Your job contains 1 sequence.
>psy8152
MTLADDYNIYIGSSTGAFKGVNLSKDKCIIKNIQNVKYITNKASVLALNWGNVEESELLI
AYSGQKIKIYDTDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYKTEPDQ
WTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPD
EFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITT
TNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFR
VHDFHSKKLLRKDYMQSRLTSILVRSDFSLENETKKEEQEHSEEKGDSDEKYDPEHFEMN
QVTRENYAESKTNKNTSDYDDESDIEIVDEIDNDEDKQDESEEDGEEEGEEEASENEYYT
ETDEDEKENEEDDGESDGGRRRGS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8152
(444 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-060929-1138 - symbol:wdr74 "WD repeat domai... 492 5.4e-47 1
UNIPROTKB|E2R2B7 - symbol:WDR74 "Uncharacterized protein"... 460 1.3e-43 1
UNIPROTKB|I3LD53 - symbol:WDR74 "Uncharacterized protein"... 458 2.2e-43 1
UNIPROTKB|Q6RFH5 - symbol:WDR74 "WD repeat-containing pro... 451 1.2e-42 1
WB|WBGene00011538 - symbol:T06E6.1 species:6239 "Caenorha... 448 2.5e-42 1
UNIPROTKB|Q58D06 - symbol:WDR74 "WD repeat-containing pro... 445 5.2e-42 1
MGI|MGI:2147427 - symbol:Wdr74 "WD repeat domain 74" spec... 428 3.3e-40 1
RGD|1582881 - symbol:Wdr74 "WD repeat domain 74" species:... 411 2.1e-38 1
FB|FBgn0033059 - symbol:CG7845 species:7227 "Drosophila m... 408 4.3e-38 1
UNIPROTKB|E9PS41 - symbol:WDR74 "WD repeat-containing pro... 389 4.4e-36 1
DICTYBASE|DDB_G0290555 - symbol:DDB_G0290555 "WD40 repeat... 230 2.6e-17 2
TAIR|locus:2013678 - symbol:AT1G29320 "AT1G29320" species... 228 1.4e-16 1
CGD|CAL0005449 - symbol:NSA1 species:5476 "Candida albica... 126 2.0e-08 2
UNIPROTKB|Q5A2T0 - symbol:NSA1 "Ribosome biogenesis prote... 126 2.0e-08 2
UNIPROTKB|Q2HJH6 - symbol:SNRNP40 "U5 small nuclear ribon... 130 1.3e-05 1
MGI|MGI:1913835 - symbol:Snrnp40 "small nuclear ribonucle... 128 2.2e-05 1
UNIPROTKB|F1MLP7 - symbol:SNRNP40 "U5 small nuclear ribon... 127 2.8e-05 1
UNIPROTKB|F1SVA6 - symbol:SNRNP40 "Uncharacterized protei... 127 2.8e-05 1
POMBASE|SPBC83.15 - symbol:SPBC83.15 "ribosome biogenesis... 120 3.0e-05 2
UNIPROTKB|F1NUK8 - symbol:SNRNP40 "Uncharacterized protei... 126 4.1e-05 1
UNIPROTKB|Q96DI7 - symbol:SNRNP40 "U5 small nuclear ribon... 125 4.6e-05 1
UNIPROTKB|F1NIY8 - symbol:F1NIY8 "Uncharacterized protein... 122 0.00010 1
UNIPROTKB|F1SQR9 - symbol:NEDD1 "Uncharacterized protein"... 95 0.00013 3
MGI|MGI:97293 - symbol:Nedd1 "neural precursor cell expre... 103 0.00015 2
ZFIN|ZDB-GENE-040426-978 - symbol:snrnp40 "small nuclear ... 120 0.00016 1
UNIPROTKB|G3V3F1 - symbol:NEDD1 "Neural cell expressed, d... 102 0.00019 2
UNIPROTKB|E2R5C6 - symbol:NEDD1 "Uncharacterized protein"... 101 0.00020 3
RGD|1307750 - symbol:Nedd1 "neural precursor cell express... 100 0.00031 2
CGD|CAL0005992 - symbol:orf19.3581 species:5476 "Candida ... 116 0.00066 1
UNIPROTKB|Q8NHV4 - symbol:NEDD1 "Protein NEDD1" species:9... 96 0.00084 2
>ZFIN|ZDB-GENE-060929-1138 [details] [associations]
symbol:wdr74 "WD repeat domain 74" species:7955
"Danio rerio" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 SMART:SM00320
ZFIN:ZDB-GENE-060929-1138 Gene3D:2.130.10.10 SUPFAM:SSF50978
eggNOG:NOG329513 KO:K14841 CTD:54663 HOVERGEN:HBG052672
OrthoDB:EOG43XV3Z HOGENOM:HOG000006658 EMBL:BC124328
IPI:IPI00802428 RefSeq:NP_001070031.1 UniGene:Dr.76164
ProteinModelPortal:Q08C95 STRING:Q08C95 PRIDE:Q08C95 GeneID:558996
KEGG:dre:558996 InParanoid:Q08C95 NextBio:20882731
ArrayExpress:Q08C95 Bgee:Q08C95 Uniprot:Q08C95
Length = 375
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 118/323 (36%), Positives = 177/323 (54%)
Query: 8 NIYIGSSTGAFKGVNLSKDKCIIKNIQNVKYITNKASVLALNWGNVEESELLIAYSGQKI 67
+I++GS TG KGV+L K + N + ++ V + WG+ ESELL+ +
Sbjct: 9 SIWLGSETGILKGVSLRKKQAF--NFCEMSCLSRDQEVCVMAWGDPYESELLLGSVNGTV 66
Query: 68 KIYDTDFKNFNTNTDVSF-GEGDIVGVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNV 126
K + TD F + +G G++ D ++T V+SG +K+W+ + D NV
Sbjct: 67 KTFSTDKGIFTATKECGDPSQGKFTGLAVTDSSMITCVESGLLKVWK-EGSTDT-VEVNV 124
Query: 127 GPQLECMKHNKHS-NIIATGGKENDLKLWDLNTT-KNIFSAKNVSHRVLVYSVKPDEFDL 184
G + M+ N+ + +ATGGKEN LK+WDL K IF+AKNV+H D ++
Sbjct: 125 GKDICKMRQNQSQRHHVATGGKENPLKVWDLEKPDKPIFTAKNVAH---------DWLEM 175
Query: 185 RRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQS 244
R PVWV ISF+ +SDK+ C+ VRVYDP T QRRPVL+ D + L+ ++
Sbjct: 176 RVPVWVRDISFIADSDKIVTCTGHHKVRVYDPS-TPQRRPVLEADFGEYPLTALSLPASQ 234
Query: 245 HYVIVGSTTGDMMAVDLR-GKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVHD 303
V+VG+T G++ +DLR G + C+K G AG V+ + C + L+ S LDR RVH
Sbjct: 235 DAVVVGNTHGELAILDLRKGLVRGCFK--GLAGAVRGLQCHPSLPLVASCGLDRFLRVHS 292
Query: 304 FHSKKLLRKDYMQSRLTSILVRS 326
+ L K Y++SRL +L+ S
Sbjct: 293 LEDRSLQHKVYLKSRLNCVLLSS 315
>UNIPROTKB|E2R2B7 [details] [associations]
symbol:WDR74 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0001825 "blastocyst
formation" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 SMART:SM00320 GO:GO:0005730
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0016070 GO:GO:0001825
KO:K14841 GeneTree:ENSGT00390000015119 CTD:54663 OMA:DLEQTQG
EMBL:AAEX03011662 RefSeq:XP_540899.2 Ensembl:ENSCAFT00000024618
GeneID:483778 KEGG:cfa:483778 NextBio:20858130 Uniprot:E2R2B7
Length = 383
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 111/323 (34%), Positives = 176/323 (54%)
Query: 8 NIYIGSSTGAFKGVNLSKDKCIIKNIQNVKYITNKASVLALNWGNVEESELLIAYSGQKI 67
++++G+ TG KGVNL + + N + +V AL WG E+++L+ + + +
Sbjct: 11 HVWVGTETGILKGVNLQRKQAA--NFTAAGQPRREEAVSALCWGAGGETQILVGCADRTV 68
Query: 68 KIYDTDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRY---KTEPDQWTNF 124
+ + T+ F GEG G+++ D ++T V SG V++WR + D
Sbjct: 69 RFFSTEEGRFQGQKHCPGGEGTFRGLAQVDSTLITCVDSGIVRVWRENDKEASSDPLLEL 128
Query: 125 NVGPQLECMKHNK-HSNIIATGGKENDLKLWDLNTTKN-IFSAKNVSHRVLVYSVKPDEF 182
+VGP + M+ + H +++ATGGKEN LK+WDL ++ +F AKNV + D
Sbjct: 129 SVGPGVCRMRQDPAHPHMVATGGKENALKVWDLQGSEEPVFRAKNVRN---------DWL 179
Query: 183 DLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTN 242
DLR P+W I FLP S K+ C+ VRVYDP + QRRPVL+V + L +T T
Sbjct: 180 DLRVPIWDQDIQFLPESQKLVTCTGYHQVRVYDPA-SPQRRPVLEVTYGEYPLMAMTLTP 238
Query: 243 QSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVH 302
+ VIVG+T G + +DLR +G+ KG AG V+ + C ++ L+ S LDR R+H
Sbjct: 239 GGNSVIVGNTHGQLAEIDLR-QGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRIH 297
Query: 303 DFHSKK-LLRKDYMQSRLTSILV 324
+ + L K Y++S+L +L+
Sbjct: 298 RIQNPRGLEHKVYLKSQLNCLLL 320
>UNIPROTKB|I3LD53 [details] [associations]
symbol:WDR74 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0001825 "blastocyst
formation" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 SMART:SM00320 GO:GO:0005730
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0016070 GO:GO:0001825
KO:K14841 GeneTree:ENSGT00390000015119 CTD:54663 OMA:DLEQTQG
EMBL:FP340373 RefSeq:NP_001230324.1 UniGene:Ssc.6568
Ensembl:ENSSSCT00000027556 GeneID:100627951 KEGG:ssc:100627951
Uniprot:I3LD53
Length = 385
