452 VGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLAT 511
Query: 143 EIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVIS 180
+ ++ D+ + I +L++T + + KP+IS
Sbjct: 512 QDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKPLIS 549
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric
regulation, ACT domain, transferase, amino acid
biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP:
c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Length = 449
Score = 26.8 bits (60), Expect = 5.9
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 97 IAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQEDVARKSKI 156
+A+ + + D + + R++VLSA+ I T L +AE + + +
Sbjct: 14 VADFDAMNRSADIVLSDANVRLVVLSASAGI-TNLL---------VALAEGLEPGERFEK 63
Query: 157 LRKLITTYQKSISSLE 172
L + + L
Sbjct: 64 LDAIRNIQFAILERLR 79
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 26.7 bits (60), Expect = 6.8
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 107 FDSLSENEECRVIVLSAAGKIF-TAGLDLS 135
F S+ E + I +A K F AG+ +S
Sbjct: 219 FQSIDEQLADKTITFTAPSKTFNIAGMGMS 248
Score = 26.3 bits (59), Expect = 9.6
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 60 FDSLSENEECRVIILSAAGKIF-TAGLDLS 88
F S+ E + I +A K F AG+ +S
Sbjct: 219 FQSIDEQLADKTITFTAPSKTFNIAGMGMS 248
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 26.8 bits (60), Expect = 6.9
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 107 FDSLSENEECRVIVLSAAGKIF-TAGLDLS 135
++L + + I+LS+A K F AG S
Sbjct: 249 LNTLDASYKDFTIILSSATKTFNIAGTKNS 278
Score = 26.4 bits (59), Expect = 9.7
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 60 FDSLSENEECRVIILSAAGKIF-TAGLDLS 88
++L + + IILS+A K F AG S
Sbjct: 249 LNTLDASYKDFTIILSSATKTFNIAGTKNS 278
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 26.7 bits (60), Expect = 6.9
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 107 FDSLSENEECRVIVLSAAGKIF-TAGLDLS 135
F SLSE R I A K F AGL S
Sbjct: 211 FASLSEELAARTITCMAPSKTFNIAGLQAS 240
Score = 26.3 bits (59), Expect = 9.6
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 60 FDSLSENEECRVIILSAAGKIF-TAGLDLS 88
F SLSE R I A K F AGL S
Sbjct: 211 FASLSEELAARTITCMAPSKTFNIAGLQAS 240
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 26.8 bits (60), Expect = 6.9
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 94 GQEIAEQEDIGECF-DSLSENEECRVIVLSAAGKIFTAG 131
+++ E + +S E+ R++ L AA + T G
Sbjct: 309 KKKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLG 347
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 26.7 bits (60), Expect = 7.1
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 107 FDSLSENEECRVIVLSAAGKIF-TAGLDLS 135
F+++S + + +VLS+A K F AG S
Sbjct: 219 FNTVSPDFKDFALVLSSATKTFNIAGTKNS 248
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 26.3 bits (59), Expect = 7.8
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 107 FDSLSENEECRVIVLSAAGKIF-TAGLDLS 135
++ + + V+ L + K F A L +
Sbjct: 215 AFTVDWDAKNWVVSLISPSKTFNLAALHAA 244
>1vim_A Hypothetical protein AF1796; structural genomics, unknown
function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Length = 200
Score = 26.1 bits (58), Expect = 9.2
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 35 MNHTMWLPDKLNAMNHTMWLEIGEC---FDSLSENEECRVI-ILSAAGKIFTAGLDLSGM 90
M H ++ + + + + +I ++ +A IF G SG
Sbjct: 1 MGHHHHHHGGHMSLLRFLEVVSEHIKNLRNHIDLETVGEMIKLIDSARSIFVIGAGRSGY 60
Query: 91 LSLGQEIA 98
+ + A
Sbjct: 61 --IAKAFA 66
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET:
AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8
d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Length = 334
Score = 26.2 bits (57), Expect = 9.6
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 148 EDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLI 194
D + K L+K + + KPVI HGA G G L
Sbjct: 99 SDRNLERKWLKKAGIRVPEVYEDPDDIEKPVIVKPHGAKGGKGYFLA 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,332,029
Number of extensions: 190450
Number of successful extensions: 945
Number of sequences better than 10.0: 1
Number of HSP's gapped: 777
Number of HSP's successfully gapped: 194
Length of query: 220
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 130
Effective length of database: 4,188,903
Effective search space: 544557390
Effective search space used: 544557390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)