Query psy8153
Match_columns 193
No_of_seqs 104 out of 195
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 19:58:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01534 Frizzled: Frizzled/Sm 100.0 2.6E-41 5.7E-46 302.6 13.8 119 43-161 149-267 (328)
2 KOG3577|consensus 100.0 2.2E-32 4.9E-37 258.8 -1.8 129 43-189 365-493 (556)
3 PF11188 DUF2975: Protein of u 85.1 11 0.00023 28.4 8.9 68 77-144 21-88 (136)
4 PF10318 7TM_GPCR_Srh: Serpent 81.7 27 0.00058 30.0 10.9 86 61-149 174-265 (302)
5 PF02076 STE3: Pheromone A rec 79.6 11 0.00024 33.7 8.0 90 53-143 129-220 (283)
6 PF06454 DUF1084: Protein of u 78.1 21 0.00045 31.9 9.3 71 73-143 162-232 (281)
7 PF05462 Dicty_CAR: Slime mold 73.2 69 0.0015 29.0 11.4 97 47-147 131-228 (303)
8 PRK12586 putative monovalent c 59.9 54 0.0012 27.1 7.4 77 79-155 10-107 (145)
9 PF11674 DUF3270: Protein of u 58.0 24 0.00051 27.1 4.7 30 111-140 31-62 (90)
10 PRK12587 putative monovalent c 51.9 85 0.0019 25.0 7.1 74 81-154 10-104 (118)
11 PRK12585 putative monovalent c 50.3 1.2E+02 0.0027 26.4 8.3 30 79-108 7-36 (197)
12 PF02046 COX6A: Cytochrome c o 46.6 22 0.00047 28.3 2.9 55 117-174 42-98 (116)
13 PF06836 DUF1240: Protein of u 42.4 69 0.0015 24.7 5.0 55 74-139 11-65 (95)
14 PF01988 VIT1: VIT family; In 40.7 2.2E+02 0.0048 23.9 8.5 30 15-44 59-88 (213)
15 PRK06286 putative monovalent c 40.3 43 0.00092 25.7 3.6 32 77-108 5-36 (91)
16 PF06305 DUF1049: Protein of u 39.5 36 0.00077 23.2 2.9 22 87-108 28-52 (68)
17 COG4298 Uncharacterized protei 38.2 18 0.00039 28.0 1.2 29 83-111 46-74 (95)
18 KOG3249|consensus 35.6 61 0.0013 27.9 4.1 30 71-100 109-138 (181)
19 PF06814 Lung_7-TM_R: Lung sev 35.6 2.1E+02 0.0046 25.0 7.8 41 73-117 186-226 (295)
20 TIGR00869 sec62 protein transl 35.1 2.1E+02 0.0045 25.5 7.6 22 54-75 102-123 (232)
21 PF06653 Claudin_3: Tight junc 34.9 2.5E+02 0.0054 22.8 8.5 82 55-142 35-116 (163)
22 PF10192 GpcrRhopsn4: Rhodopsi 33.7 2.8E+02 0.0061 23.9 8.1 64 68-142 168-233 (257)
23 PF13314 DUF4083: Domain of un 33.2 1.2E+02 0.0025 21.8 4.6 6 102-107 27-32 (58)
24 KOG2927|consensus 30.7 1.9E+02 0.0042 27.5 6.9 31 54-88 173-203 (372)
25 PF10327 7TM_GPCR_Sri: Serpent 30.2 2.7E+02 0.0058 24.7 7.6 54 99-153 220-275 (303)
26 PRK12592 putative monovalent c 30.0 1.8E+02 0.0039 23.4 5.9 41 77-117 7-49 (126)
27 PRK12674 putative monovalent c 29.2 2.6E+02 0.0056 21.3 7.2 28 81-108 7-34 (99)
28 PF14362 DUF4407: Domain of un 28.5 2.5E+02 0.0054 24.6 7.0 35 29-65 3-37 (301)
29 PF03263 Cucumo_2B: Cucumoviru 27.8 21 0.00045 28.2 0.1 32 32-65 35-67 (103)
30 PHA02655 hypothetical protein; 27.8 67 0.0015 24.4 2.8 30 114-144 53-83 (94)
31 PF09930 DUF2162: Predicted tr 27.4 2.1E+02 0.0046 25.1 6.3 36 114-154 57-92 (224)
32 PRK12675 putative monovalent c 27.1 1.4E+02 0.0029 23.3 4.5 27 82-108 4-30 (104)
33 PF12271 Chs3p: Chitin synthas 26.2 2.8E+02 0.0061 25.5 7.0 52 86-145 157-208 (293)
34 PF00002 7tm_2: 7 transmembran 26.0 23 0.00049 29.2 0.0 42 61-104 141-182 (242)
35 PF10317 7TM_GPCR_Srd: Serpent 25.8 4.4E+02 0.0095 22.8 10.0 55 96-152 197-256 (292)
36 KOG2568|consensus 25.6 5.1E+02 0.011 25.8 9.1 33 66-101 330-364 (518)
37 PF14927 Neurensin: Neurensin 25.4 74 0.0016 26.2 2.9 17 84-100 47-63 (140)
38 COG5056 ARE1 Acyl-CoA choleste 24.4 7E+02 0.015 24.8 9.6 78 64-141 270-378 (512)
39 PF07086 DUF1352: Protein of u 24.2 3.1E+02 0.0066 23.5 6.5 39 85-132 78-116 (186)
40 PRK12671 putative monovalent c 24.1 3.8E+02 0.0083 21.5 8.5 35 74-108 8-42 (120)
41 PF12996 DUF3880: DUF based on 23.7 44 0.00096 23.9 1.2 54 8-69 23-77 (79)
42 TIGR00911 2A0308 L-type amino 23.3 4E+02 0.0088 24.8 7.7 76 30-110 30-108 (501)
43 KOG4193|consensus 22.9 3E+02 0.0066 27.6 7.1 48 60-109 459-506 (610)
44 PF07332 DUF1469: Protein of u 22.5 2.5E+02 0.0055 21.0 5.2 30 79-108 70-99 (121)
45 COG4795 PulJ Type II secretory 22.5 1.3E+02 0.0028 25.9 4.0 45 75-119 8-52 (194)
46 PRK12670 putative monovalent c 22.5 1.8E+02 0.004 22.3 4.4 27 82-108 7-33 (99)
47 KOG0380|consensus 22.3 3.6E+02 0.0078 26.8 7.4 75 68-146 277-371 (523)
48 PF00001 7tm_1: 7 transmembran 21.2 3.9E+02 0.0084 20.5 11.1 12 60-71 133-144 (257)
49 KOG1311|consensus 20.7 5.7E+02 0.012 22.3 8.5 78 60-143 147-227 (299)
No 1
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=100.00 E-value=2.6e-41 Score=302.57 Aligned_cols=119 Identities=54% Similarity=0.895 Sum_probs=116.7
Q ss_pred HHHHHHhhcCCccCCcccceEEeecCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccchhHHHHHHH
Q psy8153 43 ELEELQHLPNPLEGDILTGVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIR 122 (193)
Q Consensus 43 ~~~~~~L~l~~VDGDeLTGICfVGn~n~~aL~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~~~~t~KLeklM~R 122 (193)
.+++++|++++|||||+||+|||||+|++++++||++|+++||++|++||++|+++|+|||+.+|+++++++|+||+|.|
T Consensus 149 ~~ti~vL~~~~VdgD~ltGiC~Vg~~~~~~l~~fvl~Pl~i~l~iG~~fL~~G~~~l~rir~~~~~~~~~~~Kl~klm~R 228 (328)
T PF01534_consen 149 VLTIAVLALRKVDGDELTGICFVGNQNPSALRGFVLAPLFIYLLIGTVFLLAGFVSLFRIRRSMKHDGTKTSKLEKLMIR 228 (328)
T ss_pred HHHHHHHHhcccccccccceeEEeCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcccccchhhHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhChhhHhhhhhccCCC
Q psy8153 123 ICIFSVLYTVPAVLVIVCYLYEFVYIDYWMLTWHVDMCS 161 (193)
Q Consensus 123 IGIFsvLY~vPa~ivi~C~~YE~~nr~~W~~s~~~~~C~ 161 (193)
||+|+++|++|++++++||+||+.|++.|++++++.+|.
