Query psy8155
Match_columns 617
No_of_seqs 429 out of 2896
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 20:01:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 6.9E-77 2.4E-81 715.0 18.0 549 29-617 270-871 (1304)
2 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.3E-57 7.7E-62 498.9 35.2 389 206-617 23-440 (539)
3 3ni2_A 4-coumarate:COA ligase; 100.0 4.7E-58 1.6E-62 504.2 29.1 392 205-617 19-444 (536)
4 4dg8_A PA1221; ANL superfamily 100.0 2.3E-58 7.8E-63 513.2 26.7 376 203-617 22-429 (620)
5 3o83_A Peptide arylation enzym 100.0 9.1E-57 3.1E-61 494.6 38.2 395 204-617 26-449 (544)
6 3r44_A Fatty acyl COA syntheta 100.0 7.8E-58 2.7E-62 500.0 28.8 395 197-617 5-423 (517)
7 3rix_A Luciferase, luciferin 4 100.0 2.4E-56 8.2E-61 492.1 36.6 396 206-617 18-449 (550)
8 3g7s_A Long-chain-fatty-acid-- 100.0 7.2E-57 2.5E-61 496.1 30.2 391 205-617 16-449 (549)
9 3ivr_A Putative long-chain-fat 100.0 1.1E-55 3.7E-60 482.5 36.3 383 206-617 4-410 (509)
10 1t5h_X 4-chlorobenzoyl COA lig 100.0 6.9E-56 2.3E-60 483.4 33.9 382 208-617 2-412 (504)
11 3rg2_A Enterobactin synthase c 100.0 4.5E-56 1.5E-60 496.3 32.9 391 203-617 22-444 (617)
12 1v25_A Long-chain-fatty-acid-C 100.0 3.1E-56 1.1E-60 490.0 30.3 389 207-617 17-445 (541)
13 4fuq_A Malonyl COA synthetase; 100.0 2.1E-55 7.3E-60 479.1 34.2 379 212-617 4-409 (503)
14 1amu_A GRSA, gramicidin synthe 100.0 7.8E-56 2.7E-60 488.5 30.6 403 175-617 6-440 (563)
15 3etc_A AMP-binding protein; ad 100.0 4E-55 1.4E-59 484.3 34.7 397 205-617 52-485 (580)
16 3tsy_A Fusion protein 4-coumar 100.0 1E-55 3.4E-60 518.6 31.6 448 144-617 9-491 (979)
17 1ry2_A Acetyl-coenzyme A synth 100.0 2.1E-55 7.3E-60 493.4 32.7 400 208-617 82-536 (663)
18 2d1s_A Luciferase, luciferin 4 100.0 6E-55 2.1E-59 480.3 35.6 389 208-617 25-451 (548)
19 1pg4_A Acetyl-COA synthetase; 100.0 2.2E-55 7.5E-60 493.0 32.6 399 209-617 77-527 (652)
20 3fce_A D-alanine--poly(phospho 100.0 7.2E-56 2.4E-60 484.3 26.1 378 208-617 1-409 (512)
21 4gr5_A Non-ribosomal peptide s 100.0 5.2E-55 1.8E-59 483.3 31.7 374 205-617 72-479 (570)
22 3c5e_A Acyl-coenzyme A synthet 100.0 3.3E-54 1.1E-58 476.2 34.7 390 209-617 39-466 (570)
23 2v7b_A Benzoate-coenzyme A lig 100.0 1E-53 3.4E-58 469.3 34.4 389 209-617 25-439 (529)
24 3e7w_A D-alanine--poly(phospho 100.0 1E-53 3.5E-58 467.0 30.6 379 208-617 1-408 (511)
25 3l8c_A D-alanine--poly(phospho 100.0 6.8E-54 2.3E-58 469.8 28.1 378 207-617 3-413 (521)
26 3kxw_A Saframycin MX1 syntheta 100.0 2E-54 6.7E-59 481.5 23.2 388 205-617 8-468 (590)
27 3t5a_A Long-chain-fatty-acid-- 100.0 2.3E-52 7.8E-57 453.2 28.9 305 204-529 20-359 (480)
28 3ipl_A 2-succinylbenzoate--COA 100.0 2.5E-52 8.4E-57 455.2 28.4 354 208-581 1-496 (501)
29 3gqw_A Fatty acid AMP ligase; 100.0 6.6E-52 2.3E-56 459.9 27.6 386 203-617 16-471 (576)
30 3ite_A SIDN siderophore synthe 100.0 1.3E-51 4.5E-56 455.7 28.1 379 203-617 15-437 (562)
31 3nyq_A Malonyl-COA ligase; A/B 100.0 8.5E-53 2.9E-57 458.6 15.1 367 206-617 20-416 (505)
32 4gs5_A Acyl-COA synthetase (AM 100.0 6E-34 2E-38 295.5 15.9 202 372-579 36-351 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 3.7E-32 1.3E-36 290.5 10.7 235 369-617 81-341 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 5.9E-32 2E-36 289.6 9.2 234 369-617 88-345 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 7.7E-31 2.6E-35 280.4 12.3 234 369-617 86-343 (437)
36 3hgu_A EHPF; phenazine, antibi 99.9 1.1E-25 3.9E-30 234.8 12.0 235 370-615 88-368 (369)
37 2jgp_A Tyrocidine synthetase 3 99.6 1.7E-16 5.8E-21 173.1 -1.8 153 29-185 345-520 (520)
38 4hvm_A Tlmii; PSI-biology, mid 99.4 2.1E-15 7.2E-20 163.2 -7.1 166 29-200 270-486 (493)
39 1l5a_A Amide synthase, VIBH; n 99.3 3.5E-14 1.2E-18 151.0 -6.7 144 32-182 252-418 (436)
40 2xhg_A Tyrocidine synthetase A 98.8 1E-10 3.4E-15 125.4 -4.2 138 29-167 276-450 (466)
41 1q9j_A PAPA5, polyketide synth 98.5 6.7E-09 2.3E-13 109.5 -1.9 58 31-95 257-321 (422)
42 1mdb_A 2,3-dihydroxybenzoate-A 98.4 3.4E-06 1.2E-10 91.7 14.5 314 221-579 180-528 (539)
43 3rg2_A Enterobactin synthase c 98.3 4E-06 1.4E-10 92.8 12.7 97 221-321 182-290 (617)
44 3o83_A Peptide arylation enzym 98.1 6.3E-06 2.1E-10 89.8 10.4 97 221-321 189-297 (544)
45 3nyq_A Malonyl-COA ligase; A/B 97.9 6.9E-06 2.4E-10 88.6 5.1 85 495-579 413-505 (505)
46 3r44_A Fatty acyl COA syntheta 97.9 9.3E-06 3.2E-10 87.8 5.4 85 495-579 420-510 (517)
47 4fuq_A Malonyl COA synthetase; 97.9 1.4E-05 4.8E-10 86.1 6.8 87 495-581 406-499 (503)
48 3ni2_A 4-coumarate:COA ligase; 97.8 1.5E-05 5.1E-10 86.6 6.6 85 495-579 441-532 (536)
49 1t5h_X 4-chlorobenzoyl COA lig 97.8 1.9E-05 6.7E-10 85.0 6.1 85 495-579 409-501 (504)
50 3g7s_A Long-chain-fatty-acid-- 97.7 1.3E-05 4.5E-10 87.3 4.1 96 223-322 180-285 (549)
51 4gs5_A Acyl-COA synthetase (AM 97.7 2.2E-06 7.5E-11 88.1 -3.2 38 575-617 223-260 (358)
52 1amu_A GRSA, gramicidin synthe 97.7 1.8E-05 6.1E-10 86.6 3.7 87 495-581 437-528 (563)
53 3ipl_A 2-succinylbenzoate--COA 97.7 1.8E-06 6.1E-11 93.1 -4.4 46 568-617 360-408 (501)
54 3l8c_A D-alanine--poly(phospho 97.6 5.6E-05 1.9E-09 81.7 6.3 98 221-319 143-252 (521)
55 3ivr_A Putative long-chain-fat 97.6 9.3E-06 3.2E-10 87.6 0.0 87 495-581 407-500 (509)
56 3e7w_A D-alanine--poly(phospho 97.5 6.6E-05 2.2E-09 81.0 6.1 96 221-319 141-248 (511)
57 2d1s_A Luciferase, luciferin 4 97.5 9E-05 3.1E-09 80.6 6.9 85 495-579 448-540 (548)
58 3fce_A D-alanine--poly(phospho 97.5 6.9E-05 2.3E-09 80.8 5.9 97 220-319 141-249 (512)
59 4gr5_A Non-ribosomal peptide s 97.5 1.4E-05 4.8E-10 87.5 0.0 97 221-321 212-319 (570)
60 2v7b_A Benzoate-coenzyme A lig 97.5 9.9E-05 3.4E-09 79.9 6.5 84 495-578 436-528 (529)
61 2vsq_A Surfactin synthetase su 97.4 6.4E-05 2.2E-09 90.4 4.7 85 495-580 868-958 (1304)
62 4eql_A 4-substituted benzoates 97.4 5.7E-05 2E-09 81.1 3.6 37 580-617 396-435 (581)
63 1pg4_A Acetyl-COA synthetase; 97.4 0.00014 4.9E-09 80.8 6.2 100 495-595 524-634 (652)
64 4b2g_A GH3-1 auxin conjugating 97.3 9.2E-05 3.1E-09 79.7 3.9 37 580-617 408-447 (609)
65 3etc_A AMP-binding protein; ad 97.3 0.00013 4.4E-09 80.0 5.1 85 495-579 482-576 (580)
66 3c5e_A Acyl-coenzyme A synthet 97.3 0.00011 3.7E-09 80.4 3.8 87 495-581 463-561 (570)
67 1v25_A Long-chain-fatty-acid-C 97.2 4E-05 1.4E-09 83.3 -1.0 85 495-579 442-533 (541)
68 1ry2_A Acetyl-coenzyme A synth 97.2 0.00041 1.4E-08 77.2 7.1 100 495-595 533-650 (663)
69 4epl_A Jasmonic acid-amido syn 97.2 0.0002 6.7E-09 76.9 4.0 37 580-617 403-442 (581)
70 3tsy_A Fusion protein 4-coumar 97.1 8.7E-05 3E-09 86.7 0.0 101 220-321 222-334 (979)
71 3qov_A Phenylacetate-coenzyme 96.9 0.0017 5.9E-08 68.2 8.1 90 232-322 104-195 (436)
72 4dg8_A PA1221; ANL superfamily 96.9 0.00019 6.5E-09 79.2 0.6 97 221-321 162-269 (620)
73 3ite_A SIDN siderophore synthe 96.9 0.00016 5.6E-09 78.8 0.0 88 232-319 193-286 (562)
74 3rix_A Luciferase, luciferin 4 96.6 0.00031 1.1E-08 76.4 0.0 99 222-321 189-297 (550)
75 3gqw_A Fatty acid AMP ligase; 95.4 0.0059 2E-07 66.5 2.6 97 221-319 174-284 (576)
76 3kxw_A Saframycin MX1 syntheta 94.7 0.011 3.8E-07 64.5 2.6 99 220-321 164-276 (590)
77 2y27_A Phenylacetate-coenzyme 90.5 2 6.8E-05 44.5 12.5 89 233-322 109-199 (437)
78 2y4o_A Phenylacetate-coenzyme 90.0 2.2 7.6E-05 44.2 12.3 89 233-322 111-201 (443)
79 3gxs_A Phenylacetate-coenzyme 87.0 0.31 1.1E-05 39.8 2.5 76 495-573 11-101 (109)
80 3lax_A Phenylacetate-coenzyme 85.6 0.31 1.1E-05 39.7 1.8 76 495-573 11-101 (109)
81 3hgu_A EHPF; phenazine, antibi 74.2 11 0.00036 37.8 9.2 86 232-319 109-219 (369)
82 3t5a_A Long-chain-fatty-acid-- 73.7 30 0.001 35.7 13.0 104 371-477 37-147 (480)
83 3tbh_A O-acetyl serine sulfhyd 46.1 1.4E+02 0.0049 29.1 11.3 67 248-314 60-127 (334)
84 3ju7_A Putative PLP-dependent 34.7 2.8E+02 0.0097 27.2 11.7 61 249-312 69-136 (377)
85 3dzz_A Putative pyridoxal 5'-p 31.9 3.6E+02 0.012 26.1 15.0 55 255-312 106-167 (391)
86 3vc3_A Beta-cyanoalnine syntha 29.8 1.8E+02 0.0062 28.4 9.0 70 245-314 73-142 (344)
87 4eez_A Alcohol dehydrogenase 1 28.3 1.2E+02 0.0042 29.4 7.5 61 250-313 156-216 (348)
88 3euc_A Histidinol-phosphate am 24.2 4.8E+02 0.016 25.0 13.8 55 255-312 106-164 (367)
89 3p9z_A Uroporphyrinogen III co 23.2 4.1E+02 0.014 23.9 10.6 65 374-462 161-225 (229)
90 4aec_A Cysteine synthase, mito 23.0 4.9E+02 0.017 26.3 10.9 64 250-313 165-229 (430)
91 1y7l_A O-acetylserine sulfhydr 22.9 4.9E+02 0.017 24.7 11.0 65 249-314 52-117 (316)
92 1o69_A Aminotransferase; struc 22.6 2.1E+02 0.0072 28.2 8.2 75 377-470 49-130 (394)
93 1h2b_A Alcohol dehydrogenase; 22.6 5.2E+02 0.018 25.0 11.0 59 253-314 182-240 (359)
94 3jv7_A ADH-A; dehydrogenase, n 21.8 2.9E+02 0.0099 26.7 8.9 57 254-313 168-224 (345)
95 1z7w_A Cysteine synthase; tran 21.8 5.3E+02 0.018 24.6 11.3 65 250-314 57-122 (322)
96 3s2e_A Zinc-containing alcohol 21.3 2.4E+02 0.0082 27.2 8.1 60 250-313 159-218 (340)
97 2bkw_A Alanine-glyoxylate amin 21.1 5.5E+02 0.019 24.6 11.0 51 412-466 84-141 (385)
98 3kgw_A Alanine-glyoxylate amin 21.1 3.4E+02 0.012 26.2 9.4 75 378-470 77-156 (393)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=6.9e-77 Score=715.01 Aligned_cols=549 Identities=15% Similarity=0.117 Sum_probs=434.8
Q ss_pred EEEeccCCCccccCCCC--CcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-------ccC
Q psy8155 29 IIRVDPVTSEPIRNKKG--LCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF-------LSD 99 (617)
Q Consensus 29 ~~~~D~~~G~pva~R~~--~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf-------~~~ 99 (617)
..+.|+++|+|++||.. .+. +++||+|+||||+|++++++.||.++|+++++..+++++||++|| ..+
T Consensus 270 tg~~dvv~G~pvsgR~~~~~~~---~~~vG~fvntlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~i~~~l~~~ 346 (1304)
T 2vsq_A 270 QQSGDLAFGTVVSGRPAEIKGV---EHMVGLFINVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYDIQSQADQP 346 (1304)
T ss_dssp HTCSEEEEEEEECCCCTTSTTG---GGCCSSCCEEEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHHHHHSSSCS
T ss_pred cCCCCEEEEEEeCCCCccchhh---hcccccceeEEEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHHHHHHhCCC
Confidence 45679999999999986 666 999999999999999999999999999999999999999999999 234
Q ss_pred CCCccccCcCCcc--c-c----CCCCccccccCCCCCccccccccccccc----chhhhhhhhhccchhhhcccEEEEec
Q psy8155 100 PPKNTTYNKKGLC--S-R----CEPGVFIGKIVPSNPARAYLGYVNEKDS----AKKIFTDVFEIGDSAFLSGDLLVMDK 168 (617)
Q Consensus 100 ~~r~~~~~~l~~~--~-~----~~~gl~~~~~~~~~~~~~dl~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~~~~ 168 (617)
|.++++++..... . . ...|+.+........++|||++.+.+.+ ..+|++++|+.++++++..+|..++
T Consensus 347 ~lf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~dL~l~~~~~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL- 425 (1304)
T 2vsq_A 347 KLIDHIIVFENYPLQDAKNEESSENGFDMVDVHVFEKSNYDLNLMASPGDEMLIKLAYNENVFDEAFILRLKSQLLTAI- 425 (1304)
T ss_dssp SSCCCEEEECSSCHHHHSCCCHHHHSEEEEEEEECCCCCSSEEEEEECSSSCEEEEEEETTTSCHHHHHHHHHHHHHHH-
T ss_pred cccceeEEEeecccccccccccccCCceeEeeecccccccCeEEEEecCCcEEEEEEECCccCCHHHHHHHHHHHHHHH-
Confidence 4455444332211 0 0 0124434332223678999999887644 3589999999999999999999888
Q ss_pred cccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHH
Q psy8155 169 WGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVAN 248 (617)
Q Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~ 248 (617)
..++.+|+.++.++++++++|+++++..|+.+.... +..+++++|+++++++|+++|++++++++||+||+++++++|+
T Consensus 426 ~~l~~~p~~~~~~~~~l~~~e~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~ 504 (1304)
T 2vsq_A 426 QQLIQNPDQPVSTINLVDDREREFLLTGLNPPAQAH-ETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIAR 504 (1304)
T ss_dssp HHHHHSTTSBGGGCCCCCHHHHHHHHTTTSCCCCCC-CCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHH
T ss_pred HHhccCccccccccCCCCHHHHHHHHHhcCCCCCCC-CCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHH
Confidence 677889999999999999999998887776654443 3479999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCC
Q psy8155 249 FFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS 328 (617)
Q Consensus 249 ~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~ 328 (617)
+|++.|+++|++|+|+++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++.+..+.+. .++.
T Consensus 505 ~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~ 580 (1304)
T 2vsq_A 505 RLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPY 580 (1304)
T ss_dssp HHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCC
T ss_pred HHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987543221 1222
Q ss_pred CeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH
Q psy8155 329 NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ 408 (617)
Q Consensus 329 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~ 408 (617)
....+.+++.. .. ... .. .......|+++|||+|||||||+||||+++|+++.+. .+....
T Consensus 581 ~~~~~~~~~~~--------------~~-~~~-~~--~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~ 641 (1304)
T 2vsq_A 581 TGTTLFIDDQT--------------RF-EEQ-AS--DPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDY 641 (1304)
T ss_dssp CSEEEESSCGG--------------GG-GSC-SS--CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCS
T ss_pred CCcEEEecccc--------------cc-ccc-cC--CCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHh
Confidence 22333333210 00 111 11 1112457899999999999999999999999999986 555567
Q ss_pred hCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCC
Q psy8155 409 IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPED 485 (617)
Q Consensus 409 ~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~ 485 (617)
++++++|++++++|++|+.+ ++++|.+|+.|+++++.+. .++..+.+.|++++||++.++|++++.|.+.. ..
T Consensus 642 ~~~~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~ 717 (1304)
T 2vsq_A 642 MAFSDQDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---ED 717 (1304)
T ss_dssp SCCCTTCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SH
T ss_pred cCCCCCCEEEEECCccHHHH-HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hh
Confidence 78899999999999999887 5899999999999999874 79999999999999999999999999998643 22
Q ss_pred ccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe---CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEe
Q psy8155 486 KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL---DINKSLDVSAVSEGIKKALPSYARPLFIRCL 560 (617)
Q Consensus 486 ~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~---~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~ 560 (617)
.+++||.++ ||+++++++++|.+.++..+++|.|||||++..+. .......... ..++..+|. ..+.++
T Consensus 718 ~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~--~~iG~p~~~----~~~~i~ 791 (1304)
T 2vsq_A 718 WMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISS--LPIGKPISN----ASVYIL 791 (1304)
T ss_dssp HHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSS--CCCBEECTT----EEEEEE
T ss_pred cCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCC--CCCceeeCC----CEEEEE
Confidence 467888776 89999999999999988668999999999964332 1110000000 001111111 123333
Q ss_pred ec------------c----cCCccchhhhHHHhhcCC---------CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCc
Q psy8155 561 RE------------V----EMTGTYKLKKLDLQKEGF---------DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNI 615 (617)
Q Consensus 561 ~~------------l----P~t~~GK~dr~~L~~~g~---------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~ 615 (617)
++ + |--..|++++..++++.| .||+||| +|++++| |+|+|+||+|||||++|+
T Consensus 792 d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGD-l~~~~~d-G~l~~~GR~d~qvki~G~ 869 (1304)
T 2vsq_A 792 NEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGD-LARWLPD-GTIEYAGRIDDQVKIRGH 869 (1304)
T ss_dssp CTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEE-EEEECTT-SCEEEEEEGGGEEEETTE
T ss_pred CCCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCC-eEEEcCC-CeEEEEcCCCCEEEECCE
Confidence 22 1 334567888887775544 1488999 9999998 999999999999999999
Q ss_pred CC
Q psy8155 616 RL 617 (617)
Q Consensus 616 ~v 617 (617)
||
T Consensus 870 ri 871 (1304)
T 2vsq_A 870 RI 871 (1304)
T ss_dssp EE
T ss_pred ee
Confidence 86
No 2
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.3e-57 Score=498.87 Aligned_cols=389 Identities=16% Similarity=0.242 Sum_probs=310.6
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
...|+.++|+++++++|+++|+++.++++||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+++|+++
T Consensus 23 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 102 (539)
T 1mdb_A 23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (539)
T ss_dssp CSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred cCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEEccchH-----HHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCC
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIYGAELT-----DAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVP 360 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (617)
||++|.++.+++.+++++++++++|++++.. +.+..+...++....++..++. ..+.++.....
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 171 (539)
T 1mdb_A 103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHT 171 (539)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCC
T ss_pred ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhccc
Confidence 9999999999999999999999999987532 2334444444433334443321 11222222111
Q ss_pred CCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHH-HHHHHhHc
Q psy8155 361 TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM-CIGQALIF 439 (617)
Q Consensus 361 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~~L~~ 439 (617)
.. ...+...++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++.. +++.+|+.
T Consensus 172 ~~--~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 249 (539)
T 1mdb_A 172 EP--VKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYA 249 (539)
T ss_dssp CC--CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred cc--cccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHh
Confidence 11 1123457899999999999999999999999999999999888999999999999999999988644 68899999
Q ss_pred CcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccc
Q psy8155 440 GCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGE 517 (617)
Q Consensus 440 G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n 517 (617)
|+++++.+.+++..+++.|+++++|++.++|+++..|++.......++++||.++ ||++++++.++|.+.++. +++|
T Consensus 250 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~-~~~~ 328 (539)
T 1mdb_A 250 GGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQQ 328 (539)
T ss_dssp TCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCS-EEEE
T ss_pred CCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCC-cEEE
Confidence 9999999999999999999999999999999999999876544455788999886 888999999999999976 7999
Q ss_pred cccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHHHh----
Q psy8155 518 FYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLDLQ---- 577 (617)
Q Consensus 518 ~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~L~---- 577 (617)
.||+||+.+.+...... .......++..+|.+. .+.++++ + |....|+.++.+.+
T Consensus 329 ~YG~TE~~~~~~~~~~~--~~~~~~~~G~p~~~~~---~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f 403 (539)
T 1mdb_A 329 VFGMAEGLVNYTRLDDP--EEIIVNTQGKPMSPYD---ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASF 403 (539)
T ss_dssp EEECTTSCEEECCTTSC--HHHHHHCCCEESSTTC---EEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHB
T ss_pred EEcCCCCcccccCCCCc--HHhcCCCCCcccCCCc---eEEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhc
Confidence 99999976554432211 1111112222232211 2333321 1 23335666555443
Q ss_pred -hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 578 -KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 578 -~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+|| |+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 404 ~~~g~--~~TGD-lg~~~~d-G~l~~~GR~dd~ik~~G~~v 440 (539)
T 1mdb_A 404 TEDGF--YRTGD-IVRLTRD-GYIVVEGRAKDQINRGGEKV 440 (539)
T ss_dssp CTTSC--EEEEE-EEEECTT-SCEEEEEEGGGCEECSSCEE
T ss_pred cCCCC--eecCc-eEEECCC-CcEEEeccccceEEECCEEE
Confidence 5677 88999 9999998 99999999999999999986
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4.7e-58 Score=504.17 Aligned_cols=392 Identities=19% Similarity=0.266 Sum_probs=316.3
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
+...|++++|.++++++|+++|+++. ++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~G 98 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRG 98 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhC
Confidence 44589999999999999999999996 6899999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (617)
++++|+||.++.+++.+++++++++++|++....+.+....... ..+++.++..... ...+.++.......
T Consensus 99 av~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 169 (536)
T 3ni2_A 99 AIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DVKVMCVDSAPDG-------CLHFSELTQADENE 169 (536)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TCEEEESSCCCTT-------CEETHHHHTSCGGG
T ss_pred CEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--CceEEEecCCCCC-------ccCHHHHhhccccc
Confidence 99999999999999999999999999999998888777665543 3456666543221 33344444332221
Q ss_pred CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHH----HhCCCCCCEEEEcCcchhhHHHHHHHHHHhH
Q psy8155 363 PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY----QIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438 (617)
Q Consensus 363 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~ 438 (617)
. .....+++++|||+|||||||+||||+++|+++.+.+.+... .+++.++|++++.+|++|+.++...++.+|.
T Consensus 170 ~--~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~ 247 (536)
T 3ni2_A 170 A--PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLR 247 (536)
T ss_dssp C--CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHH
T ss_pred c--ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHh
Confidence 1 123457899999999999999999999999999988776554 3568899999999999999997677889999
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccc
Q psy8155 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIG 516 (617)
Q Consensus 439 ~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~ 516 (617)
.|+++++.+++++..+++.|+++++|++.++|+++..|++.......++++||.++ ||++++++.++|.+.++..+++
T Consensus 248 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~ 327 (536)
T 3ni2_A 248 VGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLG 327 (536)
T ss_dssp HTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEE
T ss_pred cCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCcc
Confidence 99999999999999999999999999999999999999998776677889999887 8889999999999999767899
Q ss_pred ccccccccceEEeC----CCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----c------------cCCccchhhhHH
Q psy8155 517 EFYGATEGMAAILD----INKSLDVSAVSEGIKKALPSYARPLFIRCLRE-----V------------EMTGTYKLKKLD 575 (617)
Q Consensus 517 n~YG~TE~~~~v~~----~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----l------------P~t~~GK~dr~~ 575 (617)
|.||+||+...+.. ........ ...++..+|.. .+.+++. + |....|+.++..
T Consensus 328 ~~YG~TE~~~~~~~~~~~~~~~~~~~--~~~~G~~~~~~----~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~ 401 (536)
T 3ni2_A 328 QGYGMTEAGPVLAMCLAFAKEPFDIK--PGACGTVVRNA----EMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPE 401 (536)
T ss_dssp EEEECGGGSSEEEECGGGSSSCCCCC--TTCCCEECSSC----EEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHH
T ss_pred ccccccccchhhhcccccCCccccCC--CCCeeEeCCCc----EEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChh
Confidence 99999999654331 11110000 00011122211 2333331 1 333456665544
Q ss_pred Hh-----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 576 LQ-----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 576 L~-----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+ .+|| |+||| +|++|+| |+++|+||+||+||++|+||
T Consensus 402 ~t~~~~~~~g~--~~TGD-l~~~~~d-G~l~~~GR~dd~ik~~G~~v 444 (536)
T 3ni2_A 402 ATSRTIDKEGW--LHTGD-IGYIDDD-DELFIVDRLKELIKYKGFQV 444 (536)
T ss_dssp HHHHHBCTTSC--EEEEE-EEEECTT-SCEEEEEECSCCEEETTEEE
T ss_pred HHHhhccCCCc--eEccc-EEEEcCC-ceEEEEecccceEEECCEEE
Confidence 43 5677 88999 9999998 99999999999999999986
No 4
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.3e-58 Score=513.25 Aligned_cols=376 Identities=15% Similarity=0.081 Sum_probs=295.4
Q ss_pred hhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 203 VAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 203 ~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
......|++++|+++|+++|+++|++++++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+|+|
T Consensus 22 ~~~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaG 101 (620)
T 4dg8_A 22 DLYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSG 101 (620)
T ss_dssp SGGGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (617)
++|||+||.+|.+++.++++++++++++++....... .....+.+.. . ....
T Consensus 102 a~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~~~~~-----------------~---~~~~ 153 (620)
T 4dg8_A 102 HHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCVPVRH-----------------L---PAAP 153 (620)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEEEGGG-----------------C---CCCC
T ss_pred CEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCceeeecc-----------------C---CcCC
Confidence 9999999999999999999999999999765432110 0011111110 0 0111
Q ss_pred CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcE
Q psy8155 363 PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC 442 (617)
Q Consensus 363 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~ 442 (617)
.....+...++++|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+. +++|.+|+.|++
T Consensus 154 ~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~ 231 (620)
T 4dg8_A 154 ASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGC 231 (620)
T ss_dssp CCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCE
T ss_pred ccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCE
Confidence 111223456899999999999999999999999999887766 557789999999999999999984 889999999999
Q ss_pred EEEcC--CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccc
Q psy8155 443 VVIRK--KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEF 518 (617)
Q Consensus 443 lvi~~--~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~ 518 (617)
+++.+ .+++..+++.|+++++|++.++|++++.|++.. ...+++||.++ ||+++++++++|.+.++..+++|.
