RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8152
(444 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 62.1 bits (149), Expect = 3e-11
Identities = 26/194 (13%), Positives = 56/194 (28%), Gaps = 20/194 (10%)
Query: 110 KLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVS 169
LW +T T + + + + +G + KLWD+ +
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 170 HRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVD 229
+N I F PN + A S R++D + + D
Sbjct: 227 S------------------DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHD 267
Query: 230 IPDVALSCITTTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENL 289
++ ++ + ++ G + D K G V + +
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL-KADRAGVLAGHDNRVSCLGVTDDGMA 326
Query: 290 ILSVSLDRHFRVHD 303
+ + S D ++ +
Sbjct: 327 VATGSWDSFLKIWN 340
Score = 47.4 bits (111), Expect = 2e-06
Identities = 11/127 (8%), Positives = 36/127 (28%), Gaps = 20/127 (15%)
Query: 91 VGVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGP--QLECMKHNKHSNIIATGGKE 148
+ T +L+ + + + T + + + +K ++ G +
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 149 NDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQ 208
+ +WD + V+ + + VA S
Sbjct: 292 FNCNVWDALKADRAGVLAGHDN------------------RVSCLGVTDDGMAVATGSWD 333
Query: 209 GYVRVYD 215
++++++
Sbjct: 334 SFLKIWN 340
Score = 26.6 bits (57), Expect = 6.2
Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Query: 189 WVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVI 248
+ + + +S + S+ G + ++D + V + + + +YV
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWD---SYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 249 VGSTTGDMMAVDLRGKGKPCYKYKGFAGC 277
G +L+ + + AG
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGH 142
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 52.5 bits (124), Expect = 5e-08
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 24/139 (17%)
Query: 91 VGVSRYDECILTAVKSGDVKLWRYKT------------EPDQWTNFNVGPQLECMKHNKH 138
V +R + +++ VKLW + + T + + ++
Sbjct: 260 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 319
Query: 139 SNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPN 198
I +G K+ + WD + + + HR V SV NG S P
Sbjct: 320 DEYILSGSKDRGVLFWDKKSGNPLLMLQ--GHRNSVISV----------AVANGSSLGPE 367
Query: 199 SDKVAVCSKQGYVRVYDPK 217
+ A S R++ K
Sbjct: 368 YNVFATGSGDCKARIWKYK 386
Score = 41.7 bits (96), Expect = 1e-04
Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 5/181 (2%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C+K + +ATG + +++ ++ + + S +++
Sbjct: 67 CVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 125
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
+ F P+ +A ++ +R++D + + + +L + ++
Sbjct: 126 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 185
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVHDFHSKKLLR 311
T G+ G P + I + SLDR RV D + L+
Sbjct: 186 TVRIWDLRT----GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241
Query: 312 K 312
+
Sbjct: 242 R 242
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 50.9 bits (120), Expect = 1e-07
Identities = 21/169 (12%), Positives = 49/169 (28%), Gaps = 19/169 (11%)
Query: 48 LNWGNVEESELLIAYSGQKIKIYDTDFKNFNTNTDVSFGEGDIVGVSRYDECIL-TAVKS 106
+ V E + + + ++ + +S G S L + +
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226
Query: 107 GDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAK 166
+K+W T T + + + I + + L++WD + + +
Sbjct: 227 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286
Query: 167 NVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYD 215
H +V + F + V S V+V++
Sbjct: 287 AHEH------------------FVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 42.0 bits (97), Expect = 7e-05
Identities = 25/157 (15%), Positives = 56/157 (35%), Gaps = 21/157 (13%)