T Consensus 229 iGiFsvly~vp~~~~i~c~~YE~~~~~~W~~~~~~~~c~ 267 (328)
T PF01534_consen 229 IGIFSVLYLVPALIVIACHFYEYSNRPQWEESWRDYNCC 267 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcccCcCC
Confidence 999999999999999999999999999999999998888
No 2
>KOG3577|consensus
Probab=99.97 E-value=2.2e-32 Score=258.85 Aligned_cols=129 Identities=52% Similarity=0.906 Sum_probs=123.6
Q ss_pred HHHHHHhhcCCccCCcccceEEeecCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccchhHHHHHHH
Q psy8153 43 ELEELQHLPNPLEGDILTGVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIR 122 (193)
Q Consensus 43 ~~~~~~L~l~~VDGDeLTGICfVGn~n~~aL~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~~~~t~KLeklM~R 122 (193)
-.++++|++++||||+++|+|||||.|++++++||++|+++|+++|..||++|+++|+|+|+++|+++++++||+|+|.|
T Consensus 365 ~~ti~~l~~~~v~~~~~~giC~vG~~~~~~~~~fvl~pl~~~l~ig~~~l~~G~~~l~~~r~~~k~~~~~~~kl~~~m~~ 444 (556)
T KOG3577|consen 365 VQTILILALNKVDGDELSGICFVGNSNPDALRGFVLAPLFLYLIIGTLFLLAGFVSLFRIRSSIKLSGTCTDKLEKLMVR 444 (556)
T ss_pred HHHHHHHHHHHhcccceeEEEecCCCCcchhceeeecchhhhhhHHHHHHHHHHHHHhcccccccCCccchHHHHHHHHh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhChhhHhhhhhccCCCCCCccCcCCCCCccccCceeeccCCCCC
Q psy8153 123 ICIFSVLYTVPAVLVIVCYLYEFVYIDYWMLTWHVDMCSGTSSVSSLSKPMTSSYNNIYSIPCPMGL 189 (193)
Q Consensus 123 IGIFsvLY~vPa~ivi~C~~YE~~nr~~W~~s~~~~~C~~~s~~~~~~~p~~~~~~~~~~~pcp~~~ 189 (193)
||+|++||++|+.++++|++||+.|++.|+.+|++..|. .+++|||...
T Consensus 445 iGifs~Ly~~p~~~~~~c~~ye~~~~~~w~~~~~~~~~~------------------~~~~~~~~~~ 493 (556)
T KOG3577|consen 445 IGIFSALYTVPALIVIACYFYEQANADSWEGSWEQDCCK------------------IVSFPCPGTA 493 (556)
T ss_pred cCcceEEEeecceEEEeeEeehhhcccchhhhhhhccce------------------eeccCCcchh
Confidence 999999999999999999999999999999999998888 6678888754
No 3
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=85.14 E-value=11 Score=28.45 Aligned_cols=68 Identities=12% Similarity=0.175 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8153 77 VIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVPAVLVIVCYLYE 144 (193)
Q Consensus 77 VL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~~~~t~KLeklM~RIGIFsvLY~vPa~ivi~C~~YE 144 (193)
.-.|..++.+++.......++.+.|+-+..++++.=+++.-|.+.++|...+.+.+...+.-.+..+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~~~ll~~i~~~~~Fs~~n~~~l~~ig~~~l~~~~~~~~~~~~~~~~ 88 (136)
T PF11188_consen 21 AYWPFLLIGLLVLLLILIALYQLRRLLRNIQKGKPFSPENIRRLRRIGWLLLIISILSFIANFILNYI 88 (136)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777777777777777777666666666677888889999999888887666665555444
No 4
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=81.68 E-value=27 Score=30.02 Aligned_cols=86 Identities=17% Similarity=0.271 Sum_probs=49.5
Q ss_pred ceEEeecCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cCCccchhHHH-----HHHHHHHHHHHHHHHH
Q psy8153 61 GVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMK-HDGTKTDKLEK-----LMIRICIFSVLYTVPA 134 (193)
Q Consensus 61 GICfVGn~n~~aL~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k-~~~~~t~KLek-----lM~RIGIFsvLY~vPa 134 (193)
--++|=..|... .............+......+. +..++++..| +.-.+|.|++| +...+.+..++..+|.
T Consensus 174 ~~~fv~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~-~~~~l~~~~~~~~S~~T~k~Qkkfl~~l~iQ~~ip~~~l~~P~ 250 (302)
T PF10318_consen 174 PPVFVLSTDSWY--ILIIIIIFLLIIFIQIIFFAFL-IIYYLLKSQKKTMSKKTRKMQKKFLIALIIQVLIPFIFLFIPL 250 (302)
T ss_pred CCeEEEcCCchH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhchhhhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 445666665542 2333333333333333333332 2333444433 22245666554 6678999999999999
Q ss_pred HHHHHHHHHhhhChh
Q psy8153 135 VLVIVCYLYEFVYID 149 (193)
Q Consensus 135 ~ivi~C~~YE~~nr~ 149 (193)
...+.....++.|+.
T Consensus 251 ~~~~~~~~~~~~~q~ 265 (302)
T PF10318_consen 251 IYFIISIIFGYYNQA 265 (302)
T ss_pred HHHHHHHhccccccc
Confidence 999999988877743
No 5
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=79.56 E-value=11 Score=33.75 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=66.2
Q ss_pred CccCCcccceEEeecCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccc-hhHH-HHHHHHHHHHHHH
Q psy8153 53 PLEGDILTGVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKT-DKLE-KLMIRICIFSVLY 130 (193)
Q Consensus 53 ~VDGDeLTGICfVGn~n~~aL~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~~~~t-~KLe-klM~RIGIFsvLY 130 (193)
+=|=-|..| |.-...+...-..++.+|-.+.-+++.++-...+..+.|-|++.++--.++ +.+. +--.|...+++..
