Query psy8153
Match_columns 193
No_of_seqs 104 out of 195
Neff 4.2
Searched_HMMs 13730
Date Fri Aug 16 19:59:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8153.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8153hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ub7a1 c.95.1.2 (A:2-173) Ket 26.3 20 0.0015 25.9 2.9 51 17-70 32-82 (172)
2 d1u0ma1 c.95.1.2 (A:2-201) Put 22.4 13 0.00095 27.7 1.1 61 9-69 29-107 (200)
3 d1teda_ c.95.1.2 (A:) Polyketi 21.8 17 0.0012 28.9 1.8 17 52-68 107-123 (372)
4 d1rh5a_ f.41.1.1 (A:) Preprote 19.4 1.1E+02 0.0083 25.1 6.7 34 101-134 343-387 (422)
5 d1mzja1 c.95.1.2 (A:3-183) Pri 17.4 33 0.0024 24.9 2.4 56 10-69 34-90 (181)
6 d1u69a_ d.32.1.7 (A:) Hypothet 12.5 59 0.0043 23.4 2.6 31 24-56 118-148 (156)
7 d2csba4 a.60.2.4 (A:465-519) T 11.4 50 0.0037 20.3 1.6 28 95-128 2-29 (55)
8 d2axth1 f.23.33.1 (H:2-65) Pho 11.1 1.1E+02 0.0077 19.7 3.2 16 123-138 30-45 (64)
9 d2iuba2 f.17.3.1 (A:286-349) M 10.5 1.2E+02 0.0085 18.3 3.3 23 115-137 1-23 (64)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 7.9 1.8E+02 0.013 15.8 2.9 21 128-148 4-24 (30)
No 1
>d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]}
Probab=26.29 E-value=20 Score=25.90 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=34.1
Q ss_pred HHhhhcchhhhhhhhcCchhhhhhHHHHHHHHhhcCCccCCcccceEEeecCCh
Q psy8153 17 LLRTGVRSRHWLELLEDPSEQRSKLEELEELQHLPNPLEGDILTGVCYVGIWNR 70 (193)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~VDGDeLTGICfVGn~n~ 70 (193)
.-++|++.|||..--|++++--- ++... +|.-..+|.+++--+.+++.+..
T Consensus 32 ~~~~Gi~~R~~~~~~e~~~~ma~--~Aa~~-aL~~agi~~~dIdlli~~s~t~~ 82 (172)
T d1ub7a1 32 VTRTGIKERRVAAEDEYTSDLAF--KAVED-LLRRHPGALEGVDAVIVATNTPD 82 (172)
T ss_dssp HHHTCCCEEEECCTTCCHHHHHH--HHHHH-HHHHSTTTTTTEEEEEEECSSCS
T ss_pred HhccCceeeeeccccccccHHHH--HHHHH-HHhhcCcccccceEEEEeccccc
Confidence 45899999999855454433211 12111 36677899999999999987643
No 2
>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]}
Probab=22.37 E-value=13 Score=27.66 Aligned_cols=61 Identities=25% Similarity=0.307 Sum_probs=33.8
Q ss_pred cCCcchhhH----Hhhhcchhhhhhhhc----Cchhh-hhhH---HHHHHHHhh------cCCccCCcccceEEeecCC
Q psy8153 9 TGDSGRERL----LRTGVRSRHWLELLE----DPSEQ-RSKL---EELEELQHL------PNPLEGDILTGVCYVGIWN 69 (193)
Q Consensus 9 ~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~-~~~~---~~~~~~~L~------l~~VDGDeLTGICfVGn~n 69 (193)
.++...++. -+||++.|||..-.| .|+-+ |.+. ++..+.+-+ -..+|.+++.-+.++....
T Consensus 29 ~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~~~~~~a~~la~~Aa~~aL~~ag~~~~dId~lI~~s~t~ 107 (200)
T d1u0ma1 29 TDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKSRVPAVIQRALDDAELLATDIDVIIYVSCTG 107 (200)
T ss_dssp TTCTTHHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCSEEEEECSSS
T ss_pred CCchhHHHHHHHHHhCCCCeeeEECChhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhheEEEeccCC
Confidence 444444443 367999999964333 23221 2111 222222222 2349999999999887653
No 3
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.84 E-value=17 Score=28.94 Aligned_cols=17 Identities=6% Similarity=-0.089 Sum_probs=13.7
Q ss_pred CCccCCcccceEEeecC
Q psy8153 52 NPLEGDILTGVCYVGIW 68 (193)
Q Consensus 52 ~~VDGDeLTGICfVGn~ 68 (193)
..+|.+++.-+-++...
T Consensus 107 ag~~~~dId~lI~~t~t 123 (372)
T d1teda_ 107 LPYRAAEIGLLVLATST 123 (372)
T ss_dssp CCCCGGGEEEEEEEESS
T ss_pred cCCCHHHCCEEEEeccC
Confidence 34999999999988654
No 4
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=19.40 E-value=1.1e+02 Score=25.14 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=23.0
Q ss_pred hhhhhcccCC---------ccc-hh-HHHHHHHHHHHHHHHHHHH
Q psy8153 101 RIRTIMKHDG---------TKT-DK-LEKLMIRICIFSVLYTVPA 134 (193)
Q Consensus 101 RIR~~~k~~~---------~~t-~K-LeklM~RIGIFsvLY~vPa 134 (193)
++-+++|+++ ++| +| |+|.+.|+..++.+|+...
