RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8155
(617 letters)
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 397 bits (1021), Expect = e-133
Identities = 166/337 (49%), Positives = 204/337 (60%), Gaps = 45/337 (13%)
Query: 231 NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINH 290
+ WT +++ YSN+VANFF AQG + GD VAL +ENR EFV LWLGL+K+GV TALIN
Sbjct: 1 DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS 60
Query: 291 NLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQ 350
NLR SLLHCI ++ A I+
Sbjct: 61 NLRLESLLHCITVSKAKALIF--------------------------------------N 82
Query: 351 ALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG 410
L PLL++ T PPS V +DKL YIYTSGTTGLPKAAVI + RYY + Y G
Sbjct: 83 LLDPLLTQSSTEPPSQD-DVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFG 141
Query: 411 FRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIG 470
R +D Y LPLYH+AGG M +GQAL+ G VVIRKKFSASN++ D KY CT+ QYIG
Sbjct: 142 MRPEDVVYDCLPLYHSAGGIMGVGQALLHGSTVVIRKKFSASNFWDDCVKYNCTIVQYIG 201
Query: 471 EMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILD 530
E+CRYLL+ P E++ HNVRL GNGLRPQIW +FV RF I QIGEFYGATEG +++++
Sbjct: 202 EICRYLLAQPPSEEEQKHNVRLAVGNGLRPQIWEQFVRRFGIPQIGEFYGATEGNSSLVN 261
Query: 531 INKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTG 567
I+ V A G + P IR ++ E TG
Sbjct: 262 IDNH--VGAC--GFNSRILPSVYP--IRLIKVDEDTG 292
Score = 152 bits (386), Expect = 4e-40
Identities = 54/98 (55%), Positives = 73/98 (74%)
Query: 1 NANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIG 60
N+++ NIDN GA GF SR++P++YPI +I+VD T E IR+ GLC C+PGEPG+ +G
Sbjct: 256 NSSLVNIDNHVGACGFNSRILPSVYPIRLIKVDEDTGELIRDSDGLCIPCQPGEPGLLVG 315
Query: 61 KIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLS 98
KI+ ++P R + GYVNE + KKI DVF+ GDSAFLS
Sbjct: 316 KIIQNDPLRRFDGYVNEGATNKKIARDVFKKGDSAFLS 353
Score = 123 bits (311), Expect = 3e-30
Identities = 49/78 (62%), Positives = 59/78 (75%), Gaps = 3/78 (3%)
Query: 108 KKGLCSRC---EPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLL 164
GLC C EPG+ +GKI+ ++P R + GYVNE + KKI DVF+ GDSAFLSGD+L
Sbjct: 298 SDGLCIPCQPGEPGLLVGKIIQNDPLRRFDGYVNEGATNKKIARDVFKKGDSAFLSGDVL 357
Query: 165 VMDKWGYLYFKDRTGDTF 182
VMD+ GYLYFKDRTGDTF
Sbjct: 358 VMDELGYLYFKDRTGDTF 375
Score = 87.1 bits (216), Expect = 4e-18
Identities = 35/60 (58%), Positives = 45/60 (75%)
Query: 524 GMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDP 583
GMAAI+D + +D+ S + K+LP YARP FIR L EV+ TGT+KL+K DLQKEG+DP
Sbjct: 415 GMAAIVDPERKVDLDRFSAVLAKSLPPYARPQFIRLLPEVDKTGTFKLQKTDLQKEGYDP 474
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 395 bits (1016), Expect = e-130
Identities = 137/338 (40%), Positives = 188/338 (55%), Gaps = 4/338 (1%)
Query: 188 RALQRYLRFL-WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRV 246
L LR L A ++ D+F E A R P++ +FE+ + ++ A +NR
Sbjct: 16 PDLPGILRGLKRTALITPDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAELNARANRY 75
Query: 247 ANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGV 306
A++ A+G+ KGD VAL++ENRPE++ WLGL+KLG + AL+N R L H +N+
Sbjct: 76 AHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDA 135
Query: 307 SAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366
I G EL +A +E L W D+ P + L+ + PT+ P+
Sbjct: 136 KHLIVGEELVEAFEEARADL--ARPPRLWVAGGDTLDDP-EGYEDLAAAAAGAPTTNPAS 192
Query: 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT 426
V +D YIYTSGTTGLPKAAV+S+ R+ G + D Y LPLYH
Sbjct: 193 RSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHN 252
Query: 427 AGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDK 486
GG + L G + +R+KFSAS ++ DV +Y+ T QYIGE+CRYLL+ P KP D+
Sbjct: 253 TGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDR 312
Query: 487 AHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEG 524
H +RLM GNGLRP IW EF RF I +I EFY A+EG
Sbjct: 313 DHRLRLMIGNGLRPDIWDEFQQRFGIPRILEFYAASEG 350
Score = 114 bits (289), Expect = 7e-27
Identities = 44/96 (45%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 524 GMAAI-LDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFD 582
GMAAI L D++A++ + + LP+YA PLF+R + E+E TGT+K +K+DL+KEGFD
Sbjct: 505 GMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFD 564
Query: 583 PNVIQDRLYYLSSK-GVYEELTPEVYKDLVQGNIRL 617
P+ + D LY L G Y LT E+Y ++ G RL
Sbjct: 565 PSKVDDPLYVLDPGSGGYVPLTAELYAEIAAGKFRL 600
Score = 98.8 bits (247), Expect = 1e-21
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 1 NANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIG 60
N N+ N G +G V + P +I++ D T EP+R+ G C + +PGE G+ IG
Sbjct: 351 NVGFINVFNFDGTVGRVPLWLAH--PYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIG 408
Query: 61 KIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAF 96
+I P + GY + + S KKI+ DVF+ GD+ F
Sbjct: 409 RITDRGP---FDGYTDPEASEKKILRDVFKKGDAWF 441
Score = 86.5 bits (215), Expect = 1e-17
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 107 NKKGLCSRC---EPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDL 163
+ G C + E G+ IG+I P + GY + + S KKI DVF+ GD+ F +GDL
Sbjct: 390 DADGRCIKVKPGEVGLLIGRITDRGP---FDGYTDPEASEKKILRDVFKKGDAWFNTGDL 446
Query: 164 LVMDKWGYLYFKDRTGDTF 182
+ D +G+ F DR GDTF
Sbjct: 447 MRDDGFGHAQFVDRLGDTF 465
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 293 bits (753), Expect = 4e-92
Identities = 127/295 (43%), Positives = 168/295 (56%), Gaps = 12/295 (4%)
Query: 235 TAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
T +V+ SN+VA LA GLK GD+VAL+L N P F+ +WLGL+KLG TA +N N+R
Sbjct: 5 TYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIR 64
Query: 294 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS-NVKLFSWSPDTDSSSSPVPRSQAL 352
SLLHC G + EL +AV+EI +L + V++F S SP +L
Sbjct: 65 SGSLLHCFRCCGARVLVADPELLEAVEEILPALRAMGVRVFYLSHT-----SPPEGVISL 119
Query: 353 SPLLSEVPTSPPSLSYRVGV--QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI- 409
+ P S R GV + +YIYTSGTTGLPKAA IS+ R L + +
Sbjct: 120 LAKVDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLR--VLQCSGMLSLC 177
Query: 410 GFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYI 469
G D YT LPLYH++G + I + G +V++ KFSAS ++ D KY TV QYI
Sbjct: 178 GVTADDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNVTVFQYI 237
Query: 470 GEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEG 524
GE+ RYL + P+ D+ H VRL GNGLRP +W EF+ RF + E Y +TEG
Sbjct: 238 GELLRYLCNQPQSDNDRDHKVRLAIGNGLRPDVWREFLRRFGPIHVWETYASTEG 292
Score = 82.4 bits (204), Expect = 2e-16
Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 107 NKKGLC---SRCEPGVFIGKIVPSNPARAYLGYV-NEKDSAKKIFTDVFEIGDSAFLSGD 162
+ +G C + EPG+ I KI +P +LGY + + KK+ DVF+ GD F +GD
Sbjct: 334 DAQGFCIPVGKGEPGLLISKITSQSP---FLGYAGPRELTEKKLLRDVFKKGDVYFNTGD 390
Query: 163 LLVMDKWGYLYFKDRTGDTF 182
LLV D+ +LYF DRTGDTF
Sbjct: 391 LLVQDRQNFLYFHDRTGDTF 410
Score = 82.1 bits (203), Expect = 2e-16
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 3 NIA--NIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIG 60
NI N + GA+G S L + P +I+ D EP+R+ +G C GEPG+ I
Sbjct: 293 NIGFINYTGRVGAVGRASCLYKLLSPFELIKYDVEKDEPVRDAQGFCIPVGKGEPGLLIS 352
Query: 61 KIVPSNPARAYLGYV-NEKDSAKKIVTDVFEIGDSAF 96
KI +P +LGY + + KK++ DVF+ GD F
Sbjct: 353 KITSQSP---FLGYAGPRELTEKKLLRDVFKKGDVYF 386
Score = 77.4 bits (191), Expect = 6e-15
Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 524 GMAA-ILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFD 582
GMAA IL D+ + + +++ LP+YARP F+R +E+TGT+K +K+ L +EGF+
Sbjct: 450 GMAAVILKPGTEFDLEKLYQHVREFLPAYARPRFLRIQDSMEVTGTFKQQKVRLVEEGFN 509
Query: 583 PNVIQDRLYYL-SSKGVYEELTPEVY 607
P++I D LY+L + + Y LT E+Y
Sbjct: 510 PSIISDPLYFLDNREKSYVPLTQEIY 535
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 284 bits (728), Expect = 2e-89
Identities = 105/296 (35%), Positives = 145/296 (48%), Gaps = 62/296 (20%)
Query: 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 292
+ + A++NR A+ A G+KKGD VAL++ENRPE++ WL L+KLG + A
Sbjct: 3 RLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAA------ 56
Query: 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 352
IN G L + +S +
Sbjct: 57 -------LINTT-----QRGEVLAHCIN-VSDA--------------------------- 76
Query: 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFR 412
R + D YIYTSGTTGLPKAA++S+ R+ G +
Sbjct: 77 ----------------RAVIVDPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLK 120
Query: 413 TKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEM 472
D Y LPLYH+ + AL G + +R+KFSAS ++ DV +Y T QY+GE+
Sbjct: 121 PDDVLYLCLPLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGEL 180
Query: 473 CRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
CRYLL+ PEKP+D+ H +R + GNGLRP IW EF +RF + +I EFYG+TEG
Sbjct: 181 CRYLLNQPEKPDDRDHPLRKIIGNGLRPDIWDEFKERFGVPRIVEFYGSTEGNVGF 236
Score = 91.9 bits (229), Expect = 1e-19
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 1 NANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIG 60
N N+ N+PGA+G + I++++ D T EPIR+ G C + PGE G+ +G
Sbjct: 233 NVGFINLFNKPGAVGRLPP-----AAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLG 287
Query: 61 KIVPSNPARAYLGYVNEKDSAKKIVTDVFEIGDSAFLS 98
+I + GY +++ + KKI+ DVF+ GD+ F +
Sbjct: 288 EI---TDRNPFDGYTDDEATEKKILRDVFKKGDAYFNT 322
Score = 87.3 bits (217), Expect = 3e-18
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 106 YNKKGLCSRC---EPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGD 162
+ G C + E G+ +G+I + GY +++ + KKI DVF+ GD+ F +GD
Sbjct: 268 RDANGFCIKVPPGEVGLLLGEI---TDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTGD 324
Query: 163 LLVMDKWGYLYFKDRTGDTF 182
L+ D +GY YF DR GDTF
Sbjct: 325 LVRRDGFGYFYFVDRLGDTF 344
Score = 78.4 bits (194), Expect = 2e-15
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 524 GMAAI-LDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFD 582
GMAA+ L + D A + + + LP+YARPLF+R +E TGT+K +K DL+KEGFD
Sbjct: 384 GMAALTLAPGAAFDPQAFAAHLDEQLPAYARPLFLRVQAAMETTGTFKYQKTDLRKEGFD 443
Query: 583 P 583
P
Sbjct: 444 P 444
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 240 bits (613), Expect = 2e-72
Identities = 103/306 (33%), Positives = 142/306 (46%), Gaps = 60/306 (19%)
Query: 229 FENTEWTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITAL 287
FE WT + R A++ + ++ GD VA+ N EFV LWL L +G + A
Sbjct: 1 FEGKTWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAF 60
Query: 288 INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVP 347
IN+NL + L+HC+ I S K PD
Sbjct: 61 INYNLSGDPLIHCLKI------------------------SGAKFVIVDPD--------- 87
Query: 348 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY 407
D IYTSGTTGLPK IS R +++
Sbjct: 88 --------------------------DPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSH 121
Query: 408 QIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQ 467
+ + DR YT +PLYH + + L G + + +KFSAS ++ DV + T+ Q
Sbjct: 122 DLNLQFPDRTYTCMPLYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQ 181
Query: 468 YIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAA 527
Y+GE+CRYLL+TP P D+ H VR+ +GNGLRP IW F +RF + +IGEFY ATEG+ A
Sbjct: 182 YVGELCRYLLATPPSPYDRDHKVRVAYGNGLRPDIWERFRERFNVPEIGEFYAATEGVFA 241
Query: 528 ILDINK 533
+ N
Sbjct: 242 FTNHNV 247
Score = 75.6 bits (186), Expect = 2e-14
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 107 NKKGLCSRC---EPGVFIGKIVPSNPARAYLGYV-NEKDSAKKIFTDVFEIGDSAFLSGD 162
K G C R EPG +G++ N + GY+ NE + K+ DVF GD + +GD
Sbjct: 286 PKTGFCVRAPVGEPGEMLGRVRFKNRE-LFQGYLKNEDATESKLLRDVFRKGDIWYRTGD 344
Query: 163 LLVMDKWGYLYFKDRTGDTF 182
LL D G YF DR GDTF
Sbjct: 345 LLRQDADGRWYFLDRLGDTF 364
Score = 62.1 bits (151), Expect = 4e-10
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 12 GAIGFVSRLIPTIYP--ISIIRVDPVTSEPIR-NKKGLCTRCEPGEPGVFIGKIVPSNPA 68
GAIGF + + ++++DP T PIR K G C R GEPG +G++ N
Sbjct: 253 GAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVRFKNRE 312
Query: 69 RAYLGYV-NEKDSAKKIVTDVFEIGDSAFLS 98
+ GY+ NE + K++ DVF GD + +
Sbjct: 313 -LFQGYLKNEDATESKLLRDVFRKGDIWYRT 342
Score = 51.3 bits (123), Expect = 9e-07
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 545 KKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDP 583
+K LPSYA PLF+R EV TG +K +K L+KEG DP
Sbjct: 430 RKRLPSYAVPLFLRLTEEVATTGNHKQQKGVLRKEGVDP 468
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 203 bits (519), Expect = 4e-59
Identities = 84/297 (28%), Positives = 126/297 (42%), Gaps = 63/297 (21%)
Query: 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 292
+T ++ NR+A LA G++ GD VALML+N PEF+ W L+KLG + IN L
Sbjct: 3 RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62
Query: 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 352
R L H ++ +G + D + TS G+
Sbjct: 63 RGEELAHILDHSGARLIV-----VDTAAILYTS-GT------------------------ 92
Query: 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFR 412
T PP K ++++ + F A +G R
Sbjct: 93 --------TGPP------------------------KGVLLTHAQLLFAARLAARLLGLR 120
Query: 413 TKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEM 472
D TPLPL+H A + AL+ G +V+ +FSAS ++ V K+ TV +G M
Sbjct: 121 PDDVLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAM 180
Query: 473 CRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL 529
L+ P P+D+ H +R +FG L IW F +RF + ++ E YG TE I+
Sbjct: 181 AAILMKQPPSPDDRDHPLRFVFGAPLPAAIWPAFEERFGV-KLVEGYGMTETGVPII 236
Score = 32.5 bits (75), Expect = 0.60
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 158 FLSGDLLVMDKWGYLYFKDRTGD 180
F +GD D+ G+LYF DR D
Sbjct: 304 FHTGDRGRRDEDGFLYFVDRKKD 326
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 203 bits (519), Expect = 3e-58
Identities = 93/327 (28%), Positives = 145/327 (44%), Gaps = 16/327 (4%)
Query: 207 DLTIADIFREHAVRSPNKVIFMF--ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALM 264
+LT+A + A R+P++ +F T ++++ +NR+A A G+K GD VA++
Sbjct: 10 ELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAIL 69
Query: 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIST 324
L N PEF+ +L + G + +N L L + +N AG I AE ++ ++
Sbjct: 70 LPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAE 129
Query: 325 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 384
+L + + + L L +E P V D +YTSGT
Sbjct: 130 ALPVVLVV------LLVGDADDRLPITLEALAAEGPGPDADAR-PVDPDDLAFLLYTSGT 182
Query: 385 TGLPKAAVIS--NHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC 442
TGLPK V++ N G A A G D + LPL+H G + + L+ G
Sbjct: 183 TGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGT 242
Query: 443 VVI--RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH-NVRLMFGNG-- 497
+V+ + F + KYK TV + R LL PEK +D ++RL+ G
Sbjct: 243 LVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAP 302
Query: 498 LRPQIWSEFVDRFRIAQIGEFYGATEG 524
L P++ F +RF I E YG TE
Sbjct: 303 LPPELLERFEERFGPIAILEGYGLTET 329
Score = 36.7 bits (85), Expect = 0.040
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 134 LGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTF 182
GY N ++ + F + D +GDL +D+ GYLY R D
Sbjct: 384 KGYWNRPEATAEAFDE-----DGWLRTGDLGYVDEDGYLYIVGRLKDLI 427
Score = 29.7 bits (67), Expect = 4.9
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 534 SLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFD 582
L + ++K L Y P + + E+ T + K+ + L++E
Sbjct: 479 ELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 200 bits (511), Expect = 5e-57
Identities = 102/330 (30%), Positives = 156/330 (47%), Gaps = 8/330 (2%)
Query: 199 AARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKG 258
A + + T+ + A R P++ + +F T WT + + A+ A G+K+G
Sbjct: 12 AVDPLPPSERTLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRG 71
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
D VALM NR EF+ ++LG + LG I IN LR L H + +G + A L A
Sbjct: 72 DRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAA 131
Query: 319 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY 378
++ + W D +S S VP + +PL P P+ + V D
Sbjct: 132 LEAADPGDLPLPAV--WLLDAPASVS-VPAGWSTAPL---PPLDAPAPAAAVQPGDTAAI 185
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
+YTSGTTG K + ++Y+ G A + D YT LPL+HT QAL+
Sbjct: 186 LYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFF-QALL 244
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGL 498
G V+ +FSAS ++ V ++ TV +G M LLS P + D+AH VR+ G G+
Sbjct: 245 AGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPGV 304
Query: 499 RPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
