BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8155
(617 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 126/290 (43%), Gaps = 22/290 (7%)
Query: 213 IFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 270
+ R+ A SP ++ +T+ T Q+ A +NR A+ A G+ KGD VAL++ N E
Sbjct: 21 MLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE 80
Query: 271 FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYG---AELTDAVQEISTSLG 327
F CL+ G +KLG + IN L + ++ +G IYG A + DA++ + G
Sbjct: 81 FCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPG 140
Query: 328 SNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL 387
+ L S P + G D L +YTSGTTG
Sbjct: 141 TVTDWIGADSLAER-------------LRSAAADEP---AVECGGDDNLFIMYTSGTTGH 184
Query: 388 PKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447
PK V ++ + + A I R +DR PLP++H A I A+ G ++
Sbjct: 185 PKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP 243
Query: 448 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG 497
+F A+ +S + + + +G + + ++ PE E A + R G
Sbjct: 244 QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG 293
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 126/290 (43%), Gaps = 22/290 (7%)
Query: 213 IFREHAVRSPNKVIFMFENTE--WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 270
+ R+ A SP ++ +T+ T Q+ A +NR A+ A G+ KGD VAL++ N E
Sbjct: 7 MLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE 66
Query: 271 FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYG---AELTDAVQEISTSLG 327
F CL+ G +KLG + IN L + ++ +G IYG A + DA++ + G
Sbjct: 67 FCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPG 126
Query: 328 SNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL 387
+ L S P + G D L +YTSGTTG
Sbjct: 127 TVTDWIGADSLAER-------------LRSAAADEP---AVECGGDDNLFIMYTSGTTGH 170
Query: 388 PKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447
PK V ++ + + A I R +DR PLP++H A I A+ G ++
Sbjct: 171 PKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP 229
Query: 448 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG 497
+F A+ +S + + + +G + + ++ PE E A + R G
Sbjct: 230 QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG 279
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 109/273 (39%), Gaps = 14/273 (5%)
Query: 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
D T+AD++R +A P++ FM + T + A + R+A+ L G+ GD VA++
Sbjct: 4 HDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILS 63
Query: 266 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 325
+N E + L ++ +G I +N+ L + + + S + G + D V + S
Sbjct: 64 QNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPS 123
Query: 326 LGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 385
LG K + L S+ P S P G D + I+T+
Sbjct: 124 LGGVKKAYAIGDGSGPFAPFKD-------LASDTPFSAPEF----GAADGFVIIHTAAVG 172
Query: 386 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG-GAMCIGQALIFGCCVV 444
G P+ A+IS ++ D LPL+H G G M Q G V
Sbjct: 173 GRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQA--GGASV 230
Query: 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLL 477
I KF + D+ +K TV M +L
Sbjct: 231 IAAKFDPAQAARDIEAHKVTVMAEFAPMLGNIL 263
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 142/340 (41%), Gaps = 40/340 (11%)
Query: 212 DIFREHAVRSPNKVIFMF-----ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
D+ +A SP K+ ++ +T + ++ YS++ ANFF+ G+ KGD V L L+
Sbjct: 60 DVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLK 119
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE--LTDAVQEIST 324
+R +F LGL KLG I H L+ +++ I AG+ + AE + + V E
Sbjct: 120 SRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA 179
Query: 325 SLGS-NVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSG 383
G +K + E PT S +D + ++SG
Sbjct: 180 ECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKN----EDICLVYFSSG 235
Query: 384 TTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT---AGGAMCIGQAL--- 437
T G PK ++ + Y LG + + +D L++T +G C+ L
Sbjct: 236 TAGFPK--MVEHDNTYPLGHILTAKYWQNVEDD-----GLHYTVADSGWGKCVWGKLYGQ 288
Query: 438 -IFGCCVVI--RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH------ 488
I GC V + +F A N KY T + R+L+ ED +H
Sbjct: 289 WIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIK-----EDLSHYNFSTL 343
Query: 489 NVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
++ G L P++++ F++ F ++ E +G TE + I
Sbjct: 344 KYAVVAGEPLNPEVFNRFLE-FTGIKLMEGFGQTETVVTI 382
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 111 LCSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWG 170
LC E G + + P ++ Y + + ++ + D + + +GD+ MD+ G
Sbjct: 413 LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGY------YHTGDMAWMDEDG 466
Query: 171 YLYFKDRTGD 180
YL+F R D
Sbjct: 467 YLWFVGRADD 476
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/315 (21%), Positives = 128/315 (40%), Gaps = 30/315 (9%)
Query: 219 VRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGL 278
+ N ++ + + E TA++V + N++ G+++GD + L L + PEFV +LG
Sbjct: 42 INGANGDVYTYADVELTARRVASGLNKI-------GIQQGDVIMLFLPSSPEFVLAFLGA 94
Query: 279 SKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXX 338
S G I N L + I A + V++ + S+VK+
Sbjct: 95 SHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARE--SDVKVMCVDSA 152
Query: 339 XXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY 398
+V SP D + Y+SGTTGLPK ++++
Sbjct: 153 PDGCLHFSELTQADENEAPQVDISP---------DDVVALPYSSGTTGLPKGVMLTHKG- 202
Query: 399 YFLGGAIAYQIG-------FRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSA 451
L ++A Q+ F ++D LP++H + L G ++I KF
Sbjct: 203 --LITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEI 260
Query: 452 SNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSEFVDR 509