T Consensus 129 Rf~I~e~~G-C~~~~~~s~~~~~l~~iwp~i~~lia~vYa~lt~~~f~~rr~~f~~~l~~s~s~l~~~Rf~RL~~la~~~ 207 (283)
T PF02076_consen 129 RFDIVEDVG-CYPAIYPSWPTIFLFIIWPPIFSLIAAVYAILTLRRFIRRRKQFRDILSSSNSGLNTSRFFRLLALALVI 207 (283)
T ss_pred ceeEecccC-CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 345555666 777777777777888889999999999999999999999999887532111 2221 2235888899888
Q ss_pred HHHHHHHHHHHHH
Q psy8153 131 TVPAVLVIVCYLY 143 (193)
Q Consensus 131 ~vPa~ivi~C~~Y 143 (193)
+++.+-+-...++
T Consensus 208 i~~~~P~~i~~~v 220 (283)
T PF02076_consen 208 ILIYLPLSIYYLV 220 (283)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777777776
No 6
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=78.06 E-value=21 Score=31.92 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8153 73 LWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVPAVLVIVCYLY 143 (193)
Q Consensus 73 L~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~~~~t~KLeklM~RIGIFsvLY~vPa~ivi~C~~Y 143 (193)
.......--.+.+++|+.|+.-|.-.-.++|+.-.+...+.+|+.|...=..+-++++++=+++++.-.++
T Consensus 162 ~~i~~~~~A~isli~a~~Fl~YG~~L~~~Lr~~p~~s~~r~kkl~~V~~vt~ic~~cF~ir~i~~~~~~~~ 232 (281)
T PF06454_consen 162 SIIYAIFIAVISLIAALGFLYYGGKLFFKLRRFPIESKGRSKKLRKVGFVTIICSVCFLIRCIMVLFSAFD 232 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455566788899999999999999999998644433444555554333333444555555554443333
No 7
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=73.21 E-value=69 Score=28.96 Aligned_cols=97 Identities=14% Similarity=0.261 Sum_probs=51.5
Q ss_pred HHhhcCCccCCcccceEEeecCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC-ccchhHHHHHHHHHH
Q psy8153 47 LQHLPNPLEGDILTGVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDG-TKTDKLEKLMIRICI 125 (193)
Q Consensus 47 ~~L~l~~VDGDeLTGICfVGn~n~~aL~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~~-~~t~KLeklM~RIGI 125 (193)
.++.. .-+.++..+-|-+.+.....+.+..-+|+.+.+.+..++ .|+.. ....+..+... ...+|.-+...|+..
T Consensus 131 ~i~l~-~~~~g~~G~WCWI~~~~~~~r~~lfY~Pl~ii~~~~~il--v~i~~-~~~y~~~~~~~sd~~~~~~~~~~kL~~ 206 (303)
T PF05462_consen 131 VIPLI-GNDYGPAGNWCWIKPEWDVWRFALFYIPLWIIIIISAIL--VGITM-RYIYRVIRNGVSDNKDKHLKYQLKLVN 206 (303)
T ss_pred HHHHH-ccCCCCCCCceeecCCCcchHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHccccchhHHHHHHHHHHHHH
Confidence 34433 335667788999988765555567779987766655443 23332 22222222211 122332334456666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhC
Q psy8153 126 FSVLYTVPAVLVIVCYLYEFVY 147 (193)
Q Consensus 126 FsvLY~vPa~ivi~C~~YE~~n 147 (193)
|-+.+++-.+..++=.+|+..+
T Consensus 207 Yp~ifiicw~fa~INRI~~~~~ 228 (303)
T PF05462_consen 207 YPLIFIICWIFATINRIYNFIG 228 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 6666665555555555555443
No 8
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=59.87 E-value=54 Score=27.14 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC--ccchhHHHHHH-----------------H--HHHHHHHHHHHHHHH
Q psy8153 79 IPLSIYLILGLVFLFTGFISLLRIRTIMKHDG--TKTDKLEKLMI-----------------R--ICIFSVLYTVPAVLV 137 (193)
Q Consensus 79 ~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~~--~~t~KLeklM~-----------------R--IGIFsvLY~vPa~iv 137 (193)
+-..+++++|.+|.+.|-+-++|.++...+-. ++++-+.-.++ | +.++-++.+.|+..-
T Consensus 10 il~~ill~lG~~f~ligaIGllRfPD~ytRlHAatKa~TlG~~liLlg~~l~~~~~~~~~~~k~lLii~fl~lTaPVaah 89 (145)
T PRK12586 10 LIAAIMILLGSIIALISAIGIVKFQDVFLRSHAATKSSTLSVLLTLIGVLIYFIVNTGFFSVRLLLSLVFINLTSPVGMH 89 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHccccccchhhHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999998865432 33333322222 1 223445556666666
Q ss_pred HHHHHHhhhChhhHhhhh
Q psy8153 138 IVCYLYEFVYIDYWMLTW 155 (193)
Q Consensus 138 i~C~~YE~~nr~~W~~s~ 155 (193)
+..----+...+.|+.+-
T Consensus 90 ~iaRAayr~g~~~~~~~~ 107 (145)
T PRK12586 90 LIARAAYRNGAYMYRKND 107 (145)
T ss_pred HHHHHHHHcCCCCCCCcc
Confidence 655555556667777653
No 9
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=58.04 E-value=24 Score=27.12 Aligned_cols=30 Identities=17% Similarity=0.383 Sum_probs=23.8
Q ss_pred ccchhHHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy8153 111 TKTDKLEKLM--IRICIFSVLYTVPAVLVIVC 140 (193)
Q Consensus 111 ~~t~KLeklM--~RIGIFsvLY~vPa~ivi~C 140 (193)
....||++++ .||++|+++-++.+.+.++.
T Consensus 31 ~~~~kL~ELlFF~nIA~FcI~tvlfsFvfLs~ 62 (90)
T PF11674_consen 31 QSSAKLKELLFFANIAFFCIFTVLFSFVFLSL 62 (90)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566999876 49999999988887777765
No 10
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=51.90 E-value=85 Score=24.99 Aligned_cols=74 Identities=22% Similarity=0.228 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcccCC--ccchhHHHHHHHH-------------------HHHHHHHHHHHHHHHH
Q psy8153 81 LSIYLILGLVFLFTGFISLLRIRTIMKHDG--TKTDKLEKLMIRI-------------------CIFSVLYTVPAVLVIV 139 (193)
Q Consensus 81 L~VyLlvG~~FLl~GfvsL~RIR~~~k~~~--~~t~KLeklM~RI-------------------GIFsvLY~vPa~ivi~ 139 (193)
..+++++|..|.+.|-+-++|..+...+-+ ++++-+.-.++=+ .++-++.+.|+..-..
T Consensus 10 ~~ill~~G~~~~ligaiGllR~PD~y~RlHAatk~~TlG~~lil~g~~l~~~~~~~~~~~k~ll~~~f~~lT~Pvaah~i 89 (118)
T PRK12587 10 ALIFVIIGALISALAAIGLLRLEDVYSRAHAAGKASTLGAMSLLFGTFLYFIATQGYVNMQLIVGIIFVLITGPLSSHMI 89 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHhhhchhhhHhhHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999999988865432 3333333222222 2333344555555544
Q ss_pred HHHHhhhChhhHhhh
Q psy8153 140 CYLYEFVYIDYWMLT 154 (193)
Q Consensus 140 C~~YE~~nr~~W~~s 154 (193)
.----+...+.|+..