+ + F +RF + + + YG+TE I
Sbjct: 305 PAALHAAFRERFGVDLL-DGYGSTETNFVI 333
Score = 32.0 bits (73), Expect = 1.00
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 520 GATEGMAAI-LDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQK 578
G E MAA+ L +L+ A+ + L +A P ++ + + T K++K L++
Sbjct: 461 GEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLRE 520
Query: 579 EGFDPN 584
+G +
Sbjct: 521 QGVTAD 526
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 197 bits (502), Expect = 7e-57
Identities = 78/298 (26%), Positives = 123/298 (41%), Gaps = 13/298 (4%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T ++++ +NR+A A G+ GD VA++L N PE+V L + K G ++ +L
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354
L + + + I EL + E+ L + L
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLAL------IIVGDDGEGLDLLDDE 114
Query: 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTK 414
LL+ PP+ V D IYTSGTTG PK ++++ L +A + G
Sbjct: 115 LLAGASAEPPAPP--VDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPG 172
Query: 415 DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFS--ASNYFSDVCKYKCTVGQYIGEM 472
DR LP H G I L+ G +V+ KF+ + + KYK TV + +
Sbjct: 173 DRVLLLLP-LHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTL 231
Query: 473 CRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
R LL PE+ + ++RL+ G L P++ +RF + YG TE
Sbjct: 232 LRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVA 289
Score = 40.8 bits (96), Expect = 0.002
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 115 CEPGVFIGKIVPSNP--ARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYL 172
PG +G++ P AR YL + + +A++ D + + +GDL D+ GYL
Sbjct: 323 VPPGE-VGELCIRGPGVARGYLN--DPELTAERFVEDGW----GMYRTGDLGRWDEDGYL 375
Query: 173 YFKDRTGDTF 182
R D
Sbjct: 376 EILGRKDDQV 385
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 140 bits (355), Expect = 1e-35
Identities = 111/407 (27%), Positives = 173/407 (42%), Gaps = 57/407 (14%)
Query: 209 TIADIFREHAVRSPNKVIFMFEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVAL 263
+ ++ + A +K +FE+ ++ ++ NR AN F + G++KGD VAL
Sbjct: 8 HLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVAL 67
Query: 264 MLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE---LTDAV- 319
L+N PEF+ W GL+K+G I IN L + + + S + A+ + +
Sbjct: 68 HLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQ 127
Query: 320 QEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRV--GVQDKLI 377
QE +T L P D SS + L ++ P +L Y D
Sbjct: 128 QEDATPLRHICLTRVALPADDGVSS-------FTQLKAQ---QPATLCYAPPLSTDDTAE 177
Query: 378 YIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYH-----TAGGAMC 432
++TSGTT PK VI+++ F G A+Q R D + T +P +H TA AM
Sbjct: 178 ILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTA--AM- 234
Query: 433 IGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVR- 491
A G V+ +K+SA ++ VCKY+ T+ + I M R L+ P D+ H +R
Sbjct: 235 --AAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLRE 292
Query: 492 LMFGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSY 551
+MF L Q F +RF + ++ YG TE + I+ G K+ PS
Sbjct: 293 VMFYLNLSDQEKDAFEERFGV-RLLTSYGMTETIVGII---------GDRPGDKRRWPSI 342
Query: 552 ARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSSKGV 598
RP F Y+ + D I + + KGV
Sbjct: 343 GRPGF-----------CYEAEIRDDHNRPLPAGEIGE----ICIKGV 374
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 138 bits (350), Expect = 7e-35
Identities = 83/319 (26%), Positives = 137/319 (42%), Gaps = 10/319 (3%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
LTI I R A + P+K F+ T +++ NR+AN A G+KKGD VA+ N
Sbjct: 6 LTIGRILRHGARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWN 65
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 327
E++ + + K+G + IN L+ + + +N A + +E + I L
Sbjct: 66 SHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLP 125
Query: 328 SNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL 387
+ V+ D ++ P LL+ + + D +YTSGTTG
Sbjct: 126 T-VRTVIVEGDGPAAPLA-PEVGEYEELLAAASDTFDFP--DIDENDAAAMLYTSGTTGH 181
Query: 388 PKAAVISNHRYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446
PK V+S HR FL A+ + D + +P++H + AL+ G VI
Sbjct: 182 PKGVVLS-HRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPY-LALMAGAKQVIP 239
Query: 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWS 504
++F N + + T + + + LL P ++RL+ G L P +
Sbjct: 240 RRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLR 299
Query: 505 EFVDRFRIAQIGEFYGATE 523
EF ++F I + + YG TE
Sbjct: 300 EFKEKFGI-DLVQGYGMTE 317
Score = 31.3 bits (72), Expect = 1.8
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 121 IGKIVPSNPARAYLGYVN-EKDSAKKIFTDVFEIGDSAFL-SGDLLVMDKWGYLYFKDRT 178
+G+I+ P GY N + +A+ I D +L +GD+ +D+ GYLY DR
Sbjct: 367 VGEIIVRGPWLM-QGYWNRPEATAETI--------DGGWLHTGDVGYIDEDGYLYITDRI 417
Query: 179 GD 180
D
Sbjct: 418 KD 419
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 126 bits (319), Expect = 3e-31
Identities = 86/322 (26%), Positives = 132/322 (40%), Gaps = 52/322 (16%)
Query: 210 IADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP 269
+AD+ A R P++ F + T +++ S+R A + G+KKGD VALML N P
Sbjct: 1 LADLLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCP 60
Query: 270 EFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN 329
+F + G+ K G + +N L H +N +G I DA+
Sbjct: 61 QFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDALASG------- 113
Query: 330 VKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK 389
+PL V SP D + YT GTTG+PK
Sbjct: 114 -----------------------APLPLPVELSP---------DDLAVLQYTGGTTGVPK 141
Query: 390 AAVISNHRYYFLGGAIAYQI-----GFRT-KDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443
A+++ HR A QI R +DRF T LPL+H G + + L G
Sbjct: 142 GAMLT-HRNLV---ANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNMLLGLRLGATN 197
Query: 444 VIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQ 501
V+ F N ++ +Y+ T+ + + LL+ PE + ++RL G L +
Sbjct: 198 VLVPNFRPINVLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVE 257
Query: 502 IWSEFVDRFRIAQIGEFYGATE 523
+ F ++ A + E YG TE
Sbjct: 258 VAERFEEKTG-APLVEGYGLTE 278
Score = 33.6 bits (78), Expect = 0.35
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 135 GYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDR 177
GY N + ++ TD + +GD+ MD+ GY Y DR
Sbjct: 334 GYWNRPEETAEVLTDGW------LRTGDIGYMDEDGYFYIVDR 370
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 125 bits (317), Expect = 1e-30
Identities = 93/328 (28%), Positives = 147/328 (44%), Gaps = 35/328 (10%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDS---VALML 265
TIA + R+ A + + + + WT ++V A + A L D V ++L
Sbjct: 4 TIAQLLRDRA--GDDTIAVRYGDRTWTWREVLAEAAARAA--ALIALADPDRPLHVGVLL 59
Query: 266 ENRPEFVCLWLGLSKLGVITAL-INHNLRQNSLLHCINIAGVSAFIYGAE---LTDAVQE 321
N PE + WL + LG + +N R +L I A + AE L D +
Sbjct: 60 GNTPEML-FWLAAAALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDL 118
Query: 322 ISTSLGSNVKLFSWSPDTDSSSSPVPR-SQALSPLLSEVPTSPPSLSYRVGVQDKLIYIY 380
V++ D D+ P ++ ++ + P V D + I+
Sbjct: 119 ------PGVRVL----DVDT-----PAYAELVAAAGALTPHRE------VDAMDPFMLIF 157
Query: 381 TSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440
TSGTTG PKA S+ R F G A+ + G D Y +PL+H+ A+ G
Sbjct: 158 TSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASG 217
Query: 441 CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRP 500
V + KFSAS + DV +Y T Y+G+ Y+L+TPE+P+D + +R+ FGN P
Sbjct: 218 AAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVAFGNEASP 277
Query: 501 QIWSEFVDRFRIAQIGEFYGATEGMAAI 528
+ +EF RF Q+ + YG++EG +
Sbjct: 278 RDIAEFSRRFG-CQVEDGYGSSEGAVIV 304
Score = 35.4 bits (82), Expect = 0.10
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 121 IGKIVPSNPARAYLGYVNEKDS-AKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTG 179
IG++V + A + GY N ++ A+++ + SGDL D G++YF RT
Sbjct: 351 IGELVNTAGAGFFEGYYNNPEATAERM-------RHGMYWSGDLAYRDADGWIYFAGRTA 403
Query: 180 D 180
D
Sbjct: 404 D 404
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 124 bits (312), Expect = 5e-30
Identities = 76/269 (28%), Positives = 126/269 (46%), Gaps = 20/269 (7%)
Query: 261 VALMLENRPEFVCLWLGLSKL-GVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAV 319
V ++L+N PEF L LG + L G++ +N R +L I A + + + +
Sbjct: 57 VGVLLDNTPEFS-LLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELL 115
Query: 320 QEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI 379
L V++ + DS A + L+ + P D + I
Sbjct: 116 D----GLDPGVRVI----NVDS--------PAWADELAAHRDAEPPFR-VADPDDLFMLI 158
Query: 380 YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIF 439
+TSGT+G PKA ++ + G +A + G D Y +PL+H+ AL
Sbjct: 159 FTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAA 218
Query: 440 GCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLR 499
G + +R+KFSAS + DV +Y T Y+G+ Y+L+TPE+P+D + +R+++GN
Sbjct: 219 GASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEGA 278
Query: 500 PQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
P + F RF + + +G+TEG AI
Sbjct: 279 PGDIARFARRFGCVVV-DGFGSTEGGVAI 306
Score = 38.5 bits (90), Expect = 0.009
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 17/79 (21%)
Query: 113 SRCEPGVF-----------IGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSG 161
+ C P IG++V + + GY N+ ++ D + + SG
Sbjct: 333 TECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEA------DAERMRGGVYWSG 386
Query: 162 DLLVMDKWGYLYFKDRTGD 180
DL D GY YF R GD
Sbjct: 387 DLAYRDADGYAYFAGRLGD 405
Score = 29.3 bits (66), Expect = 6.7
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 525 MAAI-LDINKSLDVSAVSEGI--KKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF 581
MAA+ L D A +E + + L P ++R E+ T T+K+ K L EG
Sbjct: 447 MAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGV 506
Query: 582 D 582
D
Sbjct: 507 D 507
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 121 bits (306), Expect = 4e-29
Identities = 67/235 (28%), Positives = 95/235 (40%), Gaps = 20/235 (8%)
Query: 199 AARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKG 258
ARR TI DI R A R P+K +F + WT +++A NRVA L GLKKG
Sbjct: 7 RARRQ-----TIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKG 61
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
D VA + N + LWL ++ G + +N L L + ++ +G AF+ L
Sbjct: 62 DRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPT 121
Query: 319 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY 378
+ L V S +P + + P + D L
Sbjct: 122 AEAALALLP--VDTLILSLVLGGREAP-GGWLDFADWAEAGSVAEPDVELA---DDDLAQ 175
Query: 379 I-YTSGTTGLPKAAVISN----HRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG 428
I YTSGT LPK A++++ Y + +A D LPLYH A
Sbjct: 176 ILYTSGTESLPKGAMLTHRALIAEY--VSCIVA--GDMSADDIPLHALPLYHCAQ 226
Score = 33.4 bits (77), Expect = 0.35
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 117 PGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKD 176
PG +G+IV +P + LGY ++ + + F + F SGDL VMD+ GY+ D
Sbjct: 364 PGE-VGEIVHRSP-QLMLGYWDDPEKTAEAFRGGW------FHSGDLGVMDEEGYITVVD 415
Query: 177 RTGD 180
R D
Sbjct: 416 RKKD 419
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 121 bits (305), Expect = 5e-29
Identities = 86/342 (25%), Positives = 140/342 (40%), Gaps = 25/342 (7%)
Query: 190 LQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANF 249
LR RR A + A R+P++ + E T +++ SN +A
Sbjct: 35 PDNGLRLAADIRRYG----PFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARG 90
Query: 250 FLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAF 309
LA G++ GD VA++ N FV K+G L+N L GV A
Sbjct: 91 LLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSGPQLAEVAAREGVKAL 150
Query: 310 IYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYR 369
+Y E TD + + LG +L +W + D + L L++ T+P +
Sbjct: 151 VYDDEFTDLLSALPPDLG---RLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAPLPKPPK 207
Query: 370 VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGG 429
G I I TSGTTG PK A + ++ FR + P P++H G
Sbjct: 208 PGG----IVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGW 263
Query: 430 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDK--A 487
A + A+ G VV+R++F D+ K+K T + M +L + K
Sbjct: 264 A-HLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDT 322
Query: 488 HNVRLMF--GNGLRPQIWSEFVDRFRIAQIGE----FYGATE 523
+++++F G+ L P++ + ++ F G YG+TE
Sbjct: 323 SSLKIIFVSGSALSPELATRALEAF-----GPVLYNLYGSTE 359
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 118 bits (299), Expect = 3e-28
Identities = 76/334 (22%), Positives = 119/334 (35%), Gaps = 42/334 (12%)
Query: 220 RSPNKVIFMFENTE-----WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCL 274
P+ +F+ + T + R+AN G KGD VA+ + N PE V
Sbjct: 22 DRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIA 81
Query: 275 WLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFS 334
L +++G I A+++ L ++ I G I +EI +
Sbjct: 82 LLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEI------ALL--- 132
Query: 335 WSPDTDSSSSPVPRSQ-ALSPLLSEVPTSPPSLSY-RVGVQDKLIYIYTSGTTGLPKAAV 392
D D+ S V V + + + D L +YTSGTTG PK V
Sbjct: 133 --EDADAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIV 190
Query: 393 ISNHRYYFLGGAIAYQIGFRTK--DRFYTPLPLYHTAGGAMCIGQALIFGCCVVI---RK 447
S H Y + + + DRF+ G + L G V+ R
Sbjct: 191 HS-HGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRP 249
Query: 448 KFSASNYFSDVCKYKCTVGQYIGEMC------RYLLSTPE-KPEDKAHNVRLMFGNG--L 498
+S + + KYK T+ R L+ +P D + +R++ G L
Sbjct: 250 FYSPERLWEALEKYKVTI------FGTSPTFLRRLMKLGLGEPYDLSS-LRVLGSAGEPL 302
Query: 499 RPQIWSEFVDRFRIAQIGEFYGATE-GMAAILDI 531
P+ + F + I + YG TE GM I
Sbjct: 303 NPEAFEWFYSALGV-WILDIYGQTETGMGFIAGR 335
Score = 28.8 bits (65), Expect = 9.3
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 115 CEPGVFIGKIVPSNPARA-YLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLY 173
PGV G++V P L Y N+ + K+ + + + +GD D+ GY +
Sbjct: 362 VPPGV--GELVVRLPWPGMALTYWNDPERYKEAYFGRW------YRTGDWAERDEDGYFW 413
Query: 174 FKDRTGDTFPALKSR 188
R+ D R
Sbjct: 414 LHGRSDDVIKVSGKR 428
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 116 bits (292), Expect = 1e-27
Identities = 84/307 (27%), Positives = 126/307 (41%), Gaps = 15/307 (4%)
Query: 231 NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINH 290
TE T + + R+A GLK+GD VAL+ N EF ++LG G I + N
Sbjct: 8 GTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANP 67
Query: 291 NLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQ 350
+ + L H + I+ + D V+E + LG V++ DS+ V R +
Sbjct: 68 SYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIV----LDSAPDGVLRIE 123
Query: 351 AL--SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY---YFLGGAI 405
L L +E P L G D +Y+SGTTGLPK ++S+
Sbjct: 124 DLLEPRLGAEDEFRPTPL--IDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDT 181
Query: 406 AYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
+ D T LP YH G + L G V+I KF + + + KYK T
Sbjct: 182 LKGNPDSSNDVVLTFLPFYHAYGLTTTLASLL-CGATVIIMPKFDSETFLKLIEKYKVTS 240
Query: 466 GQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
+ + L +P + ++R++F L ++ E RF I + YG TE
Sbjct: 241 LFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTE 300
Query: 524 -GMAAIL 529
G A L
Sbjct: 301 TGPATTL 307
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 109 bits (275), Expect = 2e-25
Identities = 71/326 (21%), Positives = 118/326 (36%), Gaps = 51/326 (15%)
Query: 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
D T+ D+ +A R P++ + T ++++A +R+A LA G+ GD V + L
Sbjct: 13 GDQTLGDLLAANAARHPDRTAVVDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQL 72
Query: 266 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 325
N EFV L+ L KLG I L R + + H + A+I
Sbjct: 73 PNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSEAKAYI--------------- 117
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 385
D S ++ LL E+P D ++ + GTT
Sbjct: 118 ----------IADRFSGFDYAALAR---ELLEELP-------------DVALFQLSGGTT 151
Query: 386 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTA----GGAMCIGQALIFGC 441
GLPK +++ Y + A A G + LP H G + AL+ G
Sbjct: 152 GLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPGLLG---ALLAGG 208
Query: 442 CVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQ 501
VV+ S F + + K T + + L E + ++R++ G
Sbjct: 209 TVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQVGGAPLS 268
Query: 502 IWS--EFVDRFRIAQIGEFYGATEGM 525
+R + + +G EG+
