BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8152
(444 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 28/151 (18%)
Query: 82 DVSFGEGDIV--GVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHS 139
D+ E +++ S D I T VK+W T T Q+ C S
Sbjct: 659 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKS 718
Query: 140 N--IIATGGKENDLKLWDLNTTK---NIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGIS 194
N ++ATG + LKLWDLN + +F N VN
Sbjct: 719 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS---------------------VNHCR 757
Query: 195 FLPNSDKVAVCSKQGYVRVYDPKITTQRRPV 225
F P+ + +A CS G +R++D + +R+ +
Sbjct: 758 FSPDDELLASCSADGTLRLWDVRSANERKSI 788
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 28/151 (18%)
Query: 82 DVSFGEGDIV--GVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHS 139
D+ E +++ S D I T VK+W T T Q+ C S
Sbjct: 652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKS 711
Query: 140 N--IIATGGKENDLKLWDLNTTK---NIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGIS 194
N ++ATG + LKLWDLN + +F N VN
Sbjct: 712 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS---------------------VNHCR 750
Query: 195 FLPNSDKVAVCSKQGYVRVYDPKITTQRRPV 225
F P+ + +A CS G +R++D + +R+ +
Sbjct: 751 FSPDDELLASCSADGTLRLWDVRSANERKSI 781
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 26/134 (19%)
Query: 97 DECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLEC--MKHNKHSNIIATGGKENDLKLW 154
D I T VK+W T T Q+ C ++ H ++ATG + LKLW
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Query: 155 DLNTTK---NIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYV 211
DLN + +F N VN F P+ +A CS G +
Sbjct: 735 DLNQKECRNTMFGHTNS---------------------VNHCRFSPDDKLLASCSADGTL 773
Query: 212 RVYDPKITTQRRPV 225
+++D +R+ +
Sbjct: 774 KLWDATSANERKSI 787
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 100 ILTAVKSGDVKLWRYK---TEPDQWTNFNVGPQ--LECM-KHNKHSNIIATGGKENDLKL 153
ILT G +K+W ++ EP Q + G + L C+ +H +++ATGG++ L +
Sbjct: 205 ILTVNSIGQLKIWDFRQQGNEPSQILSL-TGDRVPLHCVDRHPNQQHVVATGGQDGMLSI 263
Query: 154 WDL 156
WD+
Sbjct: 264 WDV 266
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 41/137 (29%)
Query: 107 GDVKLWRYKTEPDQWTNFNVGPQLECMKHN-KHSNI------IATGGKENDLKLWDLNTT 159
G +K+W TNF + + + N H +I IATGGK+ L +WD
Sbjct: 194 GRLKVWN--------TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD---- 241
Query: 160 KNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYD---- 215
+L + EFD +N I+F P VAV + QG V++++
Sbjct: 242 ------------ILNLTYPQREFDAGST--INQIAFNPKLQWVAVGTDQG-VKIFNLMTQ 286
Query: 216 ---PKITTQRRPVLKVD 229
P T + P+ K +
Sbjct: 287 SKAPVCTIEAEPITKAE 303
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 1 MTLADDYNIYIGSSTGAFKGVNLSKDKCIIKNIQNVKYITNKASVLALNWGNVEESELLI 60
++ +DD+ I + +N + + + + +N+ + + A V + W + ES
Sbjct: 198 LSASDDHTICLWD-------INATPKEHRVIDAKNI-FTGHTAVVEDVAWHLLHESLFGS 249
Query: 61 AYSGQKIKIYDTDFKNFNTN-----TDVSFGEGDIVGVSRYDECILTAVKSGD--VKLWR 113
QK+ I+DT +N NT+ D E + + + Y E IL A S D V LW
Sbjct: 250 VADDQKLMIWDT--RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL-ATGSADKTVALWD 306
Query: 114 YKTEPDQWTNFNVGP----QLECMKHNKHSNIIATGGKENDLKLWDLN 157
+ + +F Q++ HN+ I+A+ G + L +WDL+
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNE--TILASSGTDRRLHVWDLS 352
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 1 MTLADDYNIYIGSSTGAFKGVNLSKDKCIIKNIQNVKYITNKASVLALNWGNVEESELLI 60
++ +DD+ I + +N + + + + +N+ + + A V + W + ES
Sbjct: 200 LSASDDHTICLWD-------INATPKEHRVIDAKNI-FTGHTAVVEDVAWHLLHESLFGS 251
Query: 61 AYSGQKIKIYDTDFKNFNTN-----TDVSFGEGDIVGVSRYDECILTAVKSGD--VKLWR 113
QK+ I+DT +N NT+ D E + + + Y E IL A S D V LW
Sbjct: 252 VADDQKLMIWDT--RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL-ATGSADKTVALWD 308
Query: 114 YKTEPDQWTNFNVGP----QLECMKHNKHSNIIATGGKENDLKLWDLN 157
+ + +F Q++ HN+ I+A+ G + L +WDL+
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNE--TILASSGTDRRLHVWDLS 354
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 24/168 (14%)
Query: 1 MTLADDYNIYIGSSTGAFKGVNLSKDKCIIKNIQNVKYITNKASVLALNWGNVEESELLI 60
++ +DD+ I + +N + + + + +N+ + + A V + W + ES
Sbjct: 202 LSASDDHTICLWD-------INATPKEHRVIDAKNI-FTGHTAVVEDVAWHLLHESLFGS 253
Query: 61 AYSGQKIKIYDTDFKNFNTN-----TDVSFGEGDIVGVSRYDECILTAVKSGD--VKLWR 113
QK+ I+DT +N NT+ D E + + + Y E IL A S D V LW
Sbjct: 254 VADDQKLMIWDT--RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL-ATGSADKTVALWD 310
Query: 114 YKTEPDQWTNFNVGP----QLECMKHNKHSNIIATGGKENDLKLWDLN 157
+ + +F Q++ HN+ I+A+ G + L +WDL+
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNE--TILASSGTDRRLHVWDLS 356
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 38 YITNKASVLALNWGNVEESELLIAYSGQKIKIYDTDFKNFNT---NTDVSFGEGDIVGVS 94
+ + A V ++W + ES QK+ I+DT N + + D E + + +
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 95 RYDECILTAVKSGD--VKLWRYKTEPDQWTNFNVGP----QLECMKHNKHSNIIATGGKE 148
Y E IL A S D V LW + + +F Q++ HN+ I+A+ G +
Sbjct: 283 PYSEFIL-ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE--TILASSGTD 339
Query: 149 NDLKLWDLN 157
L +WDL+
Sbjct: 340 RRLNVWDLS 348
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 247 VIVGSTTGDMMAVDLRGKGKPCY-KYKGFAGCVKDIAC-PLNENLILSVSLDRHFRVHDF 304
V VGS GD+M + K KP + K G G + + PLN N + S++ R+ DF
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 18/131 (13%)
Query: 135 HNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGIS 194
H H + +A G K D+ LW+ K + + G+