T Consensus 232 ~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 308 (620)
T 4dg8_A 232 CVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNG 308 (620)
T ss_dssp EEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred EEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEee
Confidence 99975 589999999999999999999999999998643 34578899877 889999999999998877789999
Q ss_pred ccccccceEEe---CCCCCCCHHHHHHHHhhcCCC---------------CCcCcEEEEeecccCCccchhhhHHHhhcC
Q psy8155 519 YGATEGMAAIL---DINKSLDVSAVSEGIKKALPS---------------YARPLFIRCLREVEMTGTYKLKKLDLQKEG 580 (617)
Q Consensus 519 YG~TE~~~~v~---~~~~~~~~~~l~~~l~~~Lp~---------------~~~P~~~~~~~~lP~t~~GK~dr~~L~~~g 580 (617)
||+||+..... ......... ...++..+|. ...+..+.+-+ |....|+.++..++++.
T Consensus 309 YG~TE~~~~~~~~~~~~~~~~~~--~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G--~~v~~GY~~~p~~t~~~ 384 (620)
T 4dg8_A 309 YGPTENTTFTCCHVVTDDDLEED--DIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFG--AGLAQGYRNDAARTRAS 384 (620)
T ss_dssp ECCGGGCSCSEEEECCTGGGGSS--SCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEE--TTCCSEETTCHHHHHHH
T ss_pred EchhhhhhheEEEeccccccCCC--CCCceecccCcEEEEECccCCCCCCCCCceEEEEec--cccccccCCChhhhhhh
Confidence 99999854322 111000000 0001111111 11112222222 33346777777776553
Q ss_pred C----------CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 581 F----------DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 581 ~----------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
| .||+||| +|++|+| |+|+|+||+|||||++|+||
T Consensus 385 f~~~p~~~~~~~~yrTGD-l~~~~~d-G~l~~~GR~dd~Ik~~G~ri 429 (620)
T 4dg8_A 385 FVELPYRGRLLRAYRTGD-RARYDEQ-GRLRFIGRGDGQVKLNGYRL 429 (620)
T ss_dssp EEEEEETTEEEEEEEEEE-EEEECTT-SCEEEEECSSSEEEETTEEE
T ss_pred hccCCCCCCCceEEeCCC-EEEECCC-CeEEEEccCCCEEEECCEEc
Confidence 3 2488999 9999998 99999999999999999986
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=9.1e-57 Score=494.62 Aligned_cols=395 Identities=15% Similarity=0.186 Sum_probs=304.5
Q ss_pred hccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCC
Q psy8155 204 AQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV 283 (617)
Q Consensus 204 ~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~ 283 (617)
...+.|+.++|+++++++|+++|++++++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|+
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Ga 105 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGV 105 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCChHHHHHHHHhcCceEEEEccchH-----HHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhcc
Q psy8155 284 ITALINHNLRQNSLLHCINIAGVSAFIYGAELT-----DAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSE 358 (617)
Q Consensus 284 ~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (617)
+++|++|.++.+++.+++++++++++|++.... .....+.........++..+.... ...+.+....
T Consensus 106 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 177 (544)
T 3o83_A 106 VVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT--------DFGLLDWIET 177 (544)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT--------SEEHHHHHHS
T ss_pred EEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc--------ccchhhhhhc
Confidence 999999999999999999999999999987653 344444444444445555543211 1122222222
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHH-HHHHHh
Q psy8155 359 VPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM-CIGQAL 437 (617)
Q Consensus 359 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~-~~~~~L 437 (617)
.... ........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.+++.. +++.+|
T Consensus 178 ~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l 256 (544)
T 3o83_A 178 PAET-FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVL 256 (544)
T ss_dssp CCSS-CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHH
T ss_pred cccc-ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHH
Confidence 1111 11113457899999999999999999999999999999999999999999999999999999887643 688999
Q ss_pred HcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccc
Q psy8155 438 IFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQI 515 (617)
Q Consensus 438 ~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l 515 (617)
..|+++++.+.+++..+++.|+++++|++.++|+++..|++.......++++||.+. |+++++++.++|.+.++. ++
T Consensus 257 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~~ 335 (544)
T 3o83_A 257 HAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNC-KL 335 (544)
T ss_dssp HTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCS-EE
T ss_pred HcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCC-cE
Confidence 999999999999999999999999999999999999999987666666788999887 888999999999999976 79
Q ss_pred cccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHHHh--
Q psy8155 516 GEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLDLQ-- 577 (617)
Q Consensus 516 ~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~L~-- 577 (617)
+|.||+||+...+..... ........++..+++. ..+.++++ + |....|+.++...+
T Consensus 336 ~~~YG~TE~~~~~~~~~~--~~~~~~~~~G~p~~~~---~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 410 (544)
T 3o83_A 336 QQVFGMAEGLVNYTRLDD--SDEQIFTTQGRPISSD---DEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQ 410 (544)
T ss_dssp EEEEECTTSCEEECCTTS--CHHHHHHCCCEESCTT---CEEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHH
T ss_pred EeeeccccccceeecCCC--chhhccCCCceecCCC---cEEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhh
Confidence 999999998755542221 1111111122222111 12333332 1 33345666555444
Q ss_pred ---hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 578 ---KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 578 ---~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.+|| |+||| +|++|+| |+++|+||+||+||++|+||
T Consensus 411 ~f~~~g~--~~TGD-lg~~~~d-G~l~~~GR~dd~ik~~G~~v 449 (544)
T 3o83_A 411 VFDEDNY--YYSGD-LVQRTPD-GNLRVVGRIKDQINRGGEKI 449 (544)
T ss_dssp HBCTTCC--EEEEE-EEEECTT-SCEEEEEEEC----------
T ss_pred hCCCCCC--eEcCC-EEEEcCC-CCEEEEeecCCEEEeCCEEE
Confidence 5677 88999 9999998 99999999999999999997
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=7.8e-58 Score=499.96 Aligned_cols=395 Identities=22% Similarity=0.320 Sum_probs=306.7
Q ss_pred HHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCc--eecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHH
Q psy8155 197 LWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENT--EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCL 274 (617)
Q Consensus 197 ~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~--~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva 274 (617)
++..........|+.++|.++++++|+++|+++.++ ++||+||+++++++|++|+++|+++|++|+|+++|+++++++
T Consensus 5 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 5 HHHHVDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp -------CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred ccccCCCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 445556667789999999999999999999999877 999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcch
Q psy8155 275 WLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354 (617)
Q Consensus 275 ~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 354 (617)
+|||+++|+++||+||.+|.+++.+++++++++++|++....+.+..+.........++.+.. ...+.+
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 153 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG-----------ADSLAE 153 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE-----------HHHHHH
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC-----------cccHHH
Confidence 999999999999999999999999999999999999999888877776554332211111110 111223
Q ss_pred hhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHH
Q psy8155 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 434 (617)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 434 (617)
.........+ .....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++ ..++
T Consensus 154 ~~~~~~~~~~--~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~ 230 (517)
T 3r44_A 154 RLRSAAADEP--AVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL-TTVI 230 (517)
T ss_dssp HHHHCCCCCC--CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHH-HHHH
T ss_pred HhhccCcCCC--CCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHH-HHHH
Confidence 3322222221 234578999999999999999999999999999999999999999999999999999999996 4444
Q ss_pred HHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCc
Q psy8155 435 QALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 435 ~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~ 512 (617)
.+++.|+++++.+.+++..+++.|+++++|++.++|+++..|.+.+.....++++||.++ ||++++++.++|.+. +.
T Consensus 231 ~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~ 309 (517)
T 3r44_A 231 FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK-NI 309 (517)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TC
T ss_pred HHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc-CC
Confidence 556699999999999999999999999999999999999999987655556788999887 888999999999887 54
Q ss_pred ccccccccccccceEEe--CCCC-CCCHHHHHHHHhhcCCCCC----------c---CcEEEEeecccCCccchhhhHHH
Q psy8155 513 AQIGEFYGATEGMAAIL--DINK-SLDVSAVSEGIKKALPSYA----------R---PLFIRCLREVEMTGTYKLKKLDL 576 (617)
Q Consensus 513 ~~l~n~YG~TE~~~~v~--~~~~-~~~~~~l~~~l~~~Lp~~~----------~---P~~~~~~~~lP~t~~GK~dr~~L 576 (617)
+++|.||+||++.... .... ..... .+...+|... + +..+.+.+ |....|+.++..+
T Consensus 310 -~~~~~YG~TE~~~~~~~~~~~~~~~~~~----~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g--~~v~~GY~~~p~~ 382 (517)
T 3r44_A 310 -EVVQGYALTESCGGGTLLLSEDALRKAG----SAGRATMFTDVAVRGDDGVIREHGEGEVVIKS--DILLKEYWNRPEA 382 (517)
T ss_dssp -EEEEEEECGGGTTCEEEECGGGTTTTTT----CCBEECTTEEEEEECTTSCEESSEEEEEEEEE--TTSCSEETTCHHH
T ss_pred -cEEEeecccccccceeecCCccccccCC----CCCcCCCCeEEEEECCCCCCCCCCCeEEEEeC--cchhhhhCCChhh
Confidence 8999999999954332 1111 00000 0111111100 0 11122211 4445677777766
Q ss_pred hh----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 577 QK----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 577 ~~----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++ +|| |+||| +|++|+| |+++|+||+|||||++|+||
T Consensus 383 t~~~f~~g~--~~TGD-l~~~~~d-G~l~~~GR~dd~ik~~G~~v 423 (517)
T 3r44_A 383 TRDAFDNGW--FRTGD-IGEIDDE-GYLYIKDRLKDMIISGGENV 423 (517)
T ss_dssp HHHTEETTE--EEEEE-EEEECTT-SCEEEEECGGGCEEETTEEE
T ss_pred hHhhhcCCC--Eecce-eEEEcCC-eeEEEecCCcCEEEECCEEE
Confidence 65 455 88999 9999998 99999999999999999986
No 7
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.4e-56 Score=492.11 Aligned_cols=396 Identities=16% Similarity=0.154 Sum_probs=298.6
Q ss_pred cCCCHHHHHHHHHhhCCCceEEE---E--CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHh
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFM---F--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK 280 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~---~--~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~ 280 (617)
...|+.++|.++++++|+++|++ + .++++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 97 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 97 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHH
Confidence 45799999999999999999976 4 368999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCC
Q psy8155 281 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVP 360 (617)
Q Consensus 281 aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (617)
+|+++||+||.++.+++.+++++++++++|++.+..+.+.......+....++.++.... ......+.++.....
T Consensus 98 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 98 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD-----YQGFQSMYTFVTSHL 172 (550)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSC-----BTTBCBHHHHHHHHC
T ss_pred cCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCcc-----ccCcccHHHHhhccc
Confidence 999999999999999999999999999999999988888888777776667777654321 111333444333211
Q ss_pred CC-----CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH---hCCCCCCEEEEcCcchhhHHHHHH
Q psy8155 361 TS-----PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ---IGFRTKDRFYTPLPLYHTAGGAMC 432 (617)
Q Consensus 361 ~~-----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~ 432 (617)
.. .........++++|||+|||||||.||||+++|+++.+.+.+.... +++.+++++++.+|++|+.++ +.
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~ 251 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM-FT 251 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHH-HH
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHH-HH
Confidence 10 0111112245789999999999999999999999999888776655 568899999999999999996 67
Q ss_pred HHHHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHc
Q psy8155 433 IGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRF 510 (617)
Q Consensus 433 ~~~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~ 510 (617)
++.+|+.|+++++.+++++..+++.|+++++|++.++|+++..|++.......++++||.++ ||++++++.++|.+.+
T Consensus 252 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 252 TLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred HHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 88899999999999999999999999999999999999999999988776667789999887 8889999999999999
Q ss_pred CcccccccccccccceEEe-CCCCCCCHHHHHHHHhhcCCCC---------------CcCcEEEEeecccCCccchhhhH
Q psy8155 511 RIAQIGEFYGATEGMAAIL-DINKSLDVSAVSEGIKKALPSY---------------ARPLFIRCLREVEMTGTYKLKKL 574 (617)
Q Consensus 511 ~~~~l~n~YG~TE~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~---------------~~P~~~~~~~~lP~t~~GK~dr~ 574 (617)
+...++|.||+||+...+. .+....... .+...+|.. ..+..+.+-+ |....|+.++.
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~~~~~~~~----~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g--~~v~~GY~~~~ 405 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITPEGDDKPG----AVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRG--PMIMSGYVNNP 405 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECCTTCCCTT----EEEEECTTCEEEEECTTTCCBCCTTCCEEEEEES--TTSCSEETTCH
T ss_pred CCCccccccCcCccccceecCCCCCCCCC----CcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeC--CCcchhhcCCh
Confidence 8766999999999976554 221111110 112222221 1111222221 33345666554
Q ss_pred HHh-----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 575 DLQ-----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 575 ~L~-----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..+ .+|| |+||| +|++|+| |+++|+||+||+||++|+||
T Consensus 406 ~~t~~~~~~~g~--~~TGD-l~~~~~d-G~l~~~GR~dd~ik~~G~~v 449 (550)
T 3rix_A 406 EATNALIDKDGW--LHSGD-IAYWDED-EHFFIVDRLKSLIKYKGYQV 449 (550)
T ss_dssp HHHHHHBCTTSC--EEEEE-EEEECTT-CCEEEC--------------
T ss_pred hhhhhhcCCCCC--eecCc-EEEEeCC-ceEEEEecchheeEECCEEE
Confidence 443 5677 78999 9999998 99999999999999999997
No 8
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=7.2e-57 Score=496.15 Aligned_cols=391 Identities=15% Similarity=0.188 Sum_probs=302.9
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEECC--------ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHH
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFEN--------TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 276 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~~--------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~l 276 (617)
.+..|+.++|+++++++|+++|+++.+ +++||+||+++++++|++|++.|+++|++|+|+++|++++++++|
T Consensus 16 ~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 95 (549)
T 3g7s_A 16 YPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIY 95 (549)
T ss_dssp CCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 356799999999999999999999987 899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhh
Q psy8155 277 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLL 356 (617)
Q Consensus 277 A~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 356 (617)
||+++|+++||+||.+|.+++.+++++++++++|++....+.+.......+ ...++..+.. ...+.++.
T Consensus 96 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~ 164 (549)
T 3g7s_A 96 ALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE----------VNSLSEVM 164 (549)
T ss_dssp HHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS----------SSCHHHHH
T ss_pred HHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC----------CcCHHHHH
Confidence 999999999999999999999999999999999999998888777766554 2344544421 33455554
Q ss_pred ccCCCCCCCCCCCCCC-CCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHH
Q psy8155 357 SEVPTSPPSLSYRVGV-QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435 (617)
Q Consensus 357 ~~~~~~~~~~~~~~~~-~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 435 (617)
......... ....+ +++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.++.. ++.
T Consensus 165 ~~~~~~~~~--~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~ 241 (549)
T 3g7s_A 165 DSGSEDFEN--VKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL-VNL 241 (549)
T ss_dssp HHSCSCCCC--CCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-HTT
T ss_pred hcCcccccc--ccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-HHH
Confidence 443322111 12334 89999999999999999999999999999999999999999999999999999998644 788
Q ss_pred HhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCC--CccCceeeee--ccCCCHHHHHHHHHH--
Q psy8155 436 ALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE--DKAHNVRLMF--GNGLRPQIWSEFVDR-- 509 (617)
Q Consensus 436 ~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--~~l~~lr~v~--Ge~l~~~~~~~~~~~-- 509 (617)
++..|+++++.+.+++..+++.|+++++|++.++|+++..|++...... .+++++|.+. |+++++++.++|.+.
T Consensus 242 ~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~ 321 (549)
T 3g7s_A 242 MVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAA 321 (549)
T ss_dssp HHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHH
T ss_pred HHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987643322 4678999887 888999999999988
Q ss_pred --cCc--ccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEee-------------c----ccCCcc
Q psy8155 510 --FRI--AQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLR-------------E----VEMTGT 568 (617)
Q Consensus 510 --~~~--~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~-------------~----lP~t~~ 568 (617)
++. .+++|.||+||+...+....... .. -...+...+|.. .+.+++ + =|....
T Consensus 322 ~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~-~~~~~G~p~~~~----~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~ 395 (549)
T 3g7s_A 322 EKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LD-KSTTQGVPMSDI----ELKVISLEDGRELGVGESGEIVIRGPNIFK 395 (549)
T ss_dssp HHSSCTTCEEEEEEECGGGSSEEEECCGGG-GG-GTTSCCEECTTC----EEEEECSSSCCEECTTCCEEEEEESTTSCS
T ss_pred hhcCCccccccceEeccccchhhhcCCccc-cC-cCCCccccCCCC----EEEEEeCCCCcCCCCCCceEEEEECcchhh
Confidence 552 48999999999976555211100 00 000011112211 233332 1 134446
Q ss_pred chhhhHHHhhcCCC-------CCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 569 YKLKKLDLQKEGFD-------PNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 569 GK~dr~~L~~~g~~-------~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|+.++...+++.|. ||+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 396 GY~~~~~~t~~~f~~~~~g~~~~~TGD-l~~~~~d-G~l~~~GR~dd~ik~~G~~v 449 (549)
T 3g7s_A 396 GYWKREKENQECWWYDEKGRKFFRTGD-VGFIDEE-GFLHFQDRVKEVIKYKGYTI 449 (549)
T ss_dssp EETTCTTGGGTSEEECTTCCEEEEEEE-EEEECTT-SCEEEEEEC-----------
T ss_pred hhCCChhhhhhhhhccCCCCceEccCc-EEEEcCC-ceEEEeccccceEEECCEEE
Confidence 67766666544331 488999 9999998 99999999999999999997
No 9
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.1e-55 Score=482.54 Aligned_cols=383 Identities=19% Similarity=0.227 Sum_probs=295.1
Q ss_pred cCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
.+.|+.++|+++|+++|+++|+++.++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 83 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL 83 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEE
T ss_pred CcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCC
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPS 365 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (617)
||+||.+|.+++.+++++++++++|++.+..+.+......++....++.+++.. ..+.++...... .+.
T Consensus 84 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~-~~~ 152 (509)
T 3ivr_A 84 LPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS----------GPFAPFKDLASD-TPF 152 (509)
T ss_dssp EECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC----------SSCEEGGGTCCC-SCC
T ss_pred EecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCC----------cChhhHhhccCC-CCC
Confidence 999999999999999999999999999998877666555665556666665421 123333221111 112
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEE
Q psy8155 366 LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445 (617)
Q Consensus 366 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi 445 (617)
..+...+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++ ..++.+++.|++.++
T Consensus 153 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~~~~~g~~~~ 231 (509)
T 3ivr_A 153 SAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL-GLMLTLQQAGGASVI 231 (509)
T ss_dssp CCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEE
T ss_pred CcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHH-HHHHHHHHhCCcEEE
Confidence 2235678999999999999999999999999999999999999999999999999999999996 555566666777777
Q ss_pred cCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccc
Q psy8155 446 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523 (617)
Q Consensus 446 ~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 523 (617)
...+++..+++.|+++++|++..+|+++..|++.. ....++++|.+. |++ +..++|.+.++..+++|.||+||
T Consensus 232 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE 306 (509)
T 3ivr_A 232 AAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSE 306 (509)
T ss_dssp CSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGG
T ss_pred ecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccc
Confidence 66899999999999999999999999999999876 345678999887 443 88999999996678999999999
Q ss_pred cceEEe--CCCCCCCHHHHHHHHhhcCCCC--------------CcCcEEEEeecccCCccchhhhHHHhh----cCCCC
Q psy8155 524 GMAAIL--DINKSLDVSAVSEGIKKALPSY--------------ARPLFIRCLREVEMTGTYKLKKLDLQK----EGFDP 583 (617)
Q Consensus 524 ~~~~v~--~~~~~~~~~~l~~~l~~~Lp~~--------------~~P~~~~~~~~lP~t~~GK~dr~~L~~----~g~~~ 583 (617)
+..... ....... .+...+|.. ..+..+.+.+ |....|+.++..+++ +||
T Consensus 307 ~~~~~~~~~~~~~~~------~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g--~~~~~gY~~~~~~t~~~f~~g~-- 376 (509)
T 3ivr_A 307 TSGLSTFAPYRDRPK------SAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRG--PTVFKGYWNNAAATQHAFRNGW-- 376 (509)
T ss_dssp GTEEEEEEEGGGSTT------SCCEECTTCEEEEECTTSCBCCTTCCEEEEEES--TTSCCEETTCHHHHHHHTGGGS--
T ss_pred cccccccCccccCCC------cccccCCCcEEEEECCCCCCCCCCCceEEEEec--CCccccccCCHHHhHHHhhcCC--
Confidence 965443 1111000 022222221 0111222221 344456666555543 567
Q ss_pred CccCCeeEEEeCCCceeeCCHHH--HHHHhcCCcCC
Q psy8155 584 NVIQDRLYYLSSKGVYEELTPEV--YKDLVQGNIRL 617 (617)
Q Consensus 584 ~~TGD~lg~~d~d~G~l~i~GR~--~d~I~~~G~~v 617 (617)
|+||| +|++|+| |+++|+||. ||+||++|+||
T Consensus 377 ~~TGD-l~~~~~d-G~l~~~GR~d~~d~ik~~G~~v 410 (509)
T 3ivr_A 377 HHTGD-MGRFDAD-GYLFYAGRAPEKELIKTGGENV 410 (509)
T ss_dssp EEEEE-EEEECTT-SCEEEEEEC-------------
T ss_pred ccccc-EEEECCC-ceEEEeCCCCcceeEEECCEEE
Confidence 88999 9999998 999999999 99999999997
No 10
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=6.9e-56 Score=483.37 Aligned_cols=382 Identities=20% Similarity=0.229 Sum_probs=296.1
Q ss_pred CCHHHHHHHHHhhCCCceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeE
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVIT 285 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~ 285 (617)
.|+.++|+++++++|+++|+++. ++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 47999999999999999999998 8899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChHHHHHHHHhcCceEEEE--ccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccC---C
Q psy8155 286 ALINHNLRQNSLLHCINIAGVSAFIY--GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV---P 360 (617)
Q Consensus 286 vpldp~~p~~~l~~il~~~~~~~vl~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 360 (617)
||+||.++.+++.+++++++++++|+ +.+..+.+. ...+ ..+++.+++ +.... .
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~-~~~~~~~~~-----------------~~~~~~~~~ 140 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF---QSGS-GARIIFLGD-----------------LVRDGEPYS 140 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHH---HHCC-CCEEEEGGG-----------------TEETTEECC
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhh---hccc-cceeEEecc-----------------hhhcCcccc
Confidence 99999999999999999999999999 766554431 1111 233333221 11110 0
Q ss_pred CCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCC--CCCCEEEEcCcchhhHHHHHHHHHHhH
Q psy8155 361 TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGF--RTKDRFYTPLPLYHTAGGAMCIGQALI 438 (617)
Q Consensus 361 ~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~~~~~~~~~~L~ 438 (617)
...+.......++++|||+|||||||+||||+++|+++.+.+.+....+++ +++|++++.+|++|+.++...++.+|.
T Consensus 141 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~ 220 (504)
T 1t5h_X 141 YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220 (504)
T ss_dssp CSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHH
T ss_pred cCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHH
Confidence 001111134578999999999999999999999999999999888888888 889999999999999997677889999
Q ss_pred cCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC--CCCCccCceeeee--ccCCCHHHHHHHHHHcCccc
Q psy8155 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE--KPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQ 514 (617)
Q Consensus 439 ~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~ 514 (617)
.|+++++.+.+++..+++.|+++++|++.++|++++.|++... ....++++||.++ ||++++++.++|.+.++. +
T Consensus 221 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~-~ 299 (504)
T 1t5h_X 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-E 299 (504)
T ss_dssp TTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCS-E
T ss_pred cCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCc-c
Confidence 9999999999999999999999999999999999999987642 2344678999887 889999999999999986 7
Q ss_pred ccccccccccceEEeCC-CCCCCHH------H--HHHHHh---hcCCCCCcCcEEEEeecccCCccchhhhHHHhh----
Q psy8155 515 IGEFYGATEGMAAILDI-NKSLDVS------A--VSEGIK---KALPSYARPLFIRCLREVEMTGTYKLKKLDLQK---- 578 (617)
Q Consensus 515 l~n~YG~TE~~~~v~~~-~~~~~~~------~--l~~~l~---~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~---- 578 (617)
++|.||+||+...+... ....... + +.+... +.+|. ..+..+.+. .-|....|+.++...++
T Consensus 300 ~~~~YG~TE~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~-g~~GEl~v~-gg~~~~~GY~~~~~~t~~~f~ 377 (504)
T 1t5h_X 300 KVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVAN-GEEGELIVA-ASDSAFVGYLNQPQATAEKLQ 377 (504)
T ss_dssp EEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCT-TCCEEEEEE-CCTTSCCCBTTCHHHHHHHEE
T ss_pred eeeeeccccccccccccCCCCCccccCCCCCceeEEeccCCCCCcCCC-CCcceEEEe-CCceeeceecCCchhhhhhhc
Confidence 99999999994333211 0000000 0 000000 11221 112223322 12333457776655543
Q ss_pred cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 ~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|| |+||| +|++|+| |+++|+||+||+||++|+||
T Consensus 378 ~g~--~~TGD-lg~~~~d-G~l~~~GR~dd~ik~~G~~v 412 (504)
T 1t5h_X 378 DGW--YRTSD-VAVWTPE-GTVRILGRVDDMIISGGENI 412 (504)
T ss_dssp TTE--EEEEE-EEEECTT-SCEEEEEEGGGCEEETTEEE
T ss_pred CCc--cccCc-EEEECCC-ceEEEeCcccCEEEECCEEE
Confidence 577 88999 9999998 99999999999999999986
No 11
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=4.5e-56 Score=496.30 Aligned_cols=391 Identities=16% Similarity=0.202 Sum_probs=309.8
Q ss_pred hhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 203 VAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 203 ~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
....+.|++++|+++++ ||++|++++++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+|+|
T Consensus 22 ~~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG 99 (617)
T 3rg2_A 22 GYWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG 99 (617)
T ss_dssp TSCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence 34567899999999988 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchH-----HHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhc
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELT-----DAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLS 357 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 357 (617)
++|||+||.+|.+++.++++++++++++++.... ..........+....+...+... ...+.+...
T Consensus 100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 170 (617)
T 3rg2_A 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSG---------EHNLQDAIN 170 (617)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCS---------TTBHHHHHH
T ss_pred eEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccccc---------ccchhhhhc
Confidence 9999999999999999999999999999987653 33344444444433444443321 112223322
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHH-HHHHHH
Q psy8155 358 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA-MCIGQA 436 (617)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~~ 436 (617)
...... ......++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.+++. ++++.+
T Consensus 171 ~~~~~~--~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~ 248 (617)
T 3rg2_A 171 HPAEDF--TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGV 248 (617)
T ss_dssp SCCSSC--CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHH
T ss_pred cccccc--CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHH
Confidence 221111 12344678999999999999999999999999999999999999999999999999999887753 368999
Q ss_pred hHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCC--CCCccCceeeee--ccCCCHHHHHHHHHHcCc
Q psy8155 437 LIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK--PEDKAHNVRLMF--GNGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 437 L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~--~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~ 512 (617)
|+.|+++++.+..++..+++.|+++++|++.++|+++..+++.... ....+++||.++ ||++++++.++|.+.++.
T Consensus 249 l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~ 328 (617)
T 3rg2_A 249 FLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGC 328 (617)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCS
T ss_pred HHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999998765322 223678999886 899999999999999876
Q ss_pred ccccccccccccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCc-EEEEeec------------c----cCCccchhhhHH
Q psy8155 513 AQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPL-FIRCLRE------------V----EMTGTYKLKKLD 575 (617)
Q Consensus 513 ~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~-~~~~~~~------------l----P~t~~GK~dr~~ 575 (617)
+++|.||+||+...+..... ........+...++ |. .+.++++ + |....|+.++..