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 109/323 (33%), Positives = 177/323 (54%)
Query: 8 NIYIGSSTGAFKGVNLSKDKCIIKNIQNVKYITNKASVLALNWGNVEESELLIAYSGQKI 67
++++G+ TG KGVNL + + + N + +V AL WG E+++L+ + + +
Sbjct: 10 HVWVGTDTGILKGVNLQRKQAV--NYTAAGQPQREEAVSALCWGAGGETQILVGCADRTV 67
Query: 68 KIYDTDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWR---YKTEPDQWTNF 124
K++ T+ F GEG G+++ D ++T V+SG +++W + D
Sbjct: 68 KLFSTEEGRFQGQRHCPGGEGTFRGLAQVDGTLITCVESGILRVWHDNDKEASSDPLLEL 127
Query: 125 NVGPQLECMKHN-KHSNIIATGGKENDLKLWDLNTTKN-IFSAKNVSHRVLVYSVKPDEF 182
VGP + M+ + +++ATGGKEN LK+WDL ++ +F AKNV + D
Sbjct: 128 RVGPGVCRMRQDPSRPHVVATGGKENALKVWDLQGSEEPVFKAKNVRN---------DWL 178
Query: 183 DLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTN 242
DLR P+W I FLP S K+ C+ VRVYDP + QRRPVL+ + L+ +T T
Sbjct: 179 DLRVPIWDQDIQFLPESQKLVTCTGYHQVRVYDPA-SPQRRPVLEATYGEYPLTAMTLTP 237
Query: 243 QSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVH 302
+ + VIVG+T G + +DLR +G+ KG AG V+ + C ++ L+ S LDR RVH
Sbjct: 238 EGNSVIVGNTHGQLAEIDLR-QGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRVH 296
Query: 303 DFHSKK-LLRKDYMQSRLTSILV 324
+ + L K Y++S+L +L+
Sbjct: 297 RIRNPRGLEHKVYLKSQLNCLLL 319
>UNIPROTKB|Q6RFH5 [details] [associations]
symbol:WDR74 "WD repeat-containing protein 74" species:9606
"Homo sapiens" [GO:0001825 "blastocyst formation" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005730 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
GO:GO:0016070 GO:GO:0001825 eggNOG:NOG329513 KO:K14841 CTD:54663
HOVERGEN:HBG052672 OMA:DLEQTQG EMBL:AY500828 EMBL:AK001301
EMBL:AK025383 EMBL:AK292330 EMBL:BC006351 IPI:IPI00018192
IPI:IPI00165237 RefSeq:NP_060563.2 UniGene:Hs.654620
ProteinModelPortal:Q6RFH5 SMR:Q6RFH5 IntAct:Q6RFH5
MINT:MINT-1433008 STRING:Q6RFH5 PhosphoSite:Q6RFH5 DMDM:55976441
SWISS-2DPAGE:Q6RFH5 PaxDb:Q6RFH5 PRIDE:Q6RFH5 DNASU:54663
Ensembl:ENST00000278856 Ensembl:ENST00000311713
Ensembl:ENST00000525239 Ensembl:ENST00000529106 GeneID:54663
KEGG:hsa:54663 UCSC:uc001nvl.2 UCSC:uc001nvm.2
GeneCards:GC11M062600 HGNC:HGNC:25529 HPA:HPA037795
neXtProt:NX_Q6RFH5 PharmGKB:PA142670578 HOGENOM:HOG000006658
InParanoid:Q6RFH5 PhylomeDB:Q6RFH5 ChiTaRS:WDR74 GenomeRNAi:54663
NextBio:57206 ArrayExpress:Q6RFH5 Bgee:Q6RFH5 CleanEx:HS_WDR74
Genevestigator:Q6RFH5 GermOnline:ENSG00000133316 Uniprot:Q6RFH5
Length = 385
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 111/323 (34%), Positives = 175/323 (54%)
Query: 8 NIYIGSSTGAFKGVNLSKDKCIIKNIQNVKYITNKASVLALNWGNVEESELLIAYSGQKI 67
++++G+ TG KGVNL + + N + +V AL WG E+++L+ + + +
Sbjct: 10 HVWVGTETGILKGVNLQRKQAA--NFTAGGQPRREEAVSALCWGTGGETQMLVGCADRTV 67
Query: 68 KIYDTDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYK---TEPDQWTNF 124
K + T+ F GEG G+++ D ++T V SG +++W K T D
Sbjct: 68 KHFSTEDGIFQGQRHCPGGEGMFRGLAQADGTLITCVDSGILRVWHDKDKDTSSDPLLEL 127
Query: 125 NVGPQLECMKHNK-HSNIIATGGKENDLKLWDLNTTKN-IFSAKNVSHRVLVYSVKPDEF 182
VGP + M+ + H +++ATGGKEN LK+WDL ++ +F AKNV + D
Sbjct: 128 RVGPGVCRMRQDPAHPHVVATGGKENALKIWDLQGSEEPVFRAKNVRN---------DWL 178
Query: 183 DLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTN 242
DLR P+W I FLP S K+ C+ VRVYDP + QRRPVL+ + L+ +T T
Sbjct: 179 DLRVPIWDQDIQFLPGSQKLVTCTGYHQVRVYDPA-SPQRRPVLETTYGEYPLTAMTLTP 237
Query: 243 QSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVH 302
+ VIVG+T G + +DLR +G+ KG AG V+ + C ++ L+ S LDR R+H
Sbjct: 238 GGNSVIVGNTHGQLAEIDLR-QGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRIH 296
Query: 303 DFHSKK-LLRKDYMQSRLTSILV 324
+ + L K Y++S+L +L+
Sbjct: 297 RIQNPRGLEHKVYLKSQLNCLLL 319
>WB|WBGene00011538 [details] [associations]
symbol:T06E6.1 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
SMART:SM00320 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0040035 EMBL:Z81117
eggNOG:NOG329513 KO:K14841 GeneTree:ENSGT00390000015119 PIR:T24597
RefSeq:NP_506824.1 ProteinModelPortal:O45757 STRING:O45757
PaxDb:O45757 EnsemblMetazoa:T06E6.1 GeneID:180039
KEGG:cel:CELE_T06E6.1 UCSC:T06E6.1 CTD:180039 WormBase:T06E6.1
HOGENOM:HOG000017817 InParanoid:O45757 OMA:ATKLHEM NextBio:907848
Uniprot:O45757
Length = 431
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 101/323 (31%), Positives = 176/323 (54%)
Query: 10 YIGSSTGAFKGVNLSKDKCIIKNIQNVKYITNKAS-VLALNWGNVEESELLIAYSGQKIK 68
Y+G++TGA KG L ++ +N+ +K + K+ + ++ W + +++E+LIA + ++
Sbjct: 4 YVGATTGALKGAILKENT--FQNLNEIKSLDPKSDEITSMIWNDEQQTEILIARVNRDLQ 61
Query: 69 IYDTDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYKTEP-DQWTNFNVG 127
+ + + V+ G G I G+ + DE I+T V+SG++++W K+E +W G
Sbjct: 62 LLGIEENELVSILTVTGGTGPIKGLHKADEKIVTCVESGELQIWNDKSEILSEW---KTG 118
Query: 128 PQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRP 187
P + M+ + I TGG +N LK W+L T + +SAKNV PD L P
Sbjct: 119 PGVAVMRGSTEKPEIVTGGMKNLLKTWNLETGQQTWSAKNVP---------PDMLGLEIP 169
Query: 188 VWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYV 247
+ + F+P + + +K +R+YDP+ QRRPV K+ + + C + T +++ +
Sbjct: 170 IMITDARFIPGQNTILEATKLHEMRLYDPR--AQRRPVKKIPFMENPIMCTSLTYKTNQI 227
Query: 248 IVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVHDFHSK 307
+ ++ G+M DLR K P K+KG AG ++ I L SV +DR RVHD S+
Sbjct: 228 LAANSIGEMGLFDLRSKVHPMCKFKGQAGSIRSITAHPTLPLAASVGIDRFLRVHDLQSR 287
Query: 308 KLLRKDYMQSRLTSILVRSDFSL 330
KL+ K Y ++RL +L+R + S+
Sbjct: 288 KLIHKIYCKTRLNRVLLRDNLSI 310
>UNIPROTKB|Q58D06 [details] [associations]
symbol:WDR74 "WD repeat-containing protein 74" species:9913
"Bos taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0001825 "blastocyst formation"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0005730 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0016070 GO:GO:0001825 eggNOG:NOG329513
KO:K14841 GeneTree:ENSGT00390000015119 EMBL:BT021738 EMBL:BT021770
EMBL:BT021791 EMBL:BT021906 EMBL:BT025345 EMBL:BT025445
EMBL:BT026287 EMBL:BT029805 EMBL:BC114802 IPI:IPI00704403
RefSeq:NP_001014854.1 UniGene:Bt.4583 ProteinModelPortal:Q58D06
STRING:Q58D06 PRIDE:Q58D06 Ensembl:ENSBTAT00000012489 GeneID:505875
KEGG:bta:505875 CTD:54663 HOVERGEN:HBG052672 InParanoid:Q58D06
OMA:DLEQTQG OrthoDB:EOG43XV3Z NextBio:20867353 ArrayExpress:Q58D06
Uniprot:Q58D06
Length = 385
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 111/323 (34%), Positives = 174/323 (53%)
Query: 8 NIYIGSSTGAFKGVNLSKDKCIIKNIQNVKYITNKASVLALNWGNVEESELLIAYSGQKI 67
++++G+ TG KGVNL + + N + +V AL WG E+++L+ + +
Sbjct: 10 HVWVGTDTGILKGVNLQRKQAA--NFTASGQPRREEAVSALCWGAGGETQILVGCADGTV 67
Query: 68 KIYDTDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYKTEP---DQWTNF 124
K + T+ F GEG G+++ D ++T V SG +++W K + D
Sbjct: 68 KHFSTEEGRFQGQRQCPGGEGTFRGLAQVDGTLITCVDSGILRVWTDKDKEASSDPVLEL 127
Query: 125 NVGPQLECMKHNK-HSNIIATGGKENDLKLWDLNTTKN-IFSAKNVSHRVLVYSVKPDEF 182
VGP + M+ + +I+ATGGKEN LK+WDL ++ +F AKNV + D
Sbjct: 128 RVGPGVCRMRQDPARPHIVATGGKENALKVWDLQGSEEPLFRAKNVRN---------DWL 178
Query: 183 DLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTN 242
DLR PVW I FLP S K+ C+ VRVYDP + QRRPVL+ + L+ +T T