+ + KYK ++ + + + +P+ + ++R++ G L ++ +
Sbjct: 261 GSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAK 320
Query: 510 FRIAQIGEFYGATEG 524
F A++G+ YG TE
Sbjct: 321 FPQARLGQGYGMTEA 335
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 32/266 (12%)
Query: 209 TIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T+ ++ R A R+P+ T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 324
N + V L L +LG + AL+N L+ L I ++A + G ++ DA+ +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS-- 120
Query: 325 SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 384
GS ++ P P P R Q I+ YTSGT
Sbjct: 121 --GSGARII----------FLGDLVRDGEPYSYGPPIEDPQ---REPAQPAFIF-YTSGT 164
Query: 385 TGLPKAAVI----SNHRYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAMCIGQALI 438
TGLPKAA+I + R F+ + Q+G R + +PLYH G + AL
Sbjct: 165 TGLPKAAIIPQRAAESRVLFM----STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCT 464
V+ ++F + V + + T
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVT 246
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 32/266 (12%)
Query: 209 TIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T+ ++ R A R+P+ T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 324
N + V L L +LG + AL+N L+ L I ++A + G ++ DA+ +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS-- 120
Query: 325 SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 384
GS ++ P P P R Q I+ YTSGT
Sbjct: 121 --GSGARII----------FLGDLVRDGEPYSYGPPIEDPQ---REPAQPAFIF-YTSGT 164
Query: 385 TGLPKAAVI----SNHRYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAMCIGQALI 438
TGLPKAA+I + R F+ + Q+G R + +PLYH G + AL
Sbjct: 165 TGLPKAAIIPQRAAESRVLFM----STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCT 464
V+ ++F + V + + T
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVT 246
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 32/266 (12%)
Query: 209 TIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T+ ++ R A R+P+ T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 324
N + V L L +LG + AL+N L+ L I ++A + G ++ DA+ +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS-- 120
Query: 325 SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 384
GS ++ P P P R Q I+ YTSGT
Sbjct: 121 --GSGARII----------FLGDLVRDGEPYSYGPPIEDPQ---REPAQPAFIF-YTSGT 164
Query: 385 TGLPKAAVI----SNHRYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAMCIGQALI 438
TGLPKAA+I + R F+ + Q+G R + +PLYH G + AL
Sbjct: 165 TGLPKAAIIPQRAAESRVLFM----STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCT 464
V+ ++F + V + + T
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVT 246
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 32/266 (12%)
Query: 209 TIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T+ ++ R A R+P+ T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 324
N + V L L +LG + AL+N L+ L I ++A + G ++ DA+ +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS-- 120
Query: 325 SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 384
GS ++ P P P R Q I+ YTSGT
Sbjct: 121 --GSGARII----------FLGDLVRDGEPYSYGPPIEDPQ---REPAQPAFIF-YTSGT 164
Query: 385 TGLPKAAVI----SNHRYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAMCIGQALI 438
TGLPKAA+I + R F+ + Q+G R + +PLYH G + AL
Sbjct: 165 TGLPKAAIIPQRAAESRVLFM----STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCT 464
V+ ++F + V + + T
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVT 246
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 32/266 (12%)
Query: 209 TIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T+ ++ R A R+P+ T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 324
N + V L L +LG + AL+N L+ L I ++A + G ++ DA+ +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS-- 120
Query: 325 SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 384
GS ++ P P P R Q I+ YTSGT
Sbjct: 121 --GSGARII----------FLGDLVRDGEPYSYGPPIEDPQ---REPAQPAFIF-YTSGT 164
Query: 385 TGLPKAAVI----SNHRYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAMCIGQALI 438
TGLPKAA+I + R F+ + Q+G R + +PLYH G + AL
Sbjct: 165 TGLPKAAIIPQRAAESRVLFM----STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCT 464
V+ ++F + V + + T
Sbjct: 221 LDGTYVVIEEFRPVDALQLVQQEQVT 246
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/413 (21%), Positives = 159/413 (38%), Gaps = 89/413 (21%)
Query: 217 HAVRSPNKVIFMFENTE------WTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRP 269
HA+++PNK +FE E T +++ +VA + G++KGD+VA+ + P
Sbjct: 91 HALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP 150
Query: 270 EFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN 329
E + L +S++G I +++ NSL IN I E + I T +
Sbjct: 151 EAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVD 210
Query: 330 VKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYR-------------------- 369
L +L T+ PS+++
Sbjct: 211 DAL--------------RETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPC 256
Query: 370 --VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT--KDRFYTPLPLYH 425
V +D L +YTSG+TG PK V + Y LG + + F T +D F+T +
Sbjct: 257 TPVDSEDPLFLLYTSGSTGAPK-GVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGW 315
Query: 426 TAGGAMCIGQALIFGCCVVIRKKFSA----SNYFSDVCKYKCTVGQYIGEMCRYLLSTPE 481
G + L++GC ++ + A S Y+ + ++K T Y+ LL
Sbjct: 316 ITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVT-QFYVAPTALRLLKRAG 374
Query: 482 KPEDKAHNVRLM-----FGNGLRPQIW---SEFVDRFRIAQIGEFYGATEGM-------- 525
+ H+++ + G + ++W SE + + I + ++ G
Sbjct: 375 DSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG 434
Query: 526 ------------------AAILDINKSLDV-SAVSEG---IKKALPSYARPLF 556