T Consensus 329 -~~~~~YG~tE~~~~~~~~~~--~~~~~~~~~G~p~~----~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~ 401 (617)
T 3rg2_A 329 -QLQQVFGMAEGLVNYTRLDD--SAEKIIHTQGYPMC----PDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQ 401 (617)
T ss_dssp -EEEEEEEETTEEEEECCTTS--CHHHHHHCCCEESC----TTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHH
T ss_pred -cEEEEeccCcceeecccCCC--cccccccCCCccCC----CCceEEEECCCCCCCCCCCceEEEecCccccchhcCChh
Confidence 79999999998765543221 11111111111111 11 2333322 1 334567777766
Q ss_pred Hhh-----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 576 LQK-----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 576 L~~-----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+++ ++| |+||| +|++|+| |+|+|+||+|||||++|+||
T Consensus 402 ~t~~~f~~~~~--yrTGD-l~~~~~d-G~l~~~GR~dd~iki~G~ri 444 (617)
T 3rg2_A 402 HNASAFDANGF--YCSGD-LISIDPE-GYITVQGREKDQINRGGEKI 444 (617)
T ss_dssp HHHHHBCTTSC--EEEEE-EEEECTT-SCEEEEEECSSEEEETTEEE
T ss_pred hhhhccCCCCc--eecCc-eEEEcCC-ceEEEEeecCCEEEECCEEe
Confidence 654 566 88999 9999998 99999999999999999986
No 12
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.1e-56 Score=490.03 Aligned_cols=389 Identities=19% Similarity=0.198 Sum_probs=307.4
Q ss_pred CCCHHHHHHHHHhhCCCceEEEE----CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMF----ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~----~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
+.++.++|+++++++|+++|+++ .++++||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 46899999999999999999994 56789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (617)
+++||+||.++.+++.+++++++++++|++.+..+.+..+...++....++.+++... .....+.++.......
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 170 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP------EGYLAYEEALGEEADP 170 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC------TTCEEHHHHCCSCCCC
T ss_pred cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC------cccccHHHHhhccCCc
Confidence 9999999999999999999999999999999888877776665554445666554221 0122344433322111
Q ss_pred CCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHH--HHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcC
Q psy8155 363 PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGA--IAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440 (617)
Q Consensus 363 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G 440 (617)
....+++++||+|||||||.||||+++|+++.+...+ ....++++++|++++.+|++|+.++ ..++.+++.|
T Consensus 171 -----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G 244 (541)
T 1v25_A 171 -----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW-CLPYAATLVG 244 (541)
T ss_dssp -----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHH-THHHHHHHHT
T ss_pred -----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHH-HHHHHHHhcC
Confidence 2346789999999999999999999999999877665 2345678999999999999999886 5678899999
Q ss_pred cEEEEcCC-CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccc
Q psy8155 441 CCVVIRKK-FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGE 517 (617)
Q Consensus 441 ~~lvi~~~-~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n 517 (617)
+++++.+. +++..+++.|+++++|++.++|+++..|++.......++++||.++ ||++++++.++| +.++. +++|
T Consensus 245 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~-~~~~ 322 (541)
T 1v25_A 245 AKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMGV-EVRQ 322 (541)
T ss_dssp CEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTTC-EEEE
T ss_pred ceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhCC-ceee
Confidence 99999874 7999999999999999999999999999876443344678999776 888999999999 67765 7999
Q ss_pred cccccccceEEeCC-CC----CCCHHHH---HHHHhhcCCCCCcCcEEEEeec----c--------------cCCccchh
Q psy8155 518 FYGATEGMAAILDI-NK----SLDVSAV---SEGIKKALPSYARPLFIRCLRE----V--------------EMTGTYKL 571 (617)
Q Consensus 518 ~YG~TE~~~~v~~~-~~----~~~~~~l---~~~l~~~Lp~~~~P~~~~~~~~----l--------------P~t~~GK~ 571 (617)
.||+||+...+... .. ....... ...++..+|.. .+.++++ + |....|+.
T Consensus 323 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~----~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~ 398 (541)
T 1v25_A 323 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV----RLRVADEEGRPVPKDGKALGEVQLKGPWITGGYY 398 (541)
T ss_dssp EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC----EEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCB
T ss_pred cccccccccceecccccccccccCccccccccCCCCCcCCCc----EEEEECCCCCCCCCCCCcceEEEEeCcchhcccc
Confidence 99999997555421 11 1111111 11122223221 2333332 1 22335666
Q ss_pred hhHHHhh-----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 572 KKLDLQK-----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 572 dr~~L~~-----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++...++ +|| |+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 399 ~~p~~t~~~f~~~g~--~~TGD-lg~~d~d-G~l~~~GR~~d~ik~~G~~v 445 (541)
T 1v25_A 399 GNEEATRSALTPDGF--FRTGD-IAVWDEE-GYVEIKDRLKDLIKSGGEWI 445 (541)
T ss_dssp TCHHHHHTTBCTTSC--EEEEE-EEEECTT-CCEEEEEESSCEEEETTEEE
T ss_pred CChhhhhhhccCCCC--eEcCC-EEEEcCC-ceEEEeecccceeeeCCEEE
Confidence 6655554 676 88999 9999998 99999999999999999986
No 13
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=2.1e-55 Score=479.05 Aligned_cols=379 Identities=20% Similarity=0.250 Sum_probs=301.8
Q ss_pred HHHHHHHhhCCCceEEE---ECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEec
Q psy8155 212 DIFREHAVRSPNKVIFM---FENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288 (617)
Q Consensus 212 ~~~~~~a~~~p~~~Al~---~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpl 288 (617)
++|+++++++|+++|+. +.++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 57899999999999988 467899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCC
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSY 368 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (617)
||.+|.+++.+++++++++++|++.+..+.+..+...... .+..++... ...+.+........ ....
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~~~~--~~~~ 150 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDG---------RGSLTDAAAGASEA--FATI 150 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTS---------CSHHHHHHHTSCSC--CCCC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCc---------ccccchhhhcCCCC--cCcC
Confidence 9999999999999999999999998876655555444432 344443221 11111111111111 1122
Q ss_pred CCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC
Q psy8155 369 RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK 448 (617)
Q Consensus 369 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~ 448 (617)
...++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|..++...++.+++.|+++++.++
T Consensus 151 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~ 230 (503)
T 4fuq_A 151 DRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPK 230 (503)
T ss_dssp CCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSS
T ss_pred CCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCC
Confidence 45789999999999999999999999999999999999999999999999999999998876667789999999999999
Q ss_pred CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccce
Q psy8155 449 FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMA 526 (617)
Q Consensus 449 ~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 526 (617)
+++..+++.++ ++|++.++|+++..|++........++++|.++ |+++++++.++|.+.++. +++|.||+||+..
T Consensus 231 ~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~-~~~~~YG~TE~~~ 307 (503)
T 4fuq_A 231 FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGH-AVLERYGMTETNM 307 (503)
T ss_dssp CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSC-CEEECCEETTTEE
T ss_pred CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCC-CccceEcccccCc
Confidence 99999999998 899999999999999998877777788999887 788999999999999986 7999999999965
Q ss_pred EEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEee-c----c------------cCCccchhhhHHHh-----hcCCCCC
Q psy8155 527 AILDINKSLDVSAVSEGIKKALPSYARPLFIRCLR-E----V------------EMTGTYKLKKLDLQ-----KEGFDPN 584 (617)
Q Consensus 527 ~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~-~----l------------P~t~~GK~dr~~L~-----~~g~~~~ 584 (617)
....+...... ...++..+|.. .+.+++ + + |....|+.++...+ ++|| |
T Consensus 308 ~~~~~~~~~~~---~~~~G~p~~~~----~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~--~ 378 (503)
T 4fuq_A 308 NTSNPYDGDRV---PGAVGPALPGV----SARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGF--F 378 (503)
T ss_dssp CBCCCSSSCCC---TTEEEEBCTTC----EEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSC--E
T ss_pred ccccCCCCCCc---CCccccCCCCe----EEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCC--e
Confidence 54422111000 00111222211 233332 1 1 33445666665554 4666 8
Q ss_pred ccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 585 VIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 585 ~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+||| +|++|+| |+++|+||+|||||++|+||
T Consensus 379 ~TGD-l~~~~~d-G~l~~~GR~dd~ik~~G~~v 409 (503)
T 4fuq_A 379 ITGD-LGKIDER-GYVHILGRGKDLVITGGFNV 409 (503)
T ss_dssp EEEE-EEEECTT-CEEEECCSSTTCEEETTEEE
T ss_pred Ecce-eEEEcCC-CcEEEEecCCCEEEECCEEE
Confidence 8999 9999998 99999999999999999986
No 14
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=7.8e-56 Score=488.52 Aligned_cols=403 Identities=18% Similarity=0.174 Sum_probs=302.1
Q ss_pred ecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCC
Q psy8155 175 KDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQG 254 (617)
Q Consensus 175 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~g 254 (617)
....+.++..+++.|+++++..++......+...++.++|+++++++|+++|+++.++++||+||+++++++|++|++.|
T Consensus 6 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~G 85 (563)
T 1amu_A 6 KSILIHAQNKNGTHEEEQYLFAVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKG 85 (563)
T ss_dssp -----------CCCHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCccccccccCCHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcC
Confidence 45567778888888888877776665555566789999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEE
Q psy8155 255 LKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFS 334 (617)
Q Consensus 255 v~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~ 334 (617)
+++|++|+|+++|++++++++|||+++|+++||+||.++.+++.+++++++++++|++.+....+.. ......+..
T Consensus 86 v~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~~~~~~~~ 161 (563)
T 1amu_A 86 IGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQFNGQVEI 161 (563)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SCCCSEEEE
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----ccccCceee
Confidence 9999999999999999999999999999999999999999999999999999999999876654332 222223333
Q ss_pred eCCCCCCCCCCCCCcCCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCC
Q psy8155 335 WSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTK 414 (617)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 414 (617)
++... +. . ... ........++++|||+|||||||.||||+++|+++.+.+.+....++++++
T Consensus 162 ~~~~~------------~~---~-~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 223 (563)
T 1amu_A 162 FEEDT------------IK---I-REG--TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEK 223 (563)
T ss_dssp CCCST------------TT---T-SCC--SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTT
T ss_pred ecchh------------hc---c-ccC--ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCC
Confidence 33210 00 0 000 011123467899999999999999999999999999999888888999999
Q ss_pred CEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCC---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCcee
Q psy8155 415 DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVR 491 (617)
Q Consensus 415 d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr 491 (617)
|++++.+|++|+.++ +.++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|... .++++|
T Consensus 224 d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr 296 (563)
T 1amu_A 224 DRIGQFASISFDASV-WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQ 296 (563)
T ss_dssp CEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCS
T ss_pred CEEEEeCCccHHHHH-HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------cccccc
Confidence 999999999999885 788899999999999875 7999999999999999999999999877532 357888
Q ss_pred eee--ccCCCHHHHHHHHHHcCcccccccccccccceEEe--CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----
Q psy8155 492 LMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL--DINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----- 562 (617)
Q Consensus 492 ~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~--~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----- 562 (617)
.++ |+++++++.++|.+. .+++|.||+||+...+. .......... ..++..+|. ..+.++++
T Consensus 297 ~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~--~~vG~p~~~----~~v~i~d~~~~~~ 367 (563)
T 1amu_A 297 TLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHS--VPIGAPIQN----TQIYIVDENLQLK 367 (563)
T ss_dssp EEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSS--CCCBEECTT----EEEEEECTTSCBC
T ss_pred EEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCC--CcccceeCC----CEEEEECCCcCCC
Confidence 776 888999999999875 37999999999854322 1111000000 001111221 12333321
Q ss_pred -------c----cCCccchhhhHHHhhcCC---------CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 563 -------V----EMTGTYKLKKLDLQKEGF---------DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 563 -------l----P~t~~GK~dr~~L~~~g~---------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+ |....|+.++...+++.| .||+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 368 ~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGD-lg~~d~d-G~l~i~GR~~d~Ik~~G~~V 440 (563)
T 1amu_A 368 SVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGD-QARWLSD-GNIEYLGRIDNQVKIRGHRV 440 (563)
T ss_dssp CTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEE-EEEECTT-SCEEEEEEGGGEEEETTEEE
T ss_pred CCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCC-EEEEcCC-CeEEEeccccCEEEECCEEe
Confidence 1 333456666655443322 1388999 9999998 99999999999999999986
No 15
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4e-55 Score=484.26 Aligned_cols=397 Identities=21% Similarity=0.250 Sum_probs=309.9
Q ss_pred ccCCCHH-HHHHHHHhhCCCceEEEEC-----CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHH
Q psy8155 205 QKDLTIA-DIFREHAVRSPNKVIFMFE-----NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGL 278 (617)
Q Consensus 205 ~~~~tl~-~~~~~~a~~~p~~~Al~~~-----~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~ 278 (617)
+...++. ++|+++|+++|+++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~ 131 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGL 131 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 3345555 9999999999999999972 468999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchH--HHHHHHHHhcCCC-eEEEEeCCCCCCCCCCCCCcCCcchh
Q psy8155 279 SKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELT--DAVQEISTSLGSN-VKLFSWSPDTDSSSSPVPRSQALSPL 355 (617)
Q Consensus 279 ~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~--~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 355 (617)
+|+|+++||++|.++.+++.+++++++++++|++.+.. +.+......++.. ..++.++... ..+...+.+.
T Consensus 132 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 205 (580)
T 3etc_A 132 HKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV------LEGWIDFRKE 205 (580)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC------CTTCEEHHHH
T ss_pred HhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc------ccccccHHHH
Confidence 99999999999999999999999999999999988754 6666666665544 4555555321 1123444444
Q ss_pred hccCCCCCC--CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHH
Q psy8155 356 LSEVPTSPP--SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 433 (617)
Q Consensus 356 ~~~~~~~~~--~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 433 (617)
+........ .......++|++||+|||||||.||||+++|+++...+......+++.+++++++.+|++|+.+....+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (580)
T 3etc_A 206 LEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKL 285 (580)
T ss_dssp HHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTT
T ss_pred HhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHH
Confidence 443332221 111245789999999999999999999999999988887777778899999999999999988865567
Q ss_pred HHHhHcCcEEEEc--CCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHH
Q psy8155 434 GQALIFGCCVVIR--KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDR 509 (617)
Q Consensus 434 ~~~L~~G~~lvi~--~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~ 509 (617)
+.++..|+++++. +.+++..+++.|+++++|++.++|++++.|++. .....++++||.++ ||++++++.++|.+.
T Consensus 286 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 364 (580)
T 3etc_A 286 YGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEF 364 (580)
T ss_dssp HHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHH
Confidence 8899999999998 568999999999999999999999999999986 33445688999887 899999999999999
Q ss_pred cCcccccccccccccceEEeC-CCCCCCHHHHHHHHhhcCCCCC--------------cCcEEEEee---cccCCccchh
Q psy8155 510 FRIAQIGEFYGATEGMAAILD-INKSLDVSAVSEGIKKALPSYA--------------RPLFIRCLR---EVEMTGTYKL 571 (617)
Q Consensus 510 ~~~~~l~n~YG~TE~~~~v~~-~~~~~~~~~l~~~l~~~Lp~~~--------------~P~~~~~~~---~lP~t~~GK~ 571 (617)
++. +++|.||+||+...+.. +....... .++..+|.+. .+..+.+-. .-|....|+.
T Consensus 365 ~g~-~i~~~YG~TE~~~~~~~~~~~~~~~~----~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~ 439 (580)
T 3etc_A 365 TGI-KLMEGFGQTETVVTIATFPWMEPKPG----SIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYG 439 (580)
T ss_dssp HSC-CCEEEECCTTSSCCEECCTTSCCCTT----CCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEET
T ss_pred hCC-eEecccccccccceeecCCCCCCCCC----ccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeecccc
Confidence 886 79999999999665552 11111110 1122222221 112222221 1133345666
Q ss_pred hhHHHhh----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 572 KKLDLQK----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 572 dr~~L~~----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++...++ +|| |+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 440 ~~p~~t~~~f~~gw--y~TGD-lg~~d~d-G~l~~~GR~dd~Ik~~G~~I 485 (580)
T 3etc_A 440 KDPERTEETWHDGY--YHTGD-MAWMDED-GYLWFVGRADDIIKTSGYKV 485 (580)
T ss_dssp TCHHHHHHHEETTE--EEEEE-EEEECTT-SCEEEEEESSSCEEETTEEE
T ss_pred CCHhHHHhhcCCCE--EecCc-EEEECCC-CcEEEEecCCCEEEECCEEE
Confidence 5555543 566 88999 9999998 99999999999999999986
No 16
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1e-55 Score=518.56 Aligned_cols=448 Identities=15% Similarity=0.158 Sum_probs=309.1
Q ss_pred hhhhhhhhhccchhhhcccEEEEeccccceeecccCCCcccccHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhCCC
Q psy8155 144 KKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPN 223 (617)
Q Consensus 144 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~a~~~p~ 223 (617)
.+|++++.+.++++++..++..++ ..+...+..........+. ......+...|++++|.++++++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~~~p~~~tl~~~l~~~a~~~pd 76 (979)
T 3tsy_A 9 HHSSGLVPRGSHMARMAPQEQAVS-QVMEKQSNNNNSDVIFRSK-----------LPDIYIPNHLSLHDYIFQNISEFAT 76 (979)
T ss_dssp -------------------------------------CCCBCCS-----------SCCCCCCTTSCHHHHHTTTGGGTTT
T ss_pred ccccCcccCcchhhhhhhHHHHHH-HhhhhcccCCCCCceeecC-----------CCCCCCCCCCCHHHHHHHHHHhCCC
Confidence 379999999999999998877654 2222222211111111110 0112334568999999999999999
Q ss_pred ceEEEEC--CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHH
Q psy8155 224 KVIFMFE--NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCI 301 (617)
Q Consensus 224 ~~Al~~~--~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il 301 (617)
++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||+||.+|.+++.+++
T Consensus 77 ~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l 156 (979)
T 3tsy_A 77 KPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQA 156 (979)
T ss_dssp SEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHH
T ss_pred CeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHH
Confidence 9999997 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC-CCCCCCCCCCCCeEEEEE
Q psy8155 302 NIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS-PPSLSYRVGVQDKLIYIY 380 (617)
Q Consensus 302 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~ii~ 380 (617)
++++++++|++.+..+.+..+.... ...++.+++.... ........+.++....... .........+++++||+|
T Consensus 157 ~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~ 232 (979)
T 3tsy_A 157 KASNTKLIITEARYVDKIKPLQNDD--GVVIVCIDDNESV--PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPY 232 (979)
T ss_dssp HHHTEEEEEECSTTTTTSHHHHHTS--CCEEEECCCCTTS--CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCB
T ss_pred HHcCCeEEEEChHHHHHHHHHhhcC--CceEEEeCCcccc--cCCcccccHHHHhhccccccccCCcCCCCccceEEEEe
Confidence 9999999999998777666654432 3456666543211 1111123333333322110 011223457899999999
Q ss_pred ccCCCCCCceEEechHHHHHHHHHHHH----HhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCHHHHHH
Q psy8155 381 TSGTTGLPKAAVISNHRYYFLGGAIAY----QIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFS 456 (617)
Q Consensus 381 TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~~l~~ 456 (617)
||||||+||||+++|+++.+.+.+... .+++.++|++++.+|++|+.++...++.+|..|+++++.+++++..+++
T Consensus 233 TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~ 312 (979)
T 3tsy_A 233 SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLE 312 (979)
T ss_dssp CCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHH
T ss_pred CCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHH
Confidence 999999999999999999988876654 4568899999999999999997677889999999999999999999999
Q ss_pred HHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccccceEEeC----
Q psy8155 457 DVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILD---- 530 (617)
Q Consensus 457 ~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~v~~---- 530 (617)
.|+++++|++.++|+++..|++.......++++||.++ |+++++++.++|.+.+|..+++|.||+||+...+..
T Consensus 313 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~ 392 (979)
T 3tsy_A 313 LIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGF 392 (979)
T ss_dssp HHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGG
T ss_pred HHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCC
Confidence 99999999999999999999988776666789999887 888999999999999977789999999999654431
Q ss_pred CCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----c------------cCCccchhhhHHHh-----hcCCCCCccCC
Q psy8155 531 INKSLDVSAVSEGIKKALPSYARPLFIRCLRE-----V------------EMTGTYKLKKLDLQ-----KEGFDPNVIQD 588 (617)
Q Consensus 531 ~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----l------------P~t~~GK~dr~~L~-----~~g~~~~~TGD 588 (617)
........ ...+...+|. ..+.+++. + |....|++++...+ .+|| |+|||
T Consensus 393 ~~~~~~~~--~~~~G~p~~~----~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~--~~TGD 464 (979)
T 3tsy_A 393 AKEPFPVK--SGACGTVVRN----AEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGW--LHTGD 464 (979)
T ss_dssp SSSCCCCC--TTCCCEECSS----CEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSC--EEEEE
T ss_pred CCCccccC--CCCcCcccCC----cEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCc--EEcCC
Confidence 11100000 0001111211 12333331 1 33345666554443 5677 88999
Q ss_pred eeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 589 RLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 589 ~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|++|+| |+|+|+||+||+||++|+||
T Consensus 465 -l~~~~~d-G~l~~~GR~dd~ik~~G~~v 491 (979)
T 3tsy_A 465 -IGLIDDD-DELFIVDRLKELIKYKGFQV 491 (979)
T ss_dssp -EEEECTT-SCEEEEEESCC---------
T ss_pred -EEEEcCC-ceEEEecCCCCEEEECCEEE
Confidence 9999998 99999999999999999997
No 17
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.1e-55 Score=493.43 Aligned_cols=400 Identities=19% Similarity=0.224 Sum_probs=307.6
Q ss_pred CCHHHHHHHHHhhCCCceEEEE------CCceecHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCCHHHHHHHHHHHh
Q psy8155 208 LTIADIFREHAVRSPNKVIFMF------ENTEWTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSK 280 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~------~~~~lTy~eL~~~a~~lA~~L~-~~gv~~g~~V~i~~~~s~~~iva~lA~~~ 280 (617)
.++.++|+++++++|+++|+++ .++++||+||+++++++|+.|+ ++|+++||+|+|+++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 3678899999999999999998 3578999999999999999999 99999999999999999999999999999
Q ss_pred cCCeEEecCCCCChHHHHHHHHhcCceEEEEccch---------HHHHHHHHHhcCCCeEEEEeCCCCC-CCCCCCCCcC
Q psy8155 281 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAEL---------TDAVQEISTSLGSNVKLFSWSPDTD-SSSSPVPRSQ 350 (617)
Q Consensus 281 aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~ 350 (617)
+|++++|++|.++.+++.++++++++++||+++.. .+.+.+....++....+++++.... ..........
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 241 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDL 241 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEE
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccc
Confidence 99999999999999999999999999999998764 2344444444444445666654221 0000001122
Q ss_pred CcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHH-HHHHHhCCCCCCEEEEcCcchhhHHH
Q psy8155 351 ALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGG 429 (617)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~~~~~~ 429 (617)
.+.++........ ......+++++||+|||||||+||||+++|++++..+. .....++++++|++++.+|++|+.+.
T Consensus 242 ~~~~~~~~~~~~~--~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~ 319 (663)
T 1ry2_A 242 DWATEKKKYKTYY--PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGH 319 (663)
T ss_dssp EHHHHHTTSCSCC--CCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHH
T ss_pred cHHHHHhhcCCCC--CccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhh
Confidence 3444444322111 12245689999999999999999999999999887664 45567899999999999999999997
Q ss_pred HHHHHHHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC--CCCCccCceeeee--ccCCCHH
Q psy8155 430 AMCIGQALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE--KPEDKAHNVRLMF--GNGLRPQ 501 (617)
Q Consensus 430 ~~~~~~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~--Ge~l~~~ 501 (617)
.+.++.+|+.|+++++.+. .++..+++.|++++||++.++|++++.|.+... ....++++||.++ ||+++++
T Consensus 320 ~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~ 399 (663)
T 1ry2_A 320 TYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAE 399 (663)
T ss_dssp HHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHH
T ss_pred HHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHH
Confidence 6788999999999999874 589999999999999999999999999988764 2345689999887 8999999
Q ss_pred HHHHHHHHcC--cccccccccccccceEEe-C-C-C-CCCCHHHHHHHHhhcCCCC----------------CcCcEEEE
Q psy8155 502 IWSEFVDRFR--IAQIGEFYGATEGMAAIL-D-I-N-KSLDVSAVSEGIKKALPSY----------------ARPLFIRC 559 (617)
Q Consensus 502 ~~~~~~~~~~--~~~l~n~YG~TE~~~~v~-~-~-~-~~~~~~~l~~~l~~~Lp~~----------------~~P~~~~~ 559 (617)
+++++.+.++ .+.++|.||+||+...+. . + + ...... .+...+|.+ ..+..+++
T Consensus 400 ~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~g----s~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i 475 (663)
T 1ry2_A 400 VWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG----SASFPFFGIDAVVLDPNTGEELNTSHAEGVLAV 475 (663)
T ss_dssp HHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTT----CCCEECTTCCEEEECSSSTTCEECSSCEEEEEE
T ss_pred HHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCC----ccccCcCCCeEEEEcCCCCCcCCCCCcceEEEE
Confidence 9999999987 247999999999965443 1 1 1 111110 111122221 11123443
Q ss_pred eecccCCccchhhhHHHh-------hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 560 LREVEMTGTYKLKKLDLQ-------KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 560 ~~~lP~t~~GK~dr~~L~-------~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
....|-...|+.++.... .+|| |+||| +|++|+| |+++|+||+||+||++|+||
T Consensus 476 ~g~~p~~~~gy~~~~~~~~~~~~~~~~g~--y~TGD-lg~~d~d-G~l~i~GR~dd~Ik~~G~rI 536 (663)
T 1ry2_A 476 KAAWPSFARTIWKNHDRYLDTYLNPYPGY--YFTGD-GAAKDKD-GYIWILGRVDDVVNVSGHRL 536 (663)
T ss_dssp SSCCTTSCCEETTCHHHHHHHHTSSSTTS--EEEEE-EEEECTT-CCEEECSCTTSCBCSSSCCB
T ss_pred ecCCCchhcccccChHHHHHhhhcCCCCE--EEcCC-EEEEcCC-CCEEEEeecCCEEEECCEEc
Confidence 343354555665443322 2577 78999 9999998 99999999999999999997
No 18
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=6e-55 Score=480.33 Aligned_cols=389 Identities=16% Similarity=0.178 Sum_probs=308.8
Q ss_pred CCHHH-HHHHHHhhCCCceEEEE--CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 208 LTIAD-IFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 208 ~tl~~-~~~~~a~~~p~~~Al~~--~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
.++.+ ++.++++++ +++|+++ .++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 47889 899999999 9999998 4789999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCC-C
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS-P 363 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 363 (617)
+||+||.++.+++.+++++++++++|++.+..+.+..+...++....++.++.... ......+.++....... .
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 178 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-----YRGYQCLDTFIKRNTPPGF 178 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-----BTTBCBHHHHHHHTSCTTC
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-----ccccccHHHHHhcCccccC
Confidence 99999999999999999999999999999888777766655554456666653210 00122344444432111 1
Q ss_pred CCCCCCCC-----C-CCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH---hCCCCCCEEEEcCcchhhHHHHHHHH
Q psy8155 364 PSLSYRVG-----V-QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ---IGFRTKDRFYTPLPLYHTAGGAMCIG 434 (617)
Q Consensus 364 ~~~~~~~~-----~-~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~ 434 (617)
+. .... + ++++||+|||||||+||||+++|+++.+.+.+.... ++++++|++++.+|++|+.++...++
T Consensus 179 ~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 256 (548)
T 2d1s_A 179 QA--SSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLG 256 (548)
T ss_dssp CG--GGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred Cc--ccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHH
Confidence 11 1122 4 899999999999999999999999999988887766 68889999999999999998655466
Q ss_pred HHhHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCc
Q psy8155 435 QALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 435 ~~L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~ 512 (617)
.++ .|+++++.+++++..+++.|+++++|++.++|++++.|++.......++++||.++ ||++++++.++|.+.++.
T Consensus 257 ~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~ 335 (548)
T 2d1s_A 257 YLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNL 335 (548)
T ss_dssp HHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTC
T ss_pred HHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCC
Confidence 677 99999999999999999999999999999999999999987665556788999876 888999999999999976
Q ss_pred ccccccccccccceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEee-c----c------------cCCccchhhhH
Q psy8155 513 AQIGEFYGATEGMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLR-E----V------------EMTGTYKLKKL 574 (617)
Q Consensus 513 ~~l~n~YG~TE~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~-~----l------------P~t~~GK~dr~ 574 (617)
.+++|.||+||+...+. .+...... ..+...+|.. .+.+++ + + |....|+.++.