Sbjct: 269 PELARRVEERLGC-PLQQVFGMAEGL 293
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 105 bits (265), Expect = 6e-25
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 12/163 (7%)
Query: 374 DKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 433
D +YTSGTTG PK V+S+ A+A IG D + LPL+H GG +
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 434 GQALIFGCCVVIRKKFS-ASNYFSDVCKYKCT----VGQYIGEMCRYLLSTPEKPEDKAH 488
AL+ G VV+ + F ++ + +Y+ T V L E
Sbjct: 61 LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLY----DALAKAAEDRGYDLS 116
Query: 489 NVRLMFGNG--LRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL 529
++RL+ G L P++ F +R I E YG TE
Sbjct: 117 SLRLLISGGEPLSPELLERFEERPGA-PILEGYGLTETSVVTS 158
Score = 44.6 bits (106), Expect = 8e-05
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 112 CSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGY 171
PG +G++V P GY N T D + +GDL +D+ GY
Sbjct: 187 GKPLPPG-EVGELVVRGPWVM-KGYWNNPPE-----TTAAATEDGWYRTGDLGYLDEEGY 239
Query: 172 LYFKDRTGDTF 182
LY R+ D
Sbjct: 240 LYITGRSKDLI 250
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 103 bits (260), Expect = 2e-23
Identities = 72/275 (26%), Positives = 114/275 (41%), Gaps = 40/275 (14%)
Query: 225 VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284
VI T ++EA SNR+A+ A GL++GD VA++LEN PEF ++ + G+
Sbjct: 3 VIMAPSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLY 62
Query: 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSS 344
IN +L + + ++ +G I A L D E++ L + V L +
Sbjct: 63 YTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLL------VVAG 116
Query: 345 PVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK--------------- 389
PVP ++ L+ P +P + +Y+SGTTG PK
Sbjct: 117 PVPGFRSYEEALAAQPDTPIADETAGAD-----MLYSSGTTGRPKGIKRPLPGLDPDEAP 171
Query: 390 --AAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447
+ Y ++ +P PLYHTA AL G VV+ +
Sbjct: 172 GMMLALLGFGMYGGPDSVY-----------LSPAPLYHTAPLRFG-MSALALGGTVVVME 219
Query: 448 KFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEK 482
KF A + + +Y+ T Q + M +L PE+
Sbjct: 220 KFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEE 254
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 100 bits (252), Expect = 2e-22
Identities = 73/300 (24%), Positives = 118/300 (39%), Gaps = 30/300 (10%)
Query: 207 DLTIADIFREHAVRS-PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
IAD+F E + P++V + + T ++E +NR+A++ +AQGL GD V +
Sbjct: 2 AWNIADLF-EAVADAVPDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYA 60
Query: 266 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 325
NR E+V LG K + +N+ ++ L + ++ + A +Y E V E+
Sbjct: 61 RNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPR 120
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 385
L ++ D S + +P + L+ R D L +YT GTT
Sbjct: 121 L-PKLRTLVVVED-GSGNDLLPGAVDYEDALAAGSPERDFGE-RSP--DDLYLLYTGGTT 175
Query: 386 GLPKAAVISNHRYYF-LGGAIA----------YQIGFRTKDRFYTPL----PLYHTAG-- 428
G+PK + + L G ++ R PL H AG
Sbjct: 176 GMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQW 235
Query: 429 GAMCIGQALIFGCCVVI--RKKFSASNYFSDVCKYKCTVGQYIGE-MCRYLLSTPEKPED 485
A AL G VV+ +F A + + + K V +G+ M R LL E
Sbjct: 236 AAF---AALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGP 292
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 99.2 bits (247), Expect = 6e-22
Identities = 71/309 (22%), Positives = 131/309 (42%), Gaps = 32/309 (10%)
Query: 222 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSK 280
P+++ + E E T +Q+ Y ++VA + + + +KKG+ +A++ +N E++ L ++K
Sbjct: 16 PDRIAIITEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAK 75
Query: 281 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTD 340
+ I +N L +N L+ + +G + + +
Sbjct: 76 VECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKV--------------- 120
Query: 341 SSSSPVPRSQALSPLLSEVPTS--PPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY 398
S V +L + + + S I YTSGTTG PK AV++
Sbjct: 121 SYVQRVISITSLKEIEDRKIDNFVEKNES------ASFIICYTSGTTGKPKGAVLTQENM 174
Query: 399 YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDV 458
++ + I DR LPL+H G + L G +++ +KF + S +
Sbjct: 175 FWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMI 234
Query: 459 CKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRP---QIWSEFVDR-FRIAQ 514
K+K TV + + + L++ + +VR F NG P ++ EF+DR F
Sbjct: 235 EKHKVTVVMGVPTIHQALINCSKFETTNLQSVR-WFYNGGAPCPEELMREFIDRGFL--- 290
Query: 515 IGEFYGATE 523
G+ +G TE
Sbjct: 291 FGQGFGMTE 299
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 93.1 bits (232), Expect = 4e-20
Identities = 57/235 (24%), Positives = 102/235 (43%), Gaps = 33/235 (14%)
Query: 221 SPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK 280
+P++ FE + T ++ VA A G+KKGD VAL+++N E + + L +
Sbjct: 15 TPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQ 74
Query: 281 LGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTD 340
LG + L+N L + LL ++ A V I + + + ++
Sbjct: 75 LGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISVK--------FAE--- 123
Query: 341 SSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVI---SNHR 397
L P + + + +YTSGTTG PK VI NH
Sbjct: 124 ---------------LMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPK-GVIQTYGNHW 167
Query: 398 YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSAS 452
+ +G A+ +G D + +P++H +G ++ + +++I+G VV+ +KF A
Sbjct: 168 WSAVGSAL--NLGLTEDDCWLAAVPIFHISGLSI-LMRSVIYGMRVVLVEKFDAE 219
Score = 32.6 bits (75), Expect = 0.60
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 135 GYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 180
GY+N +D+ ++ F D + F +GD+ +D+ G+LY DR D
Sbjct: 345 GYLNREDATRETFQDGW------FKTGDIGYLDEEGFLYVLDRRSD 384
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 93.0 bits (232), Expect = 6e-20
Identities = 65/320 (20%), Positives = 117/320 (36%), Gaps = 10/320 (3%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
+T+ ++ A R +K ++F + T ++ A R A A G+ KGD VA+ N
Sbjct: 5 MTLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPN 64
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 327
P +V LG K G + +N + + + A +T L
Sbjct: 65 SPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLP 124
Query: 328 S--NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 385
+ +V + D + + L+ P + V D ++TSGTT
Sbjct: 125 ALEHVVICETEEDDPHTEKMKTFTDFLAA------GDPAERAPEVDPDDVADILFTSGTT 178
Query: 386 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
G PK A++++ + A +G DR+ P +H G + L+ G ++
Sbjct: 179 GRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILP 238
Query: 446 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIW 503
F F + + TV M LL P++ + ++RL + +
Sbjct: 239 LPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALL 298
Query: 504 SEFVDRFRIAQIGEFYGATE 523
F + + YG +E
Sbjct: 299 ERFESELGVDIVLTGYGLSE 318
>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
Length = 994
Score = 93.6 bits (233), Expect = 1e-19
Identities = 85/348 (24%), Positives = 143/348 (41%), Gaps = 26/348 (7%)
Query: 213 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 272
I E A +P +F+ T + V N V +A G+++GD V +++E RP +
Sbjct: 452 IIAEQARDAPKGEFLLFDGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSAL 511
Query: 273 CLWLGLSKLGVITALINHNLRQNSLLH-CINIAGVSAFIYGAELTDAVQEISTSLGSNVK 331
LS+LG + L + ++ L + + GV+ I +A ++ L V
Sbjct: 512 VAIAALSRLGAVAVL----MPPDTDLAAAVRLGGVTEIITDPTNLEAARQ----LPGRVL 563
Query: 332 LFSWSPDTD---SSSSPVPRSQALSPLLSEVPTSPPSLSYR--VGVQDKLIYIYTSGTTG 386
+ D + V + + P E+P YR G+ L +I S G
Sbjct: 564 VLGGGESRDLDLPDDADVIDMEKIDPDAVELPGW-----YRPNPGLARDLAFIAFSTAGG 618
Query: 387 LPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446
A I+N+R+ A +D Y PL+H +G + +G A++ G + +
Sbjct: 619 ELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALS 678
Query: 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEF 506
+ + +V +Y TV Y M R ++ P H VRL G+G+ +W
Sbjct: 679 RGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFIGSGMPTGLWERV 738
Query: 507 VDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIK-KALPSYAR 553
V+ F A + EF+ T+G A + +VS G K + LP R
Sbjct: 739 VEAFAPAHVVEFFATTDGQAVL------ANVSGAKIGSKGRPLPGAGR 780
Score = 31.2 bits (71), Expect = 2.0
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
Query: 9 NQPGA-IGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNP 67
N GA IG R +P + + DP + + +G R E E GV + +
Sbjct: 762 NVSGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLAR------ 815
Query: 68 ARAYLGYVNEKDSAKKIVTDVFEIGDS 94
AR G ++ S K+ VF D+
Sbjct: 816 AR---GPIDPTASVKR---GVFAPADT 836
Score = 29.3 bits (66), Expect = 7.1
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 534 SLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYL 593
++ + ++E + +LP P + + E+ ++ TY+ L+ G P + Y+
Sbjct: 911 AITAADLTEALA-SLPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI-PKPGRQAWYFD 968
Query: 594 SSKGVYEELTPEVYKDL 610
Y LTP V +L
Sbjct: 969 PETNRYRRLTPAVRAEL 985
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 89.0 bits (221), Expect = 1e-18
Identities = 79/344 (22%), Positives = 135/344 (39%), Gaps = 26/344 (7%)
Query: 192 RYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFL 251
RYLR + A RR + F A R P++ + E T ++++ S+ +A
Sbjct: 30 RYLRIVAAMRRE---GMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQ 86
Query: 252 AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY 311
A + + V +M N FV L +++G L+N + +L + GV IY
Sbjct: 87 ALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPALAEVVTREGVDTVIY 146
Query: 312 GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT--SPPSLSYR 369
E + V ++ +W D D +L P
Sbjct: 147 DEEFSATVDRALADCPQATRIVAW-TDEDH--------DLTVEVLIAAHAGQRPE----P 193
Query: 370 VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGG 429
G + ++I + TSGTTG PK A S AI + +R ++ P++H G
Sbjct: 194 TGRKGRVI-LLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGF 252
Query: 430 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHN 489
+ + A C +V R++F + +++ T + M ++ P + ++
Sbjct: 253 SQ-LVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSG 311
Query: 490 VRLMF----GNGLRPQIWSEFVDRFRIAQIGEFYGATE-GMAAI 528
L F G+ +RP + F+D+F I Y ATE GM A
Sbjct: 312 RSLRFAAASGSRMRPDVVIAFMDQFGDV-IYNNYNATEAGMIAT 354
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 88.2 bits (219), Expect = 2e-18
Identities = 70/271 (25%), Positives = 106/271 (39%), Gaps = 31/271 (11%)
Query: 212 DIFREHAVRSPNKV--IFMFENTE---WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
D+ +A P+K+ I+ ++ E +T ++ YSN+ ANFF A G+ KGD+V L L+
Sbjct: 21 DVVDAYADEEPDKLALIWCDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLK 80
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE--LTDAVQEIST 324
R EF L L K+G I H L +++ I AG+ + E + + + E +
Sbjct: 81 RRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAP 140
Query: 325 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS--PPSLSYRVGVQDKLIYIYTS 382
GS L + P+ + D L+ +TS
Sbjct: 141 ECGSPTLLVLVGDP------VPEGWIDFDKEIENASPDFERPTGNDATCNDDILLVYFTS 194
Query: 383 GTTGLPKAAVISNHRYYFLGGAIA--YQIGFRTKDRFYTPLPLYHTAGGAMCI-----GQ 435
GTTG+PK V +H Y LG + Y + T G + GQ
Sbjct: 195 GTTGMPK-MVEHDHTYP-LGHIVTAKYWQNVKEGGLHLT----VADTGWGKAVWGKLYGQ 248
Query: 436 ALIFGCCVVI--RKKFSASNYFSDVCKYKCT 464
I G V + KF N + KY T
Sbjct: 249 -WIAGAAVFVYDYDKFDPKNLLEKIEKYGVT 278
Score = 30.9 bits (70), Expect = 2.3
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 112 CSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTD-VFEIGDSAFLSGDLLVMDKWG 170
C E G + + P ++GY + + +++ D + GD+A+ MD+ G
Sbjct: 374 CEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDTAW-------MDEDG 426
Query: 171 YLYFKDRTGD 180
YL+F R D
Sbjct: 427 YLWFVGRADD 436
Score = 30.5 bits (69), Expect = 3.3
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 18/96 (18%)
Query: 2 ANIANIDNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGK 61
A ++ +PG++G S Y I II D CE GE G + +
Sbjct: 343 ATFPWMEPKPGSMGKPS----PGYDIDIIDPDG-------------KSCEVGEEGEIVIR 385
Query: 62 IVPSNPARAYLGYVNEKDSAKKIVTD-VFEIGDSAF 96
P ++GY + + ++ D + GD+A+
Sbjct: 386 TSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDTAW 421
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 87.9 bits (218), Expect = 3e-18
Identities = 82/339 (24%), Positives = 137/339 (40%), Gaps = 21/339 (6%)
Query: 206 KDLTIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVAL 263
TI D F R P++ ++ + +T +Q+ +R+A LA G++ GD V +
Sbjct: 16 LTQTIGDAFDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGI 75
Query: 264 MLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY-----GAELTDA 318
N E++ +++G I IN R + L + + +GV I ++
Sbjct: 76 WAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAM 135
Query: 319 VQEISTSLGSNVKLFSWSPDTDS-------SSSPVPRSQALSPLLSEVPT-SPPSLSYRV 370
+QE+ L + +P P A L + T S +L+ R
Sbjct: 136 LQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQ 195
Query: 371 GVQDKLIYI---YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTA 427
D+ I YTSGTTG PK A +S+H G +A +G DR P+PLYH
Sbjct: 196 ASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCF 255
Query: 428 GGAMCIGQALIFGCCVVI-RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDK 486
G + + G C+V + F V + +CT + M L P++
Sbjct: 256 GMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFD 315
Query: 487 AHNVR--LMFGNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
++R +M G ++ +D +A++ YG TE
Sbjct: 316 LSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTE 354
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 87.1 bits (216), Expect = 5e-18
Identities = 78/331 (23%), Positives = 138/331 (41%), Gaps = 41/331 (12%)
Query: 217 HAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCL 274
HA +P+K VI T ++++ SNR+A+ F + GLK+GD VA+ +EN ++ +
Sbjct: 6 HAQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEV 65
Query: 275 WLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL-GSNVKLF 333
+ G+ +N +L + ++ +G A I A D + + G +L
Sbjct: 66 CWAAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLV 125
Query: 334 SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV- 392
+ + ++ +P +P + +G D L Y+SGTTG PK
Sbjct: 126 LDGDGE------LEGFVGYAEAVAGLPATPIA-DESLG-TDML---YSSGTTGRPKGIKR 174
Query: 393 ------ISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446
+ GFR+ + +P PLYH+A + G V++
Sbjct: 175 PLPEQPPDTPLPLTAFLQRLW--GFRSDMVYLSPAPLYHSAPQRAV-MLVIRLGGTVIVM 231
Query: 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLR------- 499
+ F A Y + + +Y T Q + M +L PE+ DK +++ + L
Sbjct: 232 EHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDK-YDL-----SSLEVAIHAAA 285
Query: 500 ---PQIWSEFVDRFRIAQIGEFYGATEGMAA 527
PQ+ + +D + I E+Y ATEG+
Sbjct: 286 PCPPQVKEQMIDWWG-PIIHEYYAATEGLGF 315
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 81.9 bits (203), Expect = 8e-17
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 373 QDKLIYIYTSGTTGLPKAAVISNHRYYFLGG---AIAYQIGFRTKDRFYTPLPLYHTAGG 429
D + ++TSGTTG PK + H+ A ++++ DR +PL+H G
Sbjct: 2 DDPALILHTSGTTGRPKGVPL-THKNLLASARNIAKSHKLTPS--DRCLNVMPLFHIHGL 58
Query: 430 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE-KPEDKAH 488
+ + L+ G VV KFSAS ++ D+ KY+ T + + + LL T + P
Sbjct: 59 IVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPP 118
Query: 489 NVRLM--FGNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
+R + L P + RF + E YG TE I
Sbjct: 119 RLRFIRSASAPLPPAVLDRLEKRFG-VPVLEAYGMTEAAHQI 159
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 83.6 bits (207), Expect = 9e-17
Identities = 69/299 (23%), Positives = 115/299 (38%), Gaps = 23/299 (7%)
Query: 189 ALQRYLRFLWAAR------RVAQ---KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQV 239
A LR L A R + + + + R A P + +F T ++
Sbjct: 5 AYLAELRALQQAAWPAGIPREPEYPHGERPLTEYLRAWARERPQRPAIIFYGHVITYAEL 64
Query: 240 EAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLH 299
+ S+R A +G+ GD VA+ L N P+F ++ G+ KLG + ++ R++ L +
Sbjct: 65 DELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSY 124
Query: 300 CINIAGVSAFIYGAELTDAVQE----------ISTSLGSNVKLFSWSPDTDSSSSPVPRS 349
+N AG + +L V++ I TSL + P DS +P +
Sbjct: 125 ELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAA 184
Query: 350 QALSPLLSEVPTSP-PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ 408
LL + P + YT GTTG+PK R A AY
Sbjct: 185 AGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPK-GCEHTQRDMVYTAAAAYA 243