T Consensus 90 aRAa~~~g~~~~~~~ 104 (118)
T PRK12587 90 MKAAYNIKTPYTKKT 104 (118)
T ss_pred HHHHHHcCCCCCCcc
Confidence 444445566667665
No 11
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=50.35 E-value=1.2e+02 Score=26.44 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy8153 79 IPLSIYLILGLVFLFTGFISLLRIRTIMKH 108 (193)
Q Consensus 79 ~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~ 108 (193)
+-..+++++|++|.+.|-+.++|..+....
T Consensus 7 iI~~vLLliG~~f~ligaIGLlRfPD~YtR 36 (197)
T PRK12585 7 IIISIMILIGGLLSILAAIGVIRLPDVYTR 36 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 345678899999999999999999888654
No 12
>PF02046 COX6A: Cytochrome c oxidase subunit VIa; InterPro: IPR001349 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as VIa in vertebrates and fungi. Mammals have two tissue-specific isoforms of VIa, a liver and a heart form. Only one form is found in fish [].; GO: 0004129 cytochrome-c oxidase activity, 0005743 mitochondrial inner membrane, 0005751 mitochondrial respiratory chain complex IV; PDB: 2DYR_G 2EIM_G 2Y69_T 1OCC_G 3AG4_G 3AG2_G 3ASN_G 3ABL_G 1V55_T 2EIJ_T ....
Probab=46.62 E-value=22 Score=28.29 Aligned_cols=55 Identities=18% Similarity=0.116 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhChhhHhhhhhccCCCCCCccCcCCCCCc
Q psy8153 117 EKLMIRICIFSVLYTVPAVLVIVCYLY--EFVYIDYWMLTWHVDMCSGTSSVSSLSKPMT 174 (193)
Q Consensus 117 eklM~RIGIFsvLY~vPa~ivi~C~~Y--E~~nr~~W~~s~~~~~C~~~s~~~~~~~p~~ 174 (193)
.++-.+| |++..+|++++.+++.| |..+.+.|+-.-...-...-++..+++||.|
T Consensus 42 ~~~Wk~i---S~~v~iP~i~l~~~n~~~l~~~H~eH~~h~~~~pe~~~Y~yl~iR~K~FP 98 (116)
T PF02046_consen 42 AKLWKKI---SFFVAIPAIALCMLNAYYLEKEHHEHREHLPERPEFVPYPYLRIRTKPFP 98 (116)
T ss_dssp HHHHHHH---HHHTHHHHHHHHHHHHH-HSTS-----------------TTSS--SS--S
T ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCCCCccceecCCCCC
Confidence 4555566 34456899999999888 3334344332211123333468888899876
No 13
>PF06836 DUF1240: Protein of unknown function (DUF1240); InterPro: IPR010665 This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.
Probab=42.39 E-value=69 Score=24.66 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8153 74 WDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVPAVLVIV 139 (193)
Q Consensus 74 ~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~~~~t~KLeklM~RIGIFsvLY~vPa~ivi~ 139 (193)
..+--.|+++|..+..++.. ++=| ..+..+|+.+.+..+.++++....|....+.
T Consensus 11 i~~~~~Pll~Y~~~~~~~~~------i~~~-----~~k~n~~i~~~l~~i~I~~~IlS~~~SfYv~ 65 (95)
T PF06836_consen 11 ILIFSSPLLFYFSYLSFFSF------IKNK-----PPKFNNKIVKYLAIIAIISFILSFFFSFYVD 65 (95)
T ss_pred hhhhhHHHHHHHHHHHHHHh------hcCC-----CchhHHHHHHHHHHHHHHHHHHHhHhheeEe
Confidence 35566898888766554332 2111 2244567788888888888888887776543
No 14
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=40.67 E-value=2.2e+02 Score=23.93 Aligned_cols=30 Identities=37% Similarity=0.486 Sum_probs=21.6
Q ss_pred hhHHhhhcchhhhhhhhcCchhhhhhHHHH
Q psy8153 15 ERLLRTGVRSRHWLELLEDPSEQRSKLEEL 44 (193)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (193)
||-.....+.|...|+-+||.++|.++.+.
T Consensus 59 e~~~~~~e~~re~~e~~~~pe~e~~el~~i 88 (213)
T PF01988_consen 59 ERDLYEAEREREEWELENNPEEEKEELVEI 88 (213)
T ss_pred hhhHHHHHhHHHHHHHHhChHhHHHHHHHH
Confidence 344445567778889999999998866543
No 15
>PRK06286 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=40.28 E-value=43 Score=25.73 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy8153 77 VIIPLSIYLILGLVFLFTGFISLLRIRTIMKH 108 (193)
Q Consensus 77 VL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~ 108 (193)
+-....+++++|..|.+.|-+-+.|..+.+|+
T Consensus 5 ~~ii~~illiiG~~f~l~gaiGllRlPD~~~~ 36 (91)
T PRK06286 5 VGIIQDILLIIASIGILIASIRLWRVEKDRKN 36 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeCCCcccc
Confidence 44566788999999999999999999996665
No 16
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=39.52 E-value=36 Score=23.20 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH---Hhhhhhccc
Q psy8153 87 LGLVFLFTGFISL---LRIRTIMKH 108 (193)
Q Consensus 87 vG~~FLl~GfvsL---~RIR~~~k~ 108 (193)
++..+++.+++++ .|.|...+.