T Consensus 336 ~~i~~~YG~TE~~~~~~~~~~~~~~~----~~~G~~~~~~----~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~ 407 (548)
T 2d1s_A 336 PGVRQGYGLTETTSAIIITPEGDDKP----GASGKVVPLF----KAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNP 407 (548)
T ss_dssp SCCEEEEECGGGSSEEEECCTTCCCT----TCCBEECTTC----EEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCH
T ss_pred CceeeccccccccceeeecCcccCCC----CCCCccCCCc----eEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCCh
Confidence 68999999999965544 22111000 0011112211 233332 0 1 23335666554
Q ss_pred HHh-----hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 575 DLQ-----KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 575 ~L~-----~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..+ .+|| |+||| +|++|+| |+++|+||.||+||++|+||
T Consensus 408 ~~t~~~f~~~g~--~~TGD-l~~~~~d-G~l~~~GR~~d~ik~~G~~v 451 (548)
T 2d1s_A 408 EATKELIDEEGW--LHTGD-IGYYDEE-KHFFIVDRLKSLIKYKGYQV 451 (548)
T ss_dssp HHHHHHBCTTSC--EEEEE-EEEECTT-CCEEEEEEGGGCBCBTTCCB
T ss_pred HHhhhcccCCcE--EEccC-EEEEcCC-CeEEEeccccceEEECCEEE
Confidence 443 4677 88999 9999998 99999999999999999997
No 19
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.2e-55 Score=493.04 Aligned_cols=399 Identities=15% Similarity=0.182 Sum_probs=306.5
Q ss_pred CHHHHHHHHHhhCCCceEEEE------CCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Q psy8155 209 TIADIFREHAVRSPNKVIFMF------ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282 (617)
Q Consensus 209 tl~~~~~~~a~~~p~~~Al~~------~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG 282 (617)
+++++|+++++++|+++|+++ .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 578899999999999999998 24689999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCChHHHHHHHHhcCceEEEEccch---------HHHHHHHHHhcC--CCeEEEEeCCCCCCCCCCCCCcCC
Q psy8155 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAEL---------TDAVQEISTSLG--SNVKLFSWSPDTDSSSSPVPRSQA 351 (617)
Q Consensus 283 ~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~---------~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~ 351 (617)
++++|++|.++.+++.+++++++++++|+++.. .+.+.+.....+ ....+++++...............
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 236 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW 236 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEE
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCcee
Confidence 999999999999999999999999999998753 234444443332 234566665322110000011223
Q ss_pred cchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHH-HHHHHhCCCCCCEEEEcCcchhhHHHH
Q psy8155 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGGA 430 (617)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~~~~~~~ 430 (617)
+.+++....... ......+++++||+|||||||+||||+++|++++..+. .....++++++|++++.+|++|+.+..
T Consensus 237 ~~~~~~~~~~~~--~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~ 314 (652)
T 1pg4_A 237 WRDLIEKASPEH--QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHS 314 (652)
T ss_dssp HHHHHTTSCSCC--CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH
T ss_pred HHHHHhhcCCCC--CccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechH
Confidence 445544322211 12245689999999999999999999999999887664 456678999999999999999999976
Q ss_pred HHHHHHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC--CCCCccCceeeee--ccCCCHHH
Q psy8155 431 MCIGQALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE--KPEDKAHNVRLMF--GNGLRPQI 502 (617)
Q Consensus 431 ~~~~~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~l~~lr~v~--Ge~l~~~~ 502 (617)
+.++.+|+.|+++++.+. .++..+++.|+++++|++.++|++++.|++... ....++++||.++ ||++++++
T Consensus 315 ~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~ 394 (652)
T 1pg4_A 315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEA 394 (652)
T ss_dssp HTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHH
T ss_pred HHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHH
Confidence 788999999999999874 589999999999999999999999999998754 3345689999887 89999999
Q ss_pred HHHHHHHcCc--ccccccccccccceEEeCC--CC-CCCHHHHHHHHhhcCCCCC--------------cCcEEEEeecc
Q psy8155 503 WSEFVDRFRI--AQIGEFYGATEGMAAILDI--NK-SLDVSAVSEGIKKALPSYA--------------RPLFIRCLREV 563 (617)
Q Consensus 503 ~~~~~~~~~~--~~l~n~YG~TE~~~~v~~~--~~-~~~~~~l~~~l~~~Lp~~~--------------~P~~~~~~~~l 563 (617)
+++|.+.++. +.++|.||+||+...+... +. ..... .+...+|... .+..+++.+.+
T Consensus 395 ~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~----s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~ 470 (652)
T 1pg4_A 395 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAG----SATRPFFGVQPALVDNEGHPQEGATEGNLVITDSW 470 (652)
T ss_dssp HHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTT----CCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCC
T ss_pred HHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCC----ccccCcCCCeEEEECCCCCCcCCCceEEEEEccCC
Confidence 9999999872 3799999999996554421 11 11000 1122222211 11234444433
Q ss_pred cCCccchhhhHHHh-------hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 564 EMTGTYKLKKLDLQ-------KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 564 P~t~~GK~dr~~L~-------~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|....|+.++.... .+|| |+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 471 p~~~~gY~~~~e~~~~~~~~~~~g~--y~TGD-lg~~d~d-G~l~i~GR~dd~Ik~~G~rI 527 (652)
T 1pg4_A 471 PGQARTLFGDHERFEQTYFSTFKNM--YFSGD-GARRDED-GYYWITGRVDDVLNVSGHRL 527 (652)
T ss_dssp TTCCCEETTCHHHHHHHHHSSSTTS--EEEEE-EEEECTT-SCEEEEEESSSEEEETTEEE
T ss_pred CchhhhhcCCHHHHHhhhhhcCCCE--EECCc-EEEEcCC-CcEEEEecCCCEEEECCEEE
Confidence 55555665443221 2677 78999 9999998 99999999999999999986
No 20
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=7.2e-56 Score=484.32 Aligned_cols=378 Identities=16% Similarity=0.202 Sum_probs=296.0
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEe
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vp 287 (617)
+++.++|+++|+++|+++|+++.++++||+||+++++++|++|++.|+++|++|+++++|++++++++|||+++|+++||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCC
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLS 367 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
+||.++.+++.+++++++++++|++...... . ....++.. ..+.+.........+...
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~--~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 138 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVT------D--LPVRIVSE--------------DNLKDIFFTHKGNTPNPE 138 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSS------C--CSSEEEET--------------HHHHHHHHHTTTCCCCGG
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCccccc------c--cccceech--------------hhhhhhcccccccCCCcc
Confidence 9999999999999999999999998542210 0 01111111 011111111112222222
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 368 YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 368 ~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++ +.++.+|+.|+++++.+
T Consensus 139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~ 217 (512)
T 3fce_A 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAID 217 (512)
T ss_dssp GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECC
T ss_pred ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECC
Confidence 34578999999999999999999999999999999999999999999999999999999985 77899999999999998
Q ss_pred C---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccccc
Q psy8155 448 K---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGAT 522 (617)
Q Consensus 448 ~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 522 (617)
. .++..+++.|+++++|++.++|+++..++.........++++|.++ ||++++++.++|.+.++..+++|.||+|
T Consensus 218 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~T 297 (512)
T 3fce_A 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPT 297 (512)
T ss_dssp HHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCG
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccC
Confidence 6 7999999999999999999999999999988777777789999887 8899999999999999777899999999
Q ss_pred ccceEEeCCCCCCCHHHHHHH----HhhcCCCC--------------CcCcEEEEeecccCCccchhhhHHHhh------
Q psy8155 523 EGMAAILDINKSLDVSAVSEG----IKKALPSY--------------ARPLFIRCLREVEMTGTYKLKKLDLQK------ 578 (617)
Q Consensus 523 E~~~~v~~~~~~~~~~~l~~~----l~~~Lp~~--------------~~P~~~~~~~~lP~t~~GK~dr~~L~~------ 578 (617)
|+...+.... ......... +...+|.. ..+..+.+.+ |....|+.++..+++
T Consensus 298 E~~~~~~~~~--~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~~ 373 (512)
T 3fce_A 298 EATVAVTGIH--VTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVG--PSVSVGYLGSPELTEKAFTMI 373 (512)
T ss_dssp GGSSCSEEEE--CCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEES--TTSCSCBTTCHHHHHHHEEEE
T ss_pred hhhhheeeEE--eccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEec--cccChhhcCCchhhhhccccC
Confidence 9954433100 001100000 01111111 1111222222 344456666555544
Q ss_pred --cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 --EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 --~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|| ++||| +|++ +| |+++|+||.||+||++|+||
T Consensus 374 ~~~~~--~~TGD-lg~~-~d-G~l~i~GR~~d~ik~~G~~v 409 (512)
T 3fce_A 374 DGERA--YKTGD-AGYV-EN-GLLFYNGRLDFQIKLHGYRM 409 (512)
T ss_dssp TTEEE--EEEEE-EEEE-ET-TEEEEEEEGGGCEEETTEEE
T ss_pred CCCEE--EeCCc-eEEe-cC-CEEEEecccCCEEEECCEEE
Confidence 346 88999 9999 66 99999999999999999986
No 21
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=5.2e-55 Score=483.32 Aligned_cols=374 Identities=18% Similarity=0.210 Sum_probs=281.3
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
+...+++++|+++++++|+++|+++.++++||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+++|++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 151 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGG 151 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCE
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCC
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPP 364 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (617)
+||+||.++.+++.+++++++++++|++.+....+ .....+...+... ... ...
T Consensus 152 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~-----------------~~~--~~~ 205 (570)
T 4gr5_A 152 YTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------TGTTTLYVEDEAA-----------------SDA--PAG 205 (570)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------CSSEEEECCC--------------------------CC
T ss_pred EEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------cCCcceeeecccc-----------------ccc--ccc
Confidence 99999999999999999999999999997654321 1112222111100 000 111
Q ss_pred CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEE
Q psy8155 365 SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 365 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lv 444 (617)
.......++++|||+|||||||.||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+ .+.++.+|+.|++++
T Consensus 206 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~~l~~G~~~v 283 (570)
T 4gr5_A 206 NLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAF-GLELFGALLFGARCV 283 (570)
T ss_dssp CCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTH-HHHHHHHHTTTCEEE
T ss_pred ccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHH-HHHHHHHHhcCCEEE
Confidence 1123457899999999999999999999999999876655 34567889999999999999766 578899999999999
Q ss_pred EcC--CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccc
Q psy8155 445 IRK--KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYG 520 (617)
Q Consensus 445 i~~--~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG 520 (617)
+.+ .+++..+++.|+++++|++.++|+++..|++... ..+++||.++ ||++++++.+++.+.++..+++|.||
T Consensus 284 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG 360 (570)
T 4gr5_A 284 LQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYG 360 (570)
T ss_dssp ECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred EcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeec
Confidence 987 4799999999999999999999999999987543 3578899887 88899999999999997778999999
Q ss_pred ccccceEEe---CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec------------c----cCCccchhhhHHHhhcCC
Q psy8155 521 ATEGMAAIL---DINKSLDVSAVSEGIKKALPSYARPLFIRCLRE------------V----EMTGTYKLKKLDLQKEGF 581 (617)
Q Consensus 521 ~TE~~~~v~---~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~------------l----P~t~~GK~dr~~L~~~g~ 581 (617)
+||+..... ......... ...++..+|. ..+.++++ + |....|+.++...+++.|
T Consensus 361 ~TE~~~~~~~~~~~~~~~~~~--~~~iG~p~~~----~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f 434 (570)
T 4gr5_A 361 PAESMGFTTHHAVVAGDLSGT--ALPIGVPLAG----KRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERF 434 (570)
T ss_dssp CGGGCSCSEEEECCGGGTTSS--SCCCBEECTT----EEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHE
T ss_pred hhhheeeeeeeeecccccCCC--ccccceeeCC----CEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhccc
Confidence 999854332 100000000 0001111111 12333321 1 344456776666554322
Q ss_pred -----------CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 582 -----------DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 582 -----------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.||+||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 435 ~~~~~~~~~~~~w~~TGD-lg~~d~d-G~l~~~GR~~d~Ik~~G~~v 479 (570)
T 4gr5_A 435 VADPFAGPGGERMYRTGD-LARRRAD-GVLEYVGRADDQVKIRGFRV 479 (570)
T ss_dssp EECTTCCSSCCEEEEEEE-EEEECTT-SCEEEEEC------------
T ss_pred ccCCCCCCCCCEEEeCCC-eEEECCC-CeEEEEcccCCEEEECcEEe
Confidence 1388999 9999998 99999999999999999997
No 22
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3.3e-54 Score=476.21 Aligned_cols=390 Identities=18% Similarity=0.194 Sum_probs=305.1
Q ss_pred CHHHHHHHHHhh-----CCCceEEEEC-----CceecHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHHH
Q psy8155 209 TIADIFREHAVR-----SPNKVIFMFE-----NTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLG 277 (617)
Q Consensus 209 tl~~~~~~~a~~-----~p~~~Al~~~-----~~~lTy~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~s~~~iva~lA 277 (617)
++.++|++++++ +|+++|+++. ++++||+||+++++++|++|++. |+++|++|+|+++|++++++++||
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 467899999998 9999999972 37899999999999999999998 999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhc
Q psy8155 278 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLS 357 (617)
Q Consensus 278 ~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 357 (617)
|+++|+++||+||.++.+++.+++++++++++|++.+..+.+..+...++....++.+++... .....+.+++.
T Consensus 119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 192 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC------DGWLNFKKLLN 192 (570)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC------TTSEEHHHHHH
T ss_pred HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc------cccccHHHHhh
Confidence 999999999999999999999999999999999999888877776666555445565553211 01233444443
Q ss_pred cCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHH-HHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHH
Q psy8155 358 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYF-LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQA 436 (617)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~ 436 (617)
..+...+ .....+++++||+|||||||.||||+++|+.+.+ ...+. ..++++++|++++.+|++|+.++...++.+
T Consensus 193 ~~~~~~~--~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~ 269 (570)
T 3c5e_A 193 EASTTHH--CVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEP 269 (570)
T ss_dssp HSCSCCC--CCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHH
T ss_pred ccccccc--ccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHH
Confidence 3322211 1245689999999999999999999999994432 34444 677889999999999999999976678899
Q ss_pred hHcCcEEEEcC--CCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCc
Q psy8155 437 LIFGCCVVIRK--KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 437 L~~G~~lvi~~--~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~ 512 (617)
|..|+++++.+ .+++..+++.|+++++|++.++|++++.|++.. ....++++||.++ ||++++++.++|.+.++.
T Consensus 270 l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~ 348 (570)
T 3c5e_A 270 WALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQTGL 348 (570)
T ss_dssp HHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSC
T ss_pred HHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHHhCC
Confidence 99999999986 689999999999999999999999999999863 3344678898876 899999999999999876
Q ss_pred ccccccccccccceEEeCCC-CCCCHHHHHHHHhhcCCCCC--------------cCcEEEEeec---ccCCccchhhhH
Q psy8155 513 AQIGEFYGATEGMAAILDIN-KSLDVSAVSEGIKKALPSYA--------------RPLFIRCLRE---VEMTGTYKLKKL 574 (617)
Q Consensus 513 ~~l~n~YG~TE~~~~v~~~~-~~~~~~~l~~~l~~~Lp~~~--------------~P~~~~~~~~---lP~t~~GK~dr~ 574 (617)
+++|.||+||+...+.... ..... ..++..+|... .+..+.+... =|....|+.++.
T Consensus 349 -~i~~~YG~TE~~~~~~~~~~~~~~~----~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~ 423 (570)
T 3c5e_A 349 -DIRESYGQTETGLTCMVSKTMKIKP----GYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNP 423 (570)
T ss_dssp -CCEEEEEETTTEEEEECCTTSCCCT----TCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCH
T ss_pred -chhhccchhhcccceecCcccccCC----CcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCCh
Confidence 7999999999976554221 11110 01112222211 1122222100 122335777766
Q ss_pred HHhh----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 575 DLQK----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 575 ~L~~----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
..++ +|| ++||| +|++|+| |+|+|+||+||+||++|+||
T Consensus 424 ~~t~~~f~~~~--~~TGD-lg~~d~d-G~l~~~GR~dd~Ik~~G~~V 466 (570)
T 3c5e_A 424 DKTAANIRGDF--WLLGD-RGIKDED-GYFQFMGRADDIINSSGYRI 466 (570)
T ss_dssp HHHHHTEETTE--EEEEE-EEEECTT-SCEEEEEEGGGCEEETTEEE
T ss_pred hHhhhhhcCCc--cccce-eEEEcCC-ceEEEEecCCCEEEECCEEE
Confidence 6654 456 88999 9999998 99999999999999999986
No 23
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1e-53 Score=469.25 Aligned_cols=389 Identities=17% Similarity=0.224 Sum_probs=292.6
Q ss_pred CHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEec
Q psy8155 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288 (617)
Q Consensus 209 tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpl 288 (617)
++.++|+++++ +|+++|+++.++++||+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|+++||+
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEec
Confidence 48899999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCC-eEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCCC
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN-VKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLS 367 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (617)
|+.++.+++.+++++++++++|++.+..+.+.......+.. ..++..+..... ......+.++........ ..
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~ 177 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE----PRLAPLFEELIDAAAPAA--KA 177 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC----------CCCBHHHHHHTSCCCS--SC
T ss_pred CcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc----cccccchhhhhccCCCcc--cc
Confidence 99999999999999999999999998877666654433322 344444432110 000123444443222111 12
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEechHHH-HHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEc
Q psy8155 368 YRVGVQDKLIYIYTSGTTGLPKAAVISNHRY-YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446 (617)
Q Consensus 368 ~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~ 446 (617)
....+++++||+|||||||+||||+++|+++ .+...+....++++++|++++.+|++|+.++...++.+|..|+++++.
T Consensus 178 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 257 (529)
T 2v7b_A 178 AATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM 257 (529)
T ss_dssp CCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECC
T ss_pred cCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEe
Confidence 2457899999999999999999999999999 565555555678899999999999999999766677899999999988
Q ss_pred -CCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccccc
Q psy8155 447 -KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523 (617)
Q Consensus 447 -~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE 523 (617)
+.+++..+++.|+++++|++.++|+++..+++..........++|.+. ||++++++.++|.+.++. +++|.||+||
T Consensus 258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~-~i~~~YG~TE 336 (529)
T 2v7b_A 258 AERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGC-EILDGIGSTE 336 (529)
T ss_dssp CSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSC-CEEEEEECTT
T ss_pred cCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCC-ceeeeEchhh
Confidence 578999999999999999999999999999987654433234788776 888999999999999976 7999999999
Q ss_pred cceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec----c------------cCCccchhhhHHHhh----cCCC
Q psy8155 524 GMAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLRE----V------------EMTGTYKLKKLDLQK----EGFD 582 (617)
Q Consensus 524 ~~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~----l------------P~t~~GK~dr~~L~~----~g~~ 582 (617)
+...+. ......... .++..+|.. .+.++++ + |....|++++...++ +||
T Consensus 337 ~~~~~~~~~~~~~~~~----~~G~p~~~~----~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~- 407 (529)
T 2v7b_A 337 MLHIFLSNRAGAVEYG----TTGRPVPGY----EIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEW- 407 (529)
T ss_dssp TSSEEEECCTTCCCTT----SCCEECTTC----EEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTE-
T ss_pred cCceeeccccCCCccC----CcccCCCCC----EEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCC-
Confidence 954333 211110000 011122211 2333321 1 333456666555543 466
Q ss_pred CCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 583 PNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 583 ~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
++||| +|++|+| |+++|+||+||+||++|+||
T Consensus 408 -~~TGD-l~~~~~~-G~l~~~GR~dd~ik~~G~~v 439 (529)
T 2v7b_A 408 -IRSGD-KYCRLPN-GCYVYAGRSDDMLKVSGQYV 439 (529)
T ss_dssp -EEEEE-EEEECTT-SCEEEEEEGGGCBC----CB
T ss_pred -cccCc-eEEECCC-ccEEEeCccCCeEEECCEEE
Confidence 78999 9999997 99999999999999999997
No 24
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1e-53 Score=467.00 Aligned_cols=379 Identities=19% Similarity=0.190 Sum_probs=298.1
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
+++.++|+++|+++|+++|+++.++++||+||+++++++|++|++. |+++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 4789999999999999999999999999999999999999999875 888999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (617)
|+||.+|.+++.+++++++++++|++...... ....... ...+.++....... ...
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~~~~~-----------------~~~~~~~~~~~~~~-~~~ 136 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVGQQIQ-----------------TVSAEELLENEGGS-VSQ 136 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCCCSSC-----------------EEEHHHHHTSCSCC-CCG
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccch------hcccccc-----------------eecHhhhhccccCC-ccc
Confidence 99999999999999999999999997543210 0001111 11122222222111 112
Q ss_pred CCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEc
Q psy8155 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446 (617)
Q Consensus 367 ~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~ 446 (617)
.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++ +.++.+|..|+++++.
T Consensus 137 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 137 DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCV 215 (511)
T ss_dssp GGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEEC
T ss_pred cccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEc
Confidence 234578899999999999999999999999999999999999999999999999999999885 7789999999999998
Q ss_pred CC---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccccc
Q psy8155 447 KK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGA 521 (617)
Q Consensus 447 ~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~ 521 (617)
+. .++..+++.|+++++|++.++|+++..++..+......++++|.+. ||++++++.++|.+.++..+++|.||+
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~ 295 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGP 295 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCC
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCccc
Confidence 86 6899999999999999999999999999988776677788998876 889999999999999976789999999
Q ss_pred cccceEEeC--CC-------CCCCHH--------HHHHHHhhcCCCCCcCcEEEEeecccCCccchhhhHHHhhcCC---
Q psy8155 522 TEGMAAILD--IN-------KSLDVS--------AVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF--- 581 (617)
Q Consensus 522 TE~~~~v~~--~~-------~~~~~~--------~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~g~--- 581 (617)
||+...+.. .. ...... .+.+.-.+.+|.- .+..+.+.+ |....|+.++...+++.|
T Consensus 296 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g-~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~~ 372 (511)
T 3e7w_A 296 TEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEG-EKGEIVIAG--PSVSRGYLGEPELTEKAFFSH 372 (511)
T ss_dssp GGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTT-CCEEEEEES--TTSCCCBTTCHHHHHHHEEES
T ss_pred chheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCC-CceEEEEec--CccChhhCCCcccchhhhcCC
Confidence 998543321 00 000000 0000001111111 112222222 334457776666654332
Q ss_pred ---CCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 582 ---DPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 582 ---~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.||+||| +|+++ | |+|+|+||+||+||++|+||
T Consensus 373 ~g~~~~~TGD-lg~~~-d-G~l~~~GR~~d~ik~~G~~v 408 (511)
T 3e7w_A 373 EGQWAYRTGD-AGFIQ-D-GQIFCQGRLDFQIKLHGYRM 408 (511)
T ss_dssp SSSEEEEEEE-EEEEE-T-TEEEEEEESSSEEEETTEEE
T ss_pred CCCEEEeCCC-eEEcc-C-CeEEEEccccCEEEECCEEe
Confidence 1488999 99995 6 99999999999999999986
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=6.8e-54 Score=469.78 Aligned_cols=378 Identities=17% Similarity=0.156 Sum_probs=291.0
Q ss_pred CCCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE
Q psy8155 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA 286 (617)
Q Consensus 207 ~~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v 286 (617)
..++.++|+++++++|+++|+.+.++++||+||+++++++|++|++.|+++|++|+++++|++++++++|||+++|+++|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v 82 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYI 82 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCCC
Q psy8155 287 LINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366 (617)
Q Consensus 287 pldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (617)
|+||.++.+++.+++++++++++|++.+....+ ....++.+++ +........ ....
T Consensus 83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~~~~~~~~~--------------~~~~~~~~~--~~~~ 138 (521)
T 3l8c_A 83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EGISLVSLSE--------------IESAKLAEM--PYER 138 (521)
T ss_dssp EEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TTSEEEEHHH--------------HHHHHHHTC--CCCC
T ss_pred ecCccccHHHHHHHHHhCCCCEEEecCcccccc--------ccCcccchhh--------------hhhcccccC--Cccc
Confidence 999999999999999999999999987643211 1112221110 111111111 1111
Q ss_pred CCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH--hCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEE
Q psy8155 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ--IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 367 ~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lv 444 (617)
.....+++++||+|||||||.||||+++|+++.+.+.+.... +++.+++++++..|++|+.+. ..++.++..|++++
T Consensus 139 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~ 217 (521)
T 3l8c_A 139 THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLF 217 (521)
T ss_dssp SSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEE
T ss_pred CCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEE
Confidence 234578999999999999999999999999999988887766 678899999999999998884 77889999999999
Q ss_pred EcCC---CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCcccccccc
Q psy8155 445 IRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFY 519 (617)
Q Consensus 445 i~~~---~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~Y 519 (617)
+.+. .++..+++.|+++++|++.++|+++..++.........++++|.+. |+++++++.+++.+.++..+++|.|
T Consensus 218 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~Y 297 (521)
T 3l8c_A 218 ALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAY 297 (521)
T ss_dssp ECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred EcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCc
Confidence 9886 4899999999999999999999999999988776667789999887 8899999999999999767899999
Q ss_pred cccccceEEeCCCCCCCHHHHHH----HHhhcCCCC--------------CcCcEEEEeecccCCccchhhhHHHhh---
Q psy8155 520 GATEGMAAILDINKSLDVSAVSE----GIKKALPSY--------------ARPLFIRCLREVEMTGTYKLKKLDLQK--- 578 (617)
Q Consensus 520 G~TE~~~~v~~~~~~~~~~~l~~----~l~~~Lp~~--------------~~P~~~~~~~~lP~t~~GK~dr~~L~~--- 578 (617)
|+||+...+.... ........ .++..+|.. ..+..+.+.+ |....|+.++...++
T Consensus 298 G~TE~~~~~~~~~--~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f 373 (521)
T 3l8c_A 298 GPTEATVALSAIE--ITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTG--PAVSKGYLNNPEKTAEAF 373 (521)
T ss_dssp CCGGGSSCSEEEE--ECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEES--TTSCSCBTTCHHHHHHHE
T ss_pred CccHHhhhhceee--cccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecc--cccChhhcCCchHhhccC
Confidence 9999854332100 00000000 011111111 1112233322 444466766655543
Q ss_pred -----cCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 579 -----EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 579 -----~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
+|| |+||| +|++|+| |+++|+||+||+||++|+||
T Consensus 374 ~~~~~~~~--~~TGD-lg~~d~d-G~l~~~GR~~d~i~~~G~~v 413 (521)
T 3l8c_A 374 FTFKGQPA--YHTGD-IGSLTED-NILLYGGRLDFQIKYAGYRI 413 (521)
T ss_dssp EEETTEEE--EEEEE-EEEECSS-SCEEEEEEGGGBCC-----C
T ss_pred cCCCCcee--eeCCC-EEEEeCC-CeEEEeCcccceEeECCEEe
Confidence 345 88999 9999997 99999999999999999997
No 26
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2e-54 Score=481.51 Aligned_cols=388 Identities=16% Similarity=0.147 Sum_probs=296.9
Q ss_pred ccCCCHHHHHHHHHhhCCCceEEEEC----CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHh
Q psy8155 205 QKDLTIADIFREHAVRSPNKVIFMFE----NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK 280 (617)
Q Consensus 205 ~~~~tl~~~~~~~a~~~p~~~Al~~~----~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~ 280 (617)
....|+.++|.++|+++|+++|+++. ++++||+||+++++++|++|++.|+++|++|+++++|++++++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 55789999999999999999999874 58999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCC---hHHHHHHHHhcCceEEEEccchHHHHHHHH-HhcCC--CeEEEEeCCCCCCCCCCCCCcCCcch
Q psy8155 281 LGVITALINHNLR---QNSLLHCINIAGVSAFIYGAELTDAVQEIS-TSLGS--NVKLFSWSPDTDSSSSPVPRSQALSP 354 (617)
Q Consensus 281 aG~~~vpldp~~p---~~~l~~il~~~~~~~vl~~~~~~~~~~~~~-~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~ 354 (617)
+|+++||++|.++ .+++.++++++++++++++.+..+.+.... ...+. ....+..+.