Sbjct: 179 DLRVPVWDQDIQFLPESQKLVTCTGYHQVRVYDPA-SPQRRPVLEATYGEYPLTAVTLTP 237
Query: 243 QSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVH 302
+ + VIVG+T G + +DLR +G+ KG AG V+ + C ++ L+ S LDR R+H
Sbjct: 238 EGNSVIVGNTHGQLAEIDLR-QGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRIH 296
Query: 303 DFHSKK-LLRKDYMQSRLTSILV 324
+ + L K Y++S+L +L+
Sbjct: 297 RIRNPRGLEHKVYLKSQLNCLLL 319
>MGI|MGI:2147427 [details] [associations]
symbol:Wdr74 "WD repeat domain 74" species:10090 "Mus
musculus" [GO:0001825 "blastocyst formation" evidence=IMP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0016070
"RNA metabolic process" evidence=IMP] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 MGI:MGI:2147427 GO:GO:0005634
GO:GO:0005730 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
GO:GO:0016070 GO:GO:0001825 eggNOG:NOG329513 KO:K14841
GeneTree:ENSGT00390000015119 CTD:54663 HOVERGEN:HBG052672
OMA:DLEQTQG OrthoDB:EOG43XV3Z HOGENOM:HOG000006658 EMBL:BC019968
EMBL:AK077521 IPI:IPI00122120 RefSeq:NP_598900.1 UniGene:Mm.29627
ProteinModelPortal:Q8VCG3 SMR:Q8VCG3 STRING:Q8VCG3
PhosphoSite:Q8VCG3 PaxDb:Q8VCG3 PRIDE:Q8VCG3
Ensembl:ENSMUST00000049424 GeneID:107071 KEGG:mmu:107071
UCSC:uc008gmm.1 InParanoid:Q8VCG3 NextBio:358564 Bgee:Q8VCG3
CleanEx:MM_WDR74 Genevestigator:Q8VCG3
GermOnline:ENSMUSG00000042729 Uniprot:Q8VCG3
Length = 384
Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
Identities = 104/323 (32%), Positives = 174/323 (53%)
Query: 8 NIYIGSSTGAFKGVNLSKDKCIIKNIQNVKYITNKASVLALNWGNVEESELLIAYSGQKI 67
++++G+ TG KGVNL + N + +V AL WG E+++L+ + + +
Sbjct: 10 HVWVGTETGILKGVNLQRKHAA--NFTPSGQPRREEAVNALCWGTGGETQILVGCADRTV 67
Query: 68 KIYDTDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLW---RYKTEPDQWTNF 124
+ ++ + F + GEG G+++ D ++T V SG +++W + D
Sbjct: 68 RYFNAEEGTFLSQRYCPGGEGTFRGLAQADGTLITCVDSGILRVWCENDKEASSDPLLEL 127
Query: 125 NVGPQLECMKHNK-HSNIIATGGKENDLKLWDLNTTKN-IFSAKNVSHRVLVYSVKPDEF 182
VGP + M+ + H++++AT GKEN LK+WDL ++ +F AKNV + D
Sbjct: 128 KVGPGVCRMRQDPTHTHVVATCGKENALKVWDLQGSEEPVFRAKNVRN---------DWL 178
Query: 183 DLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTN 242
DLR P+W FLP S K+ C+ VRVYDP ++ QRRPVL+ + L+ +T T
Sbjct: 179 DLRVPIWDQDTQFLPGSQKLVTCTGYHQVRVYDP-VSPQRRPVLEATYGEYPLTAMTLTP 237
Query: 243 QSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVH 302
+ + VIVG+T G + +D R +G+ KG AG V+ + C ++ L+ S LDR R+H
Sbjct: 238 EGNSVIVGNTHGQLAEIDFR-QGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRIH 296
Query: 303 DFHSKK-LLRKDYMQSRLTSILV 324
+ + L K Y++S+L +L+
Sbjct: 297 RIRNPRGLEHKVYLKSQLNCLLL 319
>RGD|1582881 [details] [associations]
symbol:Wdr74 "WD repeat domain 74" species:10116 "Rattus
norvegicus" [GO:0001825 "blastocyst formation" evidence=IEA;ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016070 "RNA metabolic
process" evidence=IEA;ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 SMART:SM00320 RGD:1582881
Gene3D:2.130.10.10 SUPFAM:SSF50978 EMBL:CH473953 KO:K14841
GeneTree:ENSGT00390000015119 CTD:54663 IPI:IPI00870610
RefSeq:NP_001103039.1 UniGene:Rn.14606 Ensembl:ENSRNOT00000066823
GeneID:690229 KEGG:rno:690229 UCSC:RGD:1582881 NextBio:740452
Uniprot:D3ZMQ7
Length = 366
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 102/316 (32%), Positives = 169/316 (53%)
Query: 8 NIYIGSSTGAFKGVNLSKDKCIIKNIQNVKYITNKASVLALNWGNVEESELLIAYSGQKI 67
++++G+ TG KGVNL + + N + +V AL WG E+++L+ + + +
Sbjct: 10 HVWVGTETGILKGVNLQRK--LAANFTPSGQPRREEAVNALCWGTGGETQILVGCADRTV 67
Query: 68 KIYDTDFKNFNTNTDVSFGEGDIVGVSRYDE-CILTAVKSGDVKLW---RYKTEPDQWTN 123
+ ++ + F + GEG G+++ D+ ++T V SG +++W + D
Sbjct: 68 RHFNAEEGTFQSQRYCPGGEGTFRGLAQADDGTLITCVDSGILRVWCENDKEASSDPLLE 127
Query: 124 FNVGPQLECMKHNK-HSNIIATGGKENDLKLWDLNTTKN-IFSAKNVSHRVLVYSVKPDE 181
VGP + M+ + H++++AT GKEN LK+WDL ++ +F AKNV + D
Sbjct: 128 LKVGPGVCRMRQDPTHTHVVATCGKENALKVWDLQGSEEPVFRAKNVRN---------DW 178
Query: 182 FDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTT 241
DLR P+W I FLP S K+ C+ VR+YDP + QRRPVL+ + L+ +T T
Sbjct: 179 LDLRVPIWDQDIQFLPGSQKLVTCTGYHQVRIYDPA-SPQRRPVLEATYGEYPLTAMTLT 237
Query: 242 NQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRV 301
+ + VIVG+T G + +D R +G+ KG AG V+ + C ++ L+ S LDR R+
Sbjct: 238 PEGNSVIVGNTHGQLAEIDFR-QGRLLGCLKGLAGSVRGLQCHPSKPLLASCGLDRVLRI 296
Query: 302 HDFHSKK-LLRKDYMQ 316
H + + L KD Q
Sbjct: 297 HRIRNPRGLEHKDEPQ 312
>FB|FBgn0033059 [details] [associations]
symbol:CG7845 species:7227 "Drosophila melanogaster"
[GO:0046716 "muscle cell homeostasis" evidence=IGI;IMP]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 SMART:SM00320 EMBL:AE013599 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0046716 eggNOG:NOG329513 KO:K14841
GeneTree:ENSGT00390000015119 EMBL:AY052020 RefSeq:NP_001188867.1
RefSeq:NP_610200.1 UniGene:Dm.4409 SMR:Q7K4B2 IntAct:Q7K4B2
STRING:Q7K4B2 EnsemblMetazoa:FBtr0086023 EnsemblMetazoa:FBtr0302508
GeneID:35536 KEGG:dme:Dmel_CG7845 UCSC:CG7845-RA
FlyBase:FBgn0033059 InParanoid:Q7K4B2 OMA:ASEEHGM OrthoDB:EOG4KPRSV
GenomeRNAi:35536 NextBio:793905 Uniprot:Q7K4B2
Length = 419
Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
Identities = 98/326 (30%), Positives = 176/326 (53%)
Query: 7 YNIYIGSSTGAFKGVNLSKDKCII--KNIQNVKYITNKASVLALNWGNVEESELLIAYSG 64
+ +Y+G+ TG+FK + + +K N+ ++ + + V +L +GN +++E+L+ +
Sbjct: 17 HELYVGTHTGSFKHLVPASEKTPYGQSNLSDLCALDKDSRVTSLAFGNDDQTEILLGRAK 76
Query: 65 QKIKIYDTDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYKTEPD-QWTN 123
++I+ K + NT VSF IVG++RY++ ++ + +G+++ + + +
Sbjct: 77 DAVEIHSFTEKGHSRNT-VSFNAAPIVGLARYNDKLIAGIGNGEIQSLELEANDESEPVV 135
Query: 124 FNVGPQLECMKHNKH-SNIIATGGKE--NDLKLWDLNTT-KNIFSAKNVSHRVLVYSVKP 179
G Q++ ++ +I+ATGGKE N+LK++DLN K IF++KN+ +
Sbjct: 136 IATGDQMDHLRQCAQVKSIVATGGKERQNNLKVYDLNADGKQIFTSKNLPN--------- 186
Query: 180 DEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCIT 239
D L PVW + I F+ +A CS+ GYVR+YD + QRRPV + +S T
Sbjct: 187 DYLQLEVPVWDSDIGFVDGPSVLATCSRTGYVRIYDTR--KQRRPVACFASEEHGMSFTT 244
Query: 240 TTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHF 299
+ +++ G+T G + A D R + YKGF G + D+ + S SLDR+
Sbjct: 245 LVAKGNFIYTGTTMGALKAFDTRRMKTHVHTYKGFTGGISDLHLDATGRFLSSASLDRYV 304
Query: 300 RVHDFHSKKLLRKDYMQSRLTSILVR 325
R+HD + LL + Y++S+ T IL+R
Sbjct: 305 RIHDSETTVLLYQCYVKSKATKILIR 330
>UNIPROTKB|E9PS41 [details] [associations]
symbol:WDR74 "WD repeat-containing protein 74" species:9606
"Homo sapiens" [GO:0001825 "blastocyst formation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 SMART:SM00320 GO:GO:0005634
Gene3D:2.130.10.10 SUPFAM:SSF50978 EMBL:AP001160 GO:GO:0016070
GO:GO:0001825 HGNC:HGNC:25529 ChiTaRS:WDR74 IPI:IPI00984341
ProteinModelPortal:E9PS41 SMR:E9PS41 Ensembl:ENST00000525752
ArrayExpress:E9PS41 Bgee:E9PS41 Uniprot:E9PS41
Length = 328
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 96/273 (35%), Positives = 149/273 (54%)
Query: 58 LLIAYSGQKIKIYDTDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYK-- 115