A +LD N ++ ++ +EG +K A PS+AR ++
Sbjct: 435 GVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIW 487
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 103/267 (38%), Gaps = 34/267 (12%)
Query: 209 TIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T+ + R A R+P+ T ++ A VA A GL+ VA++
Sbjct: 3 TVNEXLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 324
N + V L L +LG + AL+N L+ L I +A + G ++ DA+ +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQVADAIFQS-- 120
Query: 325 SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 384
GS ++ P P P R Q I+ YTSGT
Sbjct: 121 --GSGARII----------FLGDLVRDGEPYSYGPPIEDPQ---REPAQPAFIF-YTSGT 164
Query: 385 TGLPKAAVI----SNHRYYFLGGAIAYQIGFRTKDRFYTPL---PLYHTAGGAMCIGQAL 437
TGLPKAA+I + R F + Q+G R R L PLYH G + AL
Sbjct: 165 TGLPKAAIIPQRAAESRVLFX----STQVGLR-HGRHNVVLGLXPLYHVVGFFAVLVAAL 219
Query: 438 IFGCCVVIRKKFSASNYFSDVCKYKCT 464
V+ ++F + V + + T
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQEQVT 246
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 112/302 (37%), Gaps = 19/302 (6%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
+T V S ++A F G+ + D V L+L N PEFV +L S G N
Sbjct: 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 294 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXX 353
+ + I A D ++ + G +
Sbjct: 149 PAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQ 208
Query: 354 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG--- 410
S S S + D + Y+SGTTGLPK +++ + L ++A Q+
Sbjct: 209 ---STTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLT---HKGLVTSVAQQVDGEN 262
Query: 411 ----FRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVG 466
F + D LP++H + L G ++I KF + + + K TV
Sbjct: 263 PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVA 322
Query: 467 QYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVD----RFRIAQIGEFYGAT 522
+ + + + E + ++R++ +G P + E D +F A++G+ YG T
Sbjct: 323 PMVPPIVLAIAKSSETEKYDLSSIRVV-KSGAAP-LGKELEDAVNAKFPNAKLGQGYGMT 380
Query: 523 EG 524
E
Sbjct: 381 EA 382
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 17/191 (8%)
Query: 234 WTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 292
W +++ S + AN A GL++GD VA++L PE+ + LG + G+I +
Sbjct: 74 WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS-NVKLFXXXXXXXXXXXXXXXXXX 351
+ +L+ + ++ A + G E+ V +++ S +KL
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKK---- 189
Query: 352 XXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG---GAIAYQ 408
LL+E T+ + G Q+ +TSGT+GLPK A H Y LG A
Sbjct: 190 ---LLNEASTTHHCV--ETGSQEASAIYFTSGTSGLPKMA---EHSYSSLGLKAKMDAGW 241
Query: 409 IGFRTKDRFYT 419
G + D +T
Sbjct: 242 TGLQASDIMWT 252
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 17/191 (8%)
Query: 234 WTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 292
W +++ S + AN A GL++GD VA++L PE+ + LG + G+I +
Sbjct: 74 WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133
Query: 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS-NVKLFXXXXXXXXXXXXXXXXXX 351
+ +L+ + ++ A + G E+ V +++ S +KL
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKK---- 189
Query: 352 XXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG---GAIAYQ 408
LL+E T+ + G Q+ +TSGT+GLPK A H Y LG A
Sbjct: 190 ---LLNEASTTHHCV--ETGSQEASAIYFTSGTSGLPKMA---EHSYSSLGLKAKMDAGW 241
Query: 409 IGFRTKDRFYT 419
G + D +T
Sbjct: 242 TGLQASDIMWT 252
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 27/200 (13%)
Query: 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
+D TI +F E + PN V + EN + T ++ +N++A F+ +G+ K V +M+
Sbjct: 37 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMM 96
Query: 266 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 325
E + L + K G I+ + + + ++ + + L + I
Sbjct: 97 EKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI--Q 154
Query: 326 LGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 385
V++F VP+ L+Y IYTSGTT
Sbjct: 155 FNGQVEIFEEDTIKIREGTNL-----------HVPSKSTDLAY---------VIYTSGTT 194
Query: 386 GLPKAAV-----ISNHRYYF 400
G PK + ISN + +F
Sbjct: 195 GNPKGTMLEHKGISNLKVFF 214
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 115/313 (36%), Gaps = 38/313 (12%)
Query: 138 NEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFL 197
E D + TD +G + + V W + D ++ LR
Sbjct: 9 EEYDGGHVVLTDA--LGRHSLWPAGIAVPAGWSVRHGTDSREGCLAHIEHHWTD--LRPT 64
Query: 198 WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKK 257
A A + ++F A R+P+ V + E E T + +NR+A+ + G+
Sbjct: 65 GPAVERAPAGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAP 124
Query: 258 GDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTD 317
G V + LE + V L + K G +++ L +S GA L
Sbjct: 125 GTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERL-------ALSLEDTGAPLLV 177
Query: 318 AVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLI 377
+ +S L L+ S+ P +L+ VG +D
Sbjct: 178 TSRPLSGRLTGTTTLYVEDEAA-----------------SDAPAG--NLATGVGPEDVAC 218
Query: 378 YIYTSGTTGLPKAAVISNHRYY---FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 434
++TSG+TG PK V+S HR +LG A GF + F P+ A G G
Sbjct: 219 VMFTSGSTGRPK-GVMSPHRALTGTYLGQDYA---GFGPDEVFLQCSPVSWDAFGLELFG 274
Query: 435 QALIFGCCVVIRK 447
AL+FG V++
Sbjct: 275 -ALLFGARCVLQS 286
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 98/269 (36%), Gaps = 27/269 (10%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEW----TAQQVEAYSNRVANFFLAQGLKKGDSVALM 264
++ D+ R A+ SPNK F N E T +Q++ ++ +A A+G K GD V L+
Sbjct: 12 SLVDVVRLRALHSPNKKSCTFLNKELEETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLL 71
Query: 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIST 324
+ +LG G I I ++ L I S + + D +++ +