Query: 409 IGF--RTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
+ F + LP + AG + L G +V+ ++ A + + V +Y+ T
Sbjct: 244 VAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTR 302
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 81.4 bits (202), Expect = 1e-16
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 6/156 (3%)
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
+YTSGTTG PK ++++ + D + PLYH AGG + AL
Sbjct: 7 LYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGLFLL-PALA 65
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG- 497
G VV+ KF + +++ T + M + LL P+ ++RL+
Sbjct: 66 AGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLRLIIYGAA 125
Query: 498 -LRPQIWSEFVDRFRIAQIGEFYGATE--GMAAILD 530
+ ++ + + + YG TE +L
Sbjct: 126 PMPAEL-KRAMIEWFGPVFVQGYGMTETGPTTTLLS 160
Score = 31.3 bits (72), Expect = 1.4
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 121 IGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 180
+G+IV PA GY N ++ + D + +GDL +D+ GYLY DR D
Sbjct: 195 VGEIVVRGPAV-MAGYWNRPEATAEALRDGW------LHTGDLGYLDEDGYLYIVDRKKD 247
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 81.5 bits (201), Expect = 4e-16
Identities = 77/346 (22%), Positives = 125/346 (36%), Gaps = 42/346 (12%)
Query: 195 RFLWAARRVA-QKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ 253
R +W A LTI +F E A +P+ V + + T +++A +NR+A ++
Sbjct: 213 REVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQQLTYAELDARANRLARLLISL 272
Query: 254 GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA 313
G+ G++VA++ + E V L + K G ++ L A+I
Sbjct: 273 GVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERL----------AYILED 322
Query: 314 ELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 373
+ + +V L + D LSE+P + P + +
Sbjct: 323 SRPTLLLTQAHLRVDDVGLPGLALDDA---------------LSEIPDTDP--IPQALLG 365
Query: 374 DKLIY-IYTSGTTGLPKAAVISNHRY--YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA 430
D L Y IYTSG+TG PK I HR L A A G DR L
Sbjct: 366 DALAYIIYTSGSTGQPKGVRIE-HRALANLLNDAGAR-FGLDADDRV-LALASLSFDASV 422
Query: 431 MCIGQALIFGCCVVIRKK---FSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKA 487
I AL+ G +V+ + + TV + + R LL P+ +
Sbjct: 423 FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLIS 482
Query: 488 H--NVRLMF--GNGLRPQIWSEFVDRFRIAQ-IGEFYGATEGMAAI 528
+R + G L + + +A+ + YG TE
Sbjct: 483 PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDA 528
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 80.3 bits (199), Expect = 6e-16
Identities = 53/216 (24%), Positives = 72/216 (33%), Gaps = 61/216 (28%)
Query: 232 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 291
T ++ R+A +A G+K GD VA++ ENRPE+V ++ L ++ A
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWV-----IADLAILAA----- 53
Query: 292 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQA 351
V IY + V I G+ V PD
Sbjct: 54 ------------GAVPVPIYPTSSPEEVAYILNDSGARVVFVEDKPD------------- 88
Query: 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ--I 409
D IYTSGTTG PK +++ HR L A A I
Sbjct: 89 ----------------------DLATLIYTSGTTGNPKGVMLT-HR-NLLAQAAALLEVI 124
Query: 410 GFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
DR + LPL H + L G V
Sbjct: 125 PLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNF 160
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 80.4 bits (199), Expect = 7e-16
Identities = 76/349 (21%), Positives = 141/349 (40%), Gaps = 29/349 (8%)
Query: 213 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 272
+ R +K+ +++ T +++ NR N G+++ + V L+L + PEF
Sbjct: 10 LDRHLNEGRGDKIALYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFP 69
Query: 273 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 332
+ G K+G + IN L + + +N + + EL + ++ +
Sbjct: 70 TAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHV 129
Query: 333 FSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV 392
+ S + L TS +++ ++Y+SG+TG PK V
Sbjct: 130 IVVGGAGPGALSYAQLIATAAEELEAAATSADDMAF---------WLYSSGSTGRPKGVV 180
Query: 393 ISNHRYYFLGGAIAYQI-GFRTKDRFYTPLPLYHTAGGAMCIGQALIF-----GCCVVIR 446
+H A A + G D ++ L+ G +G L F V++
Sbjct: 181 HLHHDMLVTAEAYAKNVLGITEDDVVFSAAKLFFAYG----LGNGLYFPLSVGATTVLMP 236
Query: 447 KKFSASNYFSDVCKYKCTVGQYIGEMCRY--LLSTPEKPEDKAHNVRLMF--GNGLRPQI 502
++ + F+ + +YK TV + G Y +L+ PEKPE ++RL G L +I
Sbjct: 237 ERPTPDAVFATIERYKPTV--FFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEALPAEI 294
Query: 503 WSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSY 551
+ + F + +I + G+TE M I N+ V + G K +P Y
Sbjct: 295 GYRWKELFGL-EILDGIGSTE-MLHIFLSNRPGAVKYGTSG--KPVPGY 339
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 78.7 bits (195), Expect = 8e-16
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 380 YTSGTTGLPKAAVISNHRYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
YTSGTTG PK A+++ HR G +IA ++G DR P+PL+H G + + +L
Sbjct: 9 YTSGTTGRPKGAMLT-HRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGVLASLT 67
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG- 497
G +V+ +KF + + + T + M LL P+ + ++R G
Sbjct: 68 AGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLRTGISGGA 127
Query: 498 LRPQIWSEFVDR----FRIAQIGEFYGATE--GMAAILDINKSLDVSAVSEGIKKALP 549
P E V R F +A+I YG TE G+ + + + G + LP
Sbjct: 128 PVP---PELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVG--RPLP 180
Score = 35.6 bits (83), Expect = 0.074
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 21/81 (25%)
Query: 117 PGVFI------GKIVPSNP-----ARAY---LGYVNEKD-SAKKIFTDVFEIGDSAFLSG 161
PGV + G VP R Y GY N+ + +A+ I D + +G
Sbjct: 180 PGVEVKIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGW------LHTG 233
Query: 162 DLLVMDKWGYLYFKDRTGDTF 182
DL MD+ GYL R D
Sbjct: 234 DLGYMDEDGYLRIVGRIKDMI 254
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 80.0 bits (198), Expect = 9e-16
Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 9/209 (4%)
Query: 232 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 291
E+T QV + R+A + GL+ GD +A++ +N E++ L + G ++ +
Sbjct: 5 HEYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPT 64
Query: 292 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQA 351
L ++ + + + A G D + + + P S +
Sbjct: 65 LTAETIRYVLEHSDAKALFVGK--LDDWDAMKAGVPEGLPTIILFP-----YSTLKDHYK 117
Query: 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGF 411
LL+ T P +D +YTSGTTG PK ++S + F IG
Sbjct: 118 WDDLLAA--TEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGL 175
Query: 412 RTKDRFYTPLPLYHTAGGAMCIGQALIFG 440
DR + LPL H A + G +L G
Sbjct: 176 TPNDRLLSYLPLAHIAERVIVEGGSLYSG 204
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 79.4 bits (196), Expect = 1e-15
Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 29/217 (13%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T Q ++ + +A AQG++ G VAL+ +N E V L LG A++N L +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354
N E T+ ++++ L L D + S + R +A
Sbjct: 61 N------------------ERTNQLEDLDVQLLLTDSLLE-EKDFQADS--LDRIEAAGR 99
Query: 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTK 414
SLS + ++TSGTTG PKA + +Y +GF
Sbjct: 100 -------YETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTED 152
Query: 415 DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSA 451
D + LPLYH +G ++ + + LI G + I KF+
Sbjct: 153 DNWLLSLPLYHISGLSI-LFRWLIEGATLRIVDKFNQ 188
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 78.1 bits (193), Expect = 5e-15
Identities = 63/278 (22%), Positives = 93/278 (33%), Gaps = 27/278 (9%)
Query: 206 KDLTIADIFREHAVRSPNKVIFM-FENTEW---TAQQVEAYSNRVANFFLAQGLKKGDSV 261
+ T+ E P+ V M E W T +++ +A+ L+ G+ GD V
Sbjct: 14 EIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRV 73
Query: 262 ALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA-ELTDAVQ 320
A+ NRPE+ L + LG ++ I L + +N + EL D V
Sbjct: 74 AIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVL 133
Query: 321 EISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP-----LLSEVPTSPPSLSYRVGVQDK 375
+ V L + + P L D
Sbjct: 134 PVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLIDSAGLEGRIAPPKPDDL 193
Query: 376 LIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-GFRTKDRFYTP-------LPLYHTA 427
IYTSGTTG PK +++ HR + Q+ G P LPL H
Sbjct: 194 ATIIYTSGTTGTPKGVMLT-HR------NLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIF 246
Query: 428 GGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
A G AL G V+ K D+ + + TV
Sbjct: 247 ERAFEGGLALYGGVTVLF--KEDPRTLLEDLKEVRPTV 282
Score = 30.7 bits (70), Expect = 2.5
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 135 GYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTF 182
GY ++ + FT+ D F +GDL +D+ GYL R +
Sbjct: 433 GYYKNPEATAEAFTE-----DGWFRTGDLGELDEDGYLVITGRKKELI 475
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 77.9 bits (192), Expect = 5e-15
Identities = 63/264 (23%), Positives = 119/264 (45%), Gaps = 13/264 (4%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFEN--TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALM 264
D ++AD +++ A P+K I + +N +T ++ ++R+AN+ LA+G++ GD VA
Sbjct: 22 DASLADYWQQTARAMPDK-IAVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQ 80
Query: 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAEL--TDAVQEI 322
L EF ++L K+G ++ + + R+ L+ +N F T V I
Sbjct: 81 LPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLI 140
Query: 323 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ-DKLIYI-Y 380
L + + D + P + +LS LS++ L+ + D+L + +
Sbjct: 141 -LPLQNQLPQLQQIVGVDKLA---PATSSLS--LSQIIADYEPLTTAITTHGDELAAVLF 194
Query: 381 TSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440
TSGT GLPK +++++ A ++ +D F P PL H G + + G
Sbjct: 195 TSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIG 254
Query: 441 CCVVIRKKFSASNYFSDVCKYKCT 464
V+ F+ + + + +CT
Sbjct: 255 ARSVLLDIFTPDACLALLEQQRCT 278
Score = 32.0 bits (73), Expect = 1.0
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 133 YLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 180
++GY++E + + + + + SGDL MD+ GY+ R D
Sbjct: 392 FMGYLDEPELTARALDE-----EGWYYSGDLCRMDEAGYIKITGRKKD 434
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 77.5 bits (191), Expect = 6e-15
Identities = 54/213 (25%), Positives = 80/213 (37%), Gaps = 6/213 (2%)
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 277
A R P+ + + T + +A+ GL +G+ VA+ L+ R E V G
Sbjct: 10 AARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFG 69
Query: 278 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSW-S 336
+ G + IN L+ + H + V + +E D + L
Sbjct: 70 AALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGD 129
Query: 337 PDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNH 396
P S P + LL+ PP V D +YTSG+TG PK V+S H
Sbjct: 130 PAHASEGHPGEEPASWPKLLALGDADPPH---PVIDSDMAAILYTSGSTGRPKGVVLS-H 185
Query: 397 RYYFLGG-AIAYQIGFRTKDRFYTPLPLYHTAG 428
R G ++A + R DR LPL G
Sbjct: 186 RNLVAGAQSVATYLENRPDDRLLAVLPLSFDYG 218
Score = 36.3 bits (84), Expect = 0.050
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 113 SRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIF------TDVFEIGDSAFLSGDLLVM 166
S C PG G++V A +GY N+ + + F + + A SGD +
Sbjct: 349 SECAPGE-EGELVHRGALVA-MGYWNDPEKTAERFRPLPPFPGELHLPELAVWSGDTVRR 406
Query: 167 DKWGYLYFKDR 177
D+ G+LYF R
Sbjct: 407 DEEGFLYFVGR 417
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 76.9 bits (190), Expect = 6e-15
Identities = 59/322 (18%), Positives = 109/322 (33%), Gaps = 58/322 (18%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T +++ ++R+A G++ GD VA L N EFV ++L +++G + I R+
Sbjct: 3 TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRE 62
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354
L + A
Sbjct: 63 RELGFILRQARARVLF-------------------------------------------- 78
Query: 355 LLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT 413
VP Y + D + + YTSGTTG PK + +++ + ++G
Sbjct: 79 ----VPDEFRGFDY-AAMPDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTP 133
Query: 414 KDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMC 473
D P PL H G + L+ G VV++ ++ + + ++ T
Sbjct: 134 DDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPFL 193
Query: 474 RYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFR---IAQIGEFYGATE-GMAAIL 529
LL+ + ++R+ G + E R A++ YG TE + +
Sbjct: 194 ADLLAAADAAGPDLPSLRVFLCGG--APVPRELARRAAEALGAKVVRAYGMTEVPLVTVG 251
Query: 530 DINKSLDVSAVSEGIKKALPSY 551
+ D A ++G +P
Sbjct: 252 TPDDPDDKRAATDGR--PVPGV 271
Score = 31.4 bits (72), Expect = 1.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 134 LGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 180
LGY++ D+ + D + F +GDL +D GYL R D
Sbjct: 300 LGYLDPPDNTEAFTDDGW------FRTGDLGRLDADGYLRITGRKKD 340
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 76.5 bits (189), Expect = 1e-14
Identities = 68/310 (21%), Positives = 112/310 (36%), Gaps = 52/310 (16%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T ++E R+A A+G +KGD V L+ N EF ++L + G + N
Sbjct: 34 TYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTP 93
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354
+ + +G I +EL + + ++ V L S S A+
Sbjct: 94 AEIAKQVKDSGAKLAITTSELAEKLASLAL---EPVVLL---------DSADDGSAAIDD 141
Query: 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYY---------FLGGAI 405
LL PP + + D Y+SGTTG K +++ HR G
Sbjct: 142 LLFADEPEPPVV--VIKQDDVAALPYSSGTTGRSKGVMLT-HRNLIANVAQLVAGEGPNF 198
Query: 406 AYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
+ D LP++H G + + L G VV+ +F + + + KYK T
Sbjct: 199 DRE------DVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKYKVT- 251
Query: 466 GQYIGEMCRYLLSTP-----------EKPEDKAHNVRLMFGNG-LRPQIWSEFVDRFRIA 513
+L P D + ++ G L ++ F RF
Sbjct: 252 ---------HLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGV 302
Query: 514 QIGEFYGATE 523
++G+ YG TE
Sbjct: 303 ELGQGYGMTE 312
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 75.6 bits (187), Expect = 3e-14
Identities = 68/279 (24%), Positives = 111/279 (39%), Gaps = 62/279 (22%)
Query: 207 DLTIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALM 264
+ TI + A R P++ +++ + WT ++ + +A LA G++KGD V +
Sbjct: 15 EQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIW 74
Query: 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI---------YGAEL 315
N PE+V +K+G I IN R + L + +N +G A I Y A L
Sbjct: 75 APNVPEWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAML 134
Query: 316 TDAVQEISTSLGSNVK--------------------LFSWSPDT--DSSSSPVPRSQALS 353
+ E++T ++ + ++ + + A
Sbjct: 135 YELAPELATCEPGQLQSARLPELRRVIFLGDEKHPGMLNF-DELLALGRAVDDAELAARQ 193
Query: 354 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY-----YFLGGAIAYQ 408
L P P + +Q YTSGTTG PK A ++ HR YF+G A
Sbjct: 194 ATLD--PDDP------INIQ------YTSGTTGFPKGATLT-HRNILNNGYFIGEA---- 234
Query: 409 IGFRTKDRFYTPLPLYHTAGGAMCIGQ--ALIFGCCVVI 445
+ +DR P+PLYH G M +G + G +V
Sbjct: 235 MKLTEEDRLCIPVPLYHCFG--MVLGNLACVTHGATMVY 271
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 74.2 bits (183), Expect = 7e-14
Identities = 77/336 (22%), Positives = 136/336 (40%), Gaps = 34/336 (10%)
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ--GLKKGDSVALMLENRPEFVCLW 275
A R P+K +F + +++ + R+A + L Q G++KGD V L ++N P+FV +
Sbjct: 20 ARRYPDKTAIVFYGRAISYRELLEEAERLAGY-LQQECGVRKGDRVLLYMQNSPQFVIAY 78
Query: 276 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG-SNVKLFS 334
+ + + +N R+ L H + +G I G+EL V +L +V +
Sbjct: 79 YAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQ 138
Query: 335 WSPDTDSSSSPVP-----RSQALSPLLSEVPTSP---------PSLSYRVGVQDKLIYIY 380
+S D + + R++ L+ + G D + Y
Sbjct: 139 YS-DYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPY 197
Query: 381 TSGTTGLPKAAVISNHR---YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQAL 437
TSGTTG+PK + HR +G + + LPL+H G + +
Sbjct: 198 TSGTTGVPKGC-MHTHRTVMANAVGSVLWSNSTP--ESVVLAVLPLFHVTGMVHSMNAPI 254
Query: 438 IFGCCVVIRKKF---SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF 494
G VV+ ++ +A+ +Y+ T I M L++P E ++R +
Sbjct: 255 YAGATVVLMPRWDREAAARLIE---RYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIG 311
Query: 495 GNGLR-PQIWSE-FVDRFRIAQIGEFYGATEGMAAI 528
G G P+ +E + + + E YG TE MA
Sbjct: 312 GGGAAMPEAVAERLKELTGLDYV-EGYGLTETMAQT 346
Score = 33.8 bits (78), Expect = 0.26
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 121 IGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFL-SGDLLVMDKWGYLYFKDR 177