+L+ + + +K + T+ F GEG G+++ D ++T V SG +++W K
Sbjct: 1 MLVGCADRTVKHFSTEDGIFQGQRHCPGGEGMFRGLAQADGTLITCVDSGILRVWHDKDK 60
Query: 116 -TEPDQWTNFNVGPQLECMKHNK-HSNIIATGGKENDLKLWDLNTTKN-IFSAKNVSHRV 172
T D VGP + M+ + H +++ATGGKEN LK+WDL ++ +F AKNV +
Sbjct: 61 DTSSDPLLELRVGPGVCRMRQDPAHPHVVATGGKENALKIWDLQGSEEPVFRAKNVRN-- 118
Query: 173 LVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPD 232
D DLR P+W I FLP S K+ C+ VRVYDP + QRRPVL+ +
Sbjct: 119 -------DWLDLRVPIWDQDIQFLPGSQKLVTCTGYHQVRVYDPA-SPQRRPVLETTYGE 170
Query: 233 VALSCITTTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILS 292
L+ +T T + VIVG+T G + +DLR +G+ KG AG V+ + C ++ L+ S
Sbjct: 171 YPLTAMTLTPGGNSVIVGNTHGQLAEIDLR-QGRLLGCLKGLAGSVRGLQCHPSKPLLAS 229
Query: 293 VSLDRHFRVHDFHSKK-LLRKDYMQSRLTSILV 324
LDR R+H + + L K Y++S+L +L+
Sbjct: 230 CGLDRVLRIHRIQNPRGLEHKVYLKSQLNCLLL 262
>DICTYBASE|DDB_G0290555 [details] [associations]
symbol:DDB_G0290555 "WD40 repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0005615 "extracellular
space" evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 dictyBase:DDB_G0290555 GO:GO:0005615
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
EMBL:AAFI02000164 eggNOG:NOG329513 KO:K14841 RefSeq:XP_635648.1
ProteinModelPortal:Q54FW9 EnsemblProtists:DDB0304570 GeneID:8627720
KEGG:ddi:DDB_G0290555 InParanoid:Q54FW9 OMA:KIYNIHK Uniprot:Q54FW9
Length = 508
Score = 230 (86.0 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 65/210 (30%), Positives = 101/210 (48%)
Query: 117 EPDQWTNF--NVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLV 174
EP +F NV L N ++ A GGK+ +L +WDL +SAK
Sbjct: 149 EPVNTQSFSLNVATNLSGFAMNPSNDKFAFGGKDVNLTIWDLEKQVKTYSAK-------- 200
Query: 175 YSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVA 234
K D +L+ PV +N + ++ N DK+ + S ++ YD + T R L V
Sbjct: 201 --FKHDFLNLQEPVSINVVKYM-NDDKILIGS-DFRIKAYDLRSKTNRSSFLDVSFSKHP 256
Query: 235 LSCITTTNQS-HYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSV 293
+ I TNQ HY + G + D+R + +K AG VKDIA L+ +V
Sbjct: 257 IQSIQYTNQKEHYFYASDSIGKVFCYDVR-TSRQVGSFKDSAGSVKDIAIHPTLPLLATV 315
Query: 294 SLDRHFRVHDFHSKKLLRKDYMQSRLTSIL 323
LDRH RV++ ++K+L K +++ RL+ +L
Sbjct: 316 GLDRHLRVYNLDNRKMLHKIFLKQRLSCVL 345
Score = 43 (20.2 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 326 SDFSLXXXXXXXXXXXXXXXGDSDEKYDPEHFEMNQVTRENYAESKTNKNTS 377
SDF L GDSD+ D + E + R+ A+S N +
Sbjct: 424 SDFDLGNSDDDNISVKKENKGDSDDS-DDDSDEDEKPKRKTPAKSNLRNNNN 474
>TAIR|locus:2013678 [details] [associations]
symbol:AT1G29320 "AT1G29320" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0080008 "Cul4-RING ubiquitin
ligase complex" evidence=ISS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50294 SMART:SM00320
EMBL:CP002684 GenomeReviews:CT485782_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0080008 UniGene:At.15796 UniGene:At.40762
eggNOG:NOG329513 KO:K14841 EMBL:BT026364 IPI:IPI00543633
RefSeq:NP_174226.1 ProteinModelPortal:Q0V856 SMR:Q0V856
PaxDb:Q0V856 PRIDE:Q0V856 EnsemblPlants:AT1G29320.1 GeneID:839806
KEGG:ath:AT1G29320 TAIR:At1g29320 HOGENOM:HOG000029898
InParanoid:Q0V856 OMA:SHQVRLY PhylomeDB:Q0V856
ProtClustDB:CLSN2679695 Genevestigator:Q0V856 Uniprot:Q0V856
Length = 468
Score = 228 (85.3 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 70/244 (28%), Positives = 110/244 (45%)
Query: 100 ILTAVKSGDVKLWRYK--------TE---PDQWTNFNVGPQLECMKHNKHSNIIATGGKE 148
+LT K GDV L K T+ P W G ++ K + N GGK
Sbjct: 126 LLTCTKKGDVSLRSVKFPDAHGNSTDDASPKTWKACGSG-EILVGKVDGSENFSLFGGKR 184
Query: 149 NDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSD--KVAVCS 206
+ +WDL I+SAK + + P W +FL D K +
Sbjct: 185 VEANIWDLEQCTKIWSAK---------CPPKNNLGIFTPTWFTSATFLSKDDHRKFVTGT 235
Query: 207 KQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGSTTGDMMAVDLRGKGK 266
K VR+YD I+TQRRPVL D + A++ I H + VG+ + D+ + D+R GK
Sbjct: 236 KSHQVRLYD--ISTQRRPVLSFDFRETAITSIAEDPDGHTIYVGNASADLASFDIR-TGK 292
Query: 267 PCYKYKG-FAGCVKDIACPLNENLILSVSLDRHFRVHDFHSKKLLRKDYMQSRLTSILVR 325
+ G +G ++ + +I S LDR+ RV+D +++L+ +++ LT ++
Sbjct: 293 LLGSFLGKCSGSIRSVVRHPQHQVIASCGLDRYLRVYDVKTRQLISAVFLKQHLTGLVFD 352
Query: 326 SDFS 329
S FS
Sbjct: 353 SGFS 356
>CGD|CAL0005449 [details] [associations]
symbol:NSA1 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=IEA] InterPro:IPR017986 InterPro:IPR015943 CGD:CAL0005449
GO:GO:0005730 Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0006364
EMBL:AACQ01000076 EMBL:AACQ01000075 RefSeq:XP_715968.1
RefSeq:XP_716026.1 GeneID:3642313 GeneID:3642381
KEGG:cal:CaO19.2185 KEGG:cal:CaO19.9731 eggNOG:NOG329513 KO:K14841
Uniprot:Q5A2T0
Length = 406
Score = 126 (49.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 62/258 (24%), Positives = 107/258 (41%)
Query: 23 LSKDKCIIKNIQNVK-----YITNKASVL--ALNWGNVEESELLIAYSGQKIKIYDTDFK 75
+S D C+++ +VK +++ L A G V EL S +K K+
Sbjct: 33 ISIDNCLLEPSSSVKSRIIHFLSFNYQYLIGARLGGQVSVYELSDEESEEKFKL----LH 88
Query: 76 NFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQ---LEC 132
NF D ++ V D IL A +S V L D V P+ +
Sbjct: 89 NFELPVDAQDKPVALLRVEILDS-ILVAFESSKVFLIHINDSFDFKPLELVLPEYKPISA 147
Query: 133 MKHNKHS-NIIATGGKENDLKLWDL---NTTKNIFSAKNVSHRV---LVY---SVKPDEF 182
N + NI+A GGKE+DL++ L N +F N + +++ +V+ D
Sbjct: 148 FAINPQAENIVALGGKEHDLQILQLFNKNINSTVFKKNNYENEFKPQIIFKAKNVRNDHL 207
Query: 183 DLRRPVWVNGISFLPNSD--KVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITT 240
+LR P+W+ I F + K+ ++ G +R+YD R+P + + + +T
Sbjct: 208 ELRVPIWITNILFAKAAKGYKLVTSTRYGQIRLYDT--AEGRKPRKDYKVTEKPIVTLTF 265
Query: 241 TNQSHYVIVGSTTGDMMA 258
N I+ + T ++A
Sbjct: 266 ANDEQTEIIVTDTHSLIA 283
Score = 73 (30.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 287 ENLILSVSLDRHFRVHDFHSKKLLRKDYMQSRLTSILVRSD 327
E ++ LDR+ RV D S+++L K Y+ ++++L+ D
Sbjct: 331 ERIVAFAGLDRYLRVFDLESREILAKVYLGVEVSALLILDD 371
>UNIPROTKB|Q5A2T0 [details] [associations]
symbol:NSA1 "Ribosome biogenesis protein NSA1"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR017986
InterPro:IPR015943 CGD:CAL0005449 GO:GO:0005730 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0006364 EMBL:AACQ01000076 EMBL:AACQ01000075
RefSeq:XP_715968.1 RefSeq:XP_716026.1 GeneID:3642313 GeneID:3642381
KEGG:cal:CaO19.2185 KEGG:cal:CaO19.9731 eggNOG:NOG329513 KO:K14841
Uniprot:Q5A2T0
Length = 406
Score = 126 (49.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 62/258 (24%), Positives = 107/258 (41%)
Query: 23 LSKDKCIIKNIQNVK-----YITNKASVL--ALNWGNVEESELLIAYSGQKIKIYDTDFK 75
+S D C+++ +VK +++ L A G V EL S +K K+
Sbjct: 33 ISIDNCLLEPSSSVKSRIIHFLSFNYQYLIGARLGGQVSVYELSDEESEEKFKL----LH 88
Query: 76 NFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQ---LEC 132
NF D ++ V D IL A +S V L D V P+ +
Sbjct: 89 NFELPVDAQDKPVALLRVEILDS-ILVAFESSKVFLIHINDSFDFKPLELVLPEYKPISA 147
Query: 133 MKHNKHS-NIIATGGKENDLKLWDL---NTTKNIFSAKNVSHRV---LVY---SVKPDEF 182
N + NI+A GGKE+DL++ L N +F N + +++ +V+ D
Sbjct: 148 FAINPQAENIVALGGKEHDLQILQLFNKNINSTVFKKNNYENEFKPQIIFKAKNVRNDHL 207
Query: 183 DLRRPVWVNGISFLPNSD--KVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITT 240