Sbjct: 72 FAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLXIADHIKKFTA 131
Query: 325 -SLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSG 383
L +N K S PTS + D YTSG
Sbjct: 132 DELNTNPKFLKIPAIALESIELNRSS-------SWQPTS-------IKSNDIAFLQYTSG 177
Query: 384 TTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDR--FYTPLPLYHTAGGAMCIGQALIFGC 441
+T PK +S+H L F D ++ LP +H G CI + G
Sbjct: 178 STXHPKGVXVSHHN--LLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPIYGGI 235
Query: 442 CVVIRKKFS----ASNYFSDVCKYKCTVG 466
+ FS ++ + KYK T+
Sbjct: 236 QAIXXSPFSFLQNPLSWLKHITKYKATIS 264
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 115/313 (36%), Gaps = 38/313 (12%)
Query: 138 NEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFL 197
E D + TD +G + + V W + D ++ LR
Sbjct: 9 EEYDGGHVVLTDA--LGRHSLWPAGIAVPAGWSVRHGTDSREGCLAHIEHHWTD--LRPT 64
Query: 198 WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKK 257
A A + ++F A R+P+ V + E E T + +NR+A+ + G+
Sbjct: 65 GPAVERAPAGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAP 124
Query: 258 GDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTD 317
G V + LE + V L + K G +++ L +S GA L
Sbjct: 125 GTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERL-------ALSLEDTGAPLLV 177
Query: 318 AVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLI 377
+ +S L L+ S+ P +L+ VG +D
Sbjct: 178 TSRPLSGRLTGTTTLYVEDEAA-----------------SDAPAG--NLATGVGPEDVAC 218
Query: 378 YIYTSGTTGLPKAAVISNHRYY---FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 434
++TSG+TG PK V+S HR +LG A GF + F P+ A G G
Sbjct: 219 VMFTSGSTGRPK-GVMSPHRALTGTYLGQDYA---GFGPDEVFLQCSPVSWDAFGLELFG 274
Query: 435 QALIFGCCVVIRK 447
AL+FG V++
Sbjct: 275 -ALLFGARCVLQS 286
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 102/290 (35%), Gaps = 22/290 (7%)
Query: 238 QVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSL 297
++ A + RVAN +A+GL+ GD VA E E + L+L + G + +N + L
Sbjct: 33 ELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHEL 92
Query: 298 LHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLS 357
+ I A + D + I+ +G+ V+
Sbjct: 93 DYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEA------ 146
Query: 358 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRF 417
+ G D +YTSGTTG K A +S+ + F D
Sbjct: 147 -------FATIDRGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVL 199
Query: 418 YTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLL 477
LP+YHT G + L + KF + TV + LL
Sbjct: 200 IHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATVLXGVPTFYTRLL 257
Query: 478 STPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIG----EFYGATE 523
+P ++ + RL F +G P + R A+ G E YG TE
Sbjct: 258 QSPRLTKETTGHXRL-FISGSAPLLADTH--REWSAKTGHAVLERYGXTE 304
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 51/102 (50%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 268
T D+ R+ A + +++ NT W+ ++++ ++R+A F G+++ D V + L N
Sbjct: 26 TFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNI 85
Query: 269 PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 310
EF + L +LG + + R + + + A +A+I
Sbjct: 86 KEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 51/102 (50%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 268
T D+ R+ A + +++ NT W+ ++++ ++R+A F G+++ D V + L N
Sbjct: 26 TFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNI 85
Query: 269 PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 310
EF + L +LG + + R + + + A +A+I
Sbjct: 86 KEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 89/228 (39%), Gaps = 43/228 (18%)
Query: 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
++ + +FRE A +P + E+ + +++A+S+ VA LA+G++ GD VAL +
Sbjct: 33 RNSDLVSLFREVAATAPERTALSAEDDRISYGRLDAWSDAVARTLLAEGVRPGDRVALRM 92
Query: 266 ENRPEFVCLWLGLSKLG---VITALINHNLRQNSLLHCINIAGVSAFI----YGAELTDA 318
E + L + K G V L N R + +L +G SA I G +T
Sbjct: 93 SPGAEAIVAILAILKCGAAYVPVDLRNPVSRSDFILAD---SGASALIGEPHEGCAVTRV 149
Query: 319 VQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIY 378
V+ + + + + P + + G +D
Sbjct: 150 VRTAAVAECKDAE-----------------------------PGPVTGAPGPGAEDMAYV 180
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT 426
IYTSGTTG PK + + L F DR+ L+H+
Sbjct: 181 IYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWL----LFHS 224
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 84/210 (40%), Gaps = 14/210 (6%)
Query: 374 DKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 433
D + +YTSGTTG PK AVI A+A + +D LPL+H G + I
Sbjct: 156 DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGI 215
Query: 434 GQALIFGCCVVIRKKFS---ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNV 490
L G V +FS A+ +D V + L + PE + A
Sbjct: 216 LGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLPADPELAKALAGAR 275
Query: 491 RLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPS 550
L+ G+ P E + ++ E YG TE + ++ S ++G +A +
Sbjct: 276 LLVSGSAALPVHDHERIAAATGRRVIERYGMTETL---------MNTSVRADGEPRAG-T 325
Query: 551 YARPLFIRCLREVEMTGTYKLKKLDLQKEG 580
PL LR VE GT + LD + G
Sbjct: 326 VGVPLPGVELRLVEEDGT-PIAALDGESVG 354
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 359 VPTSPPS--LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDR 416
VP PS L+ + D ++TSGTTG KA + +Y +GF
Sbjct: 147 VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTN 206
Query: 417 FYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYL 476
+ + LP+YH +G ++ + +A+I G V I KF+A + + + T + + +L
Sbjct: 207 WLSVLPIYHISGLSVLL-RAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWL 265
Query: 477 L 477
+
Sbjct: 266 M 266
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 124/318 (38%), Gaps = 26/318 (8%)