+G+IV P + + GY N ++ + F EI F +GDL MD+ GY + DR
Sbjct: 384 VGEIVVHGP-QVFKGYWNRPEATAEAF---IEIDGKRFFRTGDLGRMDEEGYFFITDR 437
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 72.7 bits (179), Expect = 2e-13
Identities = 46/218 (21%), Positives = 84/218 (38%), Gaps = 7/218 (3%)
Query: 214 FREHAVRS-PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 272
F E A + P++ ++ + +T ++ R+A+ G+ KGD VA++ N P +
Sbjct: 9 FLERAAKVYPDRTAVVYGDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAML 68
Query: 273 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 332
G+ G + +N L + + +N + E +E L + +
Sbjct: 69 EAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEII 128
Query: 333 FSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAA 391
+ ++ LL+ P L + I + YTSGTTG PK
Sbjct: 129 DTEIIVISPAAEDSEEGDYED-LLAG--GDPDPLPIPPDDEWDPISLNYTSGTTGNPKGV 185
Query: 392 VISNHRYYFLGGAIA-YQIGFRTKDRFYTPLPLYHTAG 428
V + HR +L + G + + LP++H G
Sbjct: 186 VYT-HRGAYLNALGNVIEWGMPDRPVYLWTLPMFHCNG 222
Score = 29.9 bits (68), Expect = 4.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 134 LGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 180
GY ++ ++ F + F SGDL V+ GY+ KDR+ D
Sbjct: 385 KGYYKNPEATEEAFAGGW------FHSGDLAVVHPDGYIEIKDRSKD 425
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 71.7 bits (176), Expect = 4e-13
Identities = 79/347 (22%), Positives = 134/347 (38%), Gaps = 19/347 (5%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 268
T+A + HA P+ V + E+ + ++ A +R+A + AQG+++GD VA+ L N
Sbjct: 11 TLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNC 70
Query: 269 PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY-----GAELTDAVQEIS 323
E+V L+L ++LG +N R + + H + + G + + +
Sbjct: 71 IEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVP 130
Query: 324 TSLGSNVKLFSWSPDTDSSSSPVP-RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIY-T 381
++ + D + ++P P + P P + R D ++ T
Sbjct: 131 PDALPPLRAIA-VVDDAADATPAPAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTT 189
Query: 382 SGTTGLPKAAVISNHRYYFL---GGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
SGTT PK + HR L AIA G+ LP G + +G AL
Sbjct: 190 SGTTSGPKLVL---HRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLG-ALA 245
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGL 498
G +V F A+ + +++ T EM R +L T + D F +
Sbjct: 246 GGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERADFPSARLFGFAS-F 304
Query: 499 RPQIWSEFVDRFRI--AQIGEFYGATEGMAAILDINKSLDVSAVSEG 543
P E R + YG++E A + + VS EG
Sbjct: 305 APA-LGELAALARARGVPLTGLYGSSEVQALVALQPATDPVSVRIEG 350
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 71.2 bits (175), Expect = 5e-13
Identities = 69/302 (22%), Positives = 106/302 (35%), Gaps = 73/302 (24%)
Query: 232 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 291
E+T Q++ SNR+AN G+++GD V + L PE L + KLG ++ ++
Sbjct: 5 EEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVL 64
Query: 292 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQA 351
+++ H + +G + TD S P
Sbjct: 65 FGPDAVEHRLRDSGARVLV----------------------------TDGSDDPA----- 91
Query: 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGF 411
I IYTSGTTG PK A+ HR LG ++ F
Sbjct: 92 -------------------------ILIYTSGTTGPPKGALHG-HR-VLLGHLPGVELYF 124
Query: 412 ----RTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI--RKKFSASNYFSDVCKYKCTV 465
R D F+TP G + AL FG VV ++F F+ + +Y T
Sbjct: 125 ELAPRPGDVFWTPADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTN 184
Query: 466 GQYIGEMCRYLLSTPEKPEDKAHNVR-LMFGN---GLRPQIWSEFVDRFRIAQIGEFYGA 521
+ + + +R + G G W+ D + + EFYG
Sbjct: 185 AFLPPTALKMMRRVGSERARYDLRLRAVASGGESLGEELLEWAR--DELGLT-VNEFYGQ 241
Query: 522 TE 523
TE
Sbjct: 242 TE 243
Score = 35.0 bits (81), Expect = 0.12
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 132 AYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTF 182
+LGY N ++ F L+GDL D GYL+FK R D
Sbjct: 298 MFLGYWNNPEATAAKFAG------DWLLTGDLGRRDADGYLWFKGRADDVI 342
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 70.7 bits (173), Expect = 7e-13
Identities = 65/311 (20%), Positives = 124/311 (39%), Gaps = 24/311 (7%)
Query: 217 HAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 276
HA R+P++ ++ + E + + + A A+G+ +GD VAL+++N F+ L
Sbjct: 11 HARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAF 70
Query: 277 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWS 336
S LG + IN+ L + + + + AG + E + +L + + +
Sbjct: 71 AASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEF-----DAIVALETPKIVIDAA 125
Query: 337 PDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNH 396
DS + P+ R+ +YTSGTT PK + S
Sbjct: 126 AQADSRRLAQGGLEI-----PPQAAVAPTDLVRL--------MYTSGTTDRPKGVMHSYG 172
Query: 397 RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI-GQALIF-GCCVVIRKKFSASNY 454
++ +G +R PLYH GA + G A+++ G + I ++F
Sbjct: 173 NLHWKSIDHVIALGLTASERLLVVGPLYHV--GAFDLPGIAVLWVGGTLRIHREFDPEAV 230
Query: 455 FSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRP--QIWSEFVDRFRI 512
+ + +++ T M +L+ P++ ++ G G + +F F
Sbjct: 231 LAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTR 290
Query: 513 AQIGEFYGATE 523
A+ + YG TE
Sbjct: 291 ARYIDAYGLTE 301
Score = 29.1 bits (65), Expect = 8.0
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 135 GYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 180
GY + + + F + F SGD+ +D+ G+LY DR D
Sbjct: 358 GYWKDPEKTAEAFYGDW------FRSGDVGYLDEEGFLYLTDRKKD 397
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 70.7 bits (173), Expect = 8e-13
Identities = 76/331 (22%), Positives = 131/331 (39%), Gaps = 39/331 (11%)
Query: 209 TIADIFREHAVRSPNKVIFM--FENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T+ ++ R A R+P+ + T ++ A VA A+G++ VA++
Sbjct: 2 TVFEMLRRAATRAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAP 61
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY--GAELTDAVQEIST 324
N + V L L +LG + AL+N L+ + I ++A + A++ DA+ +
Sbjct: 62 NSVDAVIALLALHRLGAVPALMNPRLKPAEIAELIKRGEMTAAVIAVDAQVMDAIFQ--- 118
Query: 325 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGT 384
GS V++ + D P ++ P + + P P + YTSGT
Sbjct: 119 -SGSGVRVLALG-DLVGLGEP----ESAGPPIEDPPREP---------EQPAFVFYTSGT 163
Query: 385 TGLPKAAVISNH----RYYFLGGAIAYQIGFR--TKDRFYTPLPLYHTAGGAMCIGQALI 438
TGLPK AVI R F+ + Q G R + +PLYH G + AL
Sbjct: 164 TGLPKGAVIPQRAAESRVLFM----STQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALA 219
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCT----VGQYIGEMCRYLLSTPEKPEDKAHNVRLMF 494
V+ ++F ++ + + + T ++ + P K + H + F
Sbjct: 220 LDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALAAAAEGAPLKLDSLEH---VTF 276
Query: 495 GNGLRPQIWSEFVDRFRIAQIGEFYGATEGM 525
P E V++ + YG TE M
Sbjct: 277 AGATMPDAVLERVNQHLPGEKVNIYGTTEAM 307
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 69.8 bits (171), Expect = 2e-12
Identities = 61/241 (25%), Positives = 97/241 (40%), Gaps = 32/241 (13%)
Query: 217 HAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 276
HA+ P+ F T ++++ +A +G+ GD V +++ NR EFV L
Sbjct: 26 HALMQPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVL 85
Query: 277 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTD---AVQEISTSLGSNVKLF 333
+ LG I +N L + ++ G + A L AV++I L + V
Sbjct: 86 AANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAG 145
Query: 334 SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVI 393
S D+ + + ++P P+L +YTSGTTG PK AV+
Sbjct: 146 GSSDDSVLGYEDLLAEAGPAHAPVDIPNDSPAL-----------IMYTSGTTGRPKGAVL 194
Query: 394 SNHRY--------YFLGGAIAYQIGFRTKDRFYTPLPLYHTAG-GAMCIGQALIFGCCVV 444
++ G I +GF +PL+H AG G+M G L+ G V
Sbjct: 195 THANLTGQAMTCLRTNGADINSDVGFVG-------VPLFHIAGIGSMLPG--LLLGAPTV 245
Query: 445 I 445
I
Sbjct: 246 I 246
Score = 29.7 bits (67), Expect = 5.7
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 121 IGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 180
+G+IV P GY N ++ + F G F SGDL+ D+ GY++ DR D
Sbjct: 371 VGEIVYRAPT-LMSGYWNNPEAT----AEAFAGG--WFHSGDLVRQDEEGYVWVVDRKKD 423
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 69.5 bits (171), Expect = 2e-12
Identities = 51/223 (22%), Positives = 80/223 (35%), Gaps = 57/223 (25%)
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 277
A P + + T QQ+ A +++A F QG+ +G VAL +N PE + +L
Sbjct: 13 AQVRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA 72
Query: 278 LSKLGVITALIN----HNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLF 333
L + G +N L + LL + + + L
Sbjct: 73 LLQCGARVLPLNPQLPQPLLE-ELLPSLTLD------FALVLEGENT------------- 112
Query: 334 SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV- 392
+S T V + A++ P ++ TSG+TGLPKAAV
Sbjct: 113 -FSALTSLHLQLVEGAHAVAWQ----PQRLATM------------TLTSGSTGLPKAAVH 155
Query: 393 -ISNHRYYFLGGAIAYQIG------FRTKDRFYTPLPLYHTAG 428
H +A G F +D + LPL+H +G
Sbjct: 156 TAQAH--------LASAEGVLSLMPFTAQDSWLLSLPLFHVSG 190
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 69.4 bits (170), Expect = 2e-12
Identities = 59/283 (20%), Positives = 104/283 (36%), Gaps = 26/283 (9%)
Query: 198 WAARRVAQ-------KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFF 250
W + +D T+ DI +HA R P+++ + + +++ ++R+A
Sbjct: 11 WPEEFARRYREKGYWQDRTLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGL 70
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI--TALINHNLRQNSLLHCINIAGVSA 308
G+K GD+V + L N EF + L +LGV AL +H R + L + +
Sbjct: 71 RRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLALPSH--RASELGAFASQIEAAL 128
Query: 309 FI--YGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSL 366
I D + + L ++ V + P P P
Sbjct: 129 LIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPAGLFTPAPPA-- 186
Query: 367 SYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT 426
+ + + GTTG PK +++ YY+ A A GF + + LP H
Sbjct: 187 ----DAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHN 242
Query: 427 AGGAMC----IGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
+ +G + G VV+ S F + ++ TV
Sbjct: 243 F--PLSSPGALG-VFLAGGTVVLAPDPSPELCFPLIERHGVTV 282
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 68.7 bits (168), Expect = 4e-12
Identities = 67/294 (22%), Positives = 113/294 (38%), Gaps = 57/294 (19%)
Query: 200 ARRVAQK----DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGL 255
A R +K D + DI R+ A R P+ + + N +W+ ++++ ++ +A G+
Sbjct: 11 AERYREKGYWQDKPLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGI 70
Query: 256 KKGDSVALMLENRPEFVCLWLGLSKLGV--ITALINHNLR---------QNSLLHCINIA 304
K+GD+ + L N EF ++ L KLGV + AL +H + +L I
Sbjct: 71 KQGDTAVVQLPNIAEFYIVFFALLKLGVAPVLALFSHRKSELTAYASQIEPALY--IIDR 128
Query: 305 GVSAFIYGAELTDAVQEISTSLGSNV-------KLFSW--SPDTDSSSSPVPRSQALSPL 355
S F Y ++ T V +LF W SP P +
Sbjct: 129 AHSLFDYDDFARQLQSKLPTLRNIIVAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQ 188
Query: 356 LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKD 415
LS G+TG PK +++ YY+ +
Sbjct: 189 LS------------------------GGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQT 224
Query: 416 RFYTPLPLYH----TAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
R+ LP H ++ GA+ + A G CVV+ S ++ F + ++K TV
Sbjct: 225 RYLCALPAAHNYPLSSPGALGVFYA---GGCVVLAPDPSPTDCFPLIERHKVTV 275
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 67.7 bits (165), Expect = 7e-12
Identities = 70/279 (25%), Positives = 109/279 (39%), Gaps = 45/279 (16%)
Query: 217 HAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE-FVC 273
HA +P++ VI + + +Q++ S +A GL+ GD VAL+ +N PE V
Sbjct: 6 HAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVV 65
Query: 274 LWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLF 333
LW L ITA INH+L + + +G + A L ++ L +
Sbjct: 66 LWAALRSGLYITA-INHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRL--- 121
Query: 334 SWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKA--- 390
S+ + D S P L+E P + +Y+SGTTG PK
Sbjct: 122 SFGGEIDGFGSFEAALAGAGPRLTEQPCGA-------------VMLYSSGTTGFPKGIQP 168
Query: 391 ------------AVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
+++ R ++ D +Y+ P+YH A C
Sbjct: 169 DLPGRDVDAPGDPIVAIARAFY---------DISESDIYYSSAPIYHAAPLRWC-SMVHA 218
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLL 477
G VV+ K+F A V +Y+ TV Q + M LL
Sbjct: 219 LGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLL 257
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 67.7 bits (166), Expect = 7e-12
Identities = 61/251 (24%), Positives = 97/251 (38%), Gaps = 23/251 (9%)
Query: 220 RSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLS 279
R P++ + +T T Q+ +R F A GL GD+VAL+ NRPE +
Sbjct: 24 RYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQ 83
Query: 280 KLGV-ITALINHNLRQNSL---LHCINIAGVSAFIY-GAELTDAVQEISTSLGSNVKLFS 334
G+ TAL H L SL + + AG+S I A + + + S + +
Sbjct: 84 LAGLRRTAL--HPL--GSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLT 139
Query: 335 WSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVI 393
P D LL+ P+ + + + YT GTTG PK +
Sbjct: 140 LGPVPDGVD-----------LLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMG 188
Query: 394 SNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASN 453
++ + + + RF PL H AGGA L+ G V++ KF +
Sbjct: 189 THRSIATMAQIQLAEWEWPADPRFLMCTPLSH-AGGAF-FLPTLLRGGTVIVLAKFDPAE 246
Query: 454 YFSDVCKYKCT 464
+ + + T
Sbjct: 247 VLRAIEEQRIT 257
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 67.4 bits (165), Expect = 8e-12
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
T +++ +NR AN A G+ GD V L+L + PE V +L K G + +N L
Sbjct: 11 LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLT 70
Query: 294 QNSLLHCINIAGVSAFIYGAE 314
L H ++ +G + + A+
Sbjct: 71 PQDLEHILDDSGAALLVTEAD 91
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 66.5 bits (163), Expect = 1e-11
Identities = 43/160 (26%), Positives = 60/160 (37%), Gaps = 17/160 (10%)
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG---GAMCIGQ 435
IYTSGTTG PK V+++ A+ + D LPL+H G C
Sbjct: 94 IYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHVHGLFNALHC--- 150
Query: 436 ALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPE---KPEDKAHNVRL 492
L G V +F + + TV + + LL E A N+RL
Sbjct: 151 PLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTRLLEHYEFDDAAAAAARNLRL 210
Query: 493 MF-GNG-LRPQIWSEFVDRF--RIAQIGEFYGATE-GMAA 527
G+ L + + +R + E YG TE GMA
Sbjct: 211 FVSGSAALPVPVLERWEERTGHTLL---ERYGMTETGMAL 247
Score = 58.0 bits (141), Expect = 6e-09
Identities = 22/91 (24%), Positives = 44/91 (48%)
Query: 223 NKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282
+++ + T +++A S R+A LA GL GD VA++ E+V L+L + + G
Sbjct: 1 DRIALVDGGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAG 60
Query: 283 VITALINHNLRQNSLLHCINIAGVSAFIYGA 313
+ +N + L + ++ + S + A
Sbjct: 61 GVAVPLNPSYPAAELAYILSDSQPSLLVDPA 91
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 66.2 bits (162), Expect = 2e-11
Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 25/301 (8%)
Query: 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 292
+T VE S RVA G+++GD V L+L N PEFV +LG S+ G +T N
Sbjct: 50 VYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFY 109
Query: 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 352
+ +G I + D ++ ++ V + + + +QA
Sbjct: 110 TPAEIAKQAKASGAKLIITQSCYVDKLKGLAE--DDGVTVVTIDDPPEGCLHFSELTQAD 167
Query: 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ---- 408
L EV SP D + Y+SGTTGLPK +++ H+ L ++A Q
Sbjct: 168 ENELPEVEISP---------DDVVALPYSSGTTGLPKGVMLT-HKG--LVTSVAQQVDGE 215
Query: 409 ---IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
+ F + D LP++H + L G ++I KF + ++K T+
Sbjct: 216 NPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTI 275
Query: 466 GQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRP---QIWSEFVDRFRIAQIGEFYGAT 522
++ + + +P + ++R M +G P ++ F + A +G+ YG T
Sbjct: 276 APFVPPIVLAIAKSPVVEKYDLSSIR-MVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMT 334
Query: 523 E 523
E
Sbjct: 335 E 335
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 66.2 bits (162), Expect = 3e-11
Identities = 57/250 (22%), Positives = 89/250 (35%), Gaps = 42/250 (16%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTE----WTAQQVEAYSNRVANFFLAQGLKKGDSVALM 264
T+ + + A +P + I + + ++ + R+ A GLK GDSV L
Sbjct: 11 TLEEALQRAAEHAPGRGITYIDADGSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQ 70