+LR P+W+ I F + K+ ++ G +R+YD R+P + + + +T
Sbjct: 208 ELRVPIWITNILFAKAAKGYKLVTSTRYGQIRLYDT--AEGRKPRKDYKVTEKPIVTLTF 265
Query: 241 TNQSHYVIVGSTTGDMMA 258
N I+ + T ++A
Sbjct: 266 ANDEQTEIIVTDTHSLIA 283
Score = 73 (30.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 287 ENLILSVSLDRHFRVHDFHSKKLLRKDYMQSRLTSILVRSD 327
E ++ LDR+ RV D S+++L K Y+ ++++L+ D
Sbjct: 331 ERIVAFAGLDRYLRVFDLESREILAKVYLGVEVSALLILDD 371
>UNIPROTKB|Q2HJH6 [details] [associations]
symbol:SNRNP40 "U5 small nuclear ribonucleoprotein 40 kDa
protein" species:9913 "Bos taurus" [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0006397 GO:GO:0005681
HOGENOM:HOG000091644 KO:K12857 EMBL:BC105383 IPI:IPI00687479
RefSeq:NP_001039847.1 UniGene:Bt.59135 ProteinModelPortal:Q2HJH6
STRING:Q2HJH6 PRIDE:Q2HJH6 GeneID:534645 KEGG:bta:534645 CTD:9410
HOVERGEN:HBG105197 InParanoid:Q2HJH6 OrthoDB:EOG4JM7Q0
NextBio:20876486 Uniprot:Q2HJH6
Length = 358
Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 62/262 (23%), Positives = 110/262 (41%)
Query: 41 NKASVLALNWGNVEESELLIAYSGQKIKIYDTD----FKNFNTNTDVSFGEGDIVGVSRY 96
+ +V+ L++ N + S L A + + + ++D++ K +T SF R
Sbjct: 109 HSGAVMELHY-NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHT--SF-VNSCYPARRG 164
Query: 97 DECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDL 156
+ + T G VKLW + + T F Q+ + N S+ I +GG +ND+K+WDL
Sbjct: 165 PQLVCTGSDDGTVKLWDIRKKAAIQT-FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDL 223
Query: 157 NTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDP 216
K ++ + + V S+ + L N + D K+ VR++
Sbjct: 224 RQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVW---DVRPFAPKERCVRIFQG 280
Query: 217 KITTQRRPVLKVD-IPDVALSCITTTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFA 275
+ + +L+ PD S I + +V V TT + YK G A
Sbjct: 281 NVHNFEKNLLRCSWSPDG--SKIAAGSADRFVYVWDTTSRRIL----------YKLPGHA 328
Query: 276 GCVKDIACPLNENLILSVSLDR 297
G + ++A +E +ILS S D+
Sbjct: 329 GSINEVAFHPDEPIILSASSDK 350
>MGI|MGI:1913835 [details] [associations]
symbol:Snrnp40 "small nuclear ribonucleoprotein 40 (U5)"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 MGI:MGI:1913835 GO:GO:0005737
GO:GO:0008380 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
GO:GO:0006397 GO:GO:0071013 HOGENOM:HOG000091644 KO:K12857
OMA:HAGSVNE GeneTree:ENSGT00690000101787 CTD:9410
HOVERGEN:HBG105197 OrthoDB:EOG4JM7Q0 EMBL:AK002371 EMBL:AK169605
EMBL:BC058365 IPI:IPI00461621 RefSeq:NP_079921.2 UniGene:Mm.423019
ProteinModelPortal:Q6PE01 SMR:Q6PE01 STRING:Q6PE01
PhosphoSite:Q6PE01 PaxDb:Q6PE01 PRIDE:Q6PE01
Ensembl:ENSMUST00000105994 GeneID:66585 KEGG:mmu:66585
UCSC:uc008uzf.1 InParanoid:Q6PE01 NextBio:322070 Bgee:Q6PE01
Genevestigator:Q6PE01 Uniprot:Q6PE01
Length = 358
Score = 128 (50.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 61/262 (23%), Positives = 110/262 (41%)
Query: 41 NKASVLALNWGNVEESELLIAYSGQKIKIYDTD----FKNFNTNTDVSFGEGDIVGVSRY 96
+ +V+ L++ N + S L A + + + ++D++ K +T SF R
Sbjct: 109 HSGAVMELHY-NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHT--SF-VNSCYPARRG 164
Query: 97 DECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDL 156
+ + T G VKLW + + T F Q+ + N S+ I +GG +ND+K+WDL
Sbjct: 165 PQLVCTGSDDGTVKLWDIRKKAAVQT-FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDL 223
Query: 157 NTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDP 216
K ++ + + V S+ + L N + D K+ V+++
Sbjct: 224 RQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVW---DVRPFAPKERCVKIFQG 280
Query: 217 KITTQRRPVLKVD-IPDVALSCITTTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFA 275
+ + +L+ PD S I + +V V TT + YK G A
Sbjct: 281 NVHNFEKNLLRCSWSPDG--SKIAAGSADRFVYVWDTTSRRVL----------YKLPGHA 328
Query: 276 GCVKDIACPLNENLILSVSLDR 297
G + ++A +E +ILS S D+
Sbjct: 329 GSINEVAFHPDEPIILSASSDK 350
>UNIPROTKB|F1MLP7 [details] [associations]
symbol:SNRNP40 "U5 small nuclear ribonucleoprotein 40 kDa
protein" species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005737 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071013
OMA:HAGSVNE GeneTree:ENSGT00690000101787 IPI:IPI00687479
UniGene:Bt.59135 EMBL:DAAA02006263 ProteinModelPortal:F1MLP7
Ensembl:ENSBTAT00000022372 Uniprot:F1MLP7
Length = 358
Score = 127 (49.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 61/262 (23%), Positives = 110/262 (41%)
Query: 41 NKASVLALNWGNVEESELLIAYSGQKIKIYDTD----FKNFNTNTDVSFGEGDIVGVSRY 96
+ +V+ L++ N + S L A + + + ++D++ K +T SF R
Sbjct: 109 HSGAVMELHY-NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHT--SF-VNSCYPARRG 164
Query: 97 DECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDL 156
+ + T G VKLW + + T F Q+ + N S+ I +GG +ND+K+WDL
Sbjct: 165 PQLVCTGSDDGTVKLWDIRKKAAIQT-FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDL 223
Query: 157 NTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDP 216
K ++ + + V S+ + L N + D K+ V+++
Sbjct: 224 RQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVW---DVRPFAPKERCVKIFQG 280
Query: 217 KITTQRRPVLKVD-IPDVALSCITTTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFA 275
+ + +L+ PD S I + +V V TT + YK G A
Sbjct: 281 NVHNFEKNLLRCSWSPDG--SKIAAGSADRFVYVWDTTSRRIL----------YKLPGHA 328
Query: 276 GCVKDIACPLNENLILSVSLDR 297
G + ++A +E +ILS S D+
Sbjct: 329 GSINEVAFHPDEPIILSASSDK 350
>UNIPROTKB|F1SVA6 [details] [associations]
symbol:SNRNP40 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005737 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071013 KO:K12857
OMA:HAGSVNE GeneTree:ENSGT00690000101787 EMBL:FP565415
RefSeq:XP_003356314.1 ProteinModelPortal:F1SVA6
Ensembl:ENSSSCT00000003991 GeneID:100624754 KEGG:ssc:100624754
Uniprot:F1SVA6
Length = 358
Score = 127 (49.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 61/262 (23%), Positives = 110/262 (41%)
Query: 41 NKASVLALNWGNVEESELLIAYSGQKIKIYDTD----FKNFNTNTDVSFGEGDIVGVSRY 96
+ +V+ L++ N + S L A + + + ++D++ K +T SF R
Sbjct: 109 HSGAVMELHY-NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHT--SF-VNSCYPARRG 164
Query: 97 DECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDL 156
+ + T G VKLW + + T F Q+ + N S+ I +GG +ND+K+WDL
Sbjct: 165 PQLVCTGSDDGTVKLWDIRKKAAIQT-FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDL 223
Query: 157 NTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDP 216
K ++ + + V S+ + L N + D K+ V+++
Sbjct: 224 RQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVW---DVRPFAPKERCVKIFQG 280
Query: 217 KITTQRRPVLKVD-IPDVALSCITTTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFA 275
+ + +L+ PD S I + +V V TT + YK G A
Sbjct: 281 NVHNFEKNLLRCSWSPDG--SKIAAGSADRFVYVWDTTSRRIL----------YKLPGHA 328
Query: 276 GCVKDIACPLNENLILSVSLDR 297
G + ++A +E +ILS S D+
Sbjct: 329 GSINEVAFHPDEPIILSASSDK 350
>POMBASE|SPBC83.15 [details] [associations]
symbol:SPBC83.15 "ribosome biogenesis protein Nsa1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=ISS] [GO:0043234 "protein complex" evidence=NAS]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