T Consensus 28 f~~G~llg~l~~~~~~~~~r~~~~~ 52 (68)
T PF06305_consen 28 FLLGALLGWLLSLPSRLRLRRRIRR 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 444555554
No 17
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.20 E-value=18 Score=28.03 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCc
Q psy8153 83 IYLILGLVFLFTGFISLLRIRTIMKHDGT 111 (193)
Q Consensus 83 VyLlvG~~FLl~GfvsL~RIR~~~k~~~~ 111 (193)
-|+.+|+.|+..-.+.|.|-|+..+...+
T Consensus 46 Gy~~MG~lfltgSt~tL~K~~rD~he~~r 74 (95)
T COG4298 46 GYWAMGILFLTGSTVTLVKYRRDEHESAR 74 (95)
T ss_pred HHHHHHHHHHhcchhhhhHHhhhHHHHHH
Confidence 37889999999999999999888766443
No 18
>KOG3249|consensus
Probab=35.64 E-value=61 Score=27.88 Aligned_cols=30 Identities=33% Similarity=0.593 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8153 71 QALWDFVIIPLSIYLILGLVFLFTGFISLL 100 (193)
Q Consensus 71 ~aL~gFVL~PL~VyLlvG~~FLl~GfvsL~ 100 (193)
..+.+||++|+++=+-.|.+|++.-.++.+
T Consensus 109 ~vllW~vL~~ia~~l~fGlvff~lSlf~~i 138 (181)
T KOG3249|consen 109 IVLLWFVLAPIAHRLDFGLVFFLLSLFSII 138 (181)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 568899999999999999999886665544
No 19
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=35.59 E-value=2.1e+02 Score=24.95 Aligned_cols=41 Identities=32% Similarity=0.381 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccchhHH
Q psy8153 73 LWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLE 117 (193)
Q Consensus 73 L~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~~~~t~KLe 117 (193)
...|.++|+++.. .+|+..-+.+|.+-.+..|. .++..|++
T Consensus 186 ~~~~~~~~l~~~~---~~~~~wi~~sL~~t~~~lk~-~~q~~KL~ 226 (295)
T PF06814_consen 186 NFIFFLLPLCILD---LFFIVWIFRSLSKTIRDLKA-RRQTAKLS 226 (295)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5678888983332 23555556666654444443 34566665
No 20
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=35.12 E-value=2.1e+02 Score=25.47 Aligned_cols=22 Identities=18% Similarity=-0.076 Sum_probs=10.9
Q ss_pred ccCCcccceEEeecCChhhhhH
Q psy8153 54 LEGDILTGVCYVGIWNRQALWD 75 (193)
Q Consensus 54 VDGDeLTGICfVGn~n~~aL~g 75 (193)
-|.|+.=..=|-|++-...+.+
T Consensus 102 Fd~d~~YvW~ye~~~~~~~l~~ 123 (232)
T TIGR00869 102 FEDDMYYVWNYNPRPYMDYLIV 123 (232)
T ss_pred cCCCceEEEEecCCcHHHHHHH
Confidence 3556655555555444444333
No 21
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=34.86 E-value=2.5e+02 Score=22.81 Aligned_cols=82 Identities=17% Similarity=0.285 Sum_probs=52.7
Q ss_pred cCCcccceEEeecCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHH
Q psy8153 55 EGDILTGVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVPA 134 (193)
Q Consensus 55 DGDeLTGICfVGn~n~~aL~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~~~~t~KLeklM~RIGIFsvLY~vPa 134 (193)
+.++-.|| |-... ....++..++...|+.++..++...+.... .++..++ ....+.++...=+.+++++.++..
T Consensus 35 ~~~~~~GI--vP~~~-~~~~W~~~as~lm~is~~~~~i~i~~~~~~-~~~v~~~--g~~~~~r~~~~~i~~~s~li~il~ 108 (163)
T PF06653_consen 35 KISISIGI--VPYSS-SEPGWFAAASWLMYISFACFIIMIIFYIII-VYKVRKH--GYSCSIRKWFHIISIFSLLIVILT 108 (163)
T ss_pred cccceeeE--EeCCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHH-heeEecc--cccHHHHHHHHHHHHHHHHHHHHH
Confidence 44556676 44444 344699999999999999988877544333 3333332 334455677777888888777766
Q ss_pred HHHHHHHH
Q psy8153 135 VLVIVCYL 142 (193)
Q Consensus 135 ~ivi~C~~ 142 (193)
++.+.-+-
T Consensus 109 ~iavil~a 116 (163)
T PF06653_consen 109 IIAVILFA 116 (163)
T ss_pred HHHheeEE
Confidence 66554443
No 22
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=33.75 E-value=2.8e+02 Score=23.89 Aligned_cols=64 Identities=14% Similarity=0.419 Sum_probs=37.3
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccchhHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q psy8153 68 WNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTV--PAVLVIVCYL 142 (193)
Q Consensus 68 ~n~~aL~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~~~~t~KLeklM~RIGIFsvLY~v--Pa~ivi~C~~ 142 (193)
+..++..|+.++ ++.+++...|+.....+..+- +..+-+++..+.+++..++++ |..+.++-.+
T Consensus 168 ~~y~s~pGy~li--~lri~~~~~F~~~~~~t~~~~---------~~~~k~~Fy~~f~~~~~lWFl~~Pv~~~ia~~v 233 (257)
T PF10192_consen 168 YFYDSWPGYILI--ALRIVLAIWFIYGLYQTISKE---------KDPEKRKFYLPFGIIFSLWFLSLPVIVIIAHFV 233 (257)
T ss_pred eecccHHHHHHH--HHHHHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444556676665 555555555555544433221 222446788888888888765 7765555443
No 23
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=33.24 E-value=1.2e+02 Score=21.80 Aligned_cols=6 Identities=50% Similarity=0.733 Sum_probs=2.6
Q ss_pred hhhhcc
Q psy8153 102 IRTIMK 107 (193)
Q Consensus 102 IR~~~k 107 (193)
||+...
T Consensus 27 IRri~~ 32 (58)
T PF13314_consen 27 IRRILI 32 (58)
T ss_pred HHHHHH
Confidence 444443
No 24
>KOG2927|consensus
Probab=30.74 E-value=1.9e+02 Score=27.49 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=21.3
Q ss_pred ccCCcccceEEeecCChhhhhHHHHHHHHHHHHHH
Q psy8153 54 LEGDILTGVCYVGIWNRQALWDFVIIPLSIYLILG 88 (193)
Q Consensus 54 VDGDeLTGICfVGn~n~~aL~gFVL~PL~VyLlvG 88 (193)
+|||+. ||=+.++..+..++|+=+++...++
T Consensus 173 ~d~de~----YVW~yep~~~~~~vl~~~fvl~tla 203 (372)
T KOG2927|consen 173 QDGDEH----YVWIYEPRPLMWQVLGVLFVLVTLA 203 (372)
T ss_pred cccCce----EEEeccCCchhHHHHHHHHHHHHHH
Confidence 688875 8888888777777766555444443
No 25
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=30.19 E-value=2.7e+02 Score=24.69 Aligned_cols=54 Identities=13% Similarity=0.309 Sum_probs=34.7
Q ss_pred HHhhhhhcccCC--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhhHhh
Q psy8153 99 LLRIRTIMKHDG--TKTDKLEKLMIRICIFSVLYTVPAVLVIVCYLYEFVYIDYWML 153 (193)
Q Consensus 99 L~RIR~~~k~~~--~~t~KLeklM~RIGIFsvLY~vPa~ivi~C~~YE~~nr~~W~~ 153 (193)
|.++|+.+..+. +..+-+..++....+-+++. +|..+.....++|..+....-+
T Consensus 220 L~~~k~~iS~~ty~kHk~av~SLi~Q~~~~~i~~-~P~~~~~~~~~~~~~~~q~i~~ 275 (303)
T PF10327_consen 220 LKKLKKKISKQTYQKHKEAVRSLIAQFATSSICI-LPPFIFVVVVIFEFEDAQVISE 275 (303)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhheecCCCcHHHHH
Confidence 344554444332 12222567888876666666 9999999999998877766544
No 26
>PRK12592 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=30.02 E-value=1.8e+02 Score=23.44 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC--ccchhHH
Q psy8153 77 VIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDG--TKTDKLE 117 (193)
Q Consensus 77 VL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~~--~~t~KLe 117 (193)
.-+-..+++++|..|.+.|-+-++|.++...+-. ++++-+.