Query: 265 LENRPEFV-CLW---LGLSKLGVITALI-------NHNLRQNSLLHCINIAGVSAFIYGA 313
LE +FV W LG G + + N L + + G + A
Sbjct: 71 LERNEDFVTAFWACVLG----GFVPVPVAVPPTYDEPNAAVAKLRNIWELLGSPVILTDA 126
Query: 314 ELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 373
L A+ + T G R A+ L S P + +
Sbjct: 127 ALVAALAGLRTRAGL----------------EALRVLAIEELRS---APPDAPLHPARPD 167
Query: 374 DKLIYIYTSGTTGLPKAAVISNHRYYF--LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM 431
D + + TSG+TG+PK V++ HR G + GF D +PL H G M
Sbjct: 168 DPALLLLTSGSTGVPKCVVLT-HRNILARSAGTVQVN-GFTPDDVSLNWMPLDHVGGIVM 225
Query: 432 CIGQALIFGC 441
+ + GC
Sbjct: 226 LHLRDVYLGC 235
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 64.2 bits (157), Expect = 8e-11
Identities = 68/321 (21%), Positives = 118/321 (36%), Gaps = 78/321 (24%)
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVS--- 307
+ + K+G+++ +ML + L L G + ++N + L AG+
Sbjct: 24 IKKLTKEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGIKTVI 83
Query: 308 ---AFIYGAELTDAV-----------QEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALS 353
AF+ +L V +++ + KL ++ + L
Sbjct: 84 TSRAFLEKLKLEGLVVLLEGVRIVYLEDLRAKISKADKLKAFL------------AAKLP 131
Query: 354 PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT 413
P L + + D + ++TSG+ GLPK V+S+ IA I T
Sbjct: 132 PALLRLFLAGAKPD------DPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNT 185
Query: 414 KDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSD----------VCKYKC 463
+D LPL+H G + + L+ G VV Y+ + + YK
Sbjct: 186 EDVLLGALPLFHAFGLTVTLLLPLLTGLRVV---------YYPNPLDAKKIAELIRDYKA 236
Query: 464 TVGQYIGEMCRYLLSTPE---------KPEDKAHNVRLMFGNG--LRPQIWSEFVDRFRI 512
T+ L TP PED + ++RL+ L F ++F I
Sbjct: 237 TI----------LCGTPTFLRGYARNAHPEDFS-SLRLVVAGAEKLPEATRELFEEKFGI 285
Query: 513 AQIGEFYGATEGMAAILDINK 533
+I E YGATE + ++ +N
Sbjct: 286 -RILEGYGATE-CSPVISVNT 304
Score = 30.3 bits (69), Expect = 3.8
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 134 LGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDR 177
GY+N ++ +V +GD + +GD+ +D+ G+L R
Sbjct: 350 SGYLNNEEKTS----EVEVLGDGWYDTGDIGKIDEDGFLTIVGR 389
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 64.3 bits (157), Expect = 8e-11
Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 25/207 (12%)
Query: 200 ARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGD 259
+RRV + +A R+ A R P+++ ++ + WT ++++A + +A A+G++KGD
Sbjct: 3 SRRV----MNLAHFLRQAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGD 58
Query: 260 SVALMLENRPE-FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA---EL 315
+ + N + F ++ +LG + N + + + +G A I A E
Sbjct: 59 RILVHSRNCNQMFESMFAAF-RLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEH 117
Query: 316 TDAVQEISTSLGSNVKLFS--WSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 373
AV+ S L V + D ++ L++ + + + V
Sbjct: 118 AAAVRAASPDLTHVVAIGGARAGLDYEA-------------LVARHLGARVANA-AVDHD 163
Query: 374 DKLIYIYTSGTTGLPKAAVISNHRYYF 400
D + +TSGTTG PKAAV+++ + F
Sbjct: 164 DPCWFFFTSGTTGRPKAAVLTHGQMAF 190
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 64.2 bits (157), Expect = 9e-11
Identities = 51/239 (21%), Positives = 82/239 (34%), Gaps = 73/239 (30%)
Query: 217 HAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWL 276
A P+ V F + T +++ +N++A+ ++ G++ GD VAL LE WL
Sbjct: 1 RAQTHPDAVAVDFWDGSLTYAELDRRANKLAHHLISLGVRPGDIVALCLER-----SPWL 55
Query: 277 GLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWS 336
++ L V+ A I + + +Q I G+ V L S
Sbjct: 56 YVAILAVLKA-----------------GAAYVPIDPSAPVERLQFIIEDSGATVVLTS-- 96
Query: 337 PDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNH 396
SP +Y IYTSG+TG PK VI++
Sbjct: 97 -------------------------SPDDPAY---------VIYTSGSTGKPKGVVITHR 122
Query: 397 RYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA----MCIGQ---ALIFGCCVVIRKK 448
A +G R DR + + I + L+ G +VI +
Sbjct: 123 NICNFLRAEGAILGIRPGDRVL--------QFASIAFDVSILEIFTTLLAGGTLVIPPE 173
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 64.1 bits (157), Expect = 9e-11
Identities = 58/229 (25%), Positives = 93/229 (40%), Gaps = 34/229 (14%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
+T ++A S R+AN +A G+K GD VA+ +E PE + L+L + G + +N
Sbjct: 29 YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYT 88
Query: 294 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALS 353
L + I A + + + +I+ + G+ + + D D + S + + A
Sbjct: 89 LAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGA-PHVETL--DADGTGSLLEAAAAAP 145
Query: 354 PLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAV------ISN----HRYYFLG 402
VP D L I YTSGTTG K A+ +SN Y+
Sbjct: 146 DDFETVPRGA----------DDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW--- 192
Query: 403 GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSA 451
F D LP++HT G + AL+ G ++ KF
Sbjct: 193 -------RFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDP 234
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 62.6 bits (153), Expect = 2e-10
Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 14/166 (8%)
Query: 367 SYRVGVQDKLIYIYTSGTTGLPKAAVIS--NHRYYFLGGAIAYQIGFRTKDRFYTPLPLY 424
+ + I+TSG+TG PKA V + NH G A +G D + LPL+
Sbjct: 71 DLQPDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARG--SAENLGLTPDDNWLLSLPLF 128
Query: 425 HTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE 484
H G + ++L+ G +V+ KF A + + T + + LL
Sbjct: 129 HV-SGLAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLE--SLGA 185
Query: 485 DKAHNVRLMF-GNGLRPQIWSEFVDRFRIAQIGEF--YGATEGMAA 527
++R + G I +++ R I + YG TE A+
Sbjct: 186 RWLSSLRAVLLGGAP---IPPSLLEQARQRGIPLYPTYGMTE-TAS 227
Score = 61.8 bits (151), Expect = 4e-10
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
T Q+++ +++A A G+++GD VAL+ +N EF+ L+L L +LG + +N L
Sbjct: 2 LTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRLP 61
Query: 294 QNSL 297
Q L
Sbjct: 62 QEEL 65
Score = 30.2 bits (69), Expect = 3.5
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 134 LGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTF 182
LGY+ + + D F +GDL +D GYLY R D
Sbjct: 272 LGYLPQGGLTPPLD------EDGWFHTGDLGYLDAEGYLYVLGRRDDLI 314
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 62.8 bits (153), Expect = 2e-10
Identities = 56/251 (22%), Positives = 88/251 (35%), Gaps = 40/251 (15%)
Query: 197 LWAARRVAQK------DLTIADIFREHAVRSPNKVIFM------FENTEWTAQQVEAYSN 244
L RR A D TI D P+K +T +++ A +
Sbjct: 7 LLPPRRAASIAAGHWHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVD 66
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIA 304
RVA G+ +GD V+ L N EF L+L S++G + + R+ L + A
Sbjct: 67 RVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSFMLKHA 126
Query: 305 GVSAFIYGAELTD-----AVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 359
+ + + L + + D S + ++P +
Sbjct: 127 ESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEAL----LITPAWEQE 182
Query: 360 PTSPPSL-SYRVGVQDKLIYIYTSGTTGLPKAA------VISNHRYY------------F 400
P +P L R G D IYTSGTTG PK +++N Y
Sbjct: 183 PDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVIL 242
Query: 401 LGGAIAYQIGF 411
+ +A+Q GF
Sbjct: 243 MASPMAHQTGF 253
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 62.2 bits (152), Expect = 4e-10
Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 39/213 (18%)
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFV-----CLWLGLSKLGVITALINHNLRQNS-LL 298
+A A G GD V L+ +FV CL+ G + V R + L
Sbjct: 35 AIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGA--IAVPAPPPRRLGRHLARLA 91
Query: 299 HCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSE 358
+ AG A + + + A++ + + + L + D + ++ R
Sbjct: 92 AILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAALAAADWR---------P 142
Query: 359 VPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS------NHRYYFLGGAIAYQIGFR 412
P P +++ +Q YTSG+TG PK +++ N R AIA G
Sbjct: 143 PPPDPDDIAF---LQ------YTSGSTGAPKGVMVTHGNLLANLR------AIARAFGLD 187
Query: 413 TKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
D + LPLYH G + Q L G VV+
Sbjct: 188 PDDVGVSWLPLYHDMGLIGGLLQPLYAGFPVVL 220
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 61.1 bits (148), Expect = 1e-09
Identities = 63/258 (24%), Positives = 98/258 (37%), Gaps = 21/258 (8%)
Query: 210 IADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
IAD+ A R P ++ + + + + + +A GL GD VAL + +
Sbjct: 18 IADLVEVAATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGS 77
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 327
EFV L S+ ++ ++ L AG L DA +
Sbjct: 78 NAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVV-----LIDADGPHDRAEP 132
Query: 328 SNVKLFSWSPDTDS-SSSPVPRSQALSPLLSEV--PTSPPSLSYRVGVQDKLIYIYTSGT 384
+ W P T + P LS L PT S + D +I ++T GT
Sbjct: 133 TT----RWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATSTPEGLRPDDAMI-MFTGGT 187
Query: 385 TGLPKAAVISNHRYYFLGGAI--AYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC 442
TGLPK ++ AI Y++ R D +PLYH G + L G
Sbjct: 188 TGLPKMVPWTHANIASSVRAIITGYRLSPR--DATVAVMPLYHGHGLIAALLATLASGGA 245
Query: 443 VVI--RKKFSASNYFSDV 458
V++ R +FSA ++ D+
Sbjct: 246 VLLPARGRFSAHTFWDDI 263
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 60.6 bits (148), Expect = 1e-09
Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 32/179 (17%)
Query: 222 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281
P+ + ++ + T ++ +NR+A A+G+ GD VAL+LE PE V L + K
Sbjct: 1 PDAIALVYGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKA 60
Query: 282 GVITALINHNL---RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPD 338
G ++ R +L +G + L + + + D
Sbjct: 61 GAAYVPLDPAYPAERLAFMLED---SGARVLLTDESLAPLARAD----QLPLVILEEELD 113
Query: 339 TDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 397
+ + P P L+Y +YTSG+TG PK V HR
Sbjct: 114 AEDAGPPAP------------AVDADDLAY---------VMYTSGSTGRPK-GVAVPHR 150
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 60.4 bits (147), Expect = 2e-09
Identities = 67/293 (22%), Positives = 104/293 (35%), Gaps = 49/293 (16%)
Query: 184 ALKSRA-LQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAY 242
A + LQ Y W + D T+ D++ R ++ F T ++
Sbjct: 9 AFADKPWLQSYAP--WTPHDLDYGDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQ 66
Query: 243 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALIN-----HNLRQNSL 297
R A A G++ GD VA++L N P+ + + + +LG + N H L
Sbjct: 67 VRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYTAHELEHPFE 126
Query: 298 LHCINIAGV-----SAF-----------IYGAELTDA---VQEISTSL------GSNVKL 332
H +A V I + A +Q ++ L + L
Sbjct: 127 DHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAAL 186
Query: 333 FSWSPDTDSSSSPVPRSQALS--PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKA 390
+P T VP + S P R D + +YTSGTTG PK
Sbjct: 187 TGPAPGT------VPWETLVDAAIGGDGSDVSHP----RPTPDDVALILYTSGTTGKPKG 236
Query: 391 AVISNHRYYFLGGAI--AYQIGFRTKD-RFYTPLPLYHTAGGAMCIGQALIFG 440
A ++ HR F A A+ G R LP++H G +C+ A+ G
Sbjct: 237 AQLT-HRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIG 288
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 59.1 bits (144), Expect = 4e-09
Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 18/186 (9%)
Query: 218 AVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275
AV P E + +++A S+ +A+ A G+ +G LM+ EF L
Sbjct: 24 AVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALT 83
Query: 276 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSW 335
L K G + L++ + +L C+ A AFI G + +LF W
Sbjct: 84 FALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFI-GIPKAHLAR----------RLFGW 132
Query: 336 SPDTDSSSSPVPRSQALS-PLLSEVPTSPPSLSY---RVGVQDKLIYIYTSGTTGLPKAA 391
+ V L+ + + + + D ++TSG+TG PK
Sbjct: 133 GKPSVRRLVTVGGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGV 192
Query: 392 VISNHR 397
V + H
Sbjct: 193 VYT-HG 197
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 58.5 bits (142), Expect = 5e-09
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
WT +++ S+R ANF G+ +GD VA++L PE + LG KLG + L
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 294 QNSLLHCINIAGVSAFIYGAE 314
+ + + AG A + A+
Sbjct: 61 PKDIRYRLERAGARAIVTSAD 81
Score = 48.9 bits (117), Expect = 5e-06
Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 39/198 (19%)
Query: 373 QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI--AYQIGFRTKDRFYTPLPLYHTAGGA 430
D + +TSGTTGLPK + ++ Y LG + AY + R D +T G A
Sbjct: 81 DDPALLYFTSGTTGLPKMVLHTHS--YPLGHLVTGAYWLDLRPDDLHWTI----ADPGWA 134
Query: 431 MCIGQALIF----GCCVVIR--KKFSASNYFSDVCKYKCTVGQYIGEMC------RYLLS 478
+L G V + ++F A + +Y T C R LL
Sbjct: 135 KGAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTT------FCAPPTAYRMLLQ 188
Query: 479 TPEKPEDKAHNVRLMFGNG--LRPQIWSEFVDRFRIA---QIGEFYGATEGMAAILDINK 533
D +H +R + G L P E +D +R A I + YG TE ++
Sbjct: 189 QDLSSYDFSH-LRHVVSAGEPLNP----EVIDWWRAATGLPIRDGYGQTE-TGLLVANFP 242
Query: 534 SLDVSAVSEGIKKALPSY 551
++V S G + P Y
Sbjct: 243 GMEVKPGSMG--RPAPGY 258
Score = 30.4 bits (69), Expect = 3.3
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 125 VPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTF 182
V P + GY+ + + + + +L+GD + D+ GY +F R D
Sbjct: 282 VKPRPPGLFRGYLKDPEKTEATIRGDW------YLTGDRAIKDEDGYFWFVGRADDVI 333
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 57.7 bits (139), Expect = 9e-09
Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 48/221 (21%)
Query: 238 QVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSL 297
++ A +A AQ + +G V ++ +N PE L +KLG I + + NL ++
Sbjct: 46 ELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLPIAAI 105
Query: 298 LHCINIAGVSAFIYG----------AELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVP 347
I +A + E ++ I+ + + + S D S
Sbjct: 106 ERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAAS------ 159
Query: 348 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY 407
G +D L I+TSGTTG PKA +++N R +F I
Sbjct: 160 ------------LAGNADQ----GSEDPLAMIFTSGTTGEPKAVLLAN-RTFFAVPDILQ 202
Query: 408 QIGFRTKD-----RFYTPLPLYHTAG----------GAMCI 433
+ G Y+PLP H G G +C+
Sbjct: 203 KEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCV 243
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 57.6 bits (140), Expect = 1e-08
Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 20/222 (9%)
Query: 216 EHAVRS-PNKVI----FMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 270
EHA R ++ I +T R+AN + G+K GD VA + N
Sbjct: 3 EHAARYFGDREIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHR 62
Query: 271 FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNV 330
+ L+ + +G + +N L + + IN A + ++ I+ L + V
Sbjct: 63 HLELYFAVPGMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRLPT-V 121
Query: 331 KLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK--LIYI-YTSGTTGL 387
K D D + +P A LL E Y D+ + YTSGTTG
Sbjct: 122 KAVVVYDDADMPETSLPNVYAYEELLEEESP-----EYEWPELDENTAAGLCYTSGTTGN 176
Query: 388 PKAAVISNHRYYFL---GGAIAYQIGFRTKDRFYTPL-PLYH 425
PK V S HR L A+ +G D P+ P++H
Sbjct: 177 PKGVVYS-HRSLVLHTLASALPDSLGLSESDT-VLPVVPMFH 216
Score = 30.6 bits (70), Expect = 2.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 158 FLSGDLLVMDKWGYLYFKDRTGD 180
F +GD+ V+D+ GY+ DR D
Sbjct: 399 FRTGDVAVIDEDGYIQITDRAKD 421
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 57.9 bits (140), Expect = 2e-08
Identities = 60/317 (18%), Positives = 105/317 (33%), Gaps = 31/317 (9%)
Query: 213 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 272
+ A + P + +F + ++ +NR+A+ +A G+ V + +E E V
Sbjct: 517 LIEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMV 576
Query: 273 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 332
L + K G ++ Q+ L + ++ +GV + A + L S
Sbjct: 577 VGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGV-RLLLTQSHLLAQLPVPAGLRS---- 631
Query: 333 FSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV 392
D + + +P EV P +L+Y IYTSG+TG PK
Sbjct: 632 ----LCLDEPADLLCGYSGHNP---EVALDPDNLAY---------VIYTSGSTGQPKGVA 675
Query: 393 ISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK---F 449
IS+ IA ++ D G G AL G + +
Sbjct: 676 ISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFG-ALASGATLHLLPPDCAR 734
Query: 450 SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLR---PQIWSEF 506
A + + + TV + + + LL + + G L+
Sbjct: 735 DAEAFAALMADQGVTVLKIVPSHLQALLQASRVALPRPQRALVCGGEALQVDLLARVRAL 794
Query: 507 VDRFRIAQIGEFYGATE 523
R+ YG TE