T Consensus 343 ~iAe~lkk~g~~IpGiRpG~~T~~~~L~~vi~rit~~Ga~~l~~i 387 (422)
T d1rh5a_ 343 SMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFL 387 (422)
T ss_dssp HHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666643 355 67 8999999999998888543
No 5
>d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]}
Probab=17.41 E-value=33 Score=24.87 Aligned_cols=56 Identities=18% Similarity=0.027 Sum_probs=33.6
Q ss_pred CCcchhhHHhhhcchhhhhhhhcCchhhhhhHHHHH-HHHhhcCCccCCcccceEEeecCC
Q psy8153 10 GDSGRERLLRTGVRSRHWLELLEDPSEQRSKLEELE-ELQHLPNPLEGDILTGVCYVGIWN 69 (193)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~l~~VDGDeLTGICfVGn~n 69 (193)
|.+...-.-+||+++|||..-=|++++ +..-. --+|.-..+|.+++-.+-++....
T Consensus 34 ~~~~~~i~~~tGi~~R~~~~~~e~~~~----ma~~Aa~~aL~~a~~~~~dId~li~~s~~~ 90 (181)
T d1mzja1 34 DSTEEWIETRTGIRSRRIAEPDETIQV----MGVAASRRALEHAGVDPAEIDLVVVSTMTN 90 (181)
T ss_dssp SCCHHHHHHHHCCSEEECCCTTCCHHH----HHHHHHHHHHHHHTCCGGGCCEEEEECSCC
T ss_pred CCCHHHHHhccCcceehhhccCCcHHH----HhHHHHHhhhhhccCChhHCeEEEEeccCC
Confidence 444332234799999999754444433 22211 124555678888888888775553
No 6
>d1u69a_ d.32.1.7 (A:) Hypothetical protein PA2721 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.49 E-value=59 Score=23.43 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=23.0
Q ss_pred hhhhhhhhcCchhhhhhHHHHHHHHhhcCCccC
Q psy8153 24 SRHWLELLEDPSEQRSKLEELEELQHLPNPLEG 56 (193)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~VDG 56 (193)
.|+--|+++||++++. +......|-|.++|=
T Consensus 118 ~~~~~~~~~~~~~~~~--~~~~~a~~~m~k~d~ 148 (156)
T d1u69a_ 118 PRVLSEAIASPDRAAA--RRAFEAMMTMGRIDI 148 (156)
T ss_dssp EHHHHHHHTCSSHHHH--HHHHHHHTTCSSCCH
T ss_pred hHHHHHHhcCCCHHHH--HHHHHHHHcCcCeeH
Confidence 4566789999998765 455666778899884
No 7
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=11.42 E-value=50 Score=20.32 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=20.3
Q ss_pred HHHHHHhhhhhcccCCccchhHHHHHHHHHHHHH
Q psy8153 95 GFISLLRIRTIMKHDGTKTDKLEKLMIRICIFSV 128 (193)
Q Consensus 95 GfvsL~RIR~~~k~~~~~t~KLeklM~RIGIFsv 128 (193)
|+.+|+.||.. ..++-|+++.|.|=+|-
T Consensus 2 gyaslisirgi------dreraerllkkyggysk 29 (55)
T d2csba4 2 GYASLISIRGI------DRERAERLLKKYGGYSK 29 (55)
T ss_dssp THHHHHTSTTC------CHHHHHHHHHHHTSHHH
T ss_pred Cccceeeeecc------cHHHHHHHHHHhcChhH
Confidence 56788888754 44667888888887663
No 8
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.14 E-value=1.1e+02 Score=19.72 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy8153 123 ICIFSVLYTVPAVLVI 138 (193)
Q Consensus 123 IGIFsvLY~vPa~ivi 138 (193)
||+|-.++.++.++.+
T Consensus 30 Mgv~m~Lf~vfl~iiL 45 (64)
T d2axth1 30 MAVFMGLFLVFLLIIL 45 (64)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6888888888776654
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=10.54 E-value=1.2e+02 Score=18.31 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy8153 115 KLEKLMIRICIFSVLYTVPAVLV 137 (193)
Q Consensus 115 KLeklM~RIGIFsvLY~vPa~iv 137 (193)
|..+.|.++.+.+++++-|.+++
T Consensus 1 r~N~~mk~lT~it~iflP~t~i~ 23 (64)
T d2iuba2 1 KTNEVMKVLTIIATIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888887776653
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.86 E-value=1.8e+02 Score=15.75 Aligned_cols=21 Identities=10% Similarity=0.399 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCh
Q psy8153 128 VLYTVPAVLVIVCYLYEFVYI 148 (193)
Q Consensus 128 vLY~vPa~ivi~C~~YE~~nr 148 (193)
+-|+.-..|.++..|+..+.|
T Consensus 4 i~yv~ifac~i~lfffaiffr 24 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred eehHHHHHHHHHHHHHHHHhc
Confidence 445555566666666655544
Done!