Query: 98 ECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLN 157
EC + V +++ + E K K + +G ++ +K+WD++
Sbjct: 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235
Query: 158 TTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPK 217
T + + + WV G+ F + C+ +RV+D K
Sbjct: 236 TGMCLMTLVGHDN------------------WVRGVLFHSGGKFILSCADDKTLRVWDYK 277
Query: 218 ITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGSTTG 254
+R + ++ + ++ + + YV+ GS
Sbjct: 278 ---NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311
Score = 38.2 bits (87), Expect = 0.001
Identities = 23/181 (12%), Positives = 52/181 (28%), Gaps = 22/181 (12%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
+ + +++ + ++ +K+WD T + K + V S L
Sbjct: 22 RVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 81
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
I + + G+ + + IV +
Sbjct: 82 TIKLWDFQGFECIRTMHGHDHNV----------------------SSVSIMPNGDHIVSA 119
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVHDFHSKKLLR 311
+ + + G + G V+ + + LI S S D+ RV +K+
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179
Query: 312 K 312
+
Sbjct: 180 E 180
Score = 36.6 bits (83), Expect = 0.004
Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 4/120 (3%)
Query: 189 WVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVI 248
V + F P + S+ ++V+D + ++ I+ + +
Sbjct: 19 PVTRVIFHPVFSVMVSASEDATIKVWD---YETGDFERTLKGHTDSVQDISFDHSGKLLA 75
Query: 249 VGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
S + D +G + P N + I+S S D+ ++ + +
Sbjct: 76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGY 134
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 47.9 bits (112), Expect = 1e-06
Identities = 27/188 (14%), Positives = 59/188 (31%), Gaps = 20/188 (10%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C NK IA +++ +++ + K + + H V
Sbjct: 12 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN----------------GQVT 55
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
G+ + P+S+++ C V+ K T + ++ + I A C+ VGS
Sbjct: 56 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAA-RCVRWAPNEKKFAVGS 114
Query: 252 TTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACP---LNENLILSVSLDRHFRVHDFHSKK 308
+ + + + N L+ + S D R+ + K+
Sbjct: 115 GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE 174
Query: 309 LLRKDYMQ 316
+ +
Sbjct: 175 VEERPAPT 182
Score = 38.7 bits (88), Expect = 0.001
Identities = 37/325 (11%), Positives = 92/325 (28%), Gaps = 16/325 (4%)
Query: 9 IYIGSSTGAFKGVNLSKDKCIIKNIQNVKYITNKASVLALNWGNVEESELLIAYSGQKIK 68
I I + S +K + Q + + V ++W + + ++ + +
Sbjct: 22 IAICPNNHEVHIYEKSGNKWV----QVHELKEHNGQVTGVDW-APDSNRIVTCGTDRNAY 76
Query: 69 IYDTDFKNFNTNTDVSFGEGDIVGVSRYDECILT--AVKSGDVKLWRYKTEPDQWTNFNV 126
++ + + + V S + + ++ E D W ++
Sbjct: 77 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 136
Query: 127 GPQLE----CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEF 182
+ + + +S ++A G + +++ + + +
Sbjct: 137 KKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 196
Query: 183 DLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTN 242
WV+G+ F N +VA S V + D + +P +T
Sbjct: 197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL---LAVTFIT 253
Query: 243 QSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVH 302
+S V G + + G K + +LD+
Sbjct: 254 ESSLVAAGH--DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 311
Query: 303 DFHSKKLLRKDYMQSRLTSILVRSD 327
+ ++ ++ I V S
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSG 336
Score = 33.7 bits (75), Expect = 0.044
Identities = 18/140 (12%), Positives = 46/140 (32%), Gaps = 2/140 (1%)
Query: 190 VNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIV 249
++ ++ + ++A+C V +Y+ + V ++ + ++ + S+ ++
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 250 GSTTGDMMAVDLRGKG-KPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVHDFHSKK 308
