RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8151
(220 letters)
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 77.5 bits (189), Expect = 1e-17
Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 61/210 (29%)
Query: 9 YKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEE 68
Y+++ V ++ V+HV+LNRP+K NAMN W E+ ECF +S++ +
Sbjct: 2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRA-------------FWRELVECFQKISKDSD 48
Query: 69 CRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIF 128
CR +++S AGK+FT+G+DL M + G+ ++
Sbjct: 49 CRAVVVSGAGKMFTSGIDLMDMA-----SDILQPPGDDVARIAWYLRDL----------- 92
Query: 129 TAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIG 188
I+ YQK+ + +E+CPKPVI+A+HG CIG
Sbjct: 93 --------------------------------ISRYQKTFTVIEKCPKPVIAAIHGGCIG 120
Query: 189 GGMSLITAADIRYATKDAWFTLKEVDIGKW 218
GG+ LI+A DIRY T+DA+F +KEVD+G
Sbjct: 121 GGVDLISACDIRYCTQDAFFQVKEVDVGLA 150
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 74.4 bits (182), Expect = 9e-17
Identities = 39/210 (18%), Positives = 66/210 (31%), Gaps = 76/210 (36%)
Query: 9 YKTLVVHV--PKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSEN 66
++ ++ V ++LNRP LNA + + +
Sbjct: 3 FQYIITEKKGKNSSVGLIQLNRPKALNA-------------LCNGLI------------- 36
Query: 67 EECRVIILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGK 126
E++ + ++ E+ IVL+ K
Sbjct: 37 ----------------------------------EELNQALETFEEDPAVGAIVLTGGEK 62
Query: 127 IFTAGLDLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGAC 186
F AG D+ M + + + + R KPVI+AV+G
Sbjct: 63 AFAAGADIKEMQNRTFQDCYSGK--------------FLSHWDHITRIKKPVIAAVNGYA 108
Query: 187 IGGGMSLITAADIRYATKDAWFTLKEVDIG 216
+GGG L DI YA + A F E+ +G
Sbjct: 109 LGGGCELAMMCDIIYAGEKAQFGQPEILLG 138
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 297
Score = 59.8 bits (143), Expect = 2e-11
Identities = 28/181 (15%), Positives = 42/181 (23%), Gaps = 54/181 (29%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V V NRP+ NA E+ D + + V++L+ G
Sbjct: 30 TVRVAFNRPEVRNA-------------FRPHTVDELYRVLDHARMSPDVGVVLLTGNGPS 76
Query: 81 FTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGLDLSGMLSL 140
G + D+ + R L
Sbjct: 77 PKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRL------------------- 117
Query: 141 GQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADIR 200
+ + PK VI V+G GGG SL D+
Sbjct: 118 ----------------------HILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLT 155
Query: 201 Y 201
Sbjct: 156 L 156
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 53.2 bits (126), Expect = 3e-09
Identities = 38/206 (18%), Positives = 65/206 (31%), Gaps = 69/206 (33%)
Query: 13 VVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVI 72
+V V K V V LN P++ N ++ M
Sbjct: 1 MVQVEKGHVAVVFLNDPERRNP-------------LSPEMA------------------- 28
Query: 73 ILSAAGKIFTAGLDLSGMLSLGQEIAEQEDIGECFDSLSENEECRVIVLSAAGKIFTAGL 132
+ + D L + R +VL+ GK F+AG
Sbjct: 29 ----------------------------LSLLQALDDLEADPGVRAVVLTGRGKAFSAGA 60
Query: 133 DLSGMLSLGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMS 192
DL+ + + ++ + + + + PKP ++AV+G + GG
Sbjct: 61 DLAFL---------ERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAG 111
Query: 193 LITAADIRYATKDAWFTLKEVDIGKW 218
L A D+ ++A EV IG
Sbjct: 112 LALACDLVVMDEEARLGYTEVKIGFV 137
>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit,
N-terminal domain {Pseudomonas fragi [TaxId: 296]}
Length = 310
Score = 52.0 bits (123), Expect = 1e-08
Identities = 10/75 (13%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 9 YKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEE 68
K + V + +V ++ + + +N N E+ + D++ +
Sbjct: 5 GKAITVTALESGIVELKFDLK------------GESVNKFNRLTLNELRQAVDAIKADAS 52
Query: 69 CRVIILSAAGKIFTA 83
+ +I+S+ +F
Sbjct: 53 VKGVIVSSGKDVFIV 67
>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218
{Thermus thermophilus [TaxId: 274]}
Length = 263
Score = 50.6 bits (119), Expect = 3e-08
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 15/74 (20%)
Query: 1 MASFTPDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECF 60
+AS Y L P+ V+ + +KLNAM + + +
Sbjct: 1 LASLEAR-YPGLAFAWPRPGVLEITFR--------------GEKLNAMPPALHRGLARVW 45
Query: 61 DSLSENEECRVIIL 74
L E R ++L
Sbjct: 46 RDLEAVEGVRAVLL 59
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase
{Pseudomonas sp., strain CBS-3 [TaxId: 306]}
Length = 269
Score = 49.0 bits (115), Expect = 8e-08
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 9 YKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEE 68
Y+ + V + V + + P NA ++ E+ + + E++
Sbjct: 2 YEAIGHRV-EDGVAEITIKLPRHRNA-------------LSVKAMQEVTDALNRAEEDDS 47
Query: 69 CRVIILSAAGKIFTAGLDLSGM 90
++++ A F AG L +
Sbjct: 48 VGAVMITGAEDAFCAGFYLREI 69
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 47.7 bits (112), Expect = 3e-07
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
+ L PD LNA + ++ +GE + N + I+ ++G+
Sbjct: 15 FFIIHLINPDNLNA-------------LEGEDYIYLGELLELADRNRDVYFTIIQSSGRF 61
