Query psy8153
Match_columns 193
No_of_seqs 104 out of 195
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 19:58:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pbl_A D(3) dopamine receptor, 18.3 3.2E+02 0.011 22.6 6.8 24 122-145 198-221 (481)
2 2l9u_A Receptor tyrosine-prote 17.8 1.4E+02 0.0048 18.7 3.4 20 74-93 10-29 (40)
3 3rhw_A Avermectin-sensitive gl 16.1 4.3E+02 0.015 22.1 7.3 15 129-143 320-334 (347)
4 2l61_A EC protein I/II; metall 15.6 51 0.0018 19.2 0.9 9 182-190 11-19 (26)
5 3d3b_A Protein NUSB, N utiliza 15.2 1.2E+02 0.004 22.7 3.1 27 112-138 78-106 (141)
6 1tzv_A NUSB protein, N utiliza 14.7 98 0.0033 23.2 2.5 26 113-138 77-104 (142)
7 1eyv_A NUSB protein, N-utilizi 11.1 1.4E+02 0.0048 22.9 2.5 26 113-138 85-112 (156)
8 3rko_K NADH-quinone oxidoreduc 10.6 1.6E+02 0.0056 20.9 2.5 26 79-105 2-27 (100)
9 3u3c_B Paxillin LD2 peptide; 4 10.5 1.3E+02 0.0044 17.3 1.5 24 39-62 2-25 (26)
10 3vw7_A Proteinase-activated re 9.9 2.3E+02 0.0078 23.5 3.5 25 121-145 188-212 (484)
No 1
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=18.29 E-value=3.2e+02 Score=22.63 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy8153 122 RICIFSVLYTVPAVLVIVCYLYEF 145 (193)
Q Consensus 122 RIGIFsvLY~vPa~ivi~C~~YE~ 145 (193)
-+..+.+.|++|.++++.||..=+
T Consensus 198 ~~~~~~~~~~ip~~ii~~~y~~i~ 221 (481)
T 3pbl_A 198 VIYSSVVSFYLPFGVTVLVYARIY 221 (481)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999998887544
No 2
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=17.75 E-value=1.4e+02 Score=18.73 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy8153 74 WDFVIIPLSIYLILGLVFLF 93 (193)
Q Consensus 74 ~gFVL~PL~VyLlvG~~FLl 93 (193)
...+..-..+++++|..||.
T Consensus 10 lt~i~gl~vif~~lg~tfly 29 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLY 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEE
Confidence 44555666778888888875
No 3
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=16.11 E-value=4.3e+02 Score=22.15 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy8153 129 LYTVPAVLVIVCYLY 143 (193)
Q Consensus 129 LY~vPa~ivi~C~~Y 143 (193)
+...|.+..+.+..|
T Consensus 320 ~~~~p~~~~i~n~~~ 334 (347)
T 3rhw_A 320 RALFPVLFFVFNILY 334 (347)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555554
No 4
>2l61_A EC protein I/II; metallothionein, wheat EC-1, Zn binding, metal-thiolate CLUS metal binding protein; NMR {Triticum aestivum} PDB: 2l62_A
Probab=15.59 E-value=51 Score=19.25 Aligned_cols=9 Identities=44% Similarity=1.224 Sum_probs=7.2
Q ss_pred eccCCCCCC
Q psy8153 182 SIPCPMGLS 190 (193)
Q Consensus 182 ~~pcp~~~~ 190 (193)
++|||-+.+
T Consensus 11 pvPCpGg~a 19 (26)
T 2l61_A 11 AVPCPGGTG 19 (26)
T ss_dssp CSSCSSSTT
T ss_pred cccCCCCcc
Confidence 689998764
No 5
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=15.19 E-value=1.2e+02 Score=22.68 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=21.6
Q ss_pred cchhHHHHHHHHHHHHHHHH--HHHHHHH