Query: 238 QVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI--TALINHNLRQN 295
+++ S +A +GL KGD+ + L N EF ++ L K GV+ AL +H RQ
Sbjct: 60 ELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSH--RQY 117
Query: 296 SLLHCINIAGVSAFIYGAE---LTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXX 352
L +AFI + L + Q S +
Sbjct: 118 EL---------NAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATD 168
Query: 353 XPLLSEVPTSPPS-LSYRVGVQDKLIYIYTSG-TTGLPKAAVISNHRYYFLGGAIAYQIG 410
LL + T + + + D++ + SG +TG PK +++ Y + A A G
Sbjct: 169 FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICG 228
Query: 411 FRTKDRFYTPLPLYH----TAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVG 466
+ R LP H ++ GA+ + A G CVV+ N FS + +++ +
Sbjct: 229 LNSNTRLLCALPAPHNFMLSSPGALGVLHA---GGCVVMAPNPEPLNCFSIIQRHQVNMA 285
Query: 467 QYIGEMCRYLLSTPEKPEDKAHNVRLM-FGNGLRPQIWSEFVDRFRIAQIGEFYGATEGM 525
+ L + +D+ +++L+ G P+ + V ++ + +G EG+
Sbjct: 286 SLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGL 345
Query: 526 AAILDINKSLDVSAVSEG 543
++ S + ++G
Sbjct: 346 VNYTRLDDSDEQIFTTQG 363
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 140/353 (39%), Gaps = 30/353 (8%)
Query: 211 ADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 270
A +FR + R+ K ++ + T ++E + R A+ G+ + + L++ +
Sbjct: 27 AYLFRLNETRA-GKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVA 85
Query: 271 FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY-GAELTDAVQEISTSLGSN 329
+LG GV+ + N L ++ + + A I GA + + Q + ++
Sbjct: 86 LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDG 145
Query: 330 VKLFXXXXXXXXXXXXXXXXXXXXPLLSEV--PTSPPSLSYRVGVQDKLIYIYTSGTTGL 387
+L PL E+ +P + + G D ++Y+SG+TG
Sbjct: 146 CQLIVSQPRESEPRLA--------PLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGK 197
Query: 388 PKAAVISNHRYYFLGGAIAYQI-GFRTKDRFYTPLPLYHTAGGAMCIGQALIF-----GC 441
PK V ++ Y+ A I G D ++ L+ G +G L F
Sbjct: 198 PKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYG----LGNGLTFPLSVGAT 253
Query: 442 CVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKP--EDKAHNVRLMFGNGLR 499
+++ ++ +A F+ + +++ TV + + +L +P P D A + G L
Sbjct: 254 AILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALP 313
Query: 500 PQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIK-KALPSY 551
+I F F +I + G+TE +L I S AV G + +P Y
Sbjct: 314 REIGERFTAHFG-CEILDGIGSTE----MLHIFLSNRAGAVEYGTTGRPVPGY 361
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/333 (21%), Positives = 115/333 (34%), Gaps = 30/333 (9%)
Query: 222 PNKVIFMFENTEWTAQQVEAY--SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 279
P + F + E E + S R+A GL + + EN +F LG
Sbjct: 42 PGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGAL 101
Query: 280 KLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXX 339
+GV A N + LL+ +NI+ + + + + L K+
Sbjct: 102 FIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT 161
Query: 340 XXX---XXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIY--TSGTTGLPKAAVI- 393
P +E P S +DK I + +SG+TGLPK +
Sbjct: 162 DYQGFQSMYTFVTSHLPPGFNEYDFVPESFD-----RDKTIALIMNSSGSTGLPKGVALP 216
Query: 394 --------SNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
S+ R G IA + +P +H G +G LI G VV+
Sbjct: 217 HRALAVRFSHARDPIFGNQIAPDTAI------LSVVPFHHGFGMFTTLGY-LISGFRVVL 269
Query: 446 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIW 503
+F + + YK + + +L + + N+ + G L ++
Sbjct: 270 MYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVG 329
Query: 504 SEFVDRFRIAQIGEFYGATEGMAAILDINKSLD 536
RF + I + YG TE +AIL K D
Sbjct: 330 EAVAKRFHLPGIRQGYGLTETTSAILITPKGDD 362
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 23/206 (11%)
Query: 214 FREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVC 273
F+E +P+ + + ++++ +NR+A G KG VAL + E V
Sbjct: 470 FKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVI 529
Query: 274 LWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLF 333
LG+ K G ++ L ++ + + + + + + E+ + E+ + LF
Sbjct: 530 GILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY---TGTTLF 586
Query: 334 XXXXXXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVI 393
E S P+ + + D +YTSGTTG PK +
Sbjct: 587 IDDQTRF-----------------EEQASDPATA--IDPNDPAYIMYTSGTTGKPKGNIT 627
Query: 394 SNHRYYFLGGAIAYQIGFRTKDRFYT 419
++ L + Y + F +D F +
Sbjct: 628 THANIQGLVKHVDY-MAFSDQDTFLS 652
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 111/318 (34%), Gaps = 29/318 (9%)
Query: 238 QVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSL 297
++ A + RVAN +A+GL+ GD VA E E + L+L + G + +N + L
Sbjct: 33 ELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHEL 92
Query: 298 LHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLS 357
+ I A + D + I+ +G+ V+
Sbjct: 93 DYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEA------ 146
Query: 358 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRF 417
+ G D +YTSGTTG A++S+ + F D
Sbjct: 147 -------FATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVL 199
Query: 418 YTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLL 477
LP+YHT G + L ++ F + + +G + LL
Sbjct: 200 IHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG--VPTFYTRLL 257
Query: 478 STPEKPEDKAHNVRLMFGNGLRPQI------WSEFVDRFRIAQIGEFYGATEGMAAILDI 531
+P + ++RL F +G P + WS + E YG TE ++
Sbjct: 258 QSPRLTXETTGHMRL-FISGSAPLLADTHREWSAXTGH----AVLERYGMTE---TNMNT 309
Query: 532 NKSLDVSAVSEGIKKALP 549
+ D V + ALP
Sbjct: 310 SNPYDGDRVPGAVGPALP 327
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 111/318 (34%), Gaps = 29/318 (9%)
Query: 238 QVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSL 297
++ A + RVAN +A+GL+ GD VA E E + L+L + G + +N + L