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 150 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALES----------------- 150 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGG-----------------
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechh-----------------
Confidence 9999999999884 578999999999999999987665543321 11111 111221111
Q ss_pred hhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHH
Q psy8155 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 434 (617)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 434 (617)
+...... ........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++++|++|+.++...++
T Consensus 151 ~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~ 228 (590)
T 3kxw_A 151 IELNRSS--SWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCIL 228 (590)
T ss_dssp CCGGGGG--GCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTH
T ss_pred ccccccc--cCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHH
Confidence 0000000 01112457899999999999999999999999999999999999999999999999999999999755588
Q ss_pred HHhHcCcEEEEcCCC----CHHHHHHHHHHcCCcEEeecHHHHHHHHcCC---CCCCCccCceeeee--ccCCCHHHHHH
Q psy8155 435 QALIFGCCVVIRKKF----SASNYFSDVCKYKCTVGQYIGEMCRYLLSTP---EKPEDKAHNVRLMF--GNGLRPQIWSE 505 (617)
Q Consensus 435 ~~L~~G~~lvi~~~~----d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~~~l~~lr~v~--Ge~l~~~~~~~ 505 (617)
.+|+.|+++++.+++ ++..+++.|+++++|++.++|+++..+++.. .....++++||.++ |+++++++.++
T Consensus 229 ~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~ 308 (590)
T 3kxw_A 229 TPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEH 308 (590)
T ss_dssp HHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred HHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHH
Confidence 999999999999864 8999999999999999999999999887652 23345688999887 88899999999
Q ss_pred HHHHcCc-----ccccccccccccceEEeCC--CCCC---------------------CHHHH-HHHHh-----------
Q psy8155 506 FVDRFRI-----AQIGEFYGATEGMAAILDI--NKSL---------------------DVSAV-SEGIK----------- 545 (617)
Q Consensus 506 ~~~~~~~-----~~l~n~YG~TE~~~~v~~~--~~~~---------------------~~~~l-~~~l~----------- 545 (617)
|.+.++. .+++|.||+||+...+... +... ..... ...++
T Consensus 309 ~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~v~i~d~ 388 (590)
T 3kxw_A 309 FYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDP 388 (590)
T ss_dssp HHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSEEEEECT
T ss_pred HHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCCeEEEcC
Confidence 9999852 3699999999996655411 1000 00000 00000
Q ss_pred ---hcCCCCCcCcEEEEeecccCCccchhhhHHHhhcCC-----------CCCccCCeeEEEeCCCceeeCCHHHHHHHh
Q psy8155 546 ---KALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF-----------DPNVIQDRLYYLSSKGVYEELTPEVYKDLV 611 (617)
Q Consensus 546 ---~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~g~-----------~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~ 611 (617)
..+|. ..+..+.+-+ |....|+.++...+++.| .||+||| +|++| | |+|+|+||+|||||
T Consensus 389 ~~~~~~~~-g~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGD-lg~~d-d-G~l~~~GR~dd~Ik 462 (590)
T 3kxw_A 389 DTLIPCDF-DQVGEIWVQS--NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGD-LGFLH-E-NELYVTGRIKDLII 462 (590)
T ss_dssp TTCCBCCT-TBCEEEEEES--TTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEE-EEEEE-T-TEEEEEEESSCHHH
T ss_pred CCCcCCCC-CCEEEEEEeC--CcccccccCChhHHHHHHhccccCCCCCCcEEecCc-EEEEE-C-CEEEEEcCccceEE
Confidence 01111 0111222221 344456666655543322 1488999 99999 7 99999999999999
Q ss_pred cCCcCC
Q psy8155 612 QGNIRL 617 (617)
Q Consensus 612 ~~G~~v 617 (617)
++|+||
T Consensus 463 ~~G~~v 468 (590)
T 3kxw_A 463 IYGKNH 468 (590)
T ss_dssp HHHHTT
T ss_pred ECCEec
Confidence 999997
No 27
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.3e-52 Score=453.17 Aligned_cols=305 Identities=16% Similarity=0.142 Sum_probs=248.1
Q ss_pred hccCCCHHHHHHHHHhhCCCceEEEECC---------ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHH
Q psy8155 204 AQKDLTIADIFREHAVRSPNKVIFMFEN---------TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCL 274 (617)
Q Consensus 204 ~~~~~tl~~~~~~~a~~~p~~~Al~~~~---------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva 274 (617)
..+..|+.++|+++++++|+++|+++.+ +++||+||+++++++|++|++.|+ +|++|+|+++|+++++++
T Consensus 20 ~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~ 98 (480)
T 3t5a_A 20 HMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVA 98 (480)
T ss_dssp ----CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHH
T ss_pred CCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHH
Confidence 3456899999999999999999999865 899999999999999999999996 999999999999999999
Q ss_pred HHHHHhcCCeEEecCC---CCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCC--CeEEEEeCCCCCCCCCCCCCc
Q psy8155 275 WLGLSKLGVITALINH---NLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS--NVKLFSWSPDTDSSSSPVPRS 349 (617)
Q Consensus 275 ~lA~~~aG~~~vpldp---~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~ 349 (617)
+|||+++|+++||||+ .++.+++.+++++++++++|++.+..+.+.......+. ...++.++...
T Consensus 99 ~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 168 (480)
T 3t5a_A 99 FLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD---------- 168 (480)
T ss_dssp HHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC----------
T ss_pred HHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc----------
Confidence 9999999999999999 88999999999999999999999887766554322221 12333333211
Q ss_pred CCcchhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCC------CCEEEEcCcc
Q psy8155 350 QALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT------KDRFYTPLPL 423 (617)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~------~d~~l~~~p~ 423 (617)
.... .........++++|||+|||||||+||||+++|+++.+.+.+....+++.+ +|++++.+|+
T Consensus 169 -------~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 239 (480)
T 3t5a_A 169 -------LDAP--NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPF 239 (480)
T ss_dssp -------TTCC-----CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCT
T ss_pred -------cccc--cCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCC
Confidence 0011 111123457889999999999999999999999999999999988888888 9999999999
Q ss_pred hhhHHHHHHHHHHhHcCcEEEEcCCC----CHHHHHHHHHHcCCcEEeecHHHHHHHHcC----CCCCCCccCceeeee-
Q psy8155 424 YHTAGGAMCIGQALIFGCCVVIRKKF----SASNYFSDVCKYKCTVGQYIGEMCRYLLST----PEKPEDKAHNVRLMF- 494 (617)
Q Consensus 424 ~~~~~~~~~~~~~L~~G~~lvi~~~~----d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~----~~~~~~~l~~lr~v~- 494 (617)
+|+.+++..++.+|+.|+++++.++. ++..+++.|+++++| +..+|+++..++.. ......++++||.++
T Consensus 240 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~ 318 (480)
T 3t5a_A 240 YHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILS 318 (480)
T ss_dssp TSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEE
T ss_pred cCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeee
Confidence 99999878899999999999998753 999999999999999 78889988877753 333455689999887
Q ss_pred -ccCCCHHHHHHHHHHcC-----cccccccccccccceEEe
Q psy8155 495 -GNGLRPQIWSEFVDRFR-----IAQIGEFYGATEGMAAIL 529 (617)
Q Consensus 495 -Ge~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~v~ 529 (617)
||+++++++++|.+.++ ..+++|.||+||+...+.
T Consensus 319 gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 359 (480)
T 3t5a_A 319 GSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA 359 (480)
T ss_dssp CCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred cCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence 88899999999999984 347999999999977665
No 28
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.5e-52 Score=455.19 Aligned_cols=354 Identities=18% Similarity=0.216 Sum_probs=272.0
Q ss_pred CCHHHHHHHHHhhCCCceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEe
Q psy8155 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 208 ~tl~~~~~~~a~~~p~~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vp 287 (617)
+|+.++|.++|+++|+++|+++.++++||+||+++++++|++|++. +|++|+|+++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 3677899999999999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCC-----------CCCCCcCCcchhh
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSS-----------SPVPRSQALSPLL 356 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~ 356 (617)
+|+.++.+++.+++++++++++|++.+..... ......+....... .............
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRG----------FQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVV 147 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTT----------SEEEETTC------------------------------
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEcccccccc----------ccccccccceeeeeecccccccccccccccccchhhcc
Confidence 99999999999999999999999987654321 11111110000000 0000000000000
Q ss_pred ccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHH
Q psy8155 357 SEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQA 436 (617)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~ 436 (617)
.. ...........++++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++ ..++.+
T Consensus 148 ~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~ 225 (501)
T 3ipl_A 148 PK-ESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL-SVLLRA 225 (501)
T ss_dssp ---CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHH-HHHHHH
T ss_pred cc-CCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHH-HHHHHH
Confidence 00 0000011224578999999999999999999999999999999999999999999999999999999996 558899
Q ss_pred hHcCcEEEEcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccc
Q psy8155 437 LIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQ 514 (617)
Q Consensus 437 L~~G~~lvi~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~ 514 (617)
++.|+++++.+++++..+++.|+++++|++.++|++++.|++...... .+||.++ ||++++++.+++.+ ++. +
T Consensus 226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~~~-~ 300 (501)
T 3ipl_A 226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-YNL-P 300 (501)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-TTC-C
T ss_pred HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-hCC-C
Confidence 999999999999999999999999999999999999999998765433 2787776 88999999999987 455 7
Q ss_pred cccccccccc----------------------------------------------------------------------
Q psy8155 515 IGEFYGATEG---------------------------------------------------------------------- 524 (617)
Q Consensus 515 l~n~YG~TE~---------------------------------------------------------------------- 524 (617)
++|.||+||+
T Consensus 301 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TG 380 (501)
T 3ipl_A 301 IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTG 380 (501)
T ss_dssp EEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCCSSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEE
T ss_pred EeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCCCCCccEEEEeccchhhhhCcChhhcchhcCCceecC
Confidence 9999999998
Q ss_pred -----------------------------------------------------------ceEEeCCCCCCCHHHHHHHHh
Q psy8155 525 -----------------------------------------------------------MAAILDINKSLDVSAVSEGIK 545 (617)
Q Consensus 525 -----------------------------------------------------------~~~v~~~~~~~~~~~l~~~l~ 545 (617)
.++++..+...+.+++++++.
T Consensus 381 Dl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~ 460 (501)
T 3ipl_A 381 DIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLS 460 (501)
T ss_dssp EEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHH
T ss_pred CEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHH
Confidence 122222345567899999999
Q ss_pred hcCCCCCcCcEEEEeecccCCccchhhhHHHhhcCC
Q psy8155 546 KALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF 581 (617)
Q Consensus 546 ~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~g~ 581 (617)
++||.||+|..+.+++++|+|++||+||++|+++.-
T Consensus 461 ~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~ 496 (501)
T 3ipl_A 461 KHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGH 496 (501)
T ss_dssp HHSCGGGSCSEEEECSSCC-----------------
T ss_pred hhCccccCCCEEEEecccCCCCCCCEeHHHHhhccc
Confidence 999999999999999999999999999999998764
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=6.6e-52 Score=459.92 Aligned_cols=386 Identities=20% Similarity=0.176 Sum_probs=300.2
Q ss_pred hhccCCCHHHHHHHHHhhCCCceEEEEC---CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHH
Q psy8155 203 VAQKDLTIADIFREHAVRSPNKVIFMFE---NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 279 (617)
Q Consensus 203 ~~~~~~tl~~~~~~~a~~~p~~~Al~~~---~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~ 279 (617)
......|+.++|+++++++|+.+++.+. ++++||+||+++++++|++|+++|+++|++|+|+++|++++++++|||+
T Consensus 16 ~~~~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 95 (576)
T 3gqw_A 16 RYADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQ 95 (576)
T ss_dssp CCSCCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 3455679999999999999999998663 4789999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEecCCCCC-------hHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCc
Q psy8155 280 KLGVITALINHNLR-------QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 352 (617)
Q Consensus 280 ~aG~~~vpldp~~p-------~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 352 (617)
++|+++||+++.++ .+++.+++++++++++|++.+..+.+.......+. ..++... +
T Consensus 96 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~---------------~ 159 (576)
T 3gqw_A 96 YAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPE-LHVLSHA---------------W 159 (576)
T ss_dssp HTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTT-CEEEEHH---------------H
T ss_pred HhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCc-ceecchh---------------h
Confidence 99999999999999 89999999999999999999988877766544432 2222110 0
Q ss_pred chhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH-hCCCCCCEEEEcCcchhhHHHHH
Q psy8155 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ-IGFRTKDRFYTPLPLYHTAGGAM 431 (617)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~d~~l~~~p~~~~~~~~~ 431 (617)
...... .........+++++||+|||||||.||||+++|+++.+.+.+.... ++++++|++++++|++|+.++..
T Consensus 160 ---~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~ 235 (576)
T 3gqw_A 160 ---FKALPE-ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVG 235 (576)
T ss_dssp ---HHTSCC-CCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHH
T ss_pred ---hhcccc-cccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHH
Confidence 001111 1111223468999999999999999999999999999988877655 78999999999999999999766
Q ss_pred HHHHHhHcCcEEEEcCC----CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCC---CCCCccCceeeee--ccCCCHHH
Q psy8155 432 CIGQALIFGCCVVIRKK----FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE---KPEDKAHNVRLMF--GNGLRPQI 502 (617)
Q Consensus 432 ~~~~~L~~G~~lvi~~~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~l~~lr~v~--Ge~l~~~~ 502 (617)
.++.++..|+++++.+. +++..+++.|+++++|++.++|+++..+.+... ....++++||.++ ||++++++
T Consensus 236 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~ 315 (576)
T 3gqw_A 236 FLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQ 315 (576)
T ss_dssp HTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHH
T ss_pred HHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHH
Confidence 67788999999998874 689999999999999999999999988765533 2234578899887 88999999
Q ss_pred HHHHHHHcC-----cccccccccccccceEEeCC--CCCCC----HHHHHHH-------------------HhhcCCCCC
Q psy8155 503 WSEFVDRFR-----IAQIGEFYGATEGMAAILDI--NKSLD----VSAVSEG-------------------IKKALPSYA 552 (617)
Q Consensus 503 ~~~~~~~~~-----~~~l~n~YG~TE~~~~v~~~--~~~~~----~~~l~~~-------------------l~~~Lp~~~ 552 (617)
.++|.+.++ ..+++|.||+||+...+... ..... ...+... ++..+|..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~- 394 (576)
T 3gqw_A 316 LHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEH- 394 (576)
T ss_dssp HHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTC-
T ss_pred HHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCC-
Confidence 999999984 45899999999996655411 11100 0011111 11112211
Q ss_pred cCcEEEEeec----c------------cCCccchhhhHH----HhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhc
Q psy8155 553 RPLFIRCLRE----V------------EMTGTYKLKKLD----LQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQ 612 (617)
Q Consensus 553 ~P~~~~~~~~----l------------P~t~~GK~dr~~----L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~ 612 (617)
.+.++++ + |....|+.++.. ...+|| ++||| +|++ +| |+++|+||+||+||+
T Consensus 395 ---~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~--~~TGD-l~~~-~d-G~l~~~GR~dd~ik~ 466 (576)
T 3gqw_A 395 ---GIEIRNEAGMPVAERVVGHICISGPSLMSGYFGDQVSQDEIAATGW--LDTGD-LGYL-LD-GYLYVTGRIKDLIII 466 (576)
T ss_dssp ---EEEEECTTSCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSC--EEEEE-EEEE-ET-TEEEEEEETTTCEEE
T ss_pred ---eEEEECCCCCCCCCCCeEEEEEeCccccccccCCccccccccCCCe--eeccc-eEEE-EC-CEEEEEecCcceEEE
Confidence 2333321 1 333455554433 345788 78999 9999 56 999999999999999
Q ss_pred CCcCC
Q psy8155 613 GNIRL 617 (617)
Q Consensus 613 ~G~~v 617 (617)
+|+||
T Consensus 467 ~G~~v 471 (576)
T 3gqw_A 467 RGRNI 471 (576)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 99986
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.3e-51 Score=455.75 Aligned_cols=379 Identities=16% Similarity=0.158 Sum_probs=272.2
Q ss_pred hhccCCCHHHHHHHHHhhCCCceEEEECC----------ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHH
Q psy8155 203 VAQKDLTIADIFREHAVRSPNKVIFMFEN----------TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 272 (617)
Q Consensus 203 ~~~~~~tl~~~~~~~a~~~p~~~Al~~~~----------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~i 272 (617)
......|+.++|+++|+++|+++|+++.+ +++||+||+++++++|++|.+.|+ +||+|+++++|+++++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~ 93 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF 93 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH
Confidence 44567899999999999999999999753 789999999999999999999999 7999999999999999
Q ss_pred HHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCc
Q psy8155 273 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 352 (617)
Q Consensus 273 va~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 352 (617)
+++|||+++|+++||+||.++.+++.+++++++++++|++.+....+ .......++..+ ...+
T Consensus 94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~------------~~~~ 156 (562)
T 3ite_A 94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTK------------NQSF 156 (562)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETT------------CHHH
T ss_pred HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeeccc------------chhh
Confidence 99999999999999999999999999999999999999986643221 111122222221 1111
Q ss_pred chhhccCCCCCCCCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHH--------hCCCCCCEEEEcCcch
Q psy8155 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ--------IGFRTKDRFYTPLPLY 424 (617)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--------~~~~~~d~~l~~~p~~ 424 (617)
.+......... ......+++++||+|||||||.||||+++|+++.+.+.+.... +.+...+++++..|++
T Consensus 157 ~~~~~~~~~~~--~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (562)
T 3ite_A 157 IENLSTQDTSD--ILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRA 234 (562)
T ss_dssp HHHHHHSCCSC--CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTT
T ss_pred hhhcccccccc--cccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCch
Confidence 22222211111 1123457889999999999999999999999999888766554 4478889999999999
Q ss_pred hhHHHHHHHHHHhHcCcEEEEcCCC-CHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHH
Q psy8155 425 HTAGGAMCIGQALIFGCCVVIRKKF-SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQ 501 (617)
Q Consensus 425 ~~~~~~~~~~~~L~~G~~lvi~~~~-d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~ 501 (617)
|+.+ +.+++.++..|+++++.+.. .+..+.+.++++++|++.++|++++.+... ..++++||.++ |++++++
T Consensus 235 ~~~~-~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~ 309 (562)
T 3ite_A 235 FDVH-IGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPR 309 (562)
T ss_dssp STHH-HHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHH
T ss_pred hhhh-HHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHH
Confidence 9888 47888999999999998764 367889999999999999999999887543 34678999886 8889999
Q ss_pred HHHHHHHHcCcccccccccccccceEEe--CCCCCCCHHHHHHHHhhcCCCC---------------CcCcEEEEeeccc
Q psy8155 502 IWSEFVDRFRIAQIGEFYGATEGMAAIL--DINKSLDVSAVSEGIKKALPSY---------------ARPLFIRCLREVE 564 (617)
Q Consensus 502 ~~~~~~~~~~~~~l~n~YG~TE~~~~v~--~~~~~~~~~~l~~~l~~~Lp~~---------------~~P~~~~~~~~lP 564 (617)
+.++|.+.++. +++|.||+||+...+. ......... .+...+|.. ..+..+.+.+ |
T Consensus 310 ~~~~~~~~~~~-~~~~~YG~TE~~~~~~~~~~~~~~~~~----~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g--~ 382 (562)
T 3ite_A 310 TQQIWSSSDRV-ALVNVYGPTEVTIGCSAGRILPDSDTR----CIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEG--S 382 (562)
T ss_dssp HHHHHTTCSSC-EEEEEECCGGGCSCSEEEECCTTSCTT----EEEEECTTCEEEEECTTSSCBCCTTSCEEEEEES--T
T ss_pred HHHHHhhCCCc-EEEEeeccchheeeeeeeeecCCCCCc----cccccCCCCeEEEEeCCCCCCCCCCCceEEEEec--c
Confidence 99999887765 7999999999854332 111110000 011122211 1112222222 2
Q ss_pred CCccchhhhHHHhh----cC--CCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 565 MTGTYKLKKLDLQK----EG--FDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 565 ~t~~GK~dr~~L~~----~g--~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
....|+.++...++ +| | |+||| +|++|+| |+|+|+||+|||||++|+||
T Consensus 383 ~v~~GY~~~p~~t~~~~~~g~~w--~~TGD-lg~~d~d-G~l~~~GR~dd~Ik~~G~~v 437 (562)
T 3ite_A 383 LVANGYLNRPDAKGFCDINGRKM--YRTGD-IVRMDAD-SSILFLGRKDEQVKVRGQRL 437 (562)
T ss_dssp TSCCEESSCTTCCSEEEETTEEE--EEEEE-EEEECTT-SCEEEEEEC-----------
T ss_pred ccchhhCCCccccccccCCCCEE--EecCC-EEEEcCC-CeEEEEccccCEEeECcEEE
Confidence 33445555544332 33 6 88999 9999998 99999999999999999997
No 31
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=8.5e-53 Score=458.58 Aligned_cols=367 Identities=17% Similarity=0.129 Sum_probs=285.4
Q ss_pred cCCCHHHHHHHHHhhCCC-ceEEEECCceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCe
Q psy8155 206 KDLTIADIFREHAVRSPN-KVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284 (617)
Q Consensus 206 ~~~tl~~~~~~~a~~~p~-~~Al~~~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~ 284 (617)
.-.++.+.|.++++++|+ ++|++++++++||+||+++++++|++|. .|++|+++++|++++++++|||+++|++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~ 94 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVA 94 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 356888999999999997 9999999999999999999999999875 3789999999999999999999999999
Q ss_pred EEecCCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcCCCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCC
Q psy8155 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPP 364 (617)
Q Consensus 285 ~vpldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (617)
+||+||.+|.+++.+++++++++++|++.+... .... .....+.++... ...
T Consensus 95 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~-~~~~~~~~~~~~----------------------~~~ 146 (505)
T 3nyq_A 95 AVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPAL-GALERVDVDVRA----------------------RGA 146 (505)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGG-TTSEEEECCTTC----------------------CCC
T ss_pred EEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhh-cccccccccccc----------------------ccC
Confidence 999999999999999999999999999865210 0011 112222222110 001
Q ss_pred CCCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEE
Q psy8155 365 SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 365 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lv 444 (617)
.......+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|..+++++++.+|..|++++
T Consensus 147 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~ 226 (505)
T 3nyq_A 147 VPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVR 226 (505)
T ss_dssp CCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEE
T ss_pred CCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEE
Confidence 11124578899999999999999999999999999999999999999999999999999999998788999999999999
Q ss_pred EcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCC---CCccCceeeee--ccCCCHHHHHHHHHHcCcccccccc
Q psy8155 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKP---EDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFY 519 (617)
Q Consensus 445 i~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~Y 519 (617)
+.+++++..+++.+ ++++|+++++|+++..|++..... ...++++|.++ |+++++++.++|.+.++. +++|.|
T Consensus 227 ~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~-~~~~~Y 304 (505)
T 3nyq_A 227 HLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGR-RVIERY 304 (505)
T ss_dssp ECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSC-CCEEEE
T ss_pred ECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCC-eeeccc
Confidence 99999999999999 889999999999999998732211 23467788776 788999999999999876 799999
Q ss_pred cccccceEEeCCC-CCCCHHHHHHHHhhcCCCC-----------------CcCcEEEEeecccCCccchhhhHHHh----
Q psy8155 520 GATEGMAAILDIN-KSLDVSAVSEGIKKALPSY-----------------ARPLFIRCLREVEMTGTYKLKKLDLQ---- 577 (617)
Q Consensus 520 G~TE~~~~v~~~~-~~~~~~~l~~~l~~~Lp~~-----------------~~P~~~~~~~~lP~t~~GK~dr~~L~---- 577 (617)
|+||+...+.... ...... .+...+|.. ..+..+.+.+ |....|++++...+
T Consensus 305 G~TE~~~~~~~~~~~~~~~~----~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f 378 (505)
T 3nyq_A 305 GMTETLMNTSVRADGEPRAG----TVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRG--PNLFTEYLNRPDATAAAF 378 (505)
T ss_dssp EETTTEEEEECCTTSCCCTT----CCCEECTTCEEEEC-----CCCCCCSCCCEEEEEES--TTSCCEETTCHHHHHHTB
T ss_pred chhhcccccccCCCCCCCCC----CcccCCCCCEEEEECCCCCCcccCCCCceEEEEEec--CchhhhhCCChhHhhhhh
Confidence 9999976655221 111000 011112111 1112222221 34456777665555
Q ss_pred -hcCCCCCccCCeeEEEeCCCceeeCCHHH-HHHHhcCCcCC
Q psy8155 578 -KEGFDPNVIQDRLYYLSSKGVYEELTPEV-YKDLVQGNIRL 617 (617)
Q Consensus 578 -~~g~~~~~TGD~lg~~d~d~G~l~i~GR~-~d~I~~~G~~v 617 (617)
++|| |+||| +|++|+| |+++|+||+ ||+||++|+||
T Consensus 379 ~~~g~--y~TGD-l~~~~~d-G~l~~~GR~~d~~ik~~G~~v 416 (505)
T 3nyq_A 379 TEDGF--FRTGD-MAVRDPD-GYVRIVGRKATDLIKSGGYKI 416 (505)
T ss_dssp CTTSC--EEEEE-EEEECTT-SCEEEEEESSCCCEEETTEEE
T ss_pred cCCCC--CccCC-eEEECCC-ccEEEeCCccCceEEeCCEEE
Confidence 4566 88999 9999998 999999998 59999999986
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=6e-34 Score=295.55 Aligned_cols=202 Identities=14% Similarity=0.177 Sum_probs=174.9
Q ss_pred CCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCH
Q psy8155 372 VQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSA 451 (617)
Q Consensus 372 ~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~ 451 (617)
.+++|||+|||||||+||||++||+++.+.+.+....++++++|++++++|++|+.++ ..++.+++.|+++++.++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~-- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT-- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc--
Confidence 3789999999999999999999999999999999999999999999999999999996 6788899999999998642
Q ss_pred HHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCHHHHHHHHHHcCccccccccccccc-----
Q psy8155 452 SNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEG----- 524 (617)
Q Consensus 452 ~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~----- 524 (617)
...++.|+++++|++.++|++++.|++.... ..++++||.++ |+++++++.++|.+ ++. +++|.||+||+
T Consensus 113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~-~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 113 ANPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISD-LAM-PVYQSYGMTETVSHVA 189 (358)
T ss_dssp SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHT-CSS-CEEEEEECGGGSSEEE
T ss_pred ccHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheecccc-cCc-eEEeccccccccceee
Confidence 2346678999999999999999999987653 44788999887 88899999999876 454 79999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy8155 525 -------------------------------------------------------------------------------- 524 (617)
Q Consensus 525 -------------------------------------------------------------------------------- 524 (617)
T Consensus 190 ~~~~~~~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g~~~~GR~dd~Ik~~G~~v~p~eIE~~l 269 (358)
T 4gs5_A 190 LKALNGPEASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHGNAFQWIGRADNVINSGGVKIVLDQIDQRI 269 (358)
T ss_dssp EEECSSTTCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEEEEEEECSSEEEEEEEGGGEEEETTEEEEHHHHHHHH
T ss_pred cccccccccceeeccCCCeEEEecCcCceEEecccccCcceecCCccccccCceEEcccccCeEEECCEEECHHHHHHHH
Confidence
Q ss_pred ---------------------------ceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccchhhhHHHh
Q psy8155 525 ---------------------------MAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQ 577 (617)
Q Consensus 525 ---------------------------~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~ 577 (617)
.+++.........++++++++++||.||+|..+.+++++|+|++||+||++|.
T Consensus 270 ~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~ 349 (358)
T 4gs5_A 270 AAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATF 349 (358)
T ss_dssp HHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHH
T ss_pred HHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHH
Confidence 12222333344567899999999999999999999999999999999999998
Q ss_pred hc
Q psy8155 578 KE 579 (617)
Q Consensus 578 ~~ 579 (617)
+.