T + L+G+ KP + + NE S R + F +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 309 LLRKDYMQSRLTSILVRSDF 328
+ V S
Sbjct: 129 DWWVCKHIKKPIRSTVLSLD 148
Score = 30.6 bits (67), Expect = 0.41
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 135 HNKHSNIIATGGKENDLKLWDLNTTKNIFS 164
+ T G + + +WD+ + ++
Sbjct: 337 GKAKCSQFCTTGMDGGMSIWDVRSLESALK 366
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 47.5 bits (111), Expect = 1e-06
Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 19/104 (18%)
Query: 112 WRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHR 171
+ +PD++ + +K + GK+N L W +IF +K S
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-- 307
Query: 172 VLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYD 215
V + + S VY+
Sbjct: 308 -----------------SVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 36.7 bits (83), Expect = 0.005
Identities = 7/66 (10%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 91 VGVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKEND 150
+ + + ++ K + WR + + L + I TG +
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL-SCDISVDDKYIVTGSGDKK 329
Query: 151 LKLWDL 156
++++
Sbjct: 330 ATVYEV 335
Score = 35.2 bits (79), Expect = 0.015
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 189 WVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIP--DVALSCITTTNQSHY 246
V ++ + V K G V+V+D + PV ++D D +
Sbjct: 53 VVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111
Query: 247 VIVGSTTGDMM 257
+IVG +
Sbjct: 112 LIVGGEASTLS 122
Score = 29.8 bits (65), Expect = 0.61
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 14/79 (17%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
+ + + + TGGK +K+WD++ N + R ++
Sbjct: 56 AVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCL-------------NRDNYIR 101
Query: 192 GISFLPNSDKVAVCSKQGY 210
LP+ + V +
Sbjct: 102 SCKLLPDGCTLIVGGEAST 120
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 46.8 bits (109), Expect = 3e-06
Identities = 12/105 (11%), Positives = 30/105 (28%), Gaps = 17/105 (16%)
Query: 112 WRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHR 171
E D N + + + IA+ + +K+W++ T K +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT------- 275
Query: 172 VLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDP 216
+ + + + + S G++ +P
Sbjct: 276 ----------IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 46.8 bits (109), Expect = 3e-06
Identities = 24/254 (9%), Positives = 65/254 (25%), Gaps = 35/254 (13%)
Query: 87 EGDIVGVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLE-------------CM 133
+ DI VS + ++ G +K+W K ++
Sbjct: 14 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE 73
Query: 134 KHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGI 193
+ ++AT DL + + +L +K F +
Sbjct: 74 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF---WALKWGAS 130
Query: 194 SFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVD-IPDVALSCITTTNQSH------- 245
+ S ++ +G ++ L ++ P + L + +
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190
Query: 246 ------YVIVGSTTG-----DMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVS 294
+ G G ++ + + + + ++ + +L+
Sbjct: 191 DISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250
Query: 295 LDRHFRVHDFHSKK 308
F + +
Sbjct: 251 DSNSFGCITLYETE 264
Score = 31.4 bits (69), Expect = 0.19
Identities = 33/222 (14%), Positives = 66/222 (29%), Gaps = 20/222 (9%)
Query: 81 TDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHSN 140
T V E ++ + + + S L+ ++++ N N ++
Sbjct: 188 TSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247
Query: 141 IIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSD 200
I + L++ + I S +H + WV +SF + +
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-----WVMSLSFNDSGE 302
Query: 201 KVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGSTTGDMMAVD 260
+ G +R +D K T +R L + D+ ++ GD +A
Sbjct: 303 TLCSAGWDGKLRFWDVK-TKERITTLNMHCDDI--------EIEEDILAVDEHGDSLAEP 353
Query: 261 LRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVH 302
+ K + + V LDR R
Sbjct: 354 ------GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 43.8 bits (101), Expect = 3e-05
Identities = 11/105 (10%), Positives = 27/105 (25%), Gaps = 17/105 (16%)
Query: 112 WRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHR 171
+ + S AT G + +++WD+ T+K +
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ- 294
Query: 172 VLVYSVKPDEFDLRRPVWVNGISFLPNSDK-VAVCSKQGYVRVYD 215
+ + + + + S G + Y+
Sbjct: 295 ---------------QLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
Score = 29.5 bits (64), Expect = 0.86
Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 4/70 (5%)
Query: 237 CITTTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIA---CPLNENLILSV 293
+ S + D+ K K+ + + I+S+
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVT-TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314
Query: 294 SLDRHFRVHD 303
SLD ++
Sbjct: 315 SLDGTLNFYE 324
Score = 29.1 bits (63), Expect = 0.96
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 97 DECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMK---HNKHSNIIATGGKENDLKL 153
+ T +++W T QL + + I + + L
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 154 WDL 156
++L
Sbjct: 323 YEL 325
Score = 28.7 bits (62), Expect = 1.5
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 10/126 (7%)
Query: 190 VNGISFLPNSDKVAVCS-KQGYVRVYDPKITTQRRPVLKVDIPDVALSCIT--TTNQSHY 246
+S+ P ++ +A K +VR D + V ++ + S Y
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 247 VIVGSTTGDMMAVDLRGKGKPC-------YKYKGFAGCVKDIACPLNENLILSVSLDRHF 299
+ G +G ++ + +++ AG + DI+ + V R
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139
Query: 300 RVHDFH 305
Sbjct: 140 FGVFIS 145
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 39.7 bits (91), Expect = 5e-04
Identities = 21/155 (13%), Positives = 36/155 (23%), Gaps = 22/155 (14%)
Query: 78 NTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNK 137
+ I + TA KT F +L
Sbjct: 201 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS 260
Query: 138 HSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLP 197
+ G N L +DL K I + ++F
Sbjct: 261 PKDPNQIYGVLNRLAKYDLKQRKLIKA-------------------ANLDHTYYCVAFDK 301
Query: 198 NSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPD 232
DK+ + + V++P V + +P
Sbjct: 302 KGDKLYLGGTFNDLAVFNPD---TLEKVKNIKLPG 333
Score = 27.8 bits (60), Expect = 2.9
Identities = 9/120 (7%), Positives = 30/120 (25%), Gaps = 6/120 (5%)
Query: 192 GISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGS 251
G + + + V + + V D + + + + + ++ +
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 59
Query: 252 TTGDMMAVDLRGKGKPCY-----KYKGFAGCVKDIACPLNENLILSVSLDRHFRVHDFHS 306
GD+ +DL + + A + + + +
Sbjct: 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 38.3 bits (87), Expect = 0.001
Identities = 12/71 (16%), Positives = 26/71 (36%)
Query: 189 WVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVI 248
+++ I +P+ + + S G + VY I + +L+ L C + + I
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 249 VGSTTGDMMAV 259
T +
Sbjct: 73 YVGTVQGEILK 83
Score = 31.0 bits (68), Expect = 0.25
Identities = 2/47 (4%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKN-VSHRVLVYSV 177
+K +++ + L ++ + + ++ +
Sbjct: 16 DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Score = 30.2 bits (66), Expect = 0.55
Identities = 10/111 (9%), Positives = 33/111 (29%), Gaps = 19/111 (17%)
Query: 110 KLWRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVS 169
K + ++ + N+ + ++ + + T G + + W+L T K I +
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN----- 288
Query: 170 HRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITT 220
+ + + + + + + + + T
Sbjct: 289 --------------FAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT 325
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 37.9 bits (86), Expect = 0.002
Identities = 32/245 (13%), Positives = 67/245 (27%), Gaps = 34/245 (13%)
Query: 69 IYDTDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGP 128
+ D + + + V +++ VK+W +TE T G
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ--GH 176
Query: 129 QLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPV 188
+ +G + +++WD+ T I +
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT---------------- 220
Query: 189 WVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVI 248
+ + + V+++D K + + + + ++VI
Sbjct: 221 ----SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS--AVTCLQFNKNFVI 274
Query: 249 VGSTTGDMMAVDLRGKGKPCYKYK-----GFAGCVKDIACPLNENLILSVSLD----RHF 299
S G + DL+ G+ G G V I + + S +
Sbjct: 275 TSSDDGTVKLWDLK-TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 333
Query: 300 RVHDF 304
V DF
Sbjct: 334 LVLDF 338
Score = 35.9 bits (81), Expect = 0.007
Identities = 28/201 (13%), Positives = 53/201 (26%), Gaps = 14/201 (6%)
Query: 140 NIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNS 199
N I +G +N LK+W T K + + + V ++ + +
Sbjct: 28 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG 87
Query: 200 DKVAVCSKQG-------------YVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHY 246
+ + D + + + Q
Sbjct: 88 ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 147
Query: 247 VIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVHDFHS 306
V S D M V + + + + + ++S SLD RV D +
Sbjct: 148 RRVVSGAYDFM-VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 206
Query: 307 KKLLRKDYMQSRLTSILVRSD 327
+ LTS + D
Sbjct: 207 GNCIHTLTGHQSLTSGMELKD 227
Score = 29.4 bits (64), Expect = 0.88
Identities = 29/278 (10%), Positives = 72/278 (25%), Gaps = 63/278 (22%)
Query: 93 VSRYDECILTAVKSGDVKLWRYKT------------------------------------ 116
+ I++ +K+W T
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82
Query: 117 --EPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLV 174
E + + G + H + +G ++ L++WD+ T + + V
Sbjct: 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142
Query: 175 Y--------------SVKPDEFDLRRPVWV------NGISFLPNSDKVAVCSKQGYVRVY 214
VK + + + S + V S +RV+
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVW 202
Query: 215 DPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGF 274
D + + + + + ++ G+ + D++
Sbjct: 203 DVETGNCIHTLTGHQSLTSGMEL-----KDNILVSGNADSTVKIWDIKTGQCLQTLQGPN 257
Query: 275 AGCVKDIACPLNENLILSVSLDRHFRVHDFHSKKLLRK 312
N+N +++ S D ++ D + + +R
Sbjct: 258 KHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 37.1 bits (84), Expect = 0.003
Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 11/141 (7%)
Query: 24 SKDKCI-IKNIQNVKYI-TNKASVLALNWGNVEESELLIAYSGQKIKIYDTDFKNFNTNT 81
S D+ I + N +++ T + + ++ S I+++D +
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE--CGACLR 212
Query: 82 DVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNK---- 137
+ E + + ++ I++ G +K+W D ++H+
Sbjct: 213 VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 272
Query: 138 ---HSNIIATGGKENDLKLWD 155
I + ++ + +WD
Sbjct: 273 LQFDEFQIVSSSHDDTILIWD 293
Score = 35.6 bits (80), Expect = 0.009
Identities = 26/205 (12%), Positives = 55/205 (26%), Gaps = 27/205 (13%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVN 191
C++++ I +G ++N +K+WD NT + + VL
Sbjct: 20 CLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 77
Query: 192 GISFLPNSDKVAVCS--------------------KQGYVRVYDPKITTQRRPVLKVDIP 231
+ + + + K + V+D T +
Sbjct: 78 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 137
Query: 232 DVALSCITTTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLIL 291
+ Y++ S + + + G + + L++
Sbjct: 138 RA--AVNVVDFDDKYIVSASGDRTIKVWNTS-TCEFVRTLNGHKRGIAC--LQYRDRLVV 192
Query: 292 SVSLDRHFRVHDFHSKKLLRKDYMQ 316
S S D R+ D LR
Sbjct: 193 SGSSDNTIRLWDIECGACLRVLEGH 217
Score = 34.1 bits (76), Expect = 0.027
Identities = 23/206 (11%), Positives = 54/206 (26%), Gaps = 36/206 (17%)
Query: 107 GDVKLWRYKTEPDQWTNFNVGP-QLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSA 165
+ +W + D + + + I + + +K+W+ +T + + +
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174
Query: 166 KNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPV 225
+ V S +R++D + R
Sbjct: 175 NGHKRGIACLQ--------------------YRDRLVVSGSSDNTIRLWDIECGACLR-- 212
Query: 226 LKVDIPDVALSCITTTNQSHYVIVGSTTGDMMAVDLRGK--------GKPCYKYKGFAGC 277
+ + ++ G+ G + DL +G
Sbjct: 213 ---VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 269
Query: 278 VKDIACPLNENLILSVSLDRHFRVHD 303
V + +E I+S S D + D
Sbjct: 270 VFRLQF--DEFQIVSSSHDDTILIWD 293
>d1xksa_ b.69.14.1 (A:) Nuclear pore complex protein Nup133 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 403
Score = 34.1 bits (78), Expect = 0.027
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 202 VAVCSKQGYVRVYDPKITTQRRPV-LKVDIPDVALSCITTTNQSHYVIVGSTTGDMMAVD 260
V V +++G +R Y P + + VD T Q I+ S+ ++ +
Sbjct: 101 VMVATREGSIR-YWPSLAGEDTYTEAFVDSGGDKTYSFLTAVQGGSFILSSSGSQLIRLI 159
Query: 261 LRGKGKPCYK 270
GK
Sbjct: 160 PESSGKIHQH 169
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 33.0 bits (73), Expect = 0.053
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 132 CMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVK 178
+ + + + E + WD++T + + H ++ +K
Sbjct: 17 ALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD-VHATMITGIK 62
Score = 32.6 bits (72), Expect = 0.088
Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 3/117 (2%)
Query: 189 WVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVI 248
+ +S + + +G++ +D I+T + D+ ++ I TT++
Sbjct: 14 AITALSSSADGKTLFSADAEGHINSWD--ISTGISNRVFPDVHATMITGIKTTSKGDLFT 71
Query: 249 VGSTTGDMMAVDLRGKGKPCYKYKGFAGCVKDIACPLNENLILSVSLDRHFRVHDFH 305
V + V G G K + + ++ + ++V+ H
Sbjct: 72 VSWDD-HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127
Score = 31.9 bits (70), Expect = 0.13
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 96 YDECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNKHSN--IIATGGKENDLKL 153
+ + T V +W D + + N I + G+++++K
Sbjct: 235 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
Query: 154 WDL 156
W++
Sbjct: 295 WNV 297
Score = 28.4 bits (61), Expect = 1.6
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 237 CITTTNQSHYVIVGSTTGDMMAVDLR-GKGKPCYKYKGFAGCVKDIACPLNENLILSVSL 295
C++ + + + GS ++ ++ P A + LNE I+S
Sbjct: 229 CVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ 288
Query: 296 DRHFRVHD 303
D + + +
Sbjct: 289 DSNIKFWN 296
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 32.2 bits (71), Expect = 0.13
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 138 HSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPD 180
N + TG + ++++D K + V
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
Score = 31.0 bits (68), Expect = 0.28
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 112 WRYKTEPDQWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHR 171
+ + +++ NI+ +G EN +++L + K + A +
Sbjct: 267 GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV-HANILKDA 324
Query: 172 VLVYSVKPD 180
++SV
Sbjct: 325 DQIWSVNFK 333
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 30.6 bits (69), Expect = 0.15
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 377 SDYDDESDIEIVDEIDNDEDKQDESEEDGEEEGEEEASENEYYTETDEDEK 427
SD +D D + D+++ DE D + E + E + + ++
Sbjct: 2 SDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRI 52
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 30.5 bits (67), Expect = 0.37
Identities = 19/157 (12%), Positives = 38/157 (24%), Gaps = 23/157 (14%)
Query: 85 FGEGDIVGVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQLECMKHNK-HSNIIA 143
G + + + L E + V +
Sbjct: 195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR 254
Query: 144 TGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVA 203
G N L+ +DL +I + P ++ + V
Sbjct: 255 AFGAYNVLESFDLEKNASIKR-------------------VPLPHSYYSVNVSTDGSTVW 295
Query: 204 VCSKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITT 240
+ G + YD + +VD+P A + +
Sbjct: 296 LGGALGDLAAYDAE---TLEKKGQVDLPGNASMSLAS 329
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 30.1 bits (67), Expect = 0.59
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 189 WVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDI---PDVALSCITTTNQSH 245
V+ + + V + G V + D + V ++ I + +
Sbjct: 63 AVHISRLSASGRYLFVIGRDGKVNMIDLW-MKEPTTVAEIKIGSEARSIETSKMEGWEDK 121
Query: 246 YVIVGSTTGDMMAV 259
Y I G+ +
Sbjct: 122 YAIAGAYWPPQYVI 135
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain
{Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 571
Score = 29.1 bits (64), Expect = 1.2
Identities = 32/268 (11%), Positives = 64/268 (23%), Gaps = 20/268 (7%)
Query: 71 DTDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYKTEPDQWTNFNVGPQL 130
+ + + + E G +++ I + W Y+ P +F Q+
Sbjct: 245 KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQM 304
Query: 131 ECMKHNKHSNI---IATGGKENDLKLWDLNTTKNIFSAKNV------------SHRVLVY 175
+ + ++ + L + I + K + +
Sbjct: 305 VLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRD 364
Query: 176 SVKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVAL 235
D + N + + + I P +
Sbjct: 365 PEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF 424
Query: 236 SCIT-TTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYK-GFAGCVKDIACPLNENLILSV 293
T G + A DL GK + FA + L+
Sbjct: 425 VGATLAMYPGPNGPTKKEMGQIRAFDLT-TGKAKWTKWEKFAAWGGTLYTK--GGLVWYA 481
Query: 294 SLDRHFRVHDFHSKKLLRKDYMQSRLTS 321
+LD + + D K L M S
Sbjct: 482 TLDGYLKALDNKDGKELWNFKMPSGGIG 509
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 28.6 bits (62), Expect = 1.5
Identities = 17/135 (12%), Positives = 33/135 (24%), Gaps = 13/135 (9%)
Query: 59 LIAYSGQKIKIYDTDFKNFNTNTDVSFGEGDIVGVSRYDECILTAVKSGDVKLWRYKTEP 118
I S K + G V+ + + WR+KT
Sbjct: 220 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS 279
Query: 119 DQWTNFNV--GPQLECMKHNKH-----------SNIIATGGKENDLKLWDLNTTKNIFSA 165
+ G +L + + A + L + D + + + S
Sbjct: 280 RFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 339
Query: 166 KNVSHRVLVYSVKPD 180
+ H V +
Sbjct: 340 NQLGHGPQVITTADM 354
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 28.3 bits (62), Expect = 1.7
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 385 IEIVDEIDNDE--------DKQDESEEDGEEEGEEEASENEYYTETDEDEKENEEDDGES 436
+E + ++ +E D + E+ + D+DE E+EED +
Sbjct: 33 LEQYNRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDD 92
Query: 437 D 437
Sbjct: 93 S 93
Score = 27.9 bits (61), Expect = 2.4
Identities = 5/51 (9%), Positives = 22/51 (43%)
Query: 386 EIVDEIDNDEDKQDESEEDGEEEGEEEASENEYYTETDEDEKENEEDDGES 436
+++ + ++D + E + + + DE++ +++ D ++
Sbjct: 48 DLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDN 98
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 28.4 bits (63), Expect = 1.8
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 379 YDDESDIEIVDEIDNDEDKQDESEEDGEEEGEEEASENEYYTETDEDEKENEE 431
++ S I I + ++ + +E E E E +E ++ E+E +
Sbjct: 63 WEQRSRI-ISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
>d1pv5a_ d.251.1.1 (A:) Hypothetical protein YwqG {Bacillus subtilis
[TaxId: 1423]}
Length = 261
Score = 28.1 bits (62), Expect = 1.8
Identities = 17/71 (23%), Positives = 30/71 (42%)
Query: 326 SDFSLENETKKEEQEHSEEKGDSDEKYDPEHFEMNQVTRENYAESKTNKNTSDYDDESDI 385
+DF E T E E + G+ +E E E + S T + +Y +
Sbjct: 156 TDFQFEQYTGMETMEFFGQFGEDEEDIYNELAENGFGHKIGGYASFTQHDPREYAYKEHT 215
Query: 386 EIVDEIDNDED 396
++ +ID+D+D
Sbjct: 216 IMLLQIDSDDD 226
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Length = 85
Score = 26.6 bits (59), Expect = 2.0
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 371 KTNKNTSDYDDESDIEIVDEIDNDEDKQDESEEDGEEEGEEEASENE------YYTETDE 424
+ + SDY + +I+++I N E DE ++D E +E+ YY E +
Sbjct: 2 ELKNSISDYTETEFKKIIEDIINCEG--DEKKQDDNLEHFISVTEHPSGSDLIYYPEGNN 59
Query: 425 D 425
D
Sbjct: 60 D 60
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 27.8 bits (61), Expect = 3.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 383 SDIEIVDEIDNDEDKQDESEEDGEEEGEEEASENEYYTETDEDEKEN 429
+ IE ++ I N + E E EEGE E +Y E D+ +E
Sbjct: 30 AKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQEL 76
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 26.8 bits (59), Expect = 3.3
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 337 EEQEHSEEKGDSDEKYDPEHFEMNQVTRENY---AESKTNKNTSDYDDESDIEIVDEIDN 393
+++ + K D KY+ + E + +T D+ +I+ D D+
Sbjct: 79 GLRDYQDNKADVILKYNAD--EARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDD 136
Query: 394 DEDKQD 399
DED D
Sbjct: 137 DEDIDD 142
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 27.5 bits (59), Expect = 3.5
Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 17/138 (12%)
Query: 141 IIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSD 200
+ + + +W+LN + + V P V + P+
Sbjct: 6 VYIASPESQQIHVWNLNHEGALTLTQVVDV----------------PGQVQPMVVSPDKR 49
Query: 201 KVAVC-SKQGYVRVYDPKITTQRRPVLKVDIPDVALSCITTTNQSHYVIVGSTTGDMMAV 259
+ V + V Y +L+ I+T +Q +V VGS ++V
Sbjct: 50 YLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109
Query: 260 DLRGKGKPCYKYKGFAGC 277
G P G
Sbjct: 110 TRLEDGLPVGVVDVVEGL 127
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 27.2 bits (58), Expect = 4.2
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 7/38 (18%)
Query: 140 NIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSV 177
N + +G + + W ++ H L+ S+
Sbjct: 22 NPLISGSYDGRIMEWSSSSMHQ-------DHSNLIVSL 52
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 27.1 bits (58), Expect = 4.3
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 20/75 (26%)
Query: 144 TGGKENDLKLWDLNTTKNIFSAKNVSHRVLVYSVKPDEFDLRRPVWVNGISFLPNSDKVA 203
+ +++ + D+ + K V+ + V S G P+ KV
Sbjct: 7 ANSESDNISVIDVTSNK-------VTATIPVGS------------NPMGAVISPDGTKVY 47
Query: 204 V-CSKQGYVRVYDPK 217
V + V + D
Sbjct: 48 VANAHSNDVSIIDTA 62
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis
[TaxId: 1358]}
Length = 340
Score = 26.3 bits (57), Expect = 7.3
Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 11/159 (6%)
Query: 120 QWTNFNVGPQLECMKHNKHSNIIATGGKENDLKLWDLNTTKNIFSAKNVSHRVL---VYS 176
+ + + + G ++ L + F ++ +
Sbjct: 151 KIHYEAISDKDTVFNPTGNVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVD 210
Query: 177 VKPDEFDLRRPVWVNGISFLPNSDKVAVCSKQGYVRVYDPKITTQRRPVLKVDIPDVALS 236
+K + D R+ +S NS+ V +G + + ++ + D ++S
Sbjct: 211 IKNTDLDFRQEK---QLSNAFNSNMEQVQLVKGIDHPFLLDQLGLDKEQARLTLDDTSIS 267
Query: 237 CITTTNQSHYVIVGSTTGDMMAVDLRGKGKPCYKYKGFA 275
T+Q VI T + + K + G
Sbjct: 268 V--FTDQPSIVI---FTANFGDLGTLYHEKKQVHHGGIT 301
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.131 0.379
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,645,958
Number of extensions: 77345
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 74
Length of query: 444
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 356
Effective length of database: 1,199,356
Effective search space: 426970736
Effective search space used: 426970736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.0 bits)