Sbjct: 128 HPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS----------------ITGLK 171
Query: 195 FLP-NSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGSTT 253
F P N+++ S +G R+ D K R D ++ + + S V+ G
Sbjct: 172 FNPLNTNQFYASSMEGTTRLQDFKGNILRV-FASSDTINIWFCSLDVSASSRMVVTGDNV 230
Query: 254 GDMMAVDLRGK 264
G+++ +++ GK
Sbjct: 231 GNVILLNMDGK 241
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 247 VIVGSTTGDMMAVDLRGKGKPCY-KYKGFAGCVKDIAC-PLNENLILSVSLDRHFRVHDF 304
V VGS GD+M + K KP + K G G + + PLN N + S++ R+ DF
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 247 VIVGSTTGDMMAVDLRGKGKPCY-KYKGFAGCVKDIAC-PLNENLILSVSLDRHFRVHDF 304
V VGS GD+M + K KP + K G G + + PLN N + S++ R+ DF
Sbjct: 136 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 195
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 18/131 (13%)
Query: 135 HNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGIS 194
H H + +A G K D+ LW+ K + + G+
Sbjct: 129 HPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS----------------ITGLK 172
Query: 195 FLP-NSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGSTT 253
F P N+++ S +G R+ D K R D ++ + + S V+ G
Sbjct: 173 FNPLNTNQFYASSMEGTTRLQDFKGNILRV-FASSDTINIWFCSLDVSASSRMVVTGDNV 231
Query: 254 GDMMAVDLRGK 264
G+++ +++ GK
Sbjct: 232 GNVILLNMDGK 242
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 141 IIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPD 180
+I +GG +N +K+WDL T + + K ++ V +V PD
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPD 207
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 47/225 (20%), Positives = 93/225 (41%), Gaps = 47/225 (20%)
Query: 97 DECILTAVKSGDVKLWRYKT-EPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWD 155
D+ I++ ++ +K+W T E + + G L C+++++ +I TG ++ +++WD
Sbjct: 143 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQYDE--RVIITGSSDSTVRVWD 199
Query: 156 LNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYD 215
+NT + + + + VL + F N+ + CSK + V+D
Sbjct: 200 VNTGEMLNTLIHHCEAVL------------------HLRF--NNGMMVTCSKDRSIAVWD 239
Query: 216 ---PKITTQRRPVL----KVDIPDVALSCITTTNQSHYVIVGSTTGDMMAVDLRG--KGK 266
P T RR ++ V++ D I + + + V +T+ L G +G
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 299
Query: 267 PCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVHDFHSKKLLR 311
C +Y+ + L++S S D R+ D LR
Sbjct: 300 ACLQYR--------------DRLVVSGSSDNTIRLWDIECGACLR 330
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T + + L P V+
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKT--------GMCLKTLPAHSDP----------VS 156
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 214
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
D+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 215 LDNDLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Query: 309 LLRK 312
+++K
Sbjct: 274 IVQK 277
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 211 VRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIV-GSTTGDMMAVDLRGKGKPCY 269
+ ++D + T +P VD ++C++ S +++ GS + DLR +
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 270 KYKGFAGCVKDIA-CPLNENLILSVSLDRHFRVHDF 304
++ + + P NE ++ S DR V D
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 211 VRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIV-GSTTGDMMAVDLRGKGKPCY 269
+ ++D + T +P VD ++C++ S +++ GS + DLR +
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 270 KYKGFAGCVKDIA-CPLNENLILSVSLDRHFRVHDF 304
++ + + P NE ++ S DR V D
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 156
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 214
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 215 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 309 LLRK 312
+++K
Sbjct: 274 IVQK 277
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 156
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 214
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 215 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 309 LLRK 312
+++K
Sbjct: 274 IVQK 277
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 156
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 157 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 214
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 215 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 309 LLRK 312
+++K
Sbjct: 274 IVQK 277
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 129 QLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVK 178
Q+ C+ + N I TG + +L+LW N T + + N HR + SVK
Sbjct: 110 QVTCLAWSHDGNSIVTGVENGELRLW--NKTGALLNVLNF-HRAPIVSVK 156
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 170
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 171 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 228
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 229 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 287
Query: 309 LLRK 312
+++K
Sbjct: 288 IVQK 291
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 149
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 150 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 207
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 208 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 266
Query: 309 LLRK 312
+++K
Sbjct: 267 IVQK 270
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 159
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 160 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 217