T Consensus 350 ~~ 351 (358)
T 4gs5_A 350 QK 351 (358)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.97 E-value=3.7e-32 Score=290.53 Aligned_cols=235 Identities=15% Similarity=0.128 Sum_probs=178.4
Q ss_pred CCCC-CCeEEEEEccCCCCCCceEEechHHHHHHHHHHH---HHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEE
Q psy8155 369 RVGV-QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 369 ~~~~-~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lv 444 (617)
...+ ++++||+|||||||.||||+++|+++.+...+.. ..++++++|++++..|++|..+.+..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 8999999999999999999999999988776653 34589999999999999776766677888999999999
Q ss_pred EcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCC--ccCceeeee--ccCCCHHHHHHHHHHcCccccccccc
Q psy8155 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPED--KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYG 520 (617)
Q Consensus 445 i~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG 520 (617)
+.+..++..+++.|+++++|++.++|+++..|++....... .+++||.++ ||++++++.++|.+.++. +++|.||
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG 239 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNV-KAYNSFG 239 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTS-EEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCc-cEEecCc
Confidence 99889999999999999999999999999999876433222 367898876 889999999999999976 7999999
Q ss_pred ccccceE-Ee-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEee-c----ccCCccchhhhHHHhhcCC--CCCccCCeeE
Q psy8155 521 ATEGMAA-IL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLR-E----VEMTGTYKLKKLDLQKEGF--DPNVIQDRLY 591 (617)
Q Consensus 521 ~TE~~~~-v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~-~----lP~t~~GK~dr~~L~~~g~--~~~~TGD~lg 591 (617)
+||+... +. ...... ...+|. --..+.+++ + +|....|.+--+.+.++.| .||+||| +|
T Consensus 240 ~TE~~~~~~~~~~~~~~---------g~~~~~--~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~~~~~~~y~TGD-l~ 307 (436)
T 3qov_A 240 MTEMNGPGVAFECQEQN---------GMHFWE--DCYLVEIIDPETGEPVPEGEIGELVLTTLDREMMPLIRYRTRD-LT 307 (436)
T ss_dssp EGGGTEEEEEEECTTCS---------SEEECT--TTEEEEEECTTTCSBCSTTCCEEEEEEESSCCSSCCCSEEEEE-EE
T ss_pred chhhcCCeeEEecCCCC---------eeEEcc--CceEEEEEECCCCCCCCCCCceEEEEeccCcCCceEEEEEcCC-EE
Confidence 9999543 33 111110 011110 012344444 1 3334445442222222222 3388999 99
Q ss_pred EEeCCCc------e---eeCCHHHHHHHhcCCcCC
Q psy8155 592 YLSSKGV------Y---EELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 592 ~~d~d~G------~---l~i~GR~~d~I~~~G~~v 617 (617)
++|++ | + ++|+||.||+||++|+||
T Consensus 308 ~~~~~-gc~cG~~~~~il~i~GR~dd~ik~~G~~v 341 (436)
T 3qov_A 308 RILPG-KCPCGRTHLRIDRIKGRSDDMFIIKGVNI 341 (436)
T ss_dssp CEECS-CCTTCCCSCEECCCCCBSSSCEEETTEEE
T ss_pred EEcCC-CCCCCCCccccCcccCccCCEEEECCEEE
Confidence 99997 8 6 799999999999999986
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.97 E-value=5.9e-32 Score=289.56 Aligned_cols=234 Identities=15% Similarity=0.097 Sum_probs=175.4
Q ss_pred CCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHH---HHhCCCCCCEEEEcCcch-hhHHHHHHHHHHhHcCcEEE
Q psy8155 369 RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPLY-HTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 369 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~-~~~~~~~~~~~~L~~G~~lv 444 (617)
...++++++|+|||||||+||||+++|+++.+...+.. ..++++++|++++..|++ |..+ ...++.++..|++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~~~~~G~~~~ 166 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGG-LGIHYGAERLGCMVV 166 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHH-HHHHHHHHHHTCEEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccH-HHHHHHHHHcCCEEE
Confidence 44678999999999999999999999999987665543 367899999999999984 5555 466788999999999
Q ss_pred EcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCC--ccCceeeee--ccCCCHHHHHHHHHHcCccccccccc
Q psy8155 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPED--KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYG 520 (617)
Q Consensus 445 i~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG 520 (617)
+.+..+++.+++.|+++++|++.++|+++..|++....... .++++|.++ ||++++++.++|.+.++. +++|.||
T Consensus 167 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG 245 (443)
T 2y4o_A 167 PMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGI-DALDIYG 245 (443)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTC-EEEEEEE
T ss_pred ECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCc-CEEeccC
Confidence 99888999999999999999999999999998875332222 247888776 889999999999999976 7999999
Q ss_pred ccccceE-Ee--CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----ccCCccchhhhHHHhhcCC--CCCccCCee
Q psy8155 521 ATEGMAA-IL--DINKSLDVSAVSEGIKKALPSYARPLFIRCLRE-----VEMTGTYKLKKLDLQKEGF--DPNVIQDRL 590 (617)
Q Consensus 521 ~TE~~~~-v~--~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----lP~t~~GK~dr~~L~~~g~--~~~~TGD~l 590 (617)
+||+... +. .+... ....+|. -...+.+++. +|....|.+--+.+.++.| .||+||| +
T Consensus 246 ~TE~~g~~~~~~~~~~~---------~g~~~~~--~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t~~~~p~~~y~TGD-l 313 (443)
T 2y4o_A 246 LSEVMGPGVACECVETK---------DGPVIWE--DHFYPEIIDPVTGEVLPDGSQGELVFTSLTKEAMPVIRYRTRD-L 313 (443)
T ss_dssp ETTTTEEEEEEECTTTC---------CSEEECT--TTEEEEEECTTTCCBCCTTCCEEEEEEESSCSSSCCSSEEEEE-E
T ss_pred chhhcCCeEEeccCCCC---------CceEEcc--CCeEEEEEcCCCCCCCCCCCceEEEEeCCCcccChhheeecCC-E
Confidence 9997432 22 21111 0111110 0123445541 3433345442222333222 3488999 9
Q ss_pred EEEeCCC-cee-----eCCHHHHHHHhcCCcCC
Q psy8155 591 YYLSSKG-VYE-----ELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 591 g~~d~d~-G~l-----~i~GR~~d~I~~~G~~v 617 (617)
|++|+ + |++ +|+||.||+||++|+||
T Consensus 314 ~~~~~-~cG~~~~~l~~i~GR~~d~i~~~G~~v 345 (443)
T 2y4o_A 314 TALLP-PTARAMRRLAKITGRSDDMLIVRGVNV 345 (443)
T ss_dssp ECEEC-CSSSSSCEECCCCEESSCCEEETTEEE
T ss_pred EEEcC-CCCCCccccCccccccCCeEEECCEEE
Confidence 99999 7 887 99999999999999986
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.97 E-value=7.7e-31 Score=280.37 Aligned_cols=234 Identities=13% Similarity=0.039 Sum_probs=174.9
Q ss_pred CCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHH---HHhCCCCCCEEEEcCcc-hhhHHHHHHHHHHhHcCcEEE
Q psy8155 369 RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPL-YHTAGGAMCIGQALIFGCCVV 444 (617)
Q Consensus 369 ~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~-~~~~~~~~~~~~~L~~G~~lv 444 (617)
...++++++|+|||||||.||||+++|+++.+...+.. ..++++++|++++..|+ +|..++ ..++.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEE
Confidence 34678999999999999999999999999987765443 36789999999999998 566554 56788999999999
Q ss_pred EcCCCCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCC--ccCceeeee--ccCCCHHHHHHHHHHcCccccccccc
Q psy8155 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPED--KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYG 520 (617)
Q Consensus 445 i~~~~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~--~l~~lr~v~--Ge~l~~~~~~~~~~~~~~~~l~n~YG 520 (617)
+.+..+++.+++.|+++++|++.++|+++..|++....... .++++|.++ ||++++++.++|.+.++. +++|.||
T Consensus 165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG 243 (437)
T 2y27_A 165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGI-DAVDIYG 243 (437)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTS-EEEEEEE
T ss_pred eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCc-CEEecCC
Confidence 98888999999999999999999999999999875332222 247888776 888999999999999976 7999999
Q ss_pred ccccceE-EeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeec-----ccCCccchhhhHHHhh----cCCCCCccCCee
Q psy8155 521 ATEGMAA-ILDINKSLDVSAVSEGIKKALPSYARPLFIRCLRE-----VEMTGTYKLKKLDLQK----EGFDPNVIQDRL 590 (617)
Q Consensus 521 ~TE~~~~-v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~-----lP~t~~GK~dr~~L~~----~g~~~~~TGD~l 590 (617)
+||+... +........ ....+|. -...+.+++. +|....|.+--+.+.+ .+| |+||| +
T Consensus 244 ~TE~~g~~~~~~~~~~~-------~g~~~~~--~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t~~~~~~~~--y~TGD-l 311 (437)
T 2y27_A 244 LSEVMGPGVASECVETK-------DGPTIWE--DHFYPEIIDPETGEVLPDGELGELVFTSLTKEALPIIR--YRTRD-L 311 (437)
T ss_dssp ETTTTEEEEEECCTTTC-------SSCEECT--TTEEEEEECTTTCCBCCTTCCEEEEEEESSCSSSCCCS--EEEEE-E
T ss_pred chhhcCCeeEEecCCCC-------CceeEcc--CceEEEEEcCCCCCCCCCCCccEEEEecCCcCCchhhe--eecCC-E
Confidence 9998432 331111100 0011110 0123444441 3333345442222222 345 88999 9
Q ss_pred EEEeC-CCcee-----eCCHHHHHHHhcCCcCC
Q psy8155 591 YYLSS-KGVYE-----ELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 591 g~~d~-d~G~l-----~i~GR~~d~I~~~G~~v 617 (617)
|++|+ + |++ +|+||.||+||++|+||
T Consensus 312 ~~~~~~~-G~~~~~i~~i~GR~~d~i~~~G~~v 343 (437)
T 2y27_A 312 TRLLPGT-ARTMRRMEKITGRSDDMMIVRGVNV 343 (437)
T ss_dssp ECEECCS-SSSSCEECCCCEEGGGCEEETTEEE
T ss_pred EEEeCCC-CCCccccCccccccCCeEEECCeEE
Confidence 99999 6 986 99999999999999986
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.92 E-value=1.1e-25 Score=234.76 Aligned_cols=235 Identities=14% Similarity=0.059 Sum_probs=161.3
Q ss_pred CCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHH---HHhCCCCCCEEEEcCcc-hhhHHHHHHHHHHhHcCcEEEE
Q psy8155 370 VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPL-YHTAGGAMCIGQALIFGCCVVI 445 (617)
Q Consensus 370 ~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~-~~~~~~~~~~~~~L~~G~~lvi 445 (617)
..++++++|+|||||||+||||+++|+++.+...+.. ..+++.++|++++.+|+ +|..++ ...+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EEE
Confidence 4678999999999999999999999999999888654 45677899999999999 898886 55666799999 777
Q ss_pred cCCCCHH-----------------------HHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCCccCceeeee--ccCCCH
Q psy8155 446 RKKFSAS-----------------------NYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRP 500 (617)
Q Consensus 446 ~~~~d~~-----------------------~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~l~~lr~v~--Ge~l~~ 500 (617)
...+||. .+++.|+++++|++.++|+++..|++........+++||.++ ||++++
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 7778888 888899999999999999999999877433334567898876 889999
Q ss_pred HHHHHHH-HHcCcccccccccccccceEEeCCCCCCCHHHHHHHHhhcCC-CCCcC-cEEEEeec-----ccCCccchhh
Q psy8155 501 QIWSEFV-DRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALP-SYARP-LFIRCLRE-----VEMTGTYKLK 572 (617)
Q Consensus 501 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~v~~~~~~~~~~~l~~~l~~~Lp-~~~~P-~~~~~~~~-----lP~t~~GK~d 572 (617)
++.++|. +.||.++++|.||+||+.......... .++..+. ....| ..+.+++. +|....|.+-
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~~--------~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~ 317 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLIT--------SESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVI 317 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCBC--------TTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceeccccc--------cCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEE
Confidence 9999999 899666899999999987554421110 0111100 00022 24555553 3445556654
Q ss_pred hHHHhhcCC-CCCccCCeeEEEeCC-Cc-------eeeCCHHHHHHHhcCCc
Q psy8155 573 KLDLQKEGF-DPNVIQDRLYYLSSK-GV-------YEELTPEVYKDLVQGNI 615 (617)
Q Consensus 573 r~~L~~~g~-~~~~TGD~lg~~d~d-~G-------~l~i~GR~~d~I~~~G~ 615 (617)
-+.|.++.+ ..|+||| ++++.+. +| .+..++|.+++.|+.|+
T Consensus 318 vt~l~~~~~l~ry~tgD-~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 318 VTHLSPWAFYPRVAERD-TAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEETTEEEEEEEEEE-EEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEcCcccccccccCCc-eEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 344443333 3367999 9888765 22 45678899999999885
No 37
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=99.56 E-value=1.7e-16 Score=173.09 Aligned_cols=153 Identities=12% Similarity=0.081 Sum_probs=127.6
Q ss_pred EEEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-----ccCCCCc
Q psy8155 29 IIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF-----LSDPPKN 103 (617)
Q Consensus 29 ~~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf-----~~~~~r~ 103 (617)
..+.|+++|+|++||...+. +++||+|+||+|+|++++++.+|.++|+++++...++++||++|| .+++.|+
T Consensus 345 ~~~~dv~~g~~~~gR~~~~~---~~~vG~f~n~lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~i~~~l~~~r~ 421 (520)
T 2jgp_A 345 AGQEDIIVGTPITGRSHADL---EPIVGMFVNTLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEELVEKLAIARD 421 (520)
T ss_dssp HTCSCEEEEEEECCCCSGGG---TTCCSCCCEEEEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHHHHHHTCCCCC
T ss_pred cCCCCeEEEeccCCCCchhh---hccEEeeeeeeeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHhcCCCC
Confidence 45679999999999998676 999999999999999999999999999999999999999999999 6778888
Q ss_pred cccCcCCcccc----------CCCCccccc-cCCCC--Cccccccccccccc-----chhhhhhhhhccchhhhcccEEE
Q psy8155 104 TTYNKKGLCSR----------CEPGVFIGK-IVPSN--PARAYLGYVNEKDS-----AKKIFTDVFEIGDSAFLSGDLLV 165 (617)
Q Consensus 104 ~~~~~l~~~~~----------~~~gl~~~~-~~~~~--~~~~dl~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~ 165 (617)
...+|+|++.. ..+|+.+.. ..... .++|||++.+.+.+ ..+|.+++|+.++++.+..+|..
T Consensus 422 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~ 501 (520)
T 2jgp_A 422 LSRNPLFDTVFTFQNSTEEVMTLPECTLAPFMTDETGQHAKFDLTFSATEEREEMTIGVEYSTSLFTRETMERFSRHFLT 501 (520)
T ss_dssp TTSCSSCSEEEEEECCCCSCCCCSSEEEEECSSCSSCSBCSSSEEEEEEECSSCEEEEEEEETTTCCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEEecCCCccccCCCceeEEeecCCCCcceeeeeEEEEEECCCeEEEEEEEChhhCCHHHHHHHHHHHHH
Confidence 88888888611 114444444 22333 78999999987654 35899999999999999999998
Q ss_pred EeccccceeecccCCCcccc
Q psy8155 166 MDKWGYLYFKDRTGDTFPAL 185 (617)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l 185 (617)
++ ..++.+|+.++.+++++
T Consensus 502 lL-~~l~~~p~~~l~~l~ll 520 (520)
T 2jgp_A 502 IA-ASIVQNPHIRLGEIDML 520 (520)
T ss_dssp HH-HHHHHCTTCBGGGCCCC
T ss_pred HH-HHHHhCccCchhhcCCC
Confidence 87 66778888888887764
No 38
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=99.41 E-value=2.1e-15 Score=163.23 Aligned_cols=166 Identities=7% Similarity=-0.161 Sum_probs=110.2
Q ss_pred EEEeccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccc--cccccccccchhhhhhhhhhcCCccc----c----c
Q psy8155 29 IIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARA--YLGYVNEKDSAKKIVTDVFEIGDSAF----L----S 98 (617)
Q Consensus 29 ~~~~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~--~~~f~~ll~~v~~~~~~a~~hqd~Pf----~----~ 98 (617)
..+.|+++|+|++||...+. +++||+|+||+|+|+++++ +.+|.++++++++...++++| ++|| . +
T Consensus 270 ~g~~dv~~g~~~~gR~~~~~---~~~vG~f~n~lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~i~~~~~~l 345 (493)
T 4hvm_A 270 TGKDSLYLSTEVDLRDHLQL---GSVVGPLTDRVVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHDVVDLAVDL 345 (493)
T ss_dssp ---CEEEEEEEEEHHHHTTC---CSBCSCCEEEEEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHT
T ss_pred CCCCCEEEEeeccCCCCcch---hcCeEeeeceeEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHhhh
Confidence 34459999999999987666 9999999999999999999 999999999999999999999 9999 3 5
Q ss_pred CCCCccccCcCCccccC------------------CCCccccccCC---------------CCCcccc---ccccccccc
Q psy8155 99 DPPKNTTYNKKGLCSRC------------------EPGVFIGKIVP---------------SNPARAY---LGYVNEKDS 142 (617)
Q Consensus 99 ~~~r~~~~~~l~~~~~~------------------~~gl~~~~~~~---------------~~~~~~d---l~~~~~~~~ 142 (617)
++.++...+|+|++... .+|+.+..... .+.++|| |.+.+.+.+
T Consensus 346 ~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~ 425 (493)
T 4hvm_A 346 GVVTPPRVAARWDVAVHLCRNAPSSSLTRGERTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELG 425 (493)
T ss_dssp TSCBTTBTTGGGCEEECC--------------------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEET
T ss_pred CcccCCCCCcceeEEEEEEecCCccccccccccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeC
Confidence 67788888888886211 12343332111 2346788 887776654
Q ss_pred -----chhhhhhhhhccchhhhcccEEEEeccccceeecccCCCcccccHHHHHHHHHHHHHH
Q psy8155 143 -----AKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAA 200 (617)
Q Consensus 143 -----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 200 (617)
..+|.+++| .++++.+..+|..++ ..++.+|+.++.+++++++.++......++..
T Consensus 426 ~~l~~~~~y~~~l~-~~~i~~l~~~~~~~L-~~~~~~p~~~l~~l~ll~~~~~~~~~~~~~~~ 486 (493)
T 4hvm_A 426 EDMVIVLDQRRTHP-AGGGSALLDGLDAAM-AQAVADPSAPLPHSTVDTTTQSTVDKDTVDRN 486 (493)
T ss_dssp TEEEEEEEECC--------CHHHHHHHHHH-HHHHHCTTSBCCC-------------------
T ss_pred CeEEEEEEEccccC-HHHHHHHHHHHHHHH-HHHHhCCCCccccCCCCCHHHHHHHhhhhccc
Confidence 358999999 889999999999888 77788999999999999999988766655443
No 39
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=99.29 E-value=3.5e-14 Score=151.00 Aligned_cols=144 Identities=8% Similarity=-0.042 Sum_probs=108.6
Q ss_pred eccCCCccccCCCCCcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc-----ccCCCCcccc
Q psy8155 32 VDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF-----LSDPPKNTTY 106 (617)
Q Consensus 32 ~D~~~G~pva~R~~~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf-----~~~~~r~~~~ 106 (617)
.|+++|+|++||...+. +++||+|+|++|+|++++++.+|.++++++++...++++||++|| .++..+ ..
T Consensus 252 ~dv~ig~~~~~R~~~~~---~~~vG~f~n~lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~i~~~l~~~~--~~ 326 (436)
T 1l5a_A 252 DAPWLWLPFMNRWGSVA---ANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNA--EQ 326 (436)
T ss_dssp TCCEEEEEECCCTTSGG---GGSCSCCCEEEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCT--TC
T ss_pred CceEEeeecccCCChHH---hcCcceEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHHhcccc--cC
Confidence 79999999999998777 999999999999999999999999999999999999999999999 333332 23
Q ss_pred CcCCcc--------ccCCCCccccc-cCCCCCccccccccccc-cc-----chhhhhhhhhccchhhhcccEEEEecccc
Q psy8155 107 NKKGLC--------SRCEPGVFIGK-IVPSNPARAYLGYVNEK-DS-----AKKIFTDVFEIGDSAFLSGDLLVMDKWGY 171 (617)
Q Consensus 107 ~~l~~~--------~~~~~gl~~~~-~~~~~~~~~dl~~~~~~-~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 171 (617)
+|+|++ ....+|+.+.. ......++ ||.+.+.+ .+ ..+|.+++|+.++++.+..+|..++ ..+
T Consensus 327 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~l~v~~~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l-~~l 404 (436)
T 1l5a_A 327 SYFMSPFINILPFESPHFADCQTELKVLASGSAE-GINFTFRGSPQHELCLDITADLASYPQSHWQSHCERFPRFF-EQL 404 (436)
T ss_dssp CBCCCSEEEEECCCCCCCTTCEEEEEEEEECCCC-SEEEEEEECTTSCEEEEEEEETTTSCHHHHHHHHHHHHHHH-HHH
T ss_pred CCccceEEEeeccCccccCCCeeEEEecCCCCcc-ceEEEEEecCCCcEEEEEEeChhhCCHHHHHHHHHHHHHHH-HHH
Confidence 444443 11224444433 22233444 88888763 22 3489999999999999999888776 555
Q ss_pred cee---ecccCCCc
Q psy8155 172 LYF---KDRTGDTF 182 (617)
Q Consensus 172 ~~~---~~~~~~~~ 182 (617)
+.+ |+.++.++
T Consensus 405 ~~~~~~p~~~l~~l 418 (436)
T 1l5a_A 405 LARFQQVEQDVARL 418 (436)
T ss_dssp HHHHHTTTTCHHHH
T ss_pred HhccCCCcccHHHH
Confidence 566 66666654
No 40
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=98.84 E-value=1e-10 Score=125.36 Aligned_cols=138 Identities=8% Similarity=-0.055 Sum_probs=96.5
Q ss_pred EEEeccCCCccccCCCCC-cccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCccc----ccCC---
Q psy8155 29 IIRVDPVTSEPIRNKKGL-CTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF----LSDP--- 100 (617)
Q Consensus 29 ~~~~D~~~G~pva~R~~~-~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~Pf----~~~~--- 100 (617)
..+.|+++|+|++||... +.++.+++||+|+|++|+|++++++.+|.+++++|++.+.++ .||++|| .+..
T Consensus 276 ~~~~dv~ig~~~~gR~~~~~~~~~~~~vG~f~n~lplr~~~~~~~~~~~~l~~v~~~~~~~-~~~~~~~~~~~~l~~~~~ 354 (466)
T 2xhg_A 276 SKLAQIVIHLEGHGREDIIEQANVARTVGWFTSQYPVLLDLKQTAPLSDYIKLTKENMRKI-PRKGIGYDILKHVTLPEN 354 (466)
T ss_dssp HCCSEEEEEEEECCCCSCSTTCCCTTCCSCCCEEEEEEEECSCCCSHHHHHHHHHHHHHHS-GGGGTHHHHHHHTSCGGG
T ss_pred hCCCceEEEecCCCCCccccCCCccccccceeeeccEEEecCCCCCHHHHHHHHHHHHHhC-ccCCcccceeeecccccc
Confidence 456799999999999852 112339999999999999999999999999999999998775 9999999 2222
Q ss_pred --CCc------cccCcCCcccc--CCCCccccccC--------------CCCCccccccccccccc-----chhhhhhhh
Q psy8155 101 --PKN------TTYNKKGLCSR--CEPGVFIGKIV--------------PSNPARAYLGYVNEKDS-----AKKIFTDVF 151 (617)
Q Consensus 101 --~r~------~~~~~l~~~~~--~~~gl~~~~~~--------------~~~~~~~dl~~~~~~~~-----~~~~~~~~f 151 (617)
.+. ++|+.+...+. ..+++...... +...++|||++.+.+.+ ..+|.+++|
T Consensus 355 ~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~~~~ 434 (466)
T 2xhg_A 355 RGSLSFRVQPEVTFNYLGQFDADMRTELFTRSPYSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSSEQY 434 (466)
T ss_dssp STTCCCCCCCSEEEEEEEECCTTCSSSSCEECTTCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEETTTS
T ss_pred cccccccCCCeEEEeecCcccccccCCceecccccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEEChhhC
Confidence 122 22332211111 11333322210 12334889988875433 358999999
Q ss_pred hccchhhhcccEEEEe
Q psy8155 152 EIGDSAFLSGDLLVMD 167 (617)
Q Consensus 152 ~~~~~~~~~~~~~~~~ 167 (617)
+.++++.+..+|..++
T Consensus 435 ~~~~i~~l~~~~~~~L 450 (466)
T 2xhg_A 435 REESIQQLSQSYQKHL 450 (466)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999988877555
No 41
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=98.51 E-value=6.7e-09 Score=109.46 Aligned_cols=58 Identities=9% Similarity=-0.140 Sum_probs=52.3
Q ss_pred EeccCCCccccCCCC-------CcccCCCCCcceeEEEecCCCCccccccccccccchhhhhhhhhhcCCcc
Q psy8155 31 RVDPVTSEPIRNKKG-------LCTRCEPGEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSA 95 (617)
Q Consensus 31 ~~D~~~G~pva~R~~-------~~~~~~~~~iG~fvNtl~lr~~~~~~~~f~~ll~~v~~~~~~a~~hqd~P 95 (617)
+.|+++|+|++||.. .+. +++||+|+|+||+|. +.+|.++++++++.+.++++||++|
T Consensus 257 ~~~v~~g~~~~~R~~~~~~~~~~~~---~~~vG~f~n~lp~~~----~~~~~~~l~~v~~~~~~~~~~~~~~ 321 (422)
T 1q9j_A 257 HVPIPYVYPVDLRFVLAPPVAPTEA---TNLLGAASYLAEIGP----NTDIVDLASDIVATLRADLANGVIQ 321 (422)
T ss_dssp SCCEEEEEEEETTTTSSSCCCTTTB---SCCEEEEEEEECCCS----SCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CceEEEeeeeecccccCCCCChhhh---hhhheeeeeeeeccC----CCCHHHHHHHHHHHHHHHHhcCeee
Confidence 458999999999986 556 999999999999876 4689999999999999999999995
No 42
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=98.35 E-value=3.4e-06 Score=91.74 Aligned_cols=314 Identities=12% Similarity=-0.008 Sum_probs=162.8
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHH--HHH-HHHHHHhcCCeEEec
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE--FVC-LWLGLSKLGVITALI 288 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~--~iv-a~lA~~~aG~~~vpl 288 (617)
.|+.+|++.. +-.+|.+.+...+..... ..++.+++++...+|-+.. +.. .+++.+..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 5677777653 245899988766655443 3478899999998886533 333 578889999998876
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHHHHHHhcC---CCeEEEEeCCCCCCCCCCCCCcCCcchhhccCCCCCCC
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG---SNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPS 365 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (617)
+. ...+++...+++.++.++...+.....+........ ...+.+......-. ......+..
T Consensus 257 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~-------~~~~~~~~~-------- 320 (539)
T 1mdb_A 257 PS-PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFS-------AEAARRVKA-------- 320 (539)
T ss_dssp SS-SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCC-------HHHHTTHHH--------
T ss_pred CC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCC-------HHHHHHHHH--------
Confidence 54 677889999999999999998877766544322111 12233333221100 000000000
Q ss_pred CCCCCCCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhC--CCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEE
Q psy8155 366 LSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG--FRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443 (617)
Q Consensus 366 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~l 443 (617)
.. .-. ++-.-|+|-. ++..+....... ......| +.....+...-+ .+- .. +--.=|.+
T Consensus 321 ---~~--~~~--~~~~YG~TE~--~~~~~~~~~~~~--~~~~~~G~p~~~~~~~~i~d~----~~~---~~-~~g~~GEl 381 (539)
T 1mdb_A 321 ---VF--GCT--LQQVFGMAEG--LVNYTRLDDPEE--IIVNTQGKPMSPYDESRVWDD----HDR---DV-KPGETGHL 381 (539)
T ss_dssp ---HT--CSE--EEEEEECTTS--CEEECCTTSCHH--HHHHCCCEESSTTCEEEEECT----TSC---BC-CTTCCEEE
T ss_pred ---Hh--CCc--EEEEEcCCCC--cccccCCCCcHH--hcCCCCCcccCCCceEEEECC----CCC---CC-cCCCcceE
Confidence 00 011 2222255542 222221100000 0001111 111111111000 000 00 00011444
Q ss_pred EEcCC-------CCHHHHHHHHHHcCCcEEeecHHHHHHHHcCCCCCCC----ccCceeeeeccCCCHHHHHHHHHHcCc
Q psy8155 444 VIRKK-------FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPED----KAHNVRLMFGNGLRPQIWSEFVDRFRI 512 (617)
Q Consensus 444 vi~~~-------~d~~~l~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~----~l~~lr~v~Ge~l~~~~~~~~~~~~~~ 512 (617)
++... .+++.-.+.+...+ ++-|-.+.. + .+.... +...+-.+.|+.+.+..++.....+|.
T Consensus 382 ~v~g~~v~~GY~~~~~~t~~~f~~~g---~~~TGDlg~-~---~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~ 454 (539)
T 1mdb_A 382 LTRGPYTIRGYYKAEEHNAASFTEDG---FYRTGDIVR-L---TRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454 (539)
T ss_dssp EEECTTSCSSCTTCHHHHHHHBCTTS---CEEEEEEEE-E---CTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTT
T ss_pred EeeCcccchhhcCChhhhhhhccCCC---CeecCceEE-E---CCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCC
Confidence 44321 14443333221111 111111100 0 000000 001111122888999999998887775
Q ss_pred cccccccccc-----cc-ceEEeCCCCCCCHHHHHHHHhhc-CCCCCcCcEEEEeecccCCccchhhhHHHhhc
Q psy8155 513 AQIGEFYGAT-----EG-MAAILDINKSLDVSAVSEGIKKA-LPSYARPLFIRCLREVEMTGTYKLKKLDLQKE 579 (617)
Q Consensus 513 ~~l~n~YG~T-----E~-~~~v~~~~~~~~~~~l~~~l~~~-Lp~~~~P~~~~~~~~lP~t~~GK~dr~~L~~~ 579 (617)
..=.-.+|.. |. .++++..+...+.++++++++++ ||.||+|..+.+++++|+|++||+||++|++.