Query: 81 FTAGLDLSGMLSLGQEIAEQED 102
F++G D G+ + +
Sbjct: 62 FSSGADFKGIAKAQGDDTNKYP 83
>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA
isomerase {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 42.8 bits (99), Expect = 9e-06
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 9 YKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEE 68
++TLVV + + + NRP K NA+N M+ EI + ++
Sbjct: 2 FETLVVTS-EDGITKIMFNRPKK-------------KNAINTEMYHEIMRALKAA-SKDD 46
Query: 69 CRVIILSAAGKIFTAGLDLSGM 90
+ +L+ G +++G DL+
Sbjct: 47 SIITVLTGNGDYYSSGNDLTNF 68
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 42.4 bits (98), Expect = 1e-05
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 7 DTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSEN 66
D + + + +V + +NR N+ ++ + + + D+L +
Sbjct: 2 DELRVRHLEEENRGIVVLGINRAYGKNS-------------LSKNLIKMLSKAVDALKSD 48
Query: 67 EECRVIILSAAGKIFTAG 84
++ R II+ +
Sbjct: 49 KKVRTIIIRSEVPGIFCA 66
>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus
erythropolis [TaxId: 1833]}
Length = 249
Score = 41.2 bits (95), Expect = 4e-05
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 14/67 (20%)
Query: 6 PDTYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSE 65
Y+ + + V+ V ++ K T E+ CF ++
Sbjct: 9 SQKYENIRLER-DGGVLLVTVHTEGKSLV-------------WTSTAHDELAYCFHDIAC 54
Query: 66 NEECRVI 72
+ E +V+
Sbjct: 55 DRENKVV 61
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human
(Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 41.0 bits (94), Expect = 4e-05
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 14/66 (21%)
Query: 9 YKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEE 68
Y+ +VV F V R + NA+N + E+ +S ++
Sbjct: 1 YRDIVVKKEDGFTQIVLSTRSTE-------------KNALNTEVIKEMVNALNSA-AADD 46
Query: 69 CRVIIL 74
++++
Sbjct: 47 SKLVLF 52
>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase
{Escherichia coli [TaxId: 562]}
Length = 261
Score = 39.8 bits (91), Expect = 1e-04
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 14/67 (20%)
Query: 8 TYKTLVVHVPKQFVVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENE 67
+Y+ + V V +E N K LNA++ ++ + L+ E
Sbjct: 2 SYQYVNVVT-INKVAVIEFNYGRK-------------LNALSKVFIDDLMQALSDLNRPE 47
Query: 68 ECRVIIL 74
+I+
Sbjct: 48 IRCIILR 54
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 249
Score = 36.7 bits (83), Expect = 0.001
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 14/62 (22%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECRVIILSAAGKI 80
V ++ P +N+++ E+ + L ++ R +IL++
Sbjct: 14 VAVMKFKNP--------------PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPG 59
Query: 81 FT 82
Sbjct: 60 VF 61
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB
{Pectobacterium carotovorum [TaxId: 554]}
Length = 230
Score = 36.4 bits (82), Expect = 0.002
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 13/50 (26%)
Query: 21 VVHVELNRPDKLNAMNHTMWLPDKLNAMNHTMWLEIGECFDSLSENEECR 70
V + L+ P+K N + T+ + + + ++ R
Sbjct: 10 VRVITLDHPNK-------------HNPFSRTLETSVKDALARANADDSVR 46
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 333
Score = 32.3 bits (73), Expect = 0.033
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 177 PVISAVHGACIGGGMSLITAADIRYATKDAWFTL 210
I+ V +G G L+ + L
Sbjct: 242 FTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIIL 275
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish
(Danio rerio) [TaxId: 7955]}
Length = 80
Score = 25.8 bits (57), Expect = 1.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 187 IGGGMSLITAADIRYA-------TKDAWFTLKEV 213
IG +SLI+ A+IRY T+++ L +V
Sbjct: 3 IGSKISLISKAEIRYEGILYTIDTENSTVALAKV 36
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 258
Score = 25.1 bits (54), Expect = 6.3
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 177 PVISAVHGACIGGGMSLITAADIRYATKDAWF 208
P IS V G C GG + D
Sbjct: 162 PQISLVVGPCAGGAVYSPAITDFTVMVDQTSH 193
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438
{Mycoplasma genitalium [TaxId: 2097]}
Length = 193
Score = 24.6 bits (52), Expect = 8.8
Identities = 10/80 (12%), Positives = 18/80 (22%), Gaps = 25/80 (31%)
Query: 140 LGQEIAEQEDVARKSKILRKLITTYQKSISSLERCPKPVISAVHGACIGGGMSLITAADI 199
EQ +A + + + I + +
Sbjct: 139 FTSNKNEQHAIANTLSVFDERLENLASLIEINRK-------------------------L 173
Query: 200 RYATKDAWFTLKEVDIGKWK 219
R F+L E + WK
Sbjct: 174 RDEYAHKLFSLDEAFLSHWK 193
>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 304
Score = 24.8 bits (53), Expect = 9.8
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 110 LSENEECRVIVLSAAGKIFTAGLDLSGMLSLGQEIAEQE 148
L+ EE VIVLSA GK L E
Sbjct: 28 LTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASE 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.267 0.0712 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 797,718
Number of extensions: 34260
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 32
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)