SMART:SM00320 PomBase:SPBC83.15 GO:GO:0005634 GO:GO:0043234
GO:GO:0005730 Gene3D:2.130.10.10 SUPFAM:SSF50978 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0042254 GO:GO:0006364
eggNOG:NOG329513 KO:K14841 PIR:T40704 RefSeq:NP_595647.1
ProteinModelPortal:O94698 EnsemblFungi:SPBC83.15.1 GeneID:2541163
KEGG:spo:SPBC83.15 OrthoDB:EOG432476 NextBio:20802276
Uniprot:O94698
Length = 387
Score = 120 (47.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 51/191 (26%), Positives = 78/191 (40%)
Query: 149 NDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPN---------S 199
++L+LW +F KNV K D +LR VW+ GI F +
Sbjct: 166 DELELWRTENVVKVFQGKNV---------KNDSLNLRVRVWITGIVFTEDIINVIDGKSE 216
Query: 200 DKVAVC------SKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGSTT 253
D ++C + G +R YD K RRPV D+ LS + +
Sbjct: 217 DDESLCFHFATITHYGQLRFYDTK--HGRRPVSTFDVSTSPLSHVGLLPSIKLLYFADKR 274
Query: 254 GDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVHDFHSKKLLRKD 313
+ D K K +++G G I C L N++ LDR+ R+ D +K L
Sbjct: 275 AQISIFD-HSKKKVIGRFQGVKGAPSSIHC-LG-NVVAITGLDRNVRIFDA-DRKPLANA 330
Query: 314 YMQSRLTSILV 324
Y+++ TSI+V
Sbjct: 331 YIKALPTSIIV 341
Score = 48 (22.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 72 TDFKNFNTNTDV--SFGEGD----IVGVSRYDECILTAVKSGDVKLWRYKTEP 118
TD N + V FGE D ++ + +++ + A K+G ++ W EP
Sbjct: 21 TDTSNPESEAPVIQKFGELDREKGVLFMLKHEMNVFVARKNGTIECWNVNQEP 73
Score = 45 (20.9 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 8/51 (15%), Positives = 27/51 (52%)
Query: 3 LADDYNIYIGSSTGAFKGVNLSKDKCIIKNIQNV-KYITNKASVLALNWGN 52
L + N+++ G + N++++ I+ ++ + + AS++++ + N
Sbjct: 49 LKHEMNVFVARKNGTIECWNVNQEPPILSSLWQLDSSLLETASIVSMKYSN 99
>UNIPROTKB|F1NUK8 [details] [associations]
symbol:SNRNP40 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005737 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0071013 OMA:HAGSVNE
GeneTree:ENSGT00690000101787 EMBL:AADN02051366 EMBL:AADN02051367
EMBL:AADN02051368 EMBL:AADN02051369 EMBL:AADN02051370
EMBL:AADN02051371 EMBL:AADN02051372 EMBL:AADN02051373
IPI:IPI00593723 Ensembl:ENSGALT00000041219 ArrayExpress:F1NUK8
Uniprot:F1NUK8
Length = 384
Score = 126 (49.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 62/262 (23%), Positives = 109/262 (41%)
Query: 41 NKASVLALNWGNVEESELLIAYSGQKIKIYDTD----FKNFNTNTDVSFGEGDIVGVSRY 96
+ +V+ L++ N + S L A + + + ++D++ K +T SF R
Sbjct: 135 HSGAVMELHY-NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHT--SF-VNSCYPARRG 190
Query: 97 DECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDL 156
+ + T G VKLW + + T F Q+ + N S+ I +GG +ND+K+WDL
Sbjct: 191 PQLVCTGSDDGTVKLWDIRKKAAVQT-FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDL 249
Query: 157 NTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDP 216
K ++ + + V S+ + L N + D K+ V+++
Sbjct: 250 RQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIW---DVRPFAPKERCVKIFQG 306
Query: 217 KITTQRRPVLKVD-IPDVALSCITTTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFA 275
+ + +L+ PD S I + +V V TT + YK G A
Sbjct: 307 NVHNFEKNLLRCSWSPDG--SKIAGGSADRFVYVWDTTSRRIL----------YKLPGHA 354
Query: 276 GCVKDIACPLNENLILSVSLDR 297
G V ++A E +ILS S D+
Sbjct: 355 GSVNELAFHPEEPIILSASSDK 376
>UNIPROTKB|Q96DI7 [details] [associations]
symbol:SNRNP40 "U5 small nuclear ribonucleoprotein 40 kDa
protein" species:9606 "Homo sapiens" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=NAS] [GO:0000375 "RNA splicing,
via transesterification reactions" evidence=TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0005682 "U5 snRNP"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005737 GO:GO:0005654
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 eggNOG:COG2319 InterPro:IPR020472 PRINTS:PR00320
Reactome:REACT_1675 GO:GO:0005682 GO:GO:0000398 GO:GO:0071013
HOGENOM:HOG000091644 KO:K12857 GO:GO:0005732 EMBL:AL451070
EMBL:AC114495 CTD:9410 HOVERGEN:HBG105197 OrthoDB:EOG4JM7Q0
EMBL:AF090988 EMBL:BC001494 EMBL:AF083383 IPI:IPI00940685
RefSeq:NP_004805.2 UniGene:Hs.33962 ProteinModelPortal:Q96DI7
SMR:Q96DI7 IntAct:Q96DI7 MINT:MINT-1410013 STRING:Q96DI7
PhosphoSite:Q96DI7 DMDM:67462075 PaxDb:Q96DI7 PeptideAtlas:Q96DI7
PRIDE:Q96DI7 DNASU:9410 Ensembl:ENST00000263694 GeneID:9410
KEGG:hsa:9410 UCSC:uc001bso.3 GeneCards:GC01M031732 HGNC:HGNC:30857
HPA:HPA026527 HPA:HPA027345 MIM:607797 neXtProt:NX_Q96DI7
PharmGKB:PA164726132 InParanoid:Q96DI7 PhylomeDB:Q96DI7
ChiTaRS:SNRNP40 GenomeRNAi:9410 NextBio:35252 ArrayExpress:Q96DI7
Bgee:Q96DI7 CleanEx:HS_SNRNP40 Genevestigator:Q96DI7
GermOnline:ENSG00000060688 Uniprot:Q96DI7
Length = 357
Score = 125 (49.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 60/262 (22%), Positives = 110/262 (41%)
Query: 41 NKASVLALNWGNVEESELLIAYSGQKIKIYDTD----FKNFNTNTDVSFGEGDIVGVSRY 96
+ +V+ L++ N + S L A + + + ++D++ K +T SF R
Sbjct: 108 HSGAVMELHY-NTDGSMLFSASTDKTVAVWDSETGERVKRLKGHT--SF-VNSCYPARRG 163
Query: 97 DECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDL 156
+ + T G VKLW + + T F Q+ + N S+ I +GG +ND+K+WDL
Sbjct: 164 PQLVCTGSDDGTVKLWDIRKKAAIQT-FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDL 222
Query: 157 NTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDP 216
K ++ + + V S+ + L N + D K+ V+++
Sbjct: 223 RQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVW---DVRPFAPKERCVKIFQG 279
Query: 217 KITTQRRPVLKVD-IPDVALSCITTTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFA 275
+ + +L+ PD S I + +V V TT + YK G A
Sbjct: 280 NVHNFEKNLLRCSWSPDG--SKIAAGSADRFVYVWDTTSRRIL----------YKLPGHA 327
Query: 276 GCVKDIACPLNENLILSVSLDR 297
G + ++A +E +I+S S D+
Sbjct: 328 GSINEVAFHPDEPIIISASSDK 349
>UNIPROTKB|F1NIY8 [details] [associations]
symbol:F1NIY8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005634 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 InterPro:IPR020472 PRINTS:PR00320
GeneTree:ENSGT00550000075093 OMA:AAKDCTI EMBL:AADN02052957
EMBL:AADN02052958 IPI:IPI00601574 ProteinModelPortal:F1NIY8
Ensembl:ENSGALT00000002170 Uniprot:F1NIY8
Length = 364
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 38/161 (23%), Positives = 76/161 (47%)
Query: 57 ELLIAYSGQKIKIYDTDFKNFNTNTDVSFGEGDIV-GVSRYD-ECILTAV-KSGDVKLWR 113
+L A + +K+++ + N + FG D++ G+ EC +T+ + G V+ W+
Sbjct: 198 QLYSASHDRSVKVWNVEE---NAYVETLFGHQDVITGMDSLSRECCVTSGGRDGTVRFWK 254
Query: 114 YKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVL 173
E Q + ++C++ ++++ G + + LW L K + + SH
Sbjct: 255 IPEE-SQLIFYGHQGSIDCIQLINEEHMVS-GADDGSVALWGLAKKKPLALVRQ-SH--- 308
Query: 174 VYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVY 214
+ DL++P WV+ ++ L NSD VA S G V+++
Sbjct: 309 --GTQGSAQDLQQPYWVSAVAALLNSDLVATGSHSGCVKLW 347
>UNIPROTKB|F1SQR9 [details] [associations]
symbol:NEDD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045177 "apical part of cell" evidence=IEA] [GO:0005932
"microtubule basal body" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA] [GO:0000242