T Consensus 7 ~~il~~~lll~G~~f~l~gaiGllRfPD~ytRlHAaTKa~TlG 49 (126)
T PRK12592 7 TDIVSLVFILSGAFLSFSASIGLIRFRDTMSRVHAITKPQTTG 49 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHcccchhhhhHH
Confidence 3445567899999999999999999998876532 4444443
No 27
>PRK12674 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=29.15 E-value=2.6e+02 Score=21.25 Aligned_cols=28 Identities=32% Similarity=0.666 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy8153 81 LSIYLILGLVFLFTGFISLLRIRTIMKH 108 (193)
Q Consensus 81 L~VyLlvG~~FLl~GfvsL~RIR~~~k~ 108 (193)
-.+++++|..|.+.|-+-+.|.++...+
T Consensus 7 ~~~ll~~G~~f~~~gaiGllR~pD~y~R 34 (99)
T PRK12674 7 VSVLLLLGAFFALVGAIGLVRLPDVYTR 34 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 4578899999999999999999887654
No 28
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=28.46 E-value=2.5e+02 Score=24.63 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=25.2
Q ss_pred hhhcCchhhhhhHHHHHHHHhhcCCccCCcccceEEe
Q psy8153 29 ELLEDPSEQRSKLEELEELQHLPNPLEGDILTGVCYV 65 (193)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~L~l~~VDGDeLTGICfV 65 (193)
++|+.+...|+|.-.+-++++.+.-+= -++|-+++
T Consensus 3 ~iL~~~~~er~k~~~~G~~vl~ta~la--~~s~~~a~ 37 (301)
T PF14362_consen 3 DILKRSPAERNKYAGIGAAVLFTALLA--GLSGGYAL 37 (301)
T ss_pred hhHhcChHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 467777778899999988888877665 34555554
No 29
>PF03263 Cucumo_2B: Cucumovirus protein 2B; InterPro: IPR004946 This family of cucumovirus proteins may be long-distance movement proteins. ; PDB: 2ZI0_B 3CZ3_C.
Probab=27.84 E-value=21 Score=28.21 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=14.2
Q ss_pred cCchhhh-hhHHHHHHHHhhcCCccCCcccceEEe
Q psy8153 32 EDPSEQR-SKLEELEELQHLPNPLEGDILTGVCYV 65 (193)
Q Consensus 32 ~~~~~~~-~~~~~~~~~~L~l~~VDGDeLTGICfV 65 (193)
..|||++ |.+-.| ..|=+-+||+++++|.|.-
T Consensus 35 KSPSEr~Rs~lrlf--~~LPf~~vd~~~l~~~~~~ 67 (103)
T PF03263_consen 35 KSPSERARSELRLF--RFLPFYQVDGSELPGMCRH 67 (103)
T ss_dssp --HHHHHHHHHHHH--HHHCHHHHHS---------
T ss_pred CCHHHHHHHHHHHH--HhCCccccCCccccccccc
Confidence 5799874 555533 3455689999999998754
No 30
>PHA02655 hypothetical protein; Provisional
Probab=27.81 E-value=67 Score=24.36 Aligned_cols=30 Identities=23% Similarity=0.644 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q psy8153 114 DKLEKLMIRICIFSVLYTVP-AVLVIVCYLYE 144 (193)
Q Consensus 114 ~KLeklM~RIGIFsvLY~vP-a~ivi~C~~YE 144 (193)
-|-+-.|.|..+|.+ |++| +.+++.|.|.-
T Consensus 53 iknqytmlkfvvfti-ylipfvivmisciflv 83 (94)
T PHA02655 53 IKNQYTMLKFVVFTI-YLIPFVIVMISCIFLV 83 (94)
T ss_pred Hhhhhheehheeehh-hHHHHHHHHHHHHHhh
Confidence 344678889999976 5555 55567777643
No 31
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=27.38 E-value=2.1e+02 Score=25.09 Aligned_cols=36 Identities=19% Similarity=0.429 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChhhHhhh
Q psy8153 114 DKLEKLMIRICIFSVLYTVPAVLVIVCYLYEFVYIDYWMLT 154 (193)
Q Consensus 114 ~KLeklM~RIGIFsvLY~vPa~ivi~C~~YE~~nr~~W~~s 154 (193)
.++-+.+.|.|. .++.+=++..++-=+|.. .+|.+.
T Consensus 57 ~~~~~~i~~yg~--~~h~imal~li~~Gi~ti---~~W~~~ 92 (224)
T PF09930_consen 57 MEIYEFILRYGM--VIHLIMALLLIYAGIYTI---KKWKKS 92 (224)
T ss_pred HHHHHHHHHHhH--HHHHHHHHHHHHHHHHHH---HHHccc
Confidence 455566666665 455666666666666665 447554
No 32
>PRK12675 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=27.12 E-value=1.4e+02 Score=23.34 Aligned_cols=27 Identities=26% Similarity=0.651 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy8153 82 SIYLILGLVFLFTGFISLLRIRTIMKH 108 (193)
Q Consensus 82 ~VyLlvG~~FLl~GfvsL~RIR~~~k~ 108 (193)
.+++++|..|.+.|-+-++|..+...+
T Consensus 4 ~~lll~G~~f~l~g~iGllR~PD~ytR 30 (104)
T PRK12675 4 LLFLLFGYSIMFFGALGLLRFPDVYTR 30 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 468899999999999999999888654
No 33
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=26.18 E-value=2.8e+02 Score=25.54 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8153 86 ILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTVPAVLVIVCYLYEF 145 (193)
Q Consensus 86 lvG~~FLl~GfvsL~RIR~~~k~~~~~t~KLeklM~RIGIFsvLY~vPa~ivi~C~~YE~ 145 (193)
.-...|...++++|..-+.-..+. ..+ ..+|+|.+.|++|+++.+...+-|.