Sbjct: 795 GPGARLINH---YGPTE 808
Score = 45.9 bits (109), Expect = 7e-05
Identities = 63/323 (19%), Positives = 112/323 (34%), Gaps = 42/323 (13%)
Query: 213 IFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV 272
+ + A +P V +F E T ++ +NR+A+ +A G+ V + +E E V
Sbjct: 1579 LIEDQAAATPEAVALVFGEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMV 1638
Query: 273 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKL 332
L + K G ++ + L + I +G+ + + L + L ++
Sbjct: 1639 VGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARL-----PLPDGLRS 1693
Query: 333 FSWSP-----DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL 387
+ S S+P V +P +L+Y IYTSG+TG
Sbjct: 1694 LVLDQEDDWLEGYSDSNP------------AVNLAPQNLAY---------VIYTSGSTGR 1732
Query: 388 PKAAVISNHRYYFLGGAIAYQIGFRTKDR--FYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
PK A + A D +T + LI G +VI
Sbjct: 1733 PKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELF---WPLINGARLVI 1789
Query: 446 RKKFSAS---NYFSDV-CKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF-GNGLRP 500
A + + + T ++ M + LL E+ E R++ G L
Sbjct: 1790 A-PPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLSLRRVVCGGEALEV 1848
Query: 501 QIWSEFVDRFRIAQIGEFYGATE 523
+ +++R + YG TE
Sbjct: 1849 EALRPWLERLPDTGLFNLYGPTE 1871
Score = 45.5 bits (108), Expect = 9e-05
Identities = 49/269 (18%), Positives = 99/269 (36%), Gaps = 35/269 (13%)
Query: 184 ALKSRALQRYLRFLWAARRVAQ-KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAY 242
+ +R + W A A + + + R+P +F + + + ++
Sbjct: 3070 PTLAAHERRQVLHAWNATAAAYPSERLVHQLIEAQVARTPEAPALVFGDQQLSYAELNRR 3129
Query: 243 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCIN 302
+NR+A+ +A G+ V + +E E + L + K G ++ + L + I
Sbjct: 3130 ANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIE 3189
Query: 303 IAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362
+GV + A L + + + + + ++ ++P R
Sbjct: 3190 DSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLNGYSE--NNPSTRVM------------ 3235
Query: 363 PPSLSYRVGVQDKLIYIYTSGTTGLPKAA-----VISNHRYYFLGGAIAYQIGFRTKDRF 417
+L+Y IYTSG+TG PK ++NH + A AY++ +
Sbjct: 3236 GENLAY---------VIYTSGSTGKPKGVGVRHGALANHLCWI---AEAYELDANDRVLL 3283
Query: 418 YTPLPLYHTAGGAMCIGQALIFGCCVVIR 446
+ + G LI G C+V+R
Sbjct: 3284 FMS---FSFDGAQERFLWTLICGGCLVVR 3309
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 56.5 bits (137), Expect = 2e-08
Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 30/163 (18%)
Query: 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL 292
+ QQ+ + +A A G+K+ +AL L+N ++V L + G++ I H
Sbjct: 2 SLSYQQLWQEVDLLAEQLRALGVKR---IALALDNSIDWVIADLACLQAGIVCIPIPHFF 58
Query: 293 RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 352
H +N AG I +D + +++L + +
Sbjct: 59 SAQQTQHLLNDAGADLLI-----SDD-PDAASALHTPFATLGEDL---------YIALRP 103
Query: 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISN 395
S E+P G K+ YTSG+TG PK +S
Sbjct: 104 SANPVELPA---------GTA-KI--TYTSGSTGQPKGVCLSA 134
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 56.4 bits (137), Expect = 2e-08
Identities = 48/225 (21%), Positives = 81/225 (36%), Gaps = 52/225 (23%)
Query: 233 EW-TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 291
EW + ++VE + + + A GLK GD + + ENRPE++ ++ +
Sbjct: 4 EWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDT 63
Query: 292 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQA 351
L + ++ + +N EIS VK++S+
Sbjct: 64 LGEEAIEYILNET----------------EISIVFCDAVKVYSFE--------------E 93
Query: 352 LSPL--LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI 409
L L ++VP +PP D +YTSGTTG PK ++++ I +
Sbjct: 94 LEELGKKNKVPPTPPKPE------DLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIV 147
Query: 410 G--FRTKDRFYTPLPLYH-----------TAGGAMCIGQALIFGC 441
D + + LPL H GG + G
Sbjct: 148 PEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGL 192
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 55.6 bits (134), Expect = 7e-08
Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 25/241 (10%)
Query: 183 PALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAY 242
P L + Q+ L L A+ D T+ +F A R+P F + +++A
Sbjct: 2163 PLLAAAEQQQLLDSLAGEAGEARLDQTLHGLFAAQAARTPQAPALTFAGQTLSYAELDAR 2222
Query: 243 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCIN 302
+NR+A +G+ V L LE E V L + K G ++ L + I
Sbjct: 2223 ANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIE 2282
Query: 303 IAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362
+G+ + L +A+ E+ + W + D + L+ +
Sbjct: 2283 DSGIGLLLSDRALFEALGELPAGVA------RWCLEDD------------AAALAAYSDA 2324
Query: 363 P-PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKD---RFY 418
P P LS Q + IYTSG+TG PK V+S+ A+ + G R D FY
Sbjct: 2325 PLPFLS---LPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCELHFY 2381
Query: 419 T 419
+
Sbjct: 2382 S 2382
Score = 39.4 bits (92), Expect = 0.007
Identities = 40/197 (20%), Positives = 78/197 (39%), Gaps = 31/197 (15%)
Query: 198 WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKK 257
W A + ++ E A ++P ++ +++ ++ A +NR+A++ +G+
Sbjct: 1121 WGQAPCAPAQAWLPELLNEQARQTPERIALVWDGGSLDYAELHAQANRLAHYLRDKGVGP 1180
Query: 258 GDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTD 317
VA+ E P+ + L + K G ++ + L + + +GV + + L +
Sbjct: 1181 DVCVAIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLE 1240
Query: 318 AVQE---ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQD 374
+ + +S ++ L SW P+ P L D
Sbjct: 1241 RLPQAEGVSAIALDSLHLDSW------------------------PSQAPGLHLH---GD 1273
Query: 375 KLIY-IYTSGTTGLPKA 390
L Y IYTSG+TG PK
Sbjct: 1274 NLAYVIYTSGSTGQPKG 1290
Score = 39.0 bits (91), Expect = 0.010
Identities = 64/269 (23%), Positives = 99/269 (36%), Gaps = 52/269 (19%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSN-----RVANFFLAQGLKKGDSVA 262
LT+ + A ++P+++ F + V +Y + R L GD
Sbjct: 9 LTLVQALQRRAAQTPDRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQARASFGDRAV 68
Query: 263 LMLENRPEFVCLWLGLSKLGVIT--ALINHNLR---QNSLLHCINIAGVSAFIYGAELTD 317
L+ + P++V + G GVI A + R Q LL I A + A+L D
Sbjct: 69 LLFPSGPDYVAAFFGCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVADLRD 128
Query: 318 AVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYR---VGVQD 374
++ ++ +N +P L V T P+L+ +Q
Sbjct: 129 SLLQMEELAAAN-----------------------APELLCVDTLDPALAEAWQEPALQP 165
Query: 375 KLIYI--YTSGTTGLPKAAVISNHRYYFLGGAI--AYQIGFRTKDRFYTPLPLYHTAGGA 430
I YTSG+T LPK +S+ I + I D + LPLYH G
Sbjct: 166 DDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPDDVIVSWLPLYHDMG-- 223
Query: 431 MCIGQAL--IFGC--CVVIRKKFSASNYF 455
IG L IF CV++ + YF
Sbjct: 224 -LIGGLLQPIFSGVPCVLM-----SPAYF 246
Score = 34.0 bits (78), Expect = 0.31
Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 20/188 (10%)
Query: 211 ADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 270
+F P ++ + +W+ ++ +NR+ + A G+ VAL+ E +
Sbjct: 3723 VRLFEAQVAAHPQRIAASCLDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLD 3782
Query: 271 FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNV 330
+ + +G K G ++ L L I ++ + A + + + LG
Sbjct: 3783 LLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCAN 3842
Query: 331 --KLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLP 388
+L W + + S P +L+Y IYTSG+TGLP
Sbjct: 3843 RPRLLVWE-EVQAGEVASHNPGIYS--------GPDNLAY---------VIYTSGSTGLP 3884
Query: 389 KAAVISNH 396
K ++
Sbjct: 3885 KGVMVEQR 3892
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 54.8 bits (132), Expect = 7e-08
Identities = 65/326 (19%), Positives = 125/326 (38%), Gaps = 46/326 (14%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
+ I +++HA PNK+ + T + +VAN+ L + K ++A++LEN
Sbjct: 1 MGITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANW-LNEKESKNKTIAILLEN 59
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA--VQEISTS 325
R EF+ L+ G + G ++ +Q+ L + I+ + T+ + ++
Sbjct: 60 RIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIV-----TERYKLNDLPDE 114
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGT 384
G +++ W + P+ + VQ+ Y+ +TSG+
Sbjct: 115 EGRVIEIDEWKRMIEKYL--------------------PTYAPIENVQNAPFYMGFTSGS 154
Query: 385 TGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHT--AGGAMCIGQALIFGCC 442
TG PKA + + + + + +D L H+ GA+ L G
Sbjct: 155 TGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAI---STLYVGQT 211
Query: 443 VVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQI 502
V + +KF + + +V + M L E N + +G +
Sbjct: 212 VHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENRVIE----NKMKIISSGAK--- 264
Query: 503 WS-----EFVDRFRIAQIGEFYGATE 523
W + + F A++ EFYGA+E
Sbjct: 265 WEAEAKEKIKNIFPYAKLYEFYGASE 290
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 54.9 bits (133), Expect = 8e-08
Identities = 57/235 (24%), Positives = 92/235 (39%), Gaps = 33/235 (14%)
Query: 232 TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHN 291
E + ++ + R+A G+K GD VA L N PE V L + +G I + + +
Sbjct: 85 REISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPD 144
Query: 292 LRQNSLLHCIN------IAGVSAFIYGA---ELTDAVQEISTSLGSNVKLFSWSPDTDSS 342
++L + V ++Y + + + EI L S ++ P S
Sbjct: 145 FGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS-LEAVVVVPYLSSD 203
Query: 343 SSPVPRS-QALSPLLSEVPTSPPSLSY-RVGVQDKLIYIYTSGTTGLPKAAVISNHRYYF 400
+ P AL+ L S L + R+ L +Y+SGTTGLPK V H
Sbjct: 204 AQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIV---HGA-- 258
Query: 401 LGGAIAYQI-------GFRTKDRFYTPLPLYHTAGGAMC---IGQALIFGCCVVI 445
GG + + R DR + Y+T G M + L+ G +V+
Sbjct: 259 -GGTLLQHLKEHGLHCDLRPGDRLF-----YYTTTGWMMWNWLVSGLLSGATLVL 307
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme
catalyzes the first step of the mevalonate pathway of
IPP biosynthesis. Most bacteria do not use this pathway,
but rather the deoxyxylulose pathway [Central
intermediary metabolism, Other].
Length = 652
Score = 54.5 bits (131), Expect = 1e-07
Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 36/242 (14%)
Query: 214 FREHAVR---SPNKVIFMFENTE---WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
+ E+ +R + ++++ E E T ++ +A A G++ GD V+ L N
Sbjct: 89 YAENLLRAAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPN 148
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCIN------IAGVSAFIYGAE---LTDA 318
P+ V L + +G I + + + +L + V + Y + D
Sbjct: 149 IPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDK 208
Query: 319 VQEISTSLGS--NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL 376
V E+ L + V + ++ + + + L + + ++ L
Sbjct: 209 VAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAELVFE-QLPFDHPL 267
Query: 377 IYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-------GFRTKDRFYTPLPLYHTAGG 429
+++SGTTGLPK V S GG + + DR Y+T G
Sbjct: 268 WILFSSGTTGLPKCIVHSA------GGTLVQHLKEHGLHCDLGPGDRL-----FYYTTTG 316
Query: 430 AM 431
M
Sbjct: 317 WM 318
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 54.1 bits (130), Expect = 1e-07
Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 18/218 (8%)
Query: 254 GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHC-INIAGVSAFIYG 312
G+++GD V L+L N F ++L + LG I +N + +SL + S +
Sbjct: 88 GVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPS---SSLGEIKKRVVDCSVGLAF 144
Query: 313 AELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV 372
+ V+++S LG V + D DS P+ L + P +
Sbjct: 145 TS-PENVEKLS-PLGVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVPKPV-----IKQ 197
Query: 373 QDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI-----AYQIGFRTKDRFY-TPLPLYHT 426
D +Y+SGTTG K V++ HR + A Q + D Y LP++H
Sbjct: 198 DDVAAIMYSSGTTGASKGVVLT-HRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHI 256
Query: 427 AGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCT 464
G ++ + L G +V+ ++F AS+ + ++K T
Sbjct: 257 YGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVT 294
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 53.1 bits (128), Expect = 2e-07
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 243 SNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCIN 302
+R+A +G++KGD VAL ++N P+FV + + + G + +N R+ L H +N
Sbjct: 11 VDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNREAELEHILN 70
Query: 303 IAGVSAFIYGAELTD 317
+G I G+EL D
Sbjct: 71 DSGARVLIVGSELDD 85
Score = 52.7 bits (127), Expect = 3e-07
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 18/146 (12%)
Query: 344 SPVPRSQALSPLLSEVPTSPPSLSYRVGV-----QDKLIYIYTSGTTGLPKAAVISNHR- 397
+P+ R L +L++ RV + D + YTSGTTGLPK + + HR
Sbjct: 57 NPMNREAELEHILNDSGA-------RVLIVGSELDDVAVIPYTSGTTGLPKGCMHT-HRT 108
Query: 398 --YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYF 455
A G LPL+H AG + + G +V+ ++
Sbjct: 109 VLATAAASAAWS--GLTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAA 166
Query: 456 SDVCKYKCTVGQYIGEMCRYLLSTPE 481
+ +Y+ T I M LL+ P
Sbjct: 167 RAIERYRVTHWTNIVTMVVDLLAHPR 192
Score = 37.3 bits (87), Expect = 0.023
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 122 GKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDR 177
G+IV P + GY N ++ + F + G F +GDL +D+ GY +F DR
Sbjct: 279 GEIVVRGPQ-VFKGYWNRPEATAESF--IELDGKRFFRTGDLGYIDEEGYFFFLDR 331
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 52.8 bits (127), Expect = 3e-07
Identities = 58/265 (21%), Positives = 99/265 (37%), Gaps = 39/265 (14%)
Query: 239 VEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLL 298
+ + R A A G++ GD VAL++ N F +LG +N + + +
Sbjct: 17 LAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIA 76
Query: 299 HCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPD---------TDSSSSPVPRS 349
+ + +G I A+L + L + V + S + + +P +
Sbjct: 77 YILEDSGARVLIAHADLLHGLASA---LPAGVTVLSVPTPPEIAAAYRISPALLTPPAGA 133
Query: 350 QALSPLLS-EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK-----------AAVISNHR 397
L+ + P P + + IYTSGTTG PK AA R
Sbjct: 134 IDWEGWLAQQEPYDGPPVPQPQSM------IYTSGTTGHPKGVRRAAPTPEQAAAAEQMR 187
Query: 398 YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSD 457
A+ Y G + R PLYH+A A + +A G +V++ +F
Sbjct: 188 ------ALIY--GLKPGIRALLTGPLYHSAPNAYGL-RAGRLGGVLVLQPRFDPEELLQL 238
Query: 458 VCKYKCTVGQYIGEMCRYLLSTPEK 482
+ +++ T + M LL PE+
Sbjct: 239 IERHRITHMHMVPTMFIRLLKLPEE 263
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 52.7 bits (127), Expect = 4e-07
Identities = 54/258 (20%), Positives = 102/258 (39%), Gaps = 39/258 (15%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFENT----EW---TAQQVEAYSNRVANFFLAQGLKKGD 259
+I + + A +P++ ++ + +W T + + + +A L GL G
Sbjct: 48 PRSIPHLLAKWAAEAPDRP-WLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGR 106
Query: 260 SVALMLENRPEFVCLWLGLSKLGVITA-------LINHNLRQNSLLHCINIAGVSAFIY- 311
V ++ N E + L + GV A L++H+ + L H ++ ++
Sbjct: 107 PVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAK--LKHLFDLVK-PRVVFA 163
Query: 312 --GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYR 369
GA A+ + +V + + + +S A +P + V + +++
Sbjct: 164 QSGAPFARALAALDLL---DVTVVHVTGPGEGIASIAFADLAATPPTAAVAAAIAAITPD 220
Query: 370 -VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTP------LP 422
V Y++TSG+TG+PK AVI+ R + IA Q R ++ P +P
Sbjct: 221 TVAK-----YLFTSGSTGMPK-AVINTQR--MMCANIAMQEQLRPREPDPPPPVSLDWMP 272
Query: 423 LYHTAGGAMCIGQALIFG 440
HT GG L G
Sbjct: 273 WNHTMGGNANFNGLLWGG 290
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 52.5 bits (127), Expect = 4e-07
Identities = 45/214 (21%), Positives = 72/214 (33%), Gaps = 54/214 (25%)
Query: 214 FREHAVR--SPNKVIFMFEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
+ E+ +R ++ +F E + ++ +A A G+ GD VA L
Sbjct: 88 YAENLLRHRRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLP 147
Query: 267 NRPEFVCLWLGLSKLGVI----------------------TALINHNLRQNSLLHCINIA 304
N PE V L + LG I LI
Sbjct: 148 NIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLI---------------- 191
Query: 305 GVSAFIYGA---ELTDAVQEISTSLGSNVKLFSWSPDTDSS--SSPVPRSQALSPLLSEV 359
V + YG + V E+ +L S ++ P + ++ +P + L+
Sbjct: 192 AVDGYRYGGKAFDRRAKVAELRAALPS-LEHVVVVPYLGPAAAAAALPGALLWEDFLAPA 250
Query: 360 PTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAV 392
+ V L +I Y+SGTTGLPK V
Sbjct: 251 EAAELEFE-PVPFDHPL-WILYSSGTTGLPKCIV 282
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 52.5 bits (126), Expect = 5e-07
Identities = 69/314 (21%), Positives = 114/314 (36%), Gaps = 42/314 (13%)
Query: 239 VEAYSNRV---ANFF-----LAQGL-----KKGDSVALMLENRPEFVCLWLGLSKLGVIT 285