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 218 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Query: 309 LLRK 312
+++K
Sbjct: 277 IVQK 280
>pdb|4E4J|A Chain A, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|B Chain B, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|C Chain C, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|D Chain D, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|E Chain E, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|F Chain F, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|G Chain G, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|H Chain H, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|I Chain I, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|J Chain J, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|K Chain K, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
pdb|4E4J|L Chain L, Crystal Structure Of Arginine Deiminase From Mycoplasma
Penetrans
Length = 433
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 32 NIQNVKYITNKASVLALNWGNVEESELLIAYSGQKIKIYDTDFK-NFNTNTDVSFGEGDI 90
N++ VK++ K ++ + + +++ +LI +G+ D D + +F+ ++ G +
Sbjct: 325 NVKPVKFVEKKGTLEEVLYSIIDKKPILIPIAGKGANQLDIDIETHFDGTNYLTIAPGVV 384
Query: 91 VGVSRYDECILTAVKSG 107
VG R ++ V++G
Sbjct: 385 VGYERNEKTQKALVEAG 401
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 152
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 153 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 210
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 211 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 269
Query: 309 LLRK 312
+++K
Sbjct: 270 IVQK 273
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 22/77 (28%)
Query: 140 NIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNS 199
++ A+GGK+ LWDLN K++++ D D+ +N + F PN
Sbjct: 228 SLCASGGKDGQAMLWDLNEGKHLYTL--------------DGGDI-----INALCFSPN- 267
Query: 200 DKVAVCSKQG-YVRVYD 215
+ +C+ G ++++D
Sbjct: 268 -RYWLCAATGPSIKIWD 283
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 22/77 (28%)
Query: 140 NIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNS 199
++ A+GGK+ LWDLN K++++ D D+ +N + F PN
Sbjct: 205 SLCASGGKDGQAMLWDLNEGKHLYTL--------------DGGDI-----INALCFSPN- 244
Query: 200 DKVAVCSKQG-YVRVYD 215
+ +C+ G ++++D
Sbjct: 245 -RYWLCAATGPSIKIWD 260
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 153
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 211
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 212 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Query: 309 LLRK 312
+++K
Sbjct: 271 IVQK 274
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 159
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 160 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 217
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 218 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Query: 309 LLRK 312
+++K
Sbjct: 277 IVQK 280
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 158
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 159 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 216
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 217 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 275
Query: 309 LLRK 312
+++K
Sbjct: 276 IVQK 279
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 154
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 155 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 212
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 213 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 271
Query: 309 LLRK 312
+++K
Sbjct: 272 IVQK 275
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 159
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 160 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 217
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 218 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Query: 309 LLRK 312
+++K
Sbjct: 277 IVQK 280
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 153
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 211
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 212 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Query: 309 LLRK 312
+++K
Sbjct: 271 IVQK 274
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 175
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 176 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 233
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 234 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Query: 309 LLRK 312
+++K
Sbjct: 293 IVQK 296
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C N SN+I +G + +++WD+ T K + + L P V+
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------KTLPAHSDP----------VS 177
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F + + S G R++D + ++ D P V+ + + Y++ +
Sbjct: 178 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF--VKFSPNGKYILAAT 235
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAG---CVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
+ D KGK Y G C+ I+S S D + + +K+
Sbjct: 236 LDNTLKLWDYS-KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
Query: 309 LLRK 312
+++K
Sbjct: 295 IVQK 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,470,499
Number of Sequences: 62578
Number of extensions: 469980
Number of successful extensions: 1380
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1236
Number of HSP's gapped (non-prelim): 115
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)