T Consensus 455 V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 528 (539)
T 1mdb_A 455 VHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREA 528 (539)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHH
T ss_pred cceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHH
Confidence 4222233321 22 44555445567889999999998 99999999999999999999999999999853
No 43
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=98.27 E-value=4e-06 Score=92.79 Aligned_cols=97 Identities=9% Similarity=-0.028 Sum_probs=71.1
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCH--HHHH-HHHHHHhcCCeEEec
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP--EFVC-LWLGLSKLGVITALI 288 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~--~~iv-a~lA~~~aG~~~vpl 288 (617)
.|+.+|++.. +-.+|.+.+...+...... .++.+++++..+++-+. ++.. .+++.+..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 4677877642 3458998887666555443 47889999999988543 3333 478888999998876
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
+. .....+...+++.++.++...+.....+..
T Consensus 259 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 290 (617)
T 3rg2_A 259 AD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQ 290 (617)
T ss_dssp SS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHH
Confidence 55 567778889999999999998877665544
No 44
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=98.13 E-value=6.3e-06 Score=89.78 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=72.0
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHHHH---HHHHHHhcCCeEEec
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVC---LWLGLSKLGVITALI 288 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv---a~lA~~~aG~~~vpl 288 (617)
.|+.+|++.. +-.+|.+.+...+...+. ..++.+++++...+|-+..+-. .+++.+..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 4677887653 245899988776665544 4588999999999886544332 478889999998876
Q ss_pred CCCCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 289 dp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
+. ...+++...+++.++..+...+.....+..
T Consensus 266 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 266 PN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp SS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHCCCEEEechHHHHHHHh
Confidence 54 567788889999999999998876655443
No 45
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=97.90 E-value=6.9e-06 Score=88.57 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=53.5
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-C-CCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-D-INKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~-~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t 566 (617)
|+.+.+..++......|.+.=.-.+|.. |. .++++ . +....+.++++++++++||.||+|..+.+++++|+|
T Consensus 413 G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t 492 (505)
T 3nyq_A 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRN 492 (505)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-
T ss_pred CEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCC
Confidence 8889999999988877754323333322 22 44454 2 244667889999999999999999999999999999
Q ss_pred ccchhhhHHHhhc
Q psy8155 567 GTYKLKKLDLQKE 579 (617)
Q Consensus 567 ~~GK~dr~~L~~~ 579 (617)
++||+||++|+++
T Consensus 493 ~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 493 DMGKIMKRALNRD 505 (505)
T ss_dssp -------------
T ss_pred CCcCeeHHhhccC
Confidence 9999999999864
No 46
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=97.87 E-value=9.3e-06 Score=87.83 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=67.5
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCcc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGT 568 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 568 (617)
|+.+.+..++.....+|...=.-.+|.. |. .++++.++...+.+++++++.++||.||+|..+.+++++|+|++
T Consensus 420 G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~ 499 (517)
T 3r44_A 420 GENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPT 499 (517)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTT
T ss_pred CEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCC
Confidence 8889999999988877754222233321 22 33444566678889999999999999999999999999999999
Q ss_pred chhhhHHHhhc
Q psy8155 569 YKLKKLDLQKE 579 (617)
Q Consensus 569 GK~dr~~L~~~ 579 (617)
||+||++|++.
T Consensus 500 GKi~R~~L~~~ 510 (517)
T 3r44_A 500 GKILKTVLREQ 510 (517)
T ss_dssp CCBCHHHHHHH
T ss_pred cCccHHHHHHH
Confidence 99999999875
No 47
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=97.87 E-value=1.4e-05 Score=86.11 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=68.1
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....++...=.-.+|. .|. .++++ .++...+.+++++++.++||.||+|..+.+++++|+|+
T Consensus 406 G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 485 (503)
T 4fuq_A 406 GFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNT 485 (503)
T ss_dssp TEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCT
T ss_pred CEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCc
Confidence 888999999998888775422222222 122 33444 55667888999999999999999999999999999999
Q ss_pred cchhhhHHHhhcCC
Q psy8155 568 TYKLKKLDLQKEGF 581 (617)
Q Consensus 568 ~GK~dr~~L~~~g~ 581 (617)
+||+||++|++.-.
T Consensus 486 ~GKi~R~~L~~~~~ 499 (503)
T 4fuq_A 486 MGKVQKNVLRETYK 499 (503)
T ss_dssp TSCBCHHHHHHHTT
T ss_pred ccceeHHHHHHHHH
Confidence 99999999987643
No 48
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=97.84 E-value=1.5e-05 Score=86.64 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=67.5
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....+|...=.-.+|. .|. .++++ .++...+.+++++++.++||.||+|..+.+++++|+|+
T Consensus 441 G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~ 520 (536)
T 3ni2_A 441 GFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAP 520 (536)
T ss_dssp TEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCT
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCC
Confidence 888999999998888776422223332 122 34444 55667788999999999999999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||+||++|++.
T Consensus 521 ~GKi~R~~L~~~ 532 (536)
T 3ni2_A 521 SGKILRKNLKEK 532 (536)
T ss_dssp TSCBCHHHHHTC
T ss_pred CCCeeHHHHHHH
Confidence 999999999864
No 49
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=97.77 E-value=1.9e-05 Score=84.99 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=66.7
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhh-cCCCCCcCcEEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKK-ALPSYARPLFIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~-~Lp~~~~P~~~~~~~~lP~t 566 (617)
|+.+.+..++.....+|...=.-.+|.. |. .++++ .++...+.+++++++.+ +||.||+|..+.+++++|+|
T Consensus 409 G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t 488 (504)
T 1t5h_X 409 GENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKN 488 (504)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBC
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCC
Confidence 8889999999988877754222333322 22 34444 44556788999999998 99999999999999999999
Q ss_pred ccchhhhHHHhhc
Q psy8155 567 GTYKLKKLDLQKE 579 (617)
Q Consensus 567 ~~GK~dr~~L~~~ 579 (617)
++||++|++|++.
T Consensus 489 ~~GKi~r~~L~~~ 501 (504)
T 1t5h_X 489 ALNKVLRRQLVQQ 501 (504)
T ss_dssp TTSCBCHHHHHHH
T ss_pred CCCCEeHHHHHHH
Confidence 9999999999864
No 50
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=97.74 E-value=1.3e-05 Score=87.35 Aligned_cols=96 Identities=13% Similarity=-0.008 Sum_probs=72.1
Q ss_pred CceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCCeEEecCCCC
Q psy8155 223 NKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF-VCLWLGLSKLGVITALINHNL 292 (617)
Q Consensus 223 ~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~-iva~lA~~~aG~~~vpldp~~ 292 (617)
+.+|++.. +-.+|.+.+...+..++.. .++.+++++..++|-.-.+ +..++..+..|+..+.++ .+
T Consensus 180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~ 255 (549)
T 3g7s_A 180 EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MF 255 (549)
T ss_dssp TSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SC
T ss_pred CCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CC
Confidence 67776542 3458999988777666554 4788999999888864432 333677788899988876 56
Q ss_pred ChHHHHHHHHhcCceEEEEccchHHHHHHH
Q psy8155 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEI 322 (617)
Q Consensus 293 p~~~l~~il~~~~~~~vl~~~~~~~~~~~~ 322 (617)
..+.+...+++.++.++...+.....+...
T Consensus 256 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 285 (549)
T 3g7s_A 256 NQEMLAENIEKYKGTFSWAVPPALNVLVNT 285 (549)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCeEEEeCCHHHHHHHhh
Confidence 788899999999999999988877665544
No 51
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=97.67 E-value=2.2e-06 Score=88.07 Aligned_cols=38 Identities=8% Similarity=0.172 Sum_probs=32.3
Q ss_pred HHhhcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 575 DLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 575 ~L~~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.....|| |+||| +|++|+| |+ +|+||+||+||++|+||
T Consensus 223 ~~~~~g~--~~TGD-lg~~d~~-g~-~~~GR~dd~Ik~~G~~v 260 (358)
T 4gs5_A 223 AVTNGQT--VQTND-LVEIHGN-AF-QWIGRADNVINSGGVKI 260 (358)
T ss_dssp GGGTTCC--EEEEE-EEEECSS-EE-EEEEEGGGEEEETTEEE
T ss_pred ccccCcc--eecCC-ccccccC-ce-EEcccccCeEEECCEEE
Confidence 3556788 78999 9999997 85 55699999999999986
No 52
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=97.67 E-value=1.8e-05 Score=86.55 Aligned_cols=87 Identities=13% Similarity=0.166 Sum_probs=66.4
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----ccceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTY 569 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~G 569 (617)
|+.+.+..++.....++...=.-.+|.. |..++++......+.++++++++++||.||+|..+.+++++|+|++|
T Consensus 437 G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~G 516 (563)
T 1amu_A 437 GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNG 516 (563)
T ss_dssp TEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTS
T ss_pred CEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCc
Confidence 8889999999888877753222223321 23333333334567889999999999999999999999999999999
Q ss_pred hhhhHHHhhcCC
Q psy8155 570 KLKKLDLQKEGF 581 (617)
Q Consensus 570 K~dr~~L~~~g~ 581 (617)
|++|++|++...
T Consensus 517 Ki~r~~L~~~~~ 528 (563)
T 1amu_A 517 KIDRKQLPEPDL 528 (563)
T ss_dssp SBCGGGSCCCCC
T ss_pred ChhHHhcCCccc
Confidence 999999987644
No 53
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=97.66 E-value=1.8e-06 Score=93.12 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=37.7
Q ss_pred cchhhhHHHh---hcCCCCCccCCeeEEEeCCCceeeCCHHHHHHHhcCCcCC
Q psy8155 568 TYKLKKLDLQ---KEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 568 ~GK~dr~~L~---~~g~~~~~TGD~lg~~d~d~G~l~i~GR~~d~I~~~G~~v 617 (617)
.|+.++...+ .+|| |+||| +|++|+| |+++|+||.||+||++|+||
T Consensus 360 ~gY~~~~~~t~~~~~g~--~~TGD-l~~~~~~-G~l~~~GR~dd~ik~~G~~v 408 (501)
T 3ipl_A 360 NGYLYPTDLTGTFENGY--FNTGD-IAEIDHE-GYVMIYDRRKDLIISGGENI 408 (501)
T ss_dssp SCCSBSTTCCCSEETTE--EEEEE-EEEECTT-SCEEEEEECCCCEECSSCEE
T ss_pred hhhCcChhhcchhcCCc--eecCC-EEEEcCC-CeEEEEccccceEEECCEEE
Confidence 4555444333 4577 78999 9999998 99999999999999999986
No 54
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=97.59 E-value=5.6e-05 Score=81.72 Aligned_cols=98 Identities=11% Similarity=0.120 Sum_probs=68.3
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCCeEEecCC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF-VCLWLGLSKLGVITALINH 290 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~-iva~lA~~~aG~~~vpldp 290 (617)
.|+.+|++.. +-.+|.+.+...+..+... ...++.+++++....+-+... +..+++.+..|+..+.++.
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIED-AAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPK 221 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHC-TTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCG
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhc-cccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCH
Confidence 4677777653 3458999887654433321 125778888888877765443 4567788889999887765
Q ss_pred C--CChHHHHHHHHhcCceEEEEccchHHHH
Q psy8155 291 N--LRQNSLLHCINIAGVSAFIYGAELTDAV 319 (617)
Q Consensus 291 ~--~p~~~l~~il~~~~~~~vl~~~~~~~~~ 319 (617)
. ...+++...+++.++.++...+.....+
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 252 (521)
T 3l8c_A 222 ELVADFKQLFTTIAQLPVGIWTSTPSFADMA 252 (521)
T ss_dssp GGTTCHHHHHHHHHHSCCSEEEECHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHH
Confidence 4 2567888899999999998887766543
No 55
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=97.59 E-value=9.3e-06 Score=87.63 Aligned_cols=87 Identities=11% Similarity=0.168 Sum_probs=0.0
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....+|...=.-.+|.. |. .++++ .++...+.+++++++.++||.||+|..+.+++++|+|+
T Consensus 407 G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 486 (509)
T 3ivr_A 407 GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDA 486 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCC
Confidence 8888888888877766653222223221 22 33333 44556778899999999999999999999999999999
Q ss_pred cchhhhHHHhhcCC
Q psy8155 568 TYKLKKLDLQKEGF 581 (617)
Q Consensus 568 ~GK~dr~~L~~~g~ 581 (617)
+||+||++|++...
T Consensus 487 ~GKidr~~Lr~~~~ 500 (509)
T 3ivr_A 487 KGAIDRAAVKTAHG 500 (509)
T ss_dssp --------------
T ss_pred CCCccHHHHHHHHh
Confidence 99999999998765
No 56
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=97.55 E-value=6.6e-05 Score=80.97 Aligned_cols=96 Identities=6% Similarity=0.124 Sum_probs=70.6
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCCeEEecCC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF-VCLWLGLSKLGVITALINH 290 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~-iva~lA~~~aG~~~vpldp 290 (617)
.++.+|++.. +-.+|.+.+...+..++ ...++.+++++..+++-+..+ +..+++++..|+..+.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHH---HHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 4677777652 34589988876655544 346788999999998865433 4567888999999887765
Q ss_pred C--CChHHHHHHHHhcCceEEEEccchHHHH
Q psy8155 291 N--LRQNSLLHCINIAGVSAFIYGAELTDAV 319 (617)
Q Consensus 291 ~--~p~~~l~~il~~~~~~~vl~~~~~~~~~ 319 (617)
. ...+.+...+++.++.++...+.....+
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 248 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMC 248 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 3 4577888899999999999887766543
No 57
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=97.53 E-value=9e-05 Score=80.64 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=67.1
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCCHHHHHHHHhhcCCCCCcCc-EEEEeecccCC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLDVSAVSEGIKKALPSYARPL-FIRCLREVEMT 566 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~~~~l~~~l~~~Lp~~~~P~-~~~~~~~lP~t 566 (617)
|+.+.+..++.....+|...=.-.+|.. |. .++++ .++...+.+++++++.++||.||+|. .+.+++++|+|
T Consensus 448 G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t 527 (548)
T 2d1s_A 448 GYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKG 527 (548)
T ss_dssp TCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBC
T ss_pred CEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCC
Confidence 8889999999988887754223333322 33 34444 45556788999999999999999999 99999999999
Q ss_pred ccchhhhHHHhhc
Q psy8155 567 GTYKLKKLDLQKE 579 (617)
Q Consensus 567 ~~GK~dr~~L~~~ 579 (617)
++||++|++|++.
T Consensus 528 ~~GKi~r~~L~~~ 540 (548)
T 2d1s_A 528 LTGKIDGRAIREI 540 (548)
T ss_dssp TTSCBCHHHHHHH
T ss_pred CcchhHHHHHHHH
Confidence 9999999999864
No 58
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=97.53 E-value=6.9e-05 Score=80.83 Aligned_cols=97 Identities=8% Similarity=0.081 Sum_probs=71.6
Q ss_pred hCCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCCeEEecC
Q psy8155 220 RSPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF-VCLWLGLSKLGVITALIN 289 (617)
Q Consensus 220 ~~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~-iva~lA~~~aG~~~vpld 289 (617)
..|+.+|++.. +-.+|++.+...+.... ...++.+++++..+++-+..+ +..+++.+..|+..+.++
T Consensus 141 ~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 217 (512)
T 3fce_A 141 VKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217 (512)
T ss_dssp CCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHH---HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECC
Confidence 35677777653 34589988876655443 346889999999999865332 456788899999998887
Q ss_pred CC--CChHHHHHHHHhcCceEEEEccchHHHH
Q psy8155 290 HN--LRQNSLLHCINIAGVSAFIYGAELTDAV 319 (617)
Q Consensus 290 p~--~p~~~l~~il~~~~~~~vl~~~~~~~~~ 319 (617)
+. ...+.+...+++.++.++...+.....+
T Consensus 218 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 249 (512)
T 3fce_A 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249 (512)
T ss_dssp HHHHHSHHHHHHHHHHHCCCEEEECHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEecHHHHHHH
Confidence 64 4677888899999999999887766543
No 59
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=97.50 E-value=1.4e-05 Score=87.54 Aligned_cols=97 Identities=12% Similarity=0.022 Sum_probs=70.2
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCH-HHHHHHHHHHhcCCeEEecCC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP-EFVCLWLGLSKLGVITALINH 290 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~-~~iva~lA~~~aG~~~vpldp 290 (617)
.|+.+|++.. +-.+|.+.+..... .....++.+++++..+++-+. .....+++.+..|+..+....
T Consensus 212 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp CTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCeEEEEECCcCCCCCeEEEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 5677887663 34688887743221 123457889999999888643 345567888899998887764
Q ss_pred -CCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 291 -NLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 291 -~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
....+++...+++.++.++...+.....+..
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 319 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFLVD 319 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 4567889999999999999988877766544
No 60
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=97.49 E-value=9.9e-05 Score=79.93 Aligned_cols=84 Identities=14% Similarity=0.108 Sum_probs=61.4
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc----c-cceEEe-CCCCC-C--CHHHHHHHHhhcCCCCCcCcEEEEeecccC
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT----E-GMAAIL-DINKS-L--DVSAVSEGIKKALPSYARPLFIRCLREVEM 565 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T----E-~~~~v~-~~~~~-~--~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~ 565 (617)
|+.+.+..++.....++...=.-.+|.. | ..++++ .++.. . ..+++++++.++||.||+|..+.+++++|+
T Consensus 436 G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~ 515 (529)
T 2v7b_A 436 GQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPK 515 (529)
T ss_dssp --CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCB
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCC
Confidence 8889999999988877754333334431 2 234444 32221 1 245799999999999999999999999999
Q ss_pred CccchhhhHHHhh
Q psy8155 566 TGTYKLKKLDLQK 578 (617)
Q Consensus 566 t~~GK~dr~~L~~ 578 (617)
|++||++|++|++
T Consensus 516 t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 516 TATGKIQRFKLRE 528 (529)
T ss_dssp CTTSCBCHHHHHC
T ss_pred CCccchhHHhHhh
Confidence 9999999999986
No 61
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=97.45 E-value=6.4e-05 Score=90.41 Aligned_cols=85 Identities=20% Similarity=0.252 Sum_probs=64.8
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEeCCCCCCCHHHHHHHHhhcCCCCCcCcEEEEeecccCCcc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGT 568 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~~~~lP~t~~ 568 (617)
|..+.+..++.....++.++=.-..+. .+. +++++. ....+.++++++++++||.||+|..+++++++|+|+|
T Consensus 868 G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~-~~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~ 946 (1304)
T 2vsq_A 868 GHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVN-RTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTN 946 (1304)
T ss_dssp TEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEEC-SSSSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSS
T ss_pred CEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeC-CCCCCHHHHHHHHHHhChHhhhccEEEEecccCCCCC
Confidence 888999999888888775421112221 122 344443 3367789999999999999999999999999999999
Q ss_pred chhhhHHHhhcC
Q psy8155 569 YKLKKLDLQKEG 580 (617)
Q Consensus 569 GK~dr~~L~~~g 580 (617)
||+||++|++..
T Consensus 947 GKidR~~L~~~~ 958 (1304)
T 2vsq_A 947 GKVNKRLLPKPD 958 (1304)
T ss_dssp CSSCCSCCCCCC
T ss_pred cccCHhhcCCcc
Confidence 999999997653
No 62
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=97.44 E-value=5.7e-05 Score=81.15 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=31.2
Q ss_pred CCCCCccCCeeEEEeC--C-CceeeCCHHHHHHHhcCCcCC
Q psy8155 580 GFDPNVIQDRLYYLSS--K-GVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 580 g~~~~~TGD~lg~~d~--d-~G~l~i~GR~~d~I~~~G~~v 617 (617)
|...|++|| +.+... + ...+.|+||.||+|+++|+||
T Consensus 396 GL~RYr~GD-~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl 435 (581)
T 4eql_A 396 GLYRMRVGD-IVLVTGFYNNAPQFKFVRRENVVLSIDSDKT 435 (581)
T ss_dssp SCCSEECCE-EEEEEEEETTEEEEEEEEETTEEECSSSCCE
T ss_pred ceeeEEcCC-EEEEcccCCCCcEEEEEEecCCEEEeeeeEC
Confidence 555578999 998885 2 368999999999999999986
No 63
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=97.38 E-value=0.00014 Score=80.80 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=66.0
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCC---HHHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLD---VSAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~---~~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|..+.+..++.....++.+.=.-.+|.. |. .++|+ .++...+ .++|+++++++||+||+|..+.+++++|
T Consensus 524 G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP 603 (652)
T 1pg4_A 524 GHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLP 603 (652)
T ss_dssp TEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCC
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCC
Confidence 8889999999888887754222233321 22 44444 3333333 4689999999999999999999999999
Q ss_pred CCccchhhhHHHhhcCCCC-CccCCeeEEEeC
Q psy8155 565 MTGTYKLKKLDLQKEGFDP-NVIQDRLYYLSS 595 (617)
Q Consensus 565 ~t~~GK~dr~~L~~~g~~~-~~TGD~lg~~d~ 595 (617)
+|++||++|++|++.--.. ...|| ...+.+
T Consensus 604 ~T~sGKi~R~~L~~~~~~~~~~~~~-~~~l~~ 634 (652)
T 1pg4_A 604 KTRSGKIMRRILRKIAAGDTSNLGD-TSTLAD 634 (652)
T ss_dssp BCTTSCBCHHHHHHHHHTC-----------CC
T ss_pred CCCCccchHHHHHHHHhCCCCCCCC-ccccCC
Confidence 9999999999998642211 12466 555543
No 64
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.35 E-value=9.2e-05 Score=79.73 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=31.4
Q ss_pred CCCCCccCCeeEEEeC---CCceeeCCHHHHHHHhcCCcCC
Q psy8155 580 GFDPNVIQDRLYYLSS---KGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 580 g~~~~~TGD~lg~~d~---d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|...|++|| +.+.+. ....+.|+||.|++|+++|+||
T Consensus 408 GL~RYr~GD-~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki 447 (609)
T 4b2g_A 408 GLYRYRVGD-ILRVTGFHNSAPQFHFVRRKNVLLSIDSDKT 447 (609)
T ss_dssp SCCSEEEEE-EEEEEEEETTEEEEEEEEETTCCBCSSSCCB
T ss_pred hhhheecCC-EEEEeecCCCCcEEEEEEecCCeEEccccCC
Confidence 555688999 998883 2378999999999999999986
No 65
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=97.34 E-value=0.00013 Score=79.99 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=47.6
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCCCC---HHHHHHHHhhcCCCCCcCcEEEEeeccc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKSLD---VSAVSEGIKKALPSYARPLFIRCLREVE 564 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~~~---~~~l~~~l~~~Lp~~~~P~~~~~~~~lP 564 (617)
|+.+.+..++......|.+.=.-.+|.. |. .++++ .++...+ .++|+++++++||.||+|..+.+++++|
T Consensus 482 G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP 561 (580)
T 3etc_A 482 GYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELP 561 (580)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--
T ss_pred CEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCC
Confidence 8889999999988877754222233321 22 34444 3333333 3689999999999999999999999999
Q ss_pred CCccchhhhHHHhhc
Q psy8155 565 MTGTYKLKKLDLQKE 579 (617)
Q Consensus 565 ~t~~GK~dr~~L~~~ 579 (617)
+|++||++|++|++.
T Consensus 562 ~t~sGKi~R~~Lr~~ 576 (580)
T 3etc_A 562 KTISGKIRRVEIRDK 576 (580)
T ss_dssp ---------------
T ss_pred CCCCcCCcHHHHHhH
Confidence 999999999999865
No 66
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=97.29 E-value=0.00011 Score=80.41 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=65.1
Q ss_pred ccCCCHHHHHHHHHHcCcccccccccc-----ccc-ceEEeC-CCC--C---CCHHHHHHHHhhcCCCCCcCcEEEEeec
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGA-----TEG-MAAILD-INK--S---LDVSAVSEGIKKALPSYARPLFIRCLRE 562 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~-----TE~-~~~v~~-~~~--~---~~~~~l~~~l~~~Lp~~~~P~~~~~~~~ 562 (617)
|+.+.+..++......|.+.=.-.+|. .|. .++++. ++. . ...+++++++.++||.||+|..+.++++
T Consensus 463 G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~ 542 (570)
T 3c5e_A 463 GYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLN 542 (570)
T ss_dssp TEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESC
T ss_pred CEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEecc
Confidence 888999999998888775422333332 133 344442 221 1 1256899999999999999999999999
Q ss_pred ccCCccchhhhHHHhhcCC
Q psy8155 563 VEMTGTYKLKKLDLQKEGF 581 (617)
Q Consensus 563 lP~t~~GK~dr~~L~~~g~ 581 (617)
+|+|++||++|++|++..+
T Consensus 543 lP~t~~GKi~R~~L~~~~~ 561 (570)
T 3c5e_A 543 LPKTVTGKIQRAKLRDKEW 561 (570)
T ss_dssp CCBCTTCCBCHHHHHHHHT
T ss_pred CCCCCCcCCcHHHHHHHHH
Confidence 9999999999999998765
No 67
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=97.19 E-value=4e-05 Score=83.31 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=32.4
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEeCCCCCCCHHHHHHHHhh-cCCCCCcCcEEEEeecccCCc
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAILDINKSLDVSAVSEGIKK-ALPSYARPLFIRCLREVEMTG 567 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~~~~~~~~~~~l~~~l~~-~Lp~~~~P~~~~~~~~lP~t~ 567 (617)
|+.+.+..++.....++.+.=.-.+|.. |. .++++..+...+.+++++++.+ +||.||+|..+++++++|+|+
T Consensus 442 G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~ 521 (541)
T 1v25_A 442 GEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTS 521 (541)
T ss_dssp TEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CCCTTTSCSBC----------
T ss_pred CEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCC
Confidence 8889998888877776654323334321 33 3333333445667889999999 899999999999999999999
Q ss_pred cchhhhHHHhhc
Q psy8155 568 TYKLKKLDLQKE 579 (617)
Q Consensus 568 ~GK~dr~~L~~~ 579 (617)
+||++|++|++.
T Consensus 522 ~GKi~r~~L~~~ 533 (541)
T 1v25_A 522 AGKFLKRALREQ 533 (541)
T ss_dssp ----CCTTHHHH
T ss_pred ccCeeHHHHHHH
Confidence 999999999875
No 68
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=97.19 E-value=0.00041 Score=77.22 Aligned_cols=100 Identities=18% Similarity=0.155 Sum_probs=63.3
Q ss_pred ccCCCHHHHHHHHHHcCccccccccccc-----cc-ceEEe-CCCCC---C-C------HHHHHHHHhhcCCCCCcCcEE
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFYGAT-----EG-MAAIL-DINKS---L-D------VSAVSEGIKKALPSYARPLFI 557 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~YG~T-----E~-~~~v~-~~~~~---~-~------~~~l~~~l~~~Lp~~~~P~~~ 557 (617)
|..+.+..++.....++.+.=.-.+|.. |. .++|+ .++.. . + .++|+++++++||+||+|..+
T Consensus 533 G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i 612 (663)
T 1ry2_A 533 GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLI 612 (663)
T ss_dssp SCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEE
T ss_pred CEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEE
Confidence 8889999999988877754222233321 33 44444 32222 1 1 468999999999999999999
Q ss_pred EEeecccCCccchhhhHHHhhcCCCC-CccCCeeEEEeC
Q psy8155 558 RCLREVEMTGTYKLKKLDLQKEGFDP-NVIQDRLYYLSS 595 (617)
Q Consensus 558 ~~~~~lP~t~~GK~dr~~L~~~g~~~-~~TGD~lg~~d~ 595 (617)
++++++|+|++||++|+.|++.--.. ..-|| ...+.+
T Consensus 613 ~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~-~~~l~~ 650 (663)
T 1ry2_A 613 ILVDDLPKTRSGKIMRRILRKILAGESDQLGD-VSTLSN 650 (663)
T ss_dssp EECSCCCBCTTSCBCHHHHHHSCC--------------C
T ss_pred EEcCCCCCCCccCchHHHHHHHHcCCCCCCCC-cccccC
Confidence 99999999999999999998753311 02366 544443
No 69
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=97.16 E-value=0.0002 Score=76.85 Aligned_cols=37 Identities=8% Similarity=-0.127 Sum_probs=30.1
Q ss_pred CCCCCccCCeeEEEeC---CCceeeCCHHHHHHHhcCCcCC
Q psy8155 580 GFDPNVIQDRLYYLSS---KGVYEELTPEVYKDLVQGNIRL 617 (617)
Q Consensus 580 g~~~~~TGD~lg~~d~---d~G~l~i~GR~~d~I~~~G~~v 617 (617)
|...|++|| +.+... ....+.|+||.|++|+++|+||
T Consensus 403 GL~RYr~GD-~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~ 442 (581)
T 4epl_A 403 GLYRYRLGD-VVKVIGFYNNTPQLKFICRRNLILSINIDKN 442 (581)
T ss_dssp SCSSEEEEE-EEEEEEEETTEEEEEEEEETTCCBCSSSCCB
T ss_pred ceeeEEcCC-EEEEecccCCCcEEEEEeecCCeEEeeeeEC
Confidence 455578999 888874 1256999999999999999986
No 70
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=97.06 E-value=8.7e-05 Score=86.68 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=71.8
Q ss_pred hCCCceEEEEC---------CceecHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCCH--HHHHHHHHHHhcCCeEEe
Q psy8155 220 RSPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRP--EFVCLWLGLSKLGVITAL 287 (617)
Q Consensus 220 ~~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~-~~gv~~g~~V~i~~~~s~--~~iva~lA~~~aG~~~vp 287 (617)
..|+.+|++.. +-.+|.+.+...+........ ..++.+++++...+|-.- .+...++..+..|+..+.