Sbjct: 33 ELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHEL 92
Query: 298 LHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLS 357
+ I A + D + I+ +G+ V+
Sbjct: 93 DYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEA------ 146
Query: 358 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRF 417
+ G D +YTSGTTG A++S+ + F D
Sbjct: 147 -------FATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVL 199
Query: 418 YTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLL 477
LP+YHT G + L ++ F + + +G + LL
Sbjct: 200 IHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG--VPTFYTRLL 257
Query: 478 STPEKPEDKAHNVRLMFGNGLRPQI------WSEFVDRFRIAQIGEFYGATEGMAAILDI 531
+P + ++RL F +G P + WS + E YG TE ++
Sbjct: 258 QSPRLTXETTGHMRL-FISGSAPLLADTHREWSAXTGH----AVLERYGMTE---TNMNT 309
Query: 532 NKSLDVSAVSEGIKKALP 549
+ D V + ALP
Sbjct: 310 SNPYDGDRVPGAVGPALP 327
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 358 EVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDR 416
+P +P S++ D++ YI ++SGTTG PKA ++ L ++ + F + R
Sbjct: 148 HLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSF-LAFAPQMR 206
Query: 417 FYTPLPLYHTAGGAMCIGQALIFGCCVV 444
F PL A G L GCCV+
Sbjct: 207 FLVNSPLSFDAATLEIWGALLNGGCCVL 234
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 111/318 (34%), Gaps = 29/318 (9%)
Query: 238 QVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSL 297
++ A + RVAN +A+GL+ GD VA E E + L+L + G + +N + L
Sbjct: 33 ELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHEL 92
Query: 298 LHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLS 357
+ I A + D + I+ +G+ V+
Sbjct: 93 DYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLTDAAAGASEA------ 146
Query: 358 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRF 417
+ G D +YTSGTTG A++S+ + F D
Sbjct: 147 -------FATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVL 199
Query: 418 YTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLL 477
LP+YHT G + L ++ F + + +G + LL
Sbjct: 200 IHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMG--VPTFYTRLL 257
Query: 478 STPEKPEDKAHNVRLMFGNGLRPQI------WSEFVDRFRIAQIGEFYGATEGMAAILDI 531
+P + ++RL F +G P + WS + E YG TE ++
Sbjct: 258 QSPRLTXETTGHMRL-FISGSAPLLADTHREWSAXTGH----AVLERYGMTE---TNMNT 309
Query: 532 NKSLDVSAVSEGIKKALP 549
+ D V + ALP
Sbjct: 310 SNPYDGDRVPGAVGPALP 327
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 79/201 (39%), Gaps = 30/201 (14%)
Query: 237 QQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV-----CLWLGLSK--LGVITALIN 289
Q ++A + A L+ LKKGD VAL+ E EFV C + GL L + +
Sbjct: 52 QTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQ 111
Query: 290 HNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXX 349
+ L + +A I G E V + + N +L
Sbjct: 112 RDSWSAKLQGLLASCQPAAIITGDEWLPLV---NAATHDNPELHVLSHA----------- 157
Query: 350 XXXXPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQ 408
+P + ++ + V + + Y+ YTSG+T P+ +I++ AI++
Sbjct: 158 -----WFKALPEA--DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHD 210
Query: 409 -IGFRTKDRFYTPLPLYHTAG 428
I R DR + LP YH G
Sbjct: 211 GIKLRPGDRCVSWLPFYHDXG 231
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 13/165 (7%)
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIA 304
R AN L G+KKGD VA+ + PE L +++G + ++I ++ CI +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDS 178
Query: 305 GVSAFIYGAELTDAVQEI-----------STSLGSNVKLFXXXXXXXXXXXXXXXXXXXX 353
I E A + I + ++ S +
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWR 238
Query: 354 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY 398
L+ + SP + +D L +YTSG+TG PK + + Y
Sbjct: 239 DLIEKA--SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGY 281
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 122/331 (36%), Gaps = 40/331 (12%)
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 277
A +P++ F++ + + T +Q++ S+ +A++ ++ + + +PE + +LG
Sbjct: 11 AAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLG 70
Query: 278 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXX 337
K G ++ ++ D VQ I+ + G+ + L
Sbjct: 71 CVKAGHAYIPVDLSIP----------------------ADRVQRIAENSGAKLLLSATAV 108
Query: 338 XXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS-NH 396
+ + P+ + V + IYTSG+TG PK I+ N
Sbjct: 109 TVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 397 RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC-------VVIR-KK 448
F A+ +T F P M I +L+ G ++ R K
Sbjct: 169 LVSFTKWAVE-DFNLQTGQVFLNQAPFSFDL-SVMDIYPSLVTGGTLWAIDKDMIARPKD 226
Query: 449 FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMFGNGLRPQIWSEF 506
AS SD+ + T EMC S E P K L G L ++ +
Sbjct: 227 LFASLEQSDIQVWTSTPS--FAEMCLMEASFSESMLPNMKTF---LFCGEVLPNEVARKL 281
Query: 507 VDRFRIAQIGEFYGATEGMAAILDINKSLDV 537
++RF A I YG TE A+ I+ + +V
Sbjct: 282 IERFPKATIMNTYGPTEATVAVTGIHVTEEV 312
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 122/331 (36%), Gaps = 40/331 (12%)
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 277
A +P++ F++ + + T +Q++ S+ +A++ ++ + + +PE + +LG
Sbjct: 11 AAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLG 70
Query: 278 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXX 337
K G ++ ++ D VQ I+ + G+ + L
Sbjct: 71 CVKAGHAYIPVDLSIP----------------------ADRVQRIAENSGAKLLLSATAV 108
Query: 338 XXXXXXXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS-NH 396
+ + P+ + V + IYTSG+TG PK I+ N
Sbjct: 109 TVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 397 RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC-------VVIR-KK 448
F A+ +T F P M I +L+ G ++ R K
Sbjct: 169 LVSFTKWAVE-DFNLQTGQVFLNQAPFSFDL-SVMDIYPSLVTGGTLWAIDKDMIARPKD 226
