RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8153
(193 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.003
Identities = 43/243 (17%), Positives = 73/243 (30%), Gaps = 72/243 (29%)
Query: 9 TGDSGRERLLRTGVRSRHWLE----------LLEDPSEQRSKL--------------EEL 44
T + L++ + +R + L E ++L EEL
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 45 EELQHLPNPLEGDIL-----------------TGVCYVGI----W----NRQALWDFVI- 78
+L + L GD++ V G+ W + D+++
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 79 IPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLM--IRICIFSVLYTVPAVL 136
IP+S LI G I L K G +L + + V AV
Sbjct: 234 IPISCPLI--------GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL---VTAVA 282
Query: 137 VIVCYLYE-FVYIDYWMLTW--HVDM-CSGTSSVSSLS-KPMTSSYNNIYSIPCPM---- 187
+ +E F +T + + C +SL + S N +P PM
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 188 GLS 190
L+
Sbjct: 343 NLT 345
Score = 28.9 bits (64), Expect = 1.5
Identities = 18/145 (12%), Positives = 42/145 (28%), Gaps = 38/145 (26%)
Query: 8 FTGDSGRERLLRTGVRSRHWLELLEDPSEQRSKLEEL-EELQHLPNPL--EGD------- 57
F G+ G+ +R + + E + + K E++ +E+ +
Sbjct: 1676 FGGEKGKR------IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 58 ------ILTGVCYVGIWNRQALWDFVIIPLSIYLI---LG----L-----VFLFTGFISL 99
+ + + + L +IP LG L V + +
Sbjct: 1730 QFTQPALTL-MEKA-AF--EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 100 LRIRTIMKHDGTKTDKLEKLMIRIC 124
+ R + D+L + +
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMI 1810
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 0.73
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 6/22 (27%)
Query: 25 RHWLELLEDPSEQRSKLEELEE 46
R W E EQR +L+EL+
Sbjct: 88 RKWRE------EQRKRLQELDA 103
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 28.6 bits (64), Expect = 1.2
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 95 GFISLLRIRTIMKHDGTKTDKLEKLMIR 122
G +S R G ++ + R
Sbjct: 203 GTLSRKEFREHFVRLGFDKKSVQDALFR 230
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 27.6 bits (61), Expect = 1.7
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 25 RHWLELLEDPSEQRSKLEELEELQHL 50
+ E +E+ KLE+ LQ
Sbjct: 36 TRYQSFKERVAERGQKLEDSYHLQVF 61
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme,
protease, Z disulfide bond, hydrolase, metal-binding,
metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A
1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Length = 235
Score = 27.5 bits (61), Expect = 2.5
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 6/45 (13%)
Query: 42 EELEELQHLPNPLEGDIL------TGVCYVGIWNRQALWDFVIIP 80
E L + EGDI I + LW +IP
Sbjct: 6 EAARALYYNDGMFEGDIKLRAGRQPARVGAAILGDEYLWSGGVIP 50
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 27.8 bits (61), Expect = 2.7
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 6 NAFTGDSGRERLLRTGVRSRHWLELLEDPSEQRSKLEE 43
+ G L + LE + QR K +
Sbjct: 6 SELCSPQGHGVLQQMQEAELRLLEGMRKWMAQRVKSDR 43
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 27.5 bits (60), Expect = 2.9
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 24 SRHWLELLEDPSEQRSKLEELEELQHLPNPLEGDILTGVCYVGIW 68
W L ++R LE +E+L + L + W
Sbjct: 217 CDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNW 261
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 26.6 bits (59), Expect = 5.1
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 68 WNRQALWDFVIIPLSIYLILGLVFLFTGFISLLRIRTIMKHDGTKTDKLEKLMIRICIFS 127
W+ L+DF ++ +S+ + L R + +R + +
Sbjct: 94 WS---LFDFFVVAISLVPTSSGFEILRVLRVLRLFRLVTAVPQ----------MRKIVSA 140
Query: 128 VLYTVPAVLVIVCYLYEFVYI 148
++ +P +L ++ + F YI
Sbjct: 141 LISVIPGMLSVIALMTLFFYI 161
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 26.4 bits (58), Expect = 5.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 25 RHWLELLEDPSEQRSKLEELEELQHL 50
HW EL + + + +LEE E Q
Sbjct: 86 DHWKELKQLAAARGQRLEESLEYQQF 111
>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: f.24.1.1
Length = 663
Score = 26.6 bits (59), Expect = 6.5
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 84 YLILGLVFLFTGFISLLRIRT 104
Y+I+ +V L GF + +R+
Sbjct: 61 YIIVAIVMLLRGFADAIMMRS 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.448
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,093,885
Number of extensions: 180739
Number of successful extensions: 555
Number of sequences better than 10.0: 1
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 33
Length of query: 193
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 105
Effective length of database: 4,244,745
Effective search space: 445698225
Effective search space used: 445698225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.0 bits)