"pericentriolar material" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005814 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0045177
GO:GO:0005932 GO:GO:0000242 GO:GO:0000922
GeneTree:ENSGT00390000001561 EMBL:CU896549
Ensembl:ENSSSCT00000000974 OMA:XPKIASS Uniprot:F1SQR9
Length = 390
Score = 95 (38.5 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 30/111 (27%), Positives = 49/111 (44%)
Query: 55 ESELLIAYSGQKIKIYD----TDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGD-V 109
+ L A SG +KI+D T FN +T G + S + ++TA SGD +
Sbjct: 2 QENLRFASSGDDVKIWDASSMTLVDKFNPHTS-PHGISSVCWSSN-NNFLVTASSSGDKI 59
Query: 110 KLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTK 160
+ K +P G + C+ N S + +GG N + +WDL + +
Sbjct: 60 VVSSCKCKPVPLLELGEGQKQTCVSLNSTSMYLVSGGLNNTVNIWDLKSKR 110
Score = 64 (27.6 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 284 PLNENLILSVSLDRHFRVHDFHSKKLLRKDYMQSRLTSI 322
P+NE L +++ LD+ ++D SKK+++ + LT++
Sbjct: 216 PVNELLFVTIGLDKRIILYDTSSKKIVKTLVADAPLTAV 254
Score = 41 (19.5 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 211 VRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGSTTGDMM 257
V ++D K R LK D D ++C+T Y+ GS +G+++
Sbjct: 101 VNIWDLKSKRVHRS-LK-DHKD-EVTCVTYNWNDCYIASGSLSGEII 144
>MGI|MGI:97293 [details] [associations]
symbol:Nedd1 "neural precursor cell expressed, developmentally
down-regulated gene 1" species:10090 "Mus musculus" [GO:0000242
"pericentriolar material" evidence=IDA] [GO:0000922 "spindle pole"
evidence=IDA] [GO:0000924 "gamma-tubulin ring complex, centrosomal"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005813
"centrosome" evidence=ISO;IDA] [GO:0005814 "centriole"
evidence=IDA] [GO:0005856 "cytoskeleton" evidence=IEA] [GO:0005932
"microtubule basal body" evidence=IDA] [GO:0007019 "microtubule
depolymerization" evidence=ISO] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0031109
"microtubule polymerization or depolymerization" evidence=ISO]
[GO:0045177 "apical part of cell" evidence=IDA] [GO:0051301 "cell
division" evidence=IEA] [GO:0070201 "regulation of establishment of
protein localization" evidence=ISO] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 MGI:MGI:97293 GO:GO:0051301
GO:GO:0007067 GO:GO:0005814 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319 GO:GO:0045177
GO:GO:0005932 GO:GO:0000922 GO:GO:0007019 GO:GO:0070201 CTD:121441
GeneTree:ENSGT00390000001561 HOGENOM:HOG000034642
HOVERGEN:HBG055623 KO:K16547 OMA:FSPIRDD OrthoDB:EOG4NZTSQ
EMBL:D10712 EMBL:AK048393 EMBL:AK085355 EMBL:AK090040 EMBL:AK010591
EMBL:AK153746 EMBL:BC052430 EMBL:BC066870 IPI:IPI00110438
IPI:IPI00656324 PIR:I60167 RefSeq:NP_032708.2 UniGene:Mm.2998
ProteinModelPortal:P33215 SMR:P33215 IntAct:P33215 STRING:P33215
PhosphoSite:P33215 PaxDb:P33215 PRIDE:P33215
Ensembl:ENSMUST00000020163 GeneID:17997 KEGG:mmu:17997
UCSC:uc007gud.2 UCSC:uc007gue.2 InParanoid:P33215 NextBio:292991
Bgee:P33215 Genevestigator:P33215 GermOnline:ENSMUSG00000019988
GO:GO:0000924 Uniprot:P33215
Length = 660
Score = 103 (41.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 32/111 (28%), Positives = 50/111 (45%)
Query: 55 ESELLIAYSGQKIKIYDTDF----KNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGD-V 109
+ L A SG +KI+D F FN +T G I S + ++TA SGD +
Sbjct: 2 QENLRFASSGDDVKIWDASFLTLVDKFNPHTS-PHGISSICWSSN-NNFLVTASSSGDKI 59
Query: 110 KLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTK 160
+ K +P G + C+ N S +A+GG N + +WDL + +
Sbjct: 60 VVSSCKCKPVPLLELAEGQKQTCVDLNSTSMYLASGGLNNTVNIWDLKSKR 110
Score = 66 (28.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 284 PLNENLILSVSLDRHFRVHDFHSKKLLRKDYMQSRLTSI 322
P+NE L +++ LD+ ++D SKKL++ + LT++
Sbjct: 216 PVNELLFVTIGLDKRIILYDTSSKKLVKTLVADTPLTAV 254
>ZFIN|ZDB-GENE-040426-978 [details] [associations]
symbol:snrnp40 "small nuclear ribonucleoprotein 40
(U5)" species:7955 "Danio rerio" [GO:0008150 "biological_process"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
ZFIN:ZDB-GENE-040426-978 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 GO:GO:0003676 GO:GO:0030529
HSSP:P16649 HOGENOM:HOG000091644 KO:K12857 OMA:HAGSVNE
GeneTree:ENSGT00690000101787 CTD:9410 HOVERGEN:HBG105197
OrthoDB:EOG4JM7Q0 EMBL:CU207343 EMBL:BC051783 IPI:IPI00506401
RefSeq:NP_956616.1 UniGene:Dr.133508 STRING:Q7ZTY9
Ensembl:ENSDART00000038230 GeneID:393292 KEGG:dre:393292
InParanoid:Q7ZTY9 NextBio:20814348 Uniprot:Q7ZTY9
Length = 347
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 61/265 (23%), Positives = 107/265 (40%)
Query: 41 NKASVLALNWGNVEESELLIAYSGQKIKIYDTD----FKNFNTNTDVSFGEGDIVGVSRY 96
+ +V+ L++ N + S L A + + + ++D++ K +T SF R
Sbjct: 98 HSGAVMELHY-NTDGSLLFSASTDKTVCVWDSETGERVKRLKGHT--SF-VNSCFPARRG 153
Query: 97 DECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDL 156
+ T G VKLW + + T F Q+ + N S+ I +GG +ND+K+WDL
Sbjct: 154 PQLACTGSDDGTVKLWDIRKKASVHT-FQNTYQVLSVTFNDTSDQIISGGIDNDIKVWDL 212
Query: 157 NTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDP 216
K I+S + V S+ D L N + D K+ V+++
Sbjct: 213 RQNKLIYSMQGHGDSVTGLSLSADGSYLLSNSMDNSVRVW---DIRPFAPKERCVKIFQG 269
Query: 217 KITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAG 276
+ + +L+ S I + +V + TT + YK G AG
Sbjct: 270 NVHNFEKNLLRCSWSADG-SKIAAGSADRFVYIWDTTTRRIV----------YKLPGHAG 318
Query: 277 CVKDIACPLNENLILSVSLDRHFRV 301
V ++A E ++LS S D+ +
Sbjct: 319 SVNEVAFHPEEPIVLSGSSDKRLYI 343
>UNIPROTKB|G3V3F1 [details] [associations]
symbol:NEDD1 "Neural cell expressed, developmentally
down-regulated 1, isoform CRA_c" species:9606 "Homo sapiens"
[GO:0000242 "pericentriolar material" evidence=IEA] [GO:0000922
"spindle pole" evidence=IEA] [GO:0005814 "centriole" evidence=IEA]
[GO:0005932 "microtubule basal body" evidence=IEA] [GO:0045177
"apical part of cell" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 GO:GO:0005814 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0045177
EMBL:CH471054 GO:GO:0005932 GO:GO:0000242 GO:GO:0000922 CTD:121441
KO:K16547 OMA:FSPIRDD EMBL:AC007564 EMBL:AC013417
RefSeq:NP_001128647.1 UniGene:Hs.740471 GeneID:121441
KEGG:hsa:121441 HGNC:HGNC:7723 GenomeRNAi:121441 NextBio:80736
ProteinModelPortal:G3V3F1 SMR:G3V3F1 PRIDE:G3V3F1
Ensembl:ENST00000557644 ArrayExpress:G3V3F1 Bgee:G3V3F1
Uniprot:G3V3F1
Length = 667
Score = 102 (41.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 37/127 (29%), Positives = 56/127 (44%)
Query: 51 GNVEESELLIAYSGQKIKIYD----TDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKS 106
G V + L A SG IKI+D T FN +T G I S + ++TA S
Sbjct: 5 GAVMQENLRFASSGDDIKIWDASSMTLVDKFNPHTS-PHGISSICWSSN-NNFLVTASSS 62
Query: 107 GD-VKLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSA 165
GD + + K +P G + C+ N S + +GG N + +WDL + + S
Sbjct: 63 GDKIVVSSCKCKPVPLLELAEGQKQTCVNLNSTSMYLVSGGLNNTVNIWDLKSKRVHRSL 122
Query: 166 KNVSHRV 172
K+ +V
Sbjct: 123 KDHKDQV 129
Score = 66 (28.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 284 PLNENLILSVSLDRHFRVHDFHSKKLLRKDYMQSRLTSI 322
P+NE L +++ LD+ ++D SKKL++ + LT++