Query: 449 FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMFGNGLRPQIWSEF 506
AS SD+ + T EMC S E P K L G L ++ +
Sbjct: 227 LFASLEQSDIQVWTSTPS--FAEMCLMEASFSESMLPNMKTF---LFCGEVLPNEVARKL 281
Query: 507 VDRFRIAQIGEFYGATEGMAAILDINKSLDV 537
++RF A I YG TE A+ I+ + +V
Sbjct: 282 IERFPKATIMNTYGPTEATVAVTGIHVTEEV 312
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 67/321 (20%), Positives = 113/321 (35%), Gaps = 20/321 (6%)
Query: 222 PNKVIFMFENTEWTAQQVEAY--SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 279
P + F + E E + S R+A GL + + EN +F LG
Sbjct: 37 PGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL 96
Query: 280 KLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXX 339
+GV A N + LL+ +NI+ + + + + L K+
Sbjct: 97 FIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT 156
Query: 340 XXX---XXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIY--TSGTTGLPKAAVIS 394
P +E P S +DK I + +SG+TGLPK +
Sbjct: 157 DYQGFQSMYTFVTSHLPPGFNEYDFVPESFD-----RDKTIALIMNSSGSTGLPKGVALP 211
Query: 395 NHRYYFLGGAIAYQIGFRTK----DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFS 450
HR + + A F + + +P +H G +G LI G VV+ +F
Sbjct: 212 -HRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGY-LICGFRVVLMYRFE 269
Query: 451 ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSEFVD 508
+ + YK + + + + + N+ + G L ++
Sbjct: 270 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
Query: 509 RFRIAQIGEFYGATEGMAAIL 529
RF + I + YG TE +AIL
Sbjct: 330 RFHLPGIRQGYGLTETTSAIL 350
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 67/321 (20%), Positives = 113/321 (35%), Gaps = 20/321 (6%)
Query: 222 PNKVIFMFENTEWTAQQVEAY--SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 279
P + F + E E + S R+A GL + + EN +F LG
Sbjct: 42 PGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL 101
Query: 280 KLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXX 339
+GV A N + LL+ +NI+ + + + + L K+
Sbjct: 102 FIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT 161
Query: 340 XXX---XXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIY--TSGTTGLPKAAVIS 394
P +E P S +DK I + +SG+TGLPK +
Sbjct: 162 DYQGFQSMYTFVTSHLPPGFNEYDFVPESFD-----RDKTIALIMNSSGSTGLPKGVALP 216
Query: 395 NHRYYFLGGAIAYQIGFRTK----DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFS 450
HR + + A F + + +P +H G +G LI G VV+ +F
Sbjct: 217 -HRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGY-LICGFRVVLMYRFE 274
Query: 451 ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSEFVD 508
+ + YK + + + + + N+ + G L ++
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334
Query: 509 RFRIAQIGEFYGATEGMAAIL 529
RF + I + YG TE +AIL
Sbjct: 335 RFHLPGIRQGYGLTETTSAIL 355
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 67/321 (20%), Positives = 113/321 (35%), Gaps = 20/321 (6%)
Query: 222 PNKVIFMFENTEWTAQQVEAY--SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 279
P + F + E E + S R+A GL + + EN +F LG
Sbjct: 37 PGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL 96
Query: 280 KLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXX 339
+GV A N + LL+ +NI+ + + + + L K+
Sbjct: 97 FIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT 156
Query: 340 XXX---XXXXXXXXXXXPLLSEVPTSPPSLSYRVGVQDKLIYIY--TSGTTGLPKAAVIS 394
P +E P S +DK I + +SG+TGLPK +
Sbjct: 157 DYQGFQSMYTFVTSHLPPGFNEYDFVPESFD-----RDKTIALIMNSSGSTGLPKGVALP 211
Query: 395 NHRYYFLGGAIAYQIGFRTK----DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFS 450
HR + + A F + + +P +H G +G LI G VV+ +F
Sbjct: 212 -HRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGY-LICGFRVVLMYRFE 269
Query: 451 ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSEFVD 508
+ + YK + + + + + N+ + G L ++
Sbjct: 270 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
Query: 509 RFRIAQIGEFYGATEGMAAIL 529
RF + I + YG TE +AIL
Sbjct: 330 RFHLPGIRQGYGLTETTSAIL 350
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 16/159 (10%)
Query: 381 TSGTTGLPKAAVISNH----RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQA 436
+SG+TGLPK +++ R+ I Y T +P +H G +G
Sbjct: 200 SSGSTGLPKGVQLTHENIVTRFSHARDPI-YGNQVSPGTAVLTVVPFHHGFGMFTTLGY- 257
Query: 437 LIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE-----DKAHNVR 491
LI G VV+ KF + + YKCT I + L + K E D ++ V
Sbjct: 258 LICGFRVVMLTKFDEETFLKTLQDYKCT--SVI--LVPTLFAILNKSELLNKYDLSNLVE 313
Query: 492 LMFGNG-LRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL 529
+ G L ++ RF + + + YG TE +AI+
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII 352
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 16/159 (10%)
Query: 381 TSGTTGLPKAAVISNH----RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQA 436
+SG+TGLPK +++ R+ I Y T +P +H G +G
Sbjct: 200 SSGSTGLPKGVQLTHENIVTRFSHARDPI-YGNQVSPGTAVLTVVPFHHGFGMFTTLGY- 257
Query: 437 LIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE-----DKAHNVR 491
LI G VV+ KF + + YKCT I + L + K E D ++ V
Sbjct: 258 LICGFRVVMLTKFDEETFLKTLQDYKCT--SVI--LVPTLFAILNKSELLNKYDLSNLVE 313
Query: 492 LMFGNG-LRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL 529
+ G L ++ RF + + + YG TE +AI+
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII 352
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 16/159 (10%)
Query: 381 TSGTTGLPKAAVISNH----RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQA 436
+SG+TGLPK +++ R+ I Y T +P +H G +G
Sbjct: 200 SSGSTGLPKGVQLTHENIVTRFSHARDPI-YGNQVSPGTAVLTVVPFHHGFGMFTTLGY- 257
Query: 437 LIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE-----DKAHNVR 491
LI G VV+ KF + + YKCT I + L + K E D ++ V
Sbjct: 258 LICGFRVVMLTKFDEETFLKTLQDYKCT--NVI--LVPTLFAILNKSELLNKYDLSNLVE 313
Query: 492 LMFGNG-LRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL 529