T Consensus 157 ss~~~f~~t~~isl~Tf~~w~~~~-~~~-------~~~~Lfvl~~l~p~i~l~~Y~v~q~ 208 (293)
T PF12271_consen 157 SSLILFIGTFYISLDTFKSWTGYL-SPT-------NTIALFVLYYLLPAIFLVIYVVLQL 208 (293)
T ss_pred HHHHHHHHHHHHHHHHHhccccCC-CCC-------CcchhHHHHHHHHHHHHHHHHHHHH
Confidence 334556677777776655443321 111 1369999999999999888777664
No 34
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=25.96 E-value=23 Score=29.24 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred ceEEeecCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8153 61 GVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRT 104 (193)
Q Consensus 61 GICfVGn~n~~aL~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~ 104 (193)
.-|...+. .+..+...+|..+.+++..++++.-+..+.+.++
T Consensus 141 ~~CWl~~~--~~~~~~f~~P~~~~l~in~vi~~~v~~~l~~~~~ 182 (242)
T PF00002_consen 141 DNCWLSND--WGFIWAFVGPVLIILLINIVIFILVLRVLVRKSR 182 (242)
T ss_dssp --------------------------------------------
T ss_pred ccccccCC--CceEEEEEecccceecccchhheeeEEeehhhhh
Confidence 56988772 2345667899999999999888877666655444
No 35
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=25.83 E-value=4.4e+02 Score=22.81 Aligned_cols=55 Identities=11% Similarity=0.235 Sum_probs=27.5
Q ss_pred HHHHHhhhhhcccC----CccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhChhhHh
Q psy8153 96 FISLLRIRTIMKHD----GTKTDKLEKLMIRICIFSVLYTVPAVLVI-VCYLYEFVYIDYWM 152 (193)
Q Consensus 96 fvsL~RIR~~~k~~----~~~t~KLeklM~RIGIFsvLY~vPa~ivi-~C~~YE~~nr~~W~ 152 (193)
++.=.|+.+.+++. ..++++..|.++|.-.+-. .+|.+..+ +...|-......|+
T Consensus 197 ~~~R~ki~~~L~~~~~~~S~~tk~~h~~lv~~Lt~Q~--~lP~~~~~p~~~~~~~~~~~~~~ 256 (292)
T PF10317_consen 197 FFLRRKILKFLNKKSSSMSERTKSMHRQLVKGLTIQA--LLPLFFYIPGVIIYFLSQFTGYE 256 (292)
T ss_pred HHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhccc
Confidence 33334444444442 2456667777777655544 45555555 44444333333333
No 36
>KOG2568|consensus
Probab=25.64 E-value=5.1e+02 Score=25.80 Aligned_cols=33 Identities=33% Similarity=0.470 Sum_probs=19.1
Q ss_pred ecCChhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8153 66 GIWNRQA--LWDFVIIPLSIYLILGLVFLFTGFISLLR 101 (193)
Q Consensus 66 Gn~n~~a--L~gFVL~PL~VyLlvG~~FLl~GfvsL~R 101 (193)
|+++..+ +..|..+|+++.... |+.--|.||.+
T Consensus 330 g~~se~~~~~~lf~~ip~ai~d~~---f~~wIF~SL~~ 364 (518)
T KOG2568|consen 330 GNISELSSLLILFAALPLAILDAA---FIYWIFISLAK 364 (518)
T ss_pred cCcccccchhhHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4554433 245888888877654 44455555553
No 37
>PF14927 Neurensin: Neurensin
Probab=25.40 E-value=74 Score=26.21 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy8153 84 YLILGLVFLFTGFISLL 100 (193)
Q Consensus 84 yLlvG~~FLl~GfvsL~ 100 (193)
.+++|++||+.|+++|.
T Consensus 47 ~~i~g~l~Ll~Gi~~l~ 63 (140)
T PF14927_consen 47 GFISGLLLLLLGIVALT 63 (140)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555543
No 38
>COG5056 ARE1 Acyl-CoA cholesterol acyltransferase [Lipid metabolism]
Probab=24.40 E-value=7e+02 Score=24.75 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=47.7
Q ss_pred EeecCChhhhhHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhhhhhcccC-----C------cc
Q psy8153 64 YVGIWNRQALWDFVIIPLSIY--------------------LILGLVFLFTGFISLLRIRTIMKHD-----G------TK 112 (193)
Q Consensus 64 fVGn~n~~aL~gFVL~PL~Vy--------------------LlvG~~FLl~GfvsL~RIR~~~k~~-----~------~~ 112 (193)
|-+|-+..+...|.+.|.++| -.+|+.||..-..--+-+-..++-. + ..
T Consensus 270 yp~nis~~nfl~Fll~PtL~YQl~yPrta~~rw~yvleK~~~~fg~ifL~vi~~d~ymvPva~r~i~~~~~~~~~~~~~~ 349 (512)
T COG5056 270 YPNNISVRNFLDFLLVPTLCYQLEYPRTARIRWRYVLEKACATFGTIFLMVIVADQYMVPVAMRAIDFENVTDASGTYIA 349 (512)
T ss_pred CCcccchHHHHHHHHHhHHhheecccchheeeHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhccccccchhhH
Confidence 889999999999999999876 3577777776655433333333221 1 12
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8153 113 TDKLEKLMIRICIFSVLYTVPAVLVIVCY 141 (193)
Q Consensus 113 t~KLeklM~RIGIFsvLY~vPa~ivi~C~ 141 (193)
.++.-.+.+-+-.|-++|++.--.+.-|.
T Consensus 350 i~~~~~l~~~mipfivlyll~FY~Ifd~i 378 (512)
T COG5056 350 IENWINLLFDMIPFIVLYLLFFYLIFDCI 378 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333344445557777776655555443
No 39
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=24.25 E-value=3.1e+02 Score=23.55 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccCCccchhHHHHHHHHHHHHHHHHH
Q psy8153 85 LILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSVLYTV 132 (193)
Q Consensus 85 LlvG~~FLl~GfvsL~RIR~~~k~~~~~t~KLeklM~RIGIFsvLY~v 132 (193)
.+++.+-++.|..++-| .+.+-+...|.-+++|+++-++
T Consensus 78 ~~lS~ip~~~G~~s~~r---------N~i~~l~~y~~~~~~~gl~pl~ 116 (186)
T PF07086_consen 78 WCLSLIPSLLGLLSLRR---------NNISLLRLYMIGSSLFGLLPLI 116 (186)
T ss_pred HHHHHHHHHHHHHhccc---------chHHHHHHHHHHHHHHHHHHHH
Confidence 45577777888887654 3445567778888888774433
No 40
>PRK12671 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=24.07 E-value=3.8e+02 Score=21.51 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy8153 74 WDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKH 108 (193)
Q Consensus 74 ~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~ 108 (193)
....-.-..+++++|.+|.+.|-+-+.|..+...+
T Consensus 8 ~~~~~il~~~lll~G~~f~l~gaiGllR~PD~ytR 42 (120)
T PRK12671 8 PLWAAILVAFFLVLGAGLTLIGTIGLVRLKSFYER 42 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 33445556788999999999999999999988754
No 41
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=23.71 E-value=44 Score=23.93 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=36.5
Q ss_pred ccCCcc-hhhHHhhhcchhhhhhhhcCchhhhhhHHHHHHHHhhcCCccCCcccceEEeecCC
Q psy8153 8 FTGDSG-RERLLRTGVRSRHWLELLEDPSEQRSKLEELEELQHLPNPLEGDILTGVCYVGIWN 69 (193)
Q Consensus 8 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~VDGDeLTGICfVGn~n 69 (193)
||=|.+ -+.+-+.|.+.=|+|-|--||.--+..... ..=...--..|||||+.-
T Consensus 23 Ft~D~~~~~~~~~~G~~~V~yLPLAa~~~~~~p~~~~--------~~~~~~~~~dIsFVG~~y 77 (79)
T PF12996_consen 23 FTFDRSFVEEYRNLGAENVFYLPLAANPERFRPIPVD--------PEERKKYECDISFVGSLY 77 (79)
T ss_pred EEECHHHHHHHHHcCCCCEEEccccCCHHHhCcccCC--------cccccccCCCEEEeCcCc
Confidence 444443 467778899999999999998765543322 112244667899999863
No 42
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=23.28 E-value=4e+02 Score=24.76 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=41.5
Q ss_pred hhcCchh---hhhhHHHHHHHHhhcCCccCCcccceEEeecCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy8153 30 LLEDPSE---QRSKLEELEELQHLPNPLEGDILTGVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIM 106 (193)
Q Consensus 30 ~~~~~~~---~~~~~~~~~~~~L~l~~VDGDeLTGICfVGn~n~~aL~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~ 106 (193)
+.||+.| .+.|+.-++...+.++.+-| +|+ |+.....-.-.|-. ....+.++++..+.+.+..+.-.+-..+
T Consensus 30 ~~~~~~~~~~l~r~l~~~~~~~l~vg~iiG---sGi-f~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~al~~aELas~~ 104 (501)
T TIGR00911 30 STVDGGEAVALKKEITLLSGVGIIVGTIIG---SGI-FVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGALVYAELGTTI 104 (501)
T ss_pred cccccccccccCccccHhHhhHhheeceEE---eeE-eecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555554 56778999999999988776 354 33222211111111 1122334455555566666666666666
Q ss_pred ccCC
Q psy8153 107 KHDG 110 (193)
Q Consensus 107 k~~~ 110 (193)
.+.+
T Consensus 105 P~sG 108 (501)
T TIGR00911 105 PKSG 108 (501)
T ss_pred CCCC
Confidence 6554
No 43
>KOG4193|consensus
Probab=22.94 E-value=3e+02 Score=27.58 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=38.2
Q ss_pred cceEEeecCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Q psy8153 60 TGVCYVGIWNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHD 109 (193)
Q Consensus 60 TGICfVGn~n~~aL~gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~ 109 (193)
-+-|-+..++... +..++|+++.+++=+.+++.-++.|++.+...++.