V NR F LA GL + GD VA+ N ++ L ++ G I
Sbjct: 25 VTISGNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIV 84
Query: 286 ALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWS----PDTDS 341
A +N+ + + + + L ++ +L S ++ S
Sbjct: 85 APLNYRWSFEEAKSAMLLVRPVMLV----TDETCSSWYEELQND-RLPSLMWQVFLESPS 139
Query: 342 SSSPVPRSQALSPLLSEVPT-SPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYF 400
SS + + L+ + + L Y D ++ +TSGTTG PK IS H
Sbjct: 140 SSVFIFLNSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTIS-HS--- 195
Query: 401 LGGAIAYQ-------IGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASN 453
A+ Q +G+ D + PL H G + + L+ G C V+ KF A
Sbjct: 196 ---ALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAM-LMVGACHVLLPKFDAKA 251
Query: 454 YFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKA--HNVRLMF--GNGLRPQIWSEFVDR 509
+ ++ T + M L+S K +VR + G L ++ +
Sbjct: 252 ALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKL 311
Query: 510 FRIAQIGEFYGATE 523
F A++ YG TE
Sbjct: 312 FPNAKLFSAYGMTE 325
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 52.3 bits (126), Expect = 6e-07
Identities = 65/278 (23%), Positives = 97/278 (34%), Gaps = 40/278 (14%)
Query: 198 WAARRVAQKDLTIADIFREHAVRSPNKVIFMF--------ENTEWTAQQVEAYSNRVANF 249
AAR + + ++ A R P+ F WT ++ A R AN
Sbjct: 18 LAARDLPA---STYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANL 74
Query: 250 FLAQGLKKGDSVALMLENRPE-FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSA 308
+ G+ GD VA +L N PE LW G + I IN L + + AG
Sbjct: 75 LHSLGVGPGDVVAFLLPNLPETHFALWGG--EAAGIANPINPLLEPEQIAELLRAAGAKV 132
Query: 309 FI-YG-----------AELTDAVQEIST--SLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354
+ G AE+ A+ E+ T + L ++ L
Sbjct: 133 LVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILD- 191
Query: 355 LLSEVPTSPPSLSY---RVGVQDKLIYIYTSGTTGLPKAAVISNHRY---YFLGGAIAYQ 408
+E+ P + +G D Y +T GTTG+PK A H + A
Sbjct: 192 FDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQ---HTHGNEVANAWLGALL 248
Query: 409 IGFRTKDRFYTPLPLYHTAGGAMCIG-QALIFGCCVVI 445
+G D + LPL+H + G L G VV+
Sbjct: 249 LGLGPGDTVFCGLPLFHV-NALLVTGLAPLARGAHVVL 285
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 51.5 bits (124), Expect = 6e-07
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 6/149 (4%)
Query: 379 IYTSGTTGLPKAAVISNHRYYFLG-GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQAL 437
IYTSG+TG PK ++S HR G +IA + DR LP G + A
Sbjct: 8 IYTSGSTGEPKGVMLS-HRNLTAGARSIAQYLELTEDDRILAVLPFSFDY-GLSQLLTAF 65
Query: 438 IFGCCVVIRKKFS-ASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF-- 494
G +V+ +F+ + + K + T + LL + ++R +
Sbjct: 66 RVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSLRYLTNA 125
Query: 495 GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
G L + + F A++ YG TE
Sbjct: 126 GGALPAKTILQLRRAFPDAKLFSMYGLTE 154
Score = 45.7 bits (109), Expect = 4e-05
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 107 NKKGLCSRCEPGVFIGKIVPSNPARA---YLGYVNEKDSAKKIFTDVFEIGDSAFLSGDL 163
++ G +RC PG +G++V R GY N+ ++ + G+ +GDL
Sbjct: 186 DEDG--NRCAPGE-VGELV----HRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDL 238
Query: 164 LVMDKWGYLYFKDRTGDTFPALKSR 188
+ MD+ GYLYF R D +K+R
Sbjct: 239 VRMDEEGYLYFVGRKDDM---IKTR 260
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 52.0 bits (125), Expect = 6e-07
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW---LGLSKLGVITA 286
++ Q+ SNRVANF G+++GD V LML N PE LW L KLG +
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPE---LWEAMLAAIKLGAVVI 53
Score = 35.8 bits (83), Expect = 0.062
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 374 DKLIYIYTSGTTGLPKAAVISNHRYYFLGG-AIAYQIGFRTKD 415
D ++ +TSGTTGLPK V+ H Y +G + Y IG + D
Sbjct: 85 DPILLYFTSGTTGLPK-LVLHTHVSYPVGHLSTMYWIGLQPGD 126
Score = 34.3 bits (79), Expect = 0.18
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 116 EPGVFIGKI---VPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYL 172
E V G+I + P LGY+ + + F + + +GD D+ GYL
Sbjct: 271 EIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGY------YRTGDKAYRDEDGYL 324
Query: 173 YFKDRTGDTF 182
+F R D F
Sbjct: 325 WFVGRADDVF 334
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 51.8 bits (125), Expect = 6e-07
Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 35/168 (20%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNL- 292
T ++ +N +A A G+ GD VA+++ E + LG+ G I+ +
Sbjct: 13 LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72
Query: 293 --RQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQ 350
R+ ++L AG A + L + +
Sbjct: 73 AERRAAILA---RAGARAVLTDPGLAQPEEAPDLLV------------------------ 105
Query: 351 ALSPLLSEVPTSPPSLSYRVGVQDKLIY-IYTSGTTGLPKAAVISNHR 397
P+ D L Y I+TSG+TG PK +I+ HR
Sbjct: 106 ---VADDAAAAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMIT-HR 149
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 51.9 bits (125), Expect = 6e-07
Identities = 48/186 (25%), Positives = 72/186 (38%), Gaps = 28/186 (15%)
Query: 251 LAQGLKKGDSVALMLENRPEFV-----CLWLGL--SKLGVITALINHNLRQNSLLHCINI 303
LA GLK GD VAL+ E +FV C + GL L + L +
Sbjct: 67 LALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLAS 126
Query: 304 AGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP 363
A +A I EL V E + + + S + P AL +P
Sbjct: 127 AQPAAIITPDELLPWVNEATHGNPL-LHVLSH---AWFKALPEADV-ALPRP------TP 175
Query: 364 PSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ-IGFRTKDRFYTPLP 422
++Y +Q Y+SG+T P+ +I++ AI++ + R DR + LP
Sbjct: 176 DDIAY---LQ------YSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLP 226
Query: 423 LYHTAG 428
YH G
Sbjct: 227 FYHDMG 232
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 52.0 bits (125), Expect = 7e-07
Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 37/222 (16%)
Query: 244 NRVANF---FLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHC 300
RV NF +A G K + VA+ + R E++ G + + I +L + +L H
Sbjct: 114 ERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHS 173
Query: 301 INIAGVSAFIYGAELTDAVQEISTSLGS--NVKLFSWSPDTDSSSSPVPRSQALSPL--- 355
+N V+ I ++ + +IS+ L + V SS + +S
Sbjct: 174 LNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEV 233
Query: 356 --LSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT 413
L + P L + + +YTSG+TGLPK ++++ G +A G T
Sbjct: 234 EKLGKENPVDPDLPSPNDIA---VIMYTSGSTGLPKGVMMTH------GNIVATVAGVMT 284
Query: 414 -------KDRFYTPLPLYH-----------TAGGAMCIGQAL 437
D + LPL H G A+ G L
Sbjct: 285 VVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPL 326
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 51.7 bits (124), Expect = 8e-07
Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 24/179 (13%)
Query: 216 EHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275
A P + + ++ E T QQ++ S+R+A F + L K + + P + +
Sbjct: 8 AFAETYPQTIAYRYQGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAF 67
Query: 276 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSW 335
LG K G ++ ++ + I AG I+ AEL+
Sbjct: 68 LGSIKSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELS------------------- 108
Query: 336 SPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS 394
D+ + + AL + P S + V D IYTSG+TG PK IS
Sbjct: 109 ---IDAVGTQIITLSALEQAETS--GGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQIS 162
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 51.2 bits (122), Expect = 1e-06
Identities = 72/320 (22%), Positives = 121/320 (37%), Gaps = 18/320 (5%)
Query: 222 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281
PN+ ++ T +T Q R+A ++ + K D V+++ N P + +
Sbjct: 28 PNRTSIIYGKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMA 87
Query: 282 GVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG---SNVKL-FSWSP 337
G + IN L S+ + A +E+ L SN+ L +
Sbjct: 88 GAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIH 147
Query: 338 DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI---YTSGTTGLPKAAVIS 394
+ D P L+ +P ++ +QD+ I YTSGTT PK VIS
Sbjct: 148 EIDFPKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVIS 207
Query: 395 NHRYYF--LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSAS 452
+ Y L I +++G T + LP++H G G A G V +R +A
Sbjct: 208 HRGAYLSTLSAIIGWEMG--TCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMR-HVTAP 264
Query: 453 NYFSDVCKYKCTVGQYIGEMCRYLL---STPEKPEDKAHNVRLMFGNGLRPQIWSEFVDR 509
+ ++ + T + + LL S P ++ V ++ G P + V R
Sbjct: 265 EIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSP--RSGPVHVLTGGSPPPAALVKKVQR 322
Query: 510 FRIAQIGEFYGATEGMAAIL 529
Q+ YG TE +L
Sbjct: 323 LGF-QVMHAYGLTEATGPVL 341
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 51.0 bits (122), Expect = 1e-06
Identities = 67/338 (19%), Positives = 131/338 (38%), Gaps = 25/338 (7%)
Query: 223 NKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282
K F+ + + + ++EA R+ G+K+ + V L++ + +F +LG + G
Sbjct: 20 GKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAG 79
Query: 283 VITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSS 342
++ +N L + + + + EL ++
Sbjct: 80 IVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVV------VG 133
Query: 343 SSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLG 402
Q L +E P+ + D ++Y+SG+TG+PK V ++ Y+
Sbjct: 134 RPEAGEVQLAELLATESEQFKPAATQ---ADDPAFWLYSSGSTGMPKGVVHTHSNPYWTA 190
Query: 403 GAIAYQ-IGFRTKDRFYTPLPLYHTAGGAMCIGQALIF----GCCVVIR-KKFSASNYFS 456
A +G R D ++ L+ G +G AL F G V+ ++ + F
Sbjct: 191 ELYARNTLGIREDDVVFSAAKLFFAYG----LGNALTFPMSVGATTVLMGERPTPDAVFD 246
Query: 457 DVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDRFRIAQ 514
+ +++ T+ + + +L+ P P + +RL G L ++ + RF +
Sbjct: 247 RLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGV-D 305
Query: 515 IGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYA 552
I + G+TE M I N DV + G K +P Y
Sbjct: 306 IVDGIGSTE-MLHIFLSNLPGDVRYGTSG--KPVPGYR 340
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 50.6 bits (121), Expect = 2e-06
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 230 ENTEWTAQQVEAYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288
+ +W+ +++ + S + AN A GL++GD VA++L PE+ + + + G++
Sbjct: 38 DEVKWSFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPG 97
Query: 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS-NVKLFSWSPDTDSSSSPVP 347
L +L+ + + + EL AV I++ S KL S
Sbjct: 98 TIQLTAKDILYRLQASKAKCIVTSDELAPAVDSIASECPSLKTKLLV---------SEHS 148
Query: 348 RSQALS--PLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAI 405
R L+ LL E S + Q+ + +TSGTTG PK A H + LG
Sbjct: 149 RDGWLNFKELLKE--ASTEHTCVKTKSQEPMAIYFTSGTTGFPKMA---EHSHSSLG--- 200
Query: 406 AYQIGFRTKDRFYTPL 421
+G + R++ L
Sbjct: 201 ---LGLKVNGRYWLDL 213
Score = 29.0 bits (65), Expect = 9.1
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 123 KIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 180
++ P+ P + YV+ + T GD +++GD +MD+ GY +F R D
Sbjct: 375 RVKPTRPFCLFSCYVDNPEK-----TAATIRGD-FYITGDRGIMDEDGYFWFVGRADD 426
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 50.5 bits (120), Expect = 2e-06
Identities = 39/238 (16%), Positives = 71/238 (29%), Gaps = 13/238 (5%)
Query: 229 FENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI 288
E T +V + R+ A G+ GD VA + N + + + +G +
Sbjct: 20 GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 79
Query: 289 NHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPR 348
N L + + +N A ++ L V+ V
Sbjct: 80 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA-IRGELKTV--------QHFVVMDEKA 130
Query: 349 SQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY- 407
+ + + V + YT+GTTGLPK V S+ A +
Sbjct: 131 PEGYLAYEEALGEEADPVR--VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV 188
Query: 408 -QIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCT 464
KD +P++H + L+ V+ + ++ T
Sbjct: 189 DGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVT 246
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 50.1 bits (121), Expect = 2e-06
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 222 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281
P+ V +F + T +++ +NR+A++ A+G+ GD VA+ LE PE V L + K
Sbjct: 1 PDAVAVVFGDQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKA 60
Query: 282 G 282
G
Sbjct: 61 G 61
Score = 38.2 bits (90), Expect = 0.013
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 379 IYTSGTTGLPKAAVISNHR 397
IYTSG+TG PK ++ HR
Sbjct: 99 IYTSGSTGRPKGVMVE-HR 116
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 50.0 bits (120), Expect = 2e-06
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 233 EWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284
WT ++ NR+A+ A GL KGD V + + PE V L ++K+G I
Sbjct: 7 TWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58
Score = 35.3 bits (82), Expect = 0.10
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 374 DKLIYIYTSGTTGLPKAAVISNHRYYFLGGA--IAYQIGFRTKDRFYTPLPLYHTAGGAM 431
D + IYTSGTTG PK V + H + + A I + + DR + G +
Sbjct: 101 DPAMIIYTSGTTGKPKGTVHT-HAGFPVKAAKDIGFCFDLKPGDRLLWITDMGWMMGPWL 159
Query: 432 CIGQALIFGCCVV 444
+G L+ G +V
Sbjct: 160 VLG-GLLLGATIV 171
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 49.9 bits (119), Expect = 3e-06
Identities = 57/252 (22%), Positives = 94/252 (37%), Gaps = 17/252 (6%)
Query: 197 LWAARRVAQK------DLTIADIFREHAVRSPNKVIFMF------ENTEWTAQQVEAYSN 244
L A RR A K D TI D F P+K ++ ++++ +
Sbjct: 5 LLAPRRAASKAAGLWRDRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVD 64
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIA 304
R+A G+ +GD V+ L NR EF L+L +++G + + R+ L +N A
Sbjct: 65 RIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHA 124
Query: 305 GVSAFIYGAELTDAVQE-ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP 363
F+ + ++ L S + D ++P + P +
Sbjct: 125 DSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPERDDTPDAA 184
Query: 364 PSLS-YRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLP 422
L+ R D IYTSGTTG PK + + + + A ++ D P
Sbjct: 185 AILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASP 244
Query: 423 LYHTAG---GAM 431
+ H G G M
Sbjct: 245 MAHQTGFMYGLM 256
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 49.2 bits (117), Expect = 4e-06
Identities = 64/276 (23%), Positives = 114/276 (41%), Gaps = 27/276 (9%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 268
T+ D+ + A + F + T ++EA + A L G K SVAL L N
Sbjct: 22 TLPDLLSKAAADYGPRPALEFRDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNT 81
Query: 269 PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI---YGAELTDAVQEISTS 325
P+ + G K G ++ + +L H ++ +G I A L A++ +
Sbjct: 82 PDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKG 141
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT--------SPPSLSYRVGVQDKLI 377
L + + D + V QA P + T + P+ V D +
Sbjct: 142 LLDRLIVCE-----DDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWPAVTPDDVAL 196
Query: 378 YIYTSGTTGLPKAAVISNHRYYFLGGAIA-YQI-GFRTK------DRFYTPLPLYHTAGG 429
YT GTTGLPK A++++ L A++ Y + G ++ +R LPL+H
Sbjct: 197 LQYTGGTTGLPKGAMLTHGN---LTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYAL 253
Query: 430 AMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTV 465
+ + ++L G + + ++F + F D+ + + TV
Sbjct: 254 TVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATV 289
Score = 29.9 bits (67), Expect = 4.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 135 GYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 180
GY N + + + F +GD FL+GD+ MD GY + DR D
Sbjct: 406 GYWNRPEESAEAF-----VGDR-FLTGDIGYMDTDGYFFLVDRKKD 445
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 48.9 bits (117), Expect = 5e-06
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T ++++ S+R+A A G++KGD V LM+ + L L K+G + LI+ + +
Sbjct: 4 TFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGMGR 63
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS 328
L C+ A AFI G D I + GS
Sbjct: 64 KHLGRCLEEAEPDAFI-GIPKADDPAAILFTSGS 96
Score = 33.1 bits (76), Expect = 0.42
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM 431
++TSG+TG PK V ++ + A+ G R DR P + G A+
Sbjct: 91 LFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRDLAAFPPFALFGPAL 143
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 48.8 bits (117), Expect = 6e-06
Identities = 68/319 (21%), Positives = 112/319 (35%), Gaps = 75/319 (23%)
Query: 235 TAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVCLWLGLSKLGVI--