BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8153
         (193 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
           With Jdtic
 pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
           With Jdtic
          Length = 480

 Score = 28.9 bits (63), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 119 LMIRICIFSVLYTVPAVLVIVCY 141
           L ++IC+F   + +P +++IVCY
Sbjct: 187 LFMKICVFIFAFVIPVLIIIVCY 209


>pdb|2CSE|A Chain A, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
 pdb|2CSE|B Chain B, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
 pdb|2CSE|C Chain C, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
 pdb|2CSE|P Chain P, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
 pdb|2CSE|Q Chain Q, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
 pdb|2CSE|R Chain R, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
 pdb|2CSE|J Chain J, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
 pdb|2CSE|K Chain K, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
 pdb|2CSE|L Chain L, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
 pdb|2CSE|T Chain T, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
          Length = 708

 Score = 27.7 bits (60), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 42  EELEELQHLP-NPLEGDILTGV-CYVGIWNRQALWDF 76
           E L++L+ L  +P   D+LT V CYVG+  RQAL +F
Sbjct: 123 EFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNF 159


>pdb|1JMU|B Chain B, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
 pdb|1JMU|D Chain D, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
 pdb|1JMU|F Chain F, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
          Length = 666

 Score = 27.7 bits (60), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 42  EELEELQHLP-NPLEGDILTGV-CYVGIWNRQALWDF 76
           E L++L+ L  +P   D+LT V CYVG+  RQAL +F
Sbjct: 81  EFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNF 117


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.142    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,835,935
Number of Sequences: 62578
Number of extensions: 231712
Number of successful extensions: 549
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 6
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)