T Consensus 222 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~ 301 (979)
T 3tsy_A 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILI 301 (979)
T ss_dssp CCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEE
T ss_pred CCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEE
Confidence 35778887653 346899888765443332221 346889999998888543 334557888999999887
Q ss_pred cCCCCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 288 ldp~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
.+ ....+.+...+++.++.++...+.....+..
T Consensus 302 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 334 (979)
T 3tsy_A 302 MP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAK 334 (979)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred eC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHh
Confidence 65 4667889999999999999988876655543
No 71
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=96.88 E-value=0.0017 Score=68.16 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=74.3
Q ss_pred ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--CHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEE
Q psy8155 232 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN--RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAF 309 (617)
Q Consensus 232 ~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~--s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~v 309 (617)
-.+|.+.+...+..+++.+...|+.+++++..+++- ....+..+++.+..|+..++.++. ..+++...+++.++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEE
Confidence 358999999888888888988999999999999874 445566778889999999988764 56888899999999999
Q ss_pred EEccchHHHHHHH
Q psy8155 310 IYGAELTDAVQEI 322 (617)
Q Consensus 310 l~~~~~~~~~~~~ 322 (617)
+..+.....+...
T Consensus 183 ~~~P~~~~~l~~~ 195 (436)
T 3qov_A 183 HAIPSYAIRLAEV 195 (436)
T ss_dssp ECCHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
Confidence 9988877665543
No 72
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=96.87 E-value=0.00019 Score=79.23 Aligned_cols=97 Identities=10% Similarity=-0.025 Sum_probs=70.2
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCCeEEecC-
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF-VCLWLGLSKLGVITALIN- 289 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~-iva~lA~~~aG~~~vpld- 289 (617)
.|+.+|++.. +-.+|.+.+...+. .....++.+++++..+++-+.+. +..+++.+..|+..+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 4677887653 34588887754322 22345788999999998865443 455788899999888764
Q ss_pred CCCChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 290 HNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 290 p~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
.....+.+...+++.++..+...+.....+..
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~ 269 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLVD 269 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHHh
Confidence 24678899999999999999988877666544
No 73
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=96.86 E-value=0.00016 Score=78.81 Aligned_cols=88 Identities=9% Similarity=0.022 Sum_probs=64.3
Q ss_pred ceecHHHHHHHHHHHHHHHH-----HCCCCCCCEEEEEcCCCHHH-HHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcC
Q psy8155 232 TEWTAQQVEAYSNRVANFFL-----AQGLKKGDSVALMLENRPEF-VCLWLGLSKLGVITALINHNLRQNSLLHCINIAG 305 (617)
Q Consensus 232 ~~lTy~eL~~~a~~lA~~L~-----~~gv~~g~~V~i~~~~s~~~-iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~ 305 (617)
-.+|++.+...+..++..+. ...+...+++....+.+... +..++..+..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 35899999888877777654 24567788888777765443 4456778889998887655444567888899999
Q ss_pred ceEEEEccchHHHH
Q psy8155 306 VSAFIYGAELTDAV 319 (617)
Q Consensus 306 ~~~vl~~~~~~~~~ 319 (617)
+..+...+.....+
T Consensus 273 ~t~~~~~P~~l~~~ 286 (562)
T 3ite_A 273 VTHAGIVPSLLDQT 286 (562)
T ss_dssp CCEEEECHHHHHHH
T ss_pred CCEEEcCHHHHhhc
Confidence 99998887755443
No 74
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=96.63 E-value=0.00031 Score=76.40 Aligned_cols=99 Identities=6% Similarity=0.067 Sum_probs=71.2
Q ss_pred CCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHH-HHHHHHHHHhcCCeEEecCCC
Q psy8155 222 PNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE-FVCLWLGLSKLGVITALINHN 291 (617)
Q Consensus 222 p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~-~iva~lA~~~aG~~~vpldp~ 291 (617)
++.+|++.. +-.+|.+.+...+......+...++.+++++..++|-+-. -+..+++.+.+|+..+.++ .
T Consensus 189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~ 267 (550)
T 3rix_A 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-R 267 (550)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-S
T ss_pred CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-C
Confidence 456776542 3458998877665544443333578899999988886533 2455677888999988875 4
Q ss_pred CChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 292 LRQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 292 ~p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
...+.+...+++.++..++..+.....+..
T Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (550)
T 3rix_A 268 FEEELFLRSLQDYKIQSALLVPTLFSFFAK 297 (550)
T ss_dssp CCHHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCeEEEeCcHHHHHHHh
Confidence 678889999999999999998877665543
No 75
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=95.35 E-value=0.0059 Score=66.49 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=69.3
Q ss_pred CCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHH--HHHHHHHHHhcCCeEEecC
Q psy8155 221 SPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE--FVCLWLGLSKLGVITALIN 289 (617)
Q Consensus 221 ~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~--~iva~lA~~~aG~~~vpld 289 (617)
.|+.+|++.. +-.+|.+.+...+..+... ..++.+++++...+|-+-. ++..+++.+..|+..+.+.
T Consensus 174 ~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (576)
T 3gqw_A 174 VPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLR 251 (576)
T ss_dssp CTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECC
T ss_pred CCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcc
Confidence 4678888764 3468999886654443221 2588999999998886544 3445777888888887765
Q ss_pred CC---CChHHHHHHHHhcCceEEEEccchHHHH
Q psy8155 290 HN---LRQNSLLHCINIAGVSAFIYGAELTDAV 319 (617)
Q Consensus 290 p~---~p~~~l~~il~~~~~~~vl~~~~~~~~~ 319 (617)
+. ...+++...+++.++.++++.+.....+
T Consensus 252 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 284 (576)
T 3gqw_A 252 TQDFAMRPLQWLKLISKNRGTVSVAPPFGYELC 284 (576)
T ss_dssp HHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred hhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHH
Confidence 42 3567788899999999999887665544
No 76
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=94.74 E-value=0.011 Score=64.53 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=72.2
Q ss_pred hCCCceEEEEC---------CceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCCHHH--HHHHHHHHhcCCeEEec
Q psy8155 220 RSPNKVIFMFE---------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEF--VCLWLGLSKLGVITALI 288 (617)
Q Consensus 220 ~~p~~~Al~~~---------~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s~~~--iva~lA~~~aG~~~vpl 288 (617)
..|+.+|++.. +-.+|++.+...+...+. ..++.+++++..++|-+-.+ ...+++.+..|+..+..
T Consensus 164 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~ 240 (590)
T 3kxw_A 164 IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM 240 (590)
T ss_dssp CCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence 35677887653 345899988777665544 46889999999999876544 33478889999998887
Q ss_pred CCCC---ChHHHHHHHHhcCceEEEEccchHHHHHH
Q psy8155 289 NHNL---RQNSLLHCINIAGVSAFIYGAELTDAVQE 321 (617)
Q Consensus 289 dp~~---p~~~l~~il~~~~~~~vl~~~~~~~~~~~ 321 (617)
.+.. ..+.+...+++.++.++.+.+.....+..
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 276 (590)
T 3kxw_A 241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVK 276 (590)
T ss_dssp CHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHH
T ss_pred CHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHH
Confidence 6542 46778888999999998887765555443
No 77
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=90.55 E-value=2 Score=44.45 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=73.2
Q ss_pred eecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCC--CHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEE
Q psy8155 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN--RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 310 (617)
Q Consensus 233 ~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~--s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl 310 (617)
.+|.+.+...+..+++.+...|+.+++++..+++- ....+..+++.+..|+..+++++. ..+++...+++.++.+++
T Consensus 109 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~ 187 (437)
T 2y27_A 109 GYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDIIM 187 (437)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCEEE
Confidence 58999998888888888888999999999999885 344455678889999999987764 678889999999999999
Q ss_pred EccchHHHHHHH
Q psy8155 311 YGAELTDAVQEI 322 (617)
Q Consensus 311 ~~~~~~~~~~~~ 322 (617)
..+.....+...
T Consensus 188 ~~Ps~~~~l~~~ 199 (437)
T 2y27_A 188 VTPSYMLSIADE 199 (437)
T ss_dssp ECHHHHHHHHHH
T ss_pred ECHHHHHHHHHH
Confidence 988877665543
No 78
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=89.99 E-value=2.2 Score=44.18 Aligned_cols=89 Identities=13% Similarity=0.189 Sum_probs=73.3
Q ss_pred eecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCC--HHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEE
Q psy8155 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR--PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 310 (617)
Q Consensus 233 ~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s--~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl 310 (617)
.+|.+.+...+..+++.+...|+.+++++..+++-+ ...+..+++.+..|+..+++++. ..+++...+++.++.++.
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~ 189 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKIIL 189 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEEE
Confidence 589999998888888888889999999999998853 44455678889999999988764 678888999999999999
Q ss_pred EccchHHHHHHH
Q psy8155 311 YGAELTDAVQEI 322 (617)
Q Consensus 311 ~~~~~~~~~~~~ 322 (617)
..+.....+...
T Consensus 190 ~~Ps~~~~l~~~ 201 (443)
T 2y4o_A 190 VTPSYMLNLIDE 201 (443)
T ss_dssp ECHHHHHHHHHH
T ss_pred ECHHHHHHHHHH
Confidence 988876665543
No 79
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=87.03 E-value=0.31 Score=39.77 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=42.6
Q ss_pred ccCCCHHHHHHHHHHcCcccccccc-------cccccceEEe-CCCCCC----CHHHHHHHHhhcCC-CCCcCcEEEEee
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFY-------GATEGMAAIL-DINKSL----DVSAVSEGIKKALP-SYARPLFIRCLR 561 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~Y-------G~TE~~~~v~-~~~~~~----~~~~l~~~l~~~Lp-~~~~P~~~~~~~ 561 (617)
|..+.|..++.....+|.. ...| +..|...+++ .++... +.+++.+.+.+.+. .+.+|..+.+++
T Consensus 11 G~nv~P~eIE~~l~~~p~v--~~~~~v~v~~~~~~e~l~~~ve~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~v~ 88 (109)
T 3gxs_A 11 GVNIFPIQIETILLQFKEL--GSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTPRVKLVP 88 (109)
T ss_dssp TEEECHHHHHHHHHTCTTE--EEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred CEEECHHHHHHHHHhCCCc--CCcEEEEEEcCCCceEEEEEEEEcCccccchhHHHHHHHHHHHHHHHhhCCceEEEEEC
Confidence 7788999889888877642 2222 2233333333 322211 23455555555543 345555788887
Q ss_pred --cccCCccchhhh
Q psy8155 562 --EVEMTGTYKLKK 573 (617)
Q Consensus 562 --~lP~t~~GK~dr 573 (617)
+||+| +||+.|
T Consensus 89 ~~~lPrt-sGKi~R 101 (109)
T 3gxs_A 89 KGALPKS-EGKAVR 101 (109)
T ss_dssp TTCSCCC----CCC
T ss_pred CCCccCC-CCceEE
Confidence 89999 999865
No 80
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=85.63 E-value=0.31 Score=39.69 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=40.7
Q ss_pred ccCCCHHHHHHHHHHcCcccccccc--c-----cccc-ceEEe-CCCCCCCH---HHHHHHHhhcCCCC-CcCcEEEEe-
Q psy8155 495 GNGLRPQIWSEFVDRFRIAQIGEFY--G-----ATEG-MAAIL-DINKSLDV---SAVSEGIKKALPSY-ARPLFIRCL- 560 (617)
Q Consensus 495 Ge~l~~~~~~~~~~~~~~~~l~n~Y--G-----~TE~-~~~v~-~~~~~~~~---~~l~~~l~~~Lp~~-~~P~~~~~~- 560 (617)
|..+.|..++.....+|.. ...| | ..|. .+++. .++...+. .++.+.+.+.+..+ ++|..+.++
T Consensus 11 G~nv~P~eIE~vl~~~p~v--~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~~~v~~v~ 88 (109)
T 3lax_A 11 GVNIFPIQIETILLQFKEL--GSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTPRVKLVP 88 (109)
T ss_dssp TEEECHHHHHHHHHTCTTE--EEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred CEEECHHHHHHHHHhCCCc--ccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCccceEEEc
Confidence 8889999999988887752 2221 1 1122 33333 33333332 34445555554432 355566666
Q ss_pred -ecccCCccchhhh
Q psy8155 561 -REVEMTGTYKLKK 573 (617)
Q Consensus 561 -~~lP~t~~GK~dr 573 (617)
++||+| +||+.|
T Consensus 89 ~~~lPrt-sGKi~R 101 (109)
T 3lax_A 89 KGALPKS-EGKAVR 101 (109)
T ss_dssp TTCSCCC----CCC
T ss_pred CCeecCC-CCCcch
Confidence 589998 799866
No 81
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=74.19 E-value=11 Score=37.76 Aligned_cols=86 Identities=6% Similarity=-0.063 Sum_probs=62.7
Q ss_pred ceecHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCC--HHHHHHHHHHHhcCCeEEecCCCCChH--------------
Q psy8155 232 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR--PEFVCLWLGLSKLGVITALINHNLRQN-------------- 295 (617)
Q Consensus 232 ~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~s--~~~iva~lA~~~aG~~~vpldp~~p~~-------------- 295 (617)
-.+|.+.+...+..+++.+...|+.+++++..+++-+ ..-+...++.+..|+.+++.+ +.+.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 3579999988888777777888999999999998862 223444555588999666644 2233
Q ss_pred ---------HHHHHHHhcCceEEEEccchHHHH
Q psy8155 296 ---------SLLHCINIAGVSAFIYGAELTDAV 319 (617)
Q Consensus 296 ---------~l~~il~~~~~~~vl~~~~~~~~~ 319 (617)
++...+++.++.+++..+.....+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 666688999999999887765543
No 82
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=73.72 E-value=30 Score=35.66 Aligned_cols=104 Identities=13% Similarity=-0.029 Sum_probs=74.6
Q ss_pred CCCCeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHh---CCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC
Q psy8155 371 GVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI---GFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447 (617)
Q Consensus 371 ~~~~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~ 447 (617)
.|+.+|++.........-+...+|.+.+...+..++..+ +. ++|++...++-+... +..+++++..|+..+..+
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vpl~ 113 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY--VVAFLGALQAGRIAVPLS 113 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEEC
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH--HHHHHHHHHhCcEEEeeC
Confidence 567788775542211111346899998887776665554 44 899999888766543 567889999999999875
Q ss_pred C----CCHHHHHHHHHHcCCcEEeecHHHHHHHH
Q psy8155 448 K----FSASNYFSDVCKYKCTVGQYIGEMCRYLL 477 (617)
Q Consensus 448 ~----~d~~~l~~~i~~~~vt~~~~~P~~~~~l~ 477 (617)
. ...+++...+++.++.++...+.....+.
T Consensus 114 ~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 147 (480)
T 3t5a_A 114 VPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147 (480)
T ss_dssp SCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred CCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence 3 45678889999999999988877665544
No 83
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=46.08 E-value=1.4e+02 Score=29.06 Aligned_cols=67 Identities=13% Similarity=-0.026 Sum_probs=46.9
Q ss_pred HHHHHCCC-CCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccc
Q psy8155 248 NFFLAQGL-KKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE 314 (617)
Q Consensus 248 ~~L~~~gv-~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~ 314 (617)
..+.+.|. ++|+.|.+....+-.-....+++.+.|.-++.+-|.........+++..++++++++..
T Consensus 60 ~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 60 DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33445564 88887655555566667777777778987666655554455567788999999999864
No 84
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=34.74 E-value=2.8e+02 Score=27.21 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=40.3
Q ss_pred HHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCC-----CChHHHHHHHHhcC--ceEEEEc
Q psy8155 249 FFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN-----LRQNSLLHCINIAG--VSAFIYG 312 (617)
Q Consensus 249 ~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~-----~p~~~l~~il~~~~--~~~vl~~ 312 (617)
.|...++++||.|.+..+....+. -++...|+.++.++.+ ...+.+...+...+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 355557899999988877655543 3456789876655532 36778888774444 7777643
No 85
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=31.95 E-value=3.6e+02 Score=26.08 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=37.7
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCC-------CChHHHHHHHHhcCceEEEEc
Q psy8155 255 LKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN-------LRQNSLLHCINIAGVSAFIYG 312 (617)
Q Consensus 255 v~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~-------~p~~~l~~il~~~~~~~vl~~ 312 (617)
+++|+.|.+..+.-..+. .++...|+.+++++.. ...+.+...+++.++++|+..
T Consensus 106 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFY---SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHHHH---HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 468899887766555433 3455678877766543 567889888876677777543
No 86
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=29.82 E-value=1.8e+02 Score=28.44 Aligned_cols=70 Identities=6% Similarity=-0.044 Sum_probs=50.9
Q ss_pred HHHHHHHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccc
Q psy8155 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE 314 (617)
Q Consensus 245 ~lA~~L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~ 314 (617)
.+.....+.-+++|.+..+....+-.-+...+++.+.|.-++.+-|..........++..++++++++..
T Consensus 73 ~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 73 MITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3333333333577876666777777778888888899987777767666666677889999999999754
No 87
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=28.31 E-value=1.2e+02 Score=29.45 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=41.9
Q ss_pred HHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEcc
Q psy8155 250 FLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA 313 (617)
Q Consensus 250 L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~ 313 (617)
|...++++|++|.|...-+.-..++.++....|+..+-++.+ +++ ..+.+..++..++-..
T Consensus 156 l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i~~~ 216 (348)
T 4eez_A 156 IKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTINSG 216 (348)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEEEC-
T ss_pred ecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEEeCC
Confidence 445578999999999887777777777666667766666553 344 4566777887777543
No 88
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=24.17 E-value=4.8e+02 Score=24.95 Aligned_cols=55 Identities=9% Similarity=0.095 Sum_probs=35.9
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEE--ecCCC--CChHHHHHHHHhcCceEEEEc
Q psy8155 255 LKKGDSVALMLENRPEFVCLWLGLSKLGVITA--LINHN--LRQNSLLHCINIAGVSAFIYG 312 (617)
Q Consensus 255 v~~g~~V~i~~~~s~~~iva~lA~~~aG~~~v--pldp~--~p~~~l~~il~~~~~~~vl~~ 312 (617)
+++|+.|.+..+.-..+.- ++...|+.++ |++++ ...+.+...++..++++|+..
T Consensus 106 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYAM---SAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSCH---HHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHHH---HHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 5789999887775444322 2456677655 44443 467888888887677777653
No 89
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=23.18 E-value=4.1e+02 Score=23.87 Aligned_cols=65 Identities=18% Similarity=0.023 Sum_probs=38.6
Q ss_pred CeEEEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcCCCCHHH
Q psy8155 374 DKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASN 453 (617)
Q Consensus 374 ~~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~~~d~~~ 453 (617)
+.-+|+|||.+| +..+.+.+++..+-.+++..|-.- +.+.. .|-.++++++.+.+.
T Consensus 161 ~~d~v~ftS~s~----------------v~~~~~~~~~~~~~~~~aIG~~Ta------~~l~~--~G~~v~va~~~~~e~ 216 (229)
T 3p9z_A 161 EKSILIFTAISH----------------AKAFLHYFEFLENYTAISIGNTTA------LYLQE--QGIPSYIAKKPSLEA 216 (229)
T ss_dssp TTCEEEECSHHH----------------HHHHHHHSCCCTTCEEEESSHHHH------HHHHH--TTCCEEECSSSSHHH
T ss_pred CCeEEEEECHHH----------------HHHHHHHhCcccCCEEEEECHHHH------HHHHH--cCCCceeCCCCCHHH
Confidence 445899999864 222223334444455655544322 22222 366677778899999
Q ss_pred HHHHHHHcC
Q psy8155 454 YFSDVCKYK 462 (617)
Q Consensus 454 l~~~i~~~~ 462 (617)
+++.+.+.+
T Consensus 217 ll~~l~~l~ 225 (229)
T 3p9z_A 217 CLELALSLR 225 (229)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999988754
No 90
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=23.01 E-value=4.9e+02 Score=26.33 Aligned_cols=64 Identities=13% Similarity=-0.005 Sum_probs=44.9
Q ss_pred HHHCCC-CCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEcc
Q psy8155 250 FLAQGL-KKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA 313 (617)
Q Consensus 250 L~~~gv-~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~ 313 (617)
..+.|+ ++|....|....+-.-....+++.+.|.-.+.+-|..........++..++++++++.
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 345664 6775555555557667777777888898776665655555566788999999999975
No 91
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=22.91 E-value=4.9e+02 Score=24.69 Aligned_cols=65 Identities=12% Similarity=-0.013 Sum_probs=41.5
Q ss_pred HHHHCCC-CCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccc
Q psy8155 249 FFLAQGL-KKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE 314 (617)
Q Consensus 249 ~L~~~gv-~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~ 314 (617)
.+.+.|. ++|+.|.... .+-.-....+++.+.|.-++.+-|..........++..++++++++..
T Consensus 52 ~a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 52 QAEKDGTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHTTSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 3445554 5666555544 455555666666788876655544433444556788899999999875
No 92
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=22.62 E-value=2.1e+02 Score=28.19 Aligned_cols=75 Identities=8% Similarity=-0.041 Sum_probs=0.0
Q ss_pred EEEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC-----CCCH
Q psy8155 377 IYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK-----KFSA 451 (617)
Q Consensus 377 ~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~-----~~d~ 451 (617)
.+++|+|+| ..+......+++.++|.++...|-++.....+.. .|+.++..+ ..|+
T Consensus 49 ~v~~~~ggt--------------~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~-----~g~~~~~v~~~~~~~~d~ 109 (394)
T 1o69_A 49 NALALNSAT--------------AALHLALRVAGVKQDDIVLASSFTFIASVAPICY-----LKAKPVFIDCDETYNIDV 109 (394)
T ss_dssp EEEEESCHH--------------HHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHH-----TTCEEEEECBCTTSSBCH
T ss_pred cEEEeCCHH--------------HHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHH-----cCCEEEEEEeCCCCCcCH
Q ss_pred HHHHHHHHHc--CCcEEeecH
Q psy8155 452 SNYFSDVCKY--KCTVGQYIG 470 (617)
Q Consensus 452 ~~l~~~i~~~--~vt~~~~~P 470 (617)
+.+.+.+.+. ++..+.+++
T Consensus 110 ~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 110 DLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHHHHHhcccCCceEEEEEC
No 93
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=22.60 E-value=5.2e+02 Score=25.02 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=40.9
Q ss_pred CCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccc
Q psy8155 253 QGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE 314 (617)
Q Consensus 253 ~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~ 314 (617)
.++++|++|.|...-+....++.+|-...|+..+-++. +++++. .+++.++..++...+
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~vi~~~~ 240 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLK-LAERLGADHVVDARR 240 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHH-HHHHTTCSEEEETTS
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHH-HHHHhCCCEEEeccc
Confidence 57899999999998666777777766543886666654 244544 456788887776443
No 94
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=21.77 E-value=2.9e+02 Score=26.66 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEcc
Q psy8155 254 GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA 313 (617)
Q Consensus 254 gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~ 313 (617)
++++|++|.|...-+....++.+|-..-|+.++-++.+ ++++ .++++.++..++...
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~--~~~~-~~~~~lGa~~~i~~~ 224 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLD--DDRL-ALAREVGADAAVKSG 224 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESC--HHHH-HHHHHTTCSEEEECS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC--HHHH-HHHHHcCCCEEEcCC
Confidence 56777777777765556666666554435555555442 3333 345666776666543
No 95
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=21.77 E-value=5.3e+02 Score=24.59 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=42.7
Q ss_pred HHHCC-CCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEccc
Q psy8155 250 FLAQG-LKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE 314 (617)
Q Consensus 250 L~~~g-v~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~~ 314 (617)
+.+.| +++|....+....+-.-....+++.+.|.-++.+-|..........++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34556 456643334455666666666777789987666555444455566788899999999864
No 96
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=21.29 E-value=2.4e+02 Score=27.21 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=42.5
Q ss_pred HHHCCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCeEEecCCCCChHHHHHHHHhcCceEEEEcc
Q psy8155 250 FLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA 313 (617)
Q Consensus 250 L~~~gv~~g~~V~i~~~~s~~~iva~lA~~~aG~~~vpldp~~p~~~l~~il~~~~~~~vl~~~ 313 (617)
|...++++|++|.|....+....++.+|-. .|+..+-++. +++++. .+++.++..++...
T Consensus 159 l~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~i~~~ 218 (340)
T 3s2e_A 159 LKVTDTRPGQWVVISGIGGLGHVAVQYARA-MGLRVAAVDI--DDAKLN-LARRLGAEVAVNAR 218 (340)
T ss_dssp HHTTTCCTTSEEEEECCSTTHHHHHHHHHH-TTCEEEEEES--CHHHHH-HHHHTTCSEEEETT
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeC--CHHHHH-HHHHcCCCEEEeCC
Confidence 445578999999999887777777777764 5887666655 244444 56778888777543
No 97
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=21.14 E-value=5.5e+02 Score=24.55 Aligned_cols=51 Identities=4% Similarity=-0.057 Sum_probs=28.2
Q ss_pred CCCCEEEEc-CcchhhHHHHHHHHHHhHcCcEEEEcCC------CCHHHHHHHHHHcCCcEE
Q psy8155 412 RTKDRFYTP-LPLYHTAGGAMCIGQALIFGCCVVIRKK------FSASNYFSDVCKYKCTVG 466 (617)
Q Consensus 412 ~~~d~~l~~-~p~~~~~~~~~~~~~~L~~G~~lvi~~~------~d~~~l~~~i~~~~vt~~ 466 (617)
.++|.++.. .+.+|.. ... ..-..|..++..+. .|++.+.+.+.+.++..+
T Consensus 84 ~~gd~vlv~~~~~~~~~--~~~--~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v 141 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDR--FAD--CLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAV 141 (385)
T ss_dssp CSCCEEEEECSSHHHHH--HHH--HHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEE
T ss_pred CCCCeEEEEcCCcchHH--HHH--HHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEE
Confidence 567776555 4444432 111 12345777776543 477788777766444443
No 98
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=21.05 E-value=3.4e+02 Score=26.18 Aligned_cols=75 Identities=9% Similarity=0.006 Sum_probs=0.0
Q ss_pred EEEccCCCCCCceEEechHHHHHHHHHHHHHhCCCCCCEEEEcCcchhhHHHHHHHHHHhHcCcEEEEcC-----CCCHH
Q psy8155 378 YIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK-----KFSAS 452 (617)
Q Consensus 378 ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~L~~G~~lvi~~-----~~d~~ 452 (617)
+++|+|+|. .+......+ +.++|.++...+-+|.... ...+-..|..++..+ ..|++
T Consensus 77 v~~~~gg~~--------------al~~~~~~~-~~~gd~vl~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~d~~ 138 (393)
T 3kgw_A 77 LVVSGSGHC--------------AMETALFNL-LEPGDSFLTGTNGIWGMRA---AEIADRIGARVHQMIKKPGEHYTLQ 138 (393)
T ss_dssp EEESCCTTT--------------HHHHHHHHH-CCTTCEEEEEESSHHHHHH---HHHHHHTTCEEEEEECCTTCCCCHH
T ss_pred EEEeCCcHH--------------HHHHHHHhc-CCCCCEEEEEeCCchhHHH---HHHHHHcCCceEEEeCCCCCCCCHH
Q ss_pred HHHHHHHHcCCcEEeecH
Q psy8155 453 NYFSDVCKYKCTVGQYIG 470 (617)
Q Consensus 453 ~l~~~i~~~~vt~~~~~P 470 (617)
.+.+.+.++++..+.+++
T Consensus 139 ~l~~~i~~~~~~~v~~~~ 156 (393)
T 3kgw_A 139 EVEEGLAQHKPVLLFLVH 156 (393)
T ss_dssp HHHHHHHHHCCSEEEEES
T ss_pred HHHHHHhhCCCcEEEEec
Done!