+ G L ++ RF + + + YG TE +AI+
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAII 352
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 200 ARRVAQK----DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGL 255
ARR +K DL + DI HA + + + + + + +++ ++ +A QG+
Sbjct: 15 ARRYREKGYWQDLPLTDILTRHA--ASDSIAVIDGERQLSYRELNQAADNLACSLRRQGI 72
Query: 256 KKGDSVALMLENRPEFVCLWLGLSKLGV--ITALINHN 291
K G++ + L N E + L KLGV + AL +H
Sbjct: 73 KPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110
>pdb|3LRV|A Chain A, The Prp19 Wd40 Domain Contains A Conserved Protein
Interaction Region Essential For Its Function
Length = 343
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 177 RTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTE 233
RTG PA+ SR L L+ ++ D + RE V S N++I+M+ + E
Sbjct: 80 RTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNE 136
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 63/165 (38%), Gaps = 35/165 (21%)
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA---MC--- 432
+YTSG+TG PK +S H A IG P GG +C
Sbjct: 181 LYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIG--------NVAPKSLELGGVGKFLCLAS 232
Query: 433 ------IGQALI---FGCCVVIRKKFSASNYFSDVCKYKCTVG-QYIGEMCRYLLSTPEK 482
IG+ + FG C V ++ S D+ + +G + G + L T
Sbjct: 233 RAFDVHIGEXFLAWRFGLCAVTGERLSX---LDDLPRTFRELGVTHAGIVPSLLDQTGLV 289
Query: 483 PEDKAHNVRL-MFGNGLRP---QIWSEFVDRFRIAQIGEFYGATE 523
PED H V L + G P QIWS DR + + YG TE
Sbjct: 290 PEDAPHLVYLGVGGEKXTPRTQQIWSS-SDRVALVNV---YGPTE 330
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288
R AN L G+KKGD VA+ + PE L +++G + ++I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 162
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288
R AN L G+KKGD VA+ + PE L +++G + ++I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 162
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288
R AN L G+KKGD VA+ + PE L +++G + ++I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 162
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288
R AN L G+KKGD VA+ + PE L +++G + ++I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 162
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288
R AN L G+KKGD VA+ + PE L +++G + ++I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 162
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288
R AN L G+KKGD VA+ + PE L +++G + ++I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 162
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 72/202 (35%), Gaps = 17/202 (8%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T +V + R+ A G+ GD VA + N + + + +G + N L
Sbjct: 49 TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSP 108
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXP 354
+ + +N A ++ L V+ I L V+ F
Sbjct: 109 KEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL-KTVQHFVVMDEKAPEGY---------- 157
Query: 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR---YYFLGGAIAYQIGF 411
L E + RV + YT+GTTGLPK V S HR + L ++
Sbjct: 158 LAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYS-HRALVLHSLAASLVDGTAL 216
Query: 412 RTKDRFYTPLPLYHTAGGAMCI 433
KD +P++H A C+
Sbjct: 217 SEKDVVLPVVPMFHV--NAWCL 236
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 135 GYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 180
GY +++ + T D F +GD+ V D+ GY+ KDR D
Sbjct: 396 GYYGNEEATRSALTP-----DGFFRTGDIAVWDEEGYVEIKDRLKD 436
>pdb|1VPA|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase (Tm1393) From Thermotoga Maritima
At 2.67 A Resolution
pdb|1VPA|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase (Tm1393) From Thermotoga Maritima
At 2.67 A Resolution
Length = 234
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 24/137 (17%)
Query: 491 RLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMA---AILDI-----NKSLDVSAVSE 542
R++F L + SE +D I E++ E +L I +S V + E
Sbjct: 41 RMLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVFHEKVLGIVEGGDTRSQSVRSALE 100
Query: 543 GIKKALPSY------ARPLFIR------CLREVEMTGTYKLKKLDLQKEGFDPNVIQDRL 590
++K PSY ARP F+R LR TG L L+ V DR+
Sbjct: 101 FLEKFSPSYVLVHDSARP-FLRKKHVSEVLRRARETGAATLA---LKNSDALVRVENDRI 156
Query: 591 YYLSSKGVYEELTPEVY 607
Y+ KGVY LTP+ +
Sbjct: 157 EYIPRKGVYRILTPQAF 173
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 19/242 (7%)
Query: 243 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCIN 302
+ ++A+ +G++KG+ V + + N ++V L ++ IN + L H +N
Sbjct: 62 TKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILN 121
Query: 303 IAGVSAFIYGAELTDAVQEISTSLGSNVKLFXXXXXXXXXXXXXXXXXXXXPLLSEVPTS 362
+ + + + L + + + G ++F LSEV S
Sbjct: 122 DSEATTLVVHSXLYENFKPVLEKTGVE-RVFVVGGEVNS--------------LSEVXDS 166
Query: 363 PPSLSYRVGV---QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYT 419
V V +D + YT GTTG PK +++ +A G D
Sbjct: 167 GSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVG 226
Query: 420 PLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLST 479
P +H+A + + + G V+ F+ ++ KYK T + L++T
Sbjct: 227 CXPXFHSAEFGL-VNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNT 285
Query: 480 PE 481
E
Sbjct: 286 LE 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,896,466
Number of Sequences: 62578
Number of extensions: 745624
Number of successful extensions: 1893
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1776
Number of HSP's gapped (non-prelim): 113
length of query: 617
length of database: 14,973,337
effective HSP length: 105
effective length of query: 512
effective length of database: 8,402,647
effective search space: 4302155264
effective search space used: 4302155264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)