T Consensus 459 ~~~CWl~~~~~~~--~~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~ 506 (610)
T KOG4193|consen 459 PRVCWLDTQNGFI--WSFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPI 506 (610)
T ss_pred CCceEEecCCceE--EEEehHHHHHHHHHHHHHHHHHHHHhhcccccCcc
Confidence 3459998887633 22689999999999999999999888887776653
No 44
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=22.50 E-value=2.5e+02 Score=21.04 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy8153 79 IPLSIYLILGLVFLFTGFISLLRIRTIMKH 108 (193)
Q Consensus 79 ~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~ 108 (193)
-|...++++++.+++.|.+.+...++.++.
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~~~l~~ 99 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGRRRLRR 99 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678889999998888888888877764
No 45
>COG4795 PulJ Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]
Probab=22.50 E-value=1.3e+02 Score=25.86 Aligned_cols=45 Identities=13% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccchhHHHH
Q psy8153 75 DFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKL 119 (193)
Q Consensus 75 gFVL~PL~VyLlvG~~FLl~GfvsL~RIR~~~k~~~~~t~KLekl 119 (193)
||.|+=+.+-+.++.+.++.++..|-.+-+.+++.....+.++++
T Consensus 8 GFTLLEvmvAl~i~All~l~a~~~L~s~~r~~~~~~~~~~r~~eL 52 (194)
T COG4795 8 GFTLLEVLVALAIFALLLLLAFRFLDSAQRSNQASEARLQREAEL 52 (194)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887776654444444444
No 46
>PRK12670 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=22.49 E-value=1.8e+02 Score=22.27 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy8153 82 SIYLILGLVFLFTGFISLLRIRTIMKH 108 (193)
Q Consensus 82 ~VyLlvG~~FLl~GfvsL~RIR~~~k~ 108 (193)
.+++++|..|.+.|-+-++|.++...+
T Consensus 7 ~~ll~~G~~f~l~g~iGllR~pD~y~R 33 (99)
T PRK12670 7 MITLGLGIFLIVISVIGVIRFPDFYTR 33 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 467889999999999999999888654
No 47
>KOG0380|consensus
Probab=22.33 E-value=3.6e+02 Score=26.79 Aligned_cols=75 Identities=16% Similarity=0.348 Sum_probs=44.9
Q ss_pred CChhhhhHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhhhhhcccCCccchhHHHHHHHHHHHH
Q psy8153 68 WNRQALWDFVIIPLSIY--------------------LILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFS 127 (193)
Q Consensus 68 ~n~~aL~gFVL~PL~Vy--------------------LlvG~~FLl~GfvsL~RIR~~~k~~~~~t~KLeklM~RIGIFs 127 (193)
..-.....|.++|-++| =++|+.||...++-=.-+-...+......++..+++.|+
T Consensus 277 ~t~~~~lyFlf~PTLcYq~~yPRt~~iR~~yvl~k~~e~~g~~~l~~~i~~q~~vP~~~n~~~~~~~~~~~~~~~l---- 352 (523)
T KOG0380|consen 277 LTLSNFLYFLFAPTLCYQLSYPRTARIRWRYVLEKFLELLGCIFLMVFIFQQWMVPVARNSKDPPFSDASRLIERL---- 352 (523)
T ss_pred ccHHHHHHHHhcchhcccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccchHHHHHHHH----
Confidence 33557789999999886 357777777776644433222222111112444444444
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy8153 128 VLYTVPAVLVIVCYLYEFV 146 (193)
Q Consensus 128 vLY~vPa~ivi~C~~YE~~ 146 (193)
+--.+|..+..-|.||=..
T Consensus 353 l~l~iP~il~~Ll~FY~if 371 (523)
T KOG0380|consen 353 LKLMIPGILIWLLFFYLIF 371 (523)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 4456788888888888654
No 48
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=21.20 E-value=3.9e+02 Score=20.54 Aligned_cols=12 Identities=8% Similarity=0.525 Sum_probs=10.1
Q ss_pred cceEEeecCChh
Q psy8153 60 TGVCYVGIWNRQ 71 (193)
Q Consensus 60 TGICfVGn~n~~ 71 (193)
.+.|.....+..
T Consensus 133 ~~~C~~~~~~~~ 144 (257)
T PF00001_consen 133 QSFCFIDFSSSS 144 (257)
T ss_dssp CEEEEESCSSSH
T ss_pred cccccccccccc
Confidence 789999888775
No 49
>KOG1311|consensus
Probab=20.74 E-value=5.7e+02 Score=22.32 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=33.6
Q ss_pred cceEEeecCChhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcccCCc--cchhHHHHHHHHHHHHHHHHHHHHH
Q psy8153 60 TGVCYVGIWNRQALWDFVIIPLSIYLILGLVFLF-TGFISLLRIRTIMKHDGT--KTDKLEKLMIRICIFSVLYTVPAVL 136 (193)
Q Consensus 60 TGICfVGn~n~~aL~gFVL~PL~VyLlvG~~FLl-~GfvsL~RIR~~~k~~~~--~t~KLeklM~RIGIFsvLY~vPa~i 136 (193)
+|-| ||..|......|++ ++.++.+..+ .+++.+.+.....+..-. ...+..-...=+++.+++.+.....
T Consensus 147 vnnC-VG~rNyr~F~~f~~-----~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 220 (299)
T KOG1311|consen 147 LNNC-IGERNYRYFVLFLF-----YLALGVLLALAFLFYELLQRADNLKVNLTPVLIPAGTFLSALLGLLSALFLAFTSA 220 (299)
T ss_pred ccce-ECCCchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4444 78888855444443 3444433333 233333322222221111 2222222333344556666666665
Q ss_pred HHHHHHH
Q psy8153 137 VIVCYLY 143 (193)
Q Consensus 137 vi~C~~Y 143 (193)
.+.-++|
T Consensus 221 l~~fh~~ 227 (299)
T KOG1311|consen 221 LLCFHIY 227 (299)
T ss_pred HHHhhee
Confidence 5555554
Done!