Q psy8153 112 KTDKLEKLMIRICIFSVLYT--VPAVLVI 138 (193)
Q Consensus 112 ~t~KLeklM~RIGIFsvLY~--vPa~ivi 138 (193)
.-++..+.+.|+|+|-++|. +|.-+++
T Consensus 78 rl~~~~r~iLrla~yEll~~~~iP~~vaI 106 (141)
T 3d3b_A 78 ELGQVEKAVLRIALYELSKRSDVPYKVAI 106 (141)
T ss_dssp CCCHHHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHhCCCCCchhhH
Confidence 34567899999999999996 7866654
No 6
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=14.70 E-value=98 Score=23.15 Aligned_cols=26 Identities=15% Similarity=0.557 Sum_probs=20.9
Q ss_pred chhHHHHHHHHHHHHHHHH--HHHHHHH
Q psy8153 113 TDKLEKLMIRICIFSVLYT--VPAVLVI 138 (193)
Q Consensus 113 t~KLeklM~RIGIFsvLY~--vPa~ivi 138 (193)
-++..+.+.|+|+|-++|. +|.-+++
T Consensus 77 l~~~~r~iLrla~yEl~~~~~iP~~vaI 104 (142)
T 1tzv_A 77 LSVVDRNVLRLATYELLFEKDIPIEVTI 104 (142)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCchhHH
Confidence 3557899999999999996 7866654
No 7
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=11.14 E-value=1.4e+02 Score=22.87 Aligned_cols=26 Identities=19% Similarity=0.583 Sum_probs=20.8
Q ss_pred chhHHHHHHHHHHHHHHHH--HHHHHHH
Q psy8153 113 TDKLEKLMIRICIFSVLYT--VPAVLVI 138 (193)
Q Consensus 113 t~KLeklM~RIGIFsvLY~--vPa~ivi 138 (193)
-++..+.+.|+|+|-++|. +|.-+++
T Consensus 85 l~~~~r~iLrla~yel~~~~~iP~~v~I 112 (156)
T 1eyv_A 85 LPAVDRAILRVSVWELLHAADVPEPVVV 112 (156)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCchhHH
Confidence 4456889999999999996 7866654
No 8
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=10.57 E-value=1.6e+02 Score=20.88 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8153 79 IPLSIYLILGLVFLFTGFISLLRIRTI 105 (193)
Q Consensus 79 ~PL~VyLlvG~~FLl~GfvsL~RIR~~ 105 (193)
.|+.-|+.++...+..|+..+.. |+.
T Consensus 2 ~~~~~~~~~~~~lf~iGl~g~~~-r~~ 27 (100)
T 3rko_K 2 IPLQHGLILAAILFVLGLTGLVI-RRN 27 (100)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-CCB
T ss_pred cchHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 36677888888888899998887 554
No 9
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=10.55 E-value=1.3e+02 Score=17.26 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=18.5
Q ss_pred hhHHHHHHHHhhcCCccCCcccce
Q psy8153 39 SKLEELEELQHLPNPLEGDILTGV 62 (193)
Q Consensus 39 ~~~~~~~~~~L~l~~VDGDeLTGI 62 (193)
|.|.||.-+.|-++.|.-++-+|.
T Consensus 2 snlseldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 2 SNLSELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred CcHHHHHHHHHHHhhhccCCCCCC
Confidence 456677777888889998888874
No 10
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=9.88 E-value=2.3e+02 Score=23.55 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8153 121 IRICIFSVLYTVPAVLVIVCYLYEF 145 (193)
Q Consensus 121 ~RIGIFsvLY~vPa~ivi~C~~YE~ 145 (193)
.-+..+.+.|++|.++++.||..=+
T Consensus 188 ~~~~~~~~~~~~P~~ii~~~Y~~I~ 212 (484)
T 3vw7_A 188 YFSAFSAVFFFVPLIISTVCYVSII 212 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3456678889999999998887543
Done!