Sbjct: 223 PVNELLFVTIGLDKRIILYDTSSKKLVKTLVADTPLTAV 261
>UNIPROTKB|E2R5C6 [details] [associations]
symbol:NEDD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045177 "apical part of cell" evidence=IEA]
[GO:0005932 "microtubule basal body" evidence=IEA] [GO:0005814
"centriole" evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA]
[GO:0000242 "pericentriolar material" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005814 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
InterPro:IPR019775 GO:GO:0045177 GO:GO:0005932 GO:GO:0000242
GO:GO:0000922 GeneTree:ENSGT00390000001561 OMA:FSPIRDD
EMBL:AAEX03009959 Ensembl:ENSCAFT00000010522 Uniprot:E2R5C6
Length = 734
Score = 101 (40.6 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 33/117 (28%), Positives = 53/117 (45%)
Query: 50 W-GNVEESELLIAYSGQKIKIYD----TDFKNFNTNTDVSFGEGDIVGVSRYDECILTAV 104
W G V + L A SG IKI+D T F+ +T G + S + ++TA
Sbjct: 72 WRGAVMQENLRFASSGDDIKIWDASSLTLVDKFSPHTS-PHGISSMCWSSN-NNFLVTAS 129
Query: 105 KSGD-VKLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTK 160
SGD + + YK +P G + C+ N S + +GG + + +WDL + +
Sbjct: 130 SSGDKIVVSHYKNKPFLLFELGEGQKQTCVSLNSTSMYLVSGGLNHTVNIWDLKSKR 186
Score = 66 (28.3 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 284 PLNENLILSVSLDRHFRVHDFHSKKLLRKDYMQSRLTSI 322
P+NE L +++ LD+ ++D SKKL++ + LT++
Sbjct: 292 PVNELLFVTIGLDKRIILYDTSSKKLVKTLVADTPLTAV 330
Score = 41 (19.5 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 211 VRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGSTTGDMM 257
V ++D K R LK D D ++C+T Y+ GS +G+++
Sbjct: 177 VNIWDLKSKRVHRS-LK-DHKD-EVTCVTYNWNDCYIASGSLSGEII 220
>RGD|1307750 [details] [associations]
symbol:Nedd1 "neural precursor cell expressed, developmentally
down-regulated 1" species:10116 "Rattus norvegicus" [GO:0000242
"pericentriolar material" evidence=IEA;ISO] [GO:0000922 "spindle
pole" evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005813 "centrosome" evidence=ISO] [GO:0005814 "centriole"
evidence=IEA;ISO] [GO:0005932 "microtubule basal body"
evidence=IEA;ISO] [GO:0045177 "apical part of cell"
evidence=IEA;ISO] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 RGD:1307750 GO:GO:0005814 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 GO:GO:0045177
GO:GO:0005932 GO:GO:0000242 GO:GO:0000922
GeneTree:ENSGT00390000001561 OMA:FSPIRDD OrthoDB:EOG4NZTSQ
IPI:IPI00366204 Ensembl:ENSRNOT00000005463 UCSC:RGD:1307750
Uniprot:D3ZAH3
Length = 659
Score = 100 (40.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 34/123 (27%), Positives = 53/123 (43%)
Query: 55 ESELLIAYSGQKIKIYDTDF----KNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGD-V 109
+ L A SG +KI+D F FN +T G I S + ++TA GD +
Sbjct: 2 QENLRFASSGDDVKIWDASFLTLVDKFNPHTS-PHGISSICWSSN-NNFLVTASSGGDKI 59
Query: 110 KLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVS 169
+ K +P G + C+ N S +A+GG N + +WDL + + S K+
Sbjct: 60 VVSSCKCKPVPLLELAEGQKQTCVDLNSTSMYLASGGLNNTVNIWDLKSKRLHRSLKDHK 119
Query: 170 HRV 172
V
Sbjct: 120 REV 122
Score = 66 (28.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 284 PLNENLILSVSLDRHFRVHDFHSKKLLRKDYMQSRLTSI 322
P+NE L +++ LD+ ++D SKKL++ + LT++
Sbjct: 216 PVNELLFVTIGLDKRIILYDTSSKKLVKTLVADTPLTAV 254
>CGD|CAL0005992 [details] [associations]
symbol:orf19.3581 species:5476 "Candida albicans" [GO:0042393
"histone binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0033186 "CAF-1 complex" evidence=IEA] [GO:0006335
"DNA replication-dependent nucleosome assembly" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
CGD:CAL0005992 GO:GO:0005634 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319 EMBL:AACQ01000094
EMBL:AACQ01000093 InterPro:IPR022052 Pfam:PF12265
HOGENOM:HOG000160330 RefSeq:XP_714940.1 RefSeq:XP_715003.1
ProteinModelPortal:Q59ZD9 STRING:Q59ZD9 GeneID:3643390
GeneID:3643420 KEGG:cal:CaO19.11065 KEGG:cal:CaO19.3581
Uniprot:Q59ZD9
Length = 435
Score = 116 (45.9 bits), Expect = 0.00066, P = 0.00066
Identities = 32/135 (23%), Positives = 59/135 (43%)
Query: 37 KYITNKASVLALNWGNVEESELLIAYSGQKIKIYDTDFKNFNTNTDVSFGEGDIVGVS-- 94
K+I + + A++W E LL A + +YD T + + E + +GV+
Sbjct: 213 KHIPSTTDIFAIDWNRNSEGLLLSADMNGLVNLYDLKKYESETLNESQYWENNAIGVNDI 272
Query: 95 ----RYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNK-HSNIIATGGKEN 149
+D TA +G +KL+ + + N N+G + + N ++ +ATG
Sbjct: 273 EWFPTHDSLFCTADDNGWLKLYDTRNQSAAVQNANIGNSVNSVACNPGYATGLATGDSNG 332
Query: 150 DLKLWDLNTTKNIFS 164
+K+WD+ N S
Sbjct: 333 VIKMWDIRNFDNSLS 347
>UNIPROTKB|Q8NHV4 [details] [associations]
symbol:NEDD1 "Protein NEDD1" species:9606 "Homo sapiens"
[GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005813 "centrosome" evidence=IDA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
SMART:SM00320 GO:GO:0005829 GO:GO:0005813 Reactome:REACT_115566
GO:GO:0000086 GO:GO:0051301 GO:GO:0007067 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
EMBL:CH471054 CTD:121441 HOGENOM:HOG000034642 HOVERGEN:HBG055623
KO:K16547 OrthoDB:EOG4NZTSQ EMBL:AK093221 EMBL:AK303656
EMBL:AK315821 EMBL:AC007564 EMBL:AC013417 EMBL:BC027605
IPI:IPI00169345 IPI:IPI00789363 RefSeq:NP_001128647.1
RefSeq:NP_001128648.1 RefSeq:NP_001128649.1 RefSeq:NP_690869.1
UniGene:Hs.740471 ProteinModelPortal:Q8NHV4 SMR:Q8NHV4
DIP:DIP-48838N IntAct:Q8NHV4 STRING:Q8NHV4 PhosphoSite:Q8NHV4
DMDM:74762597 PaxDb:Q8NHV4 PRIDE:Q8NHV4 DNASU:121441
Ensembl:ENST00000266742 Ensembl:ENST00000411739
Ensembl:ENST00000429527 Ensembl:ENST00000457368 GeneID:121441
KEGG:hsa:121441 UCSC:uc001teu.4 GeneCards:GC12P097301
HGNC:HGNC:7723 HPA:HPA038591 MIM:600372 neXtProt:NX_Q8NHV4
PharmGKB:PA31531 InParanoid:Q8NHV4 PhylomeDB:Q8NHV4
GenomeRNAi:121441 NextBio:80736 ArrayExpress:Q8NHV4 Bgee:Q8NHV4
CleanEx:HS_NEDD1 Genevestigator:Q8NHV4 GermOnline:ENSG00000139350
Uniprot:Q8NHV4
Length = 660
Score = 96 (38.9 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 35/123 (28%), Positives = 54/123 (43%)
Query: 55 ESELLIAYSGQKIKIYD----TDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGD-V 109
+ L A SG IKI+D T FN +T G I S + ++TA SGD +
Sbjct: 2 QENLRFASSGDDIKIWDASSMTLVDKFNPHTS-PHGISSICWSSN-NNFLVTASSSGDKI 59
Query: 110 KLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVS 169
+ K +P G + C+ N S + +GG N + +WDL + + S K+
Sbjct: 60 VVSSCKCKPVPLLELAEGQKQTCVNLNSTSMYLVSGGLNNTVNIWDLKSKRVHRSLKDHK 119
Query: 170 HRV 172
+V
Sbjct: 120 DQV 122
Score = 66 (28.3 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 284 PLNENLILSVSLDRHFRVHDFHSKKLLRKDYMQSRLTSI 322
P+NE L +++ LD+ ++D SKKL++ + LT++
Sbjct: 216 PVNELLFVTIGLDKRIILYDTSSKKLVKTLVADTPLTAV 254
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 444 368 0.00085 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 30
No. of states in DFA: 613 (65 KB)
Total size of DFA: 262 KB (2139 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.10u 0.15s 31.25t Elapsed: 00:00:02
Total cpu time: 31.11u 0.15s 31.26t Elapsed: 00:00:02
Start: Thu Aug 15 15:26:01 2013 End: Thu Aug 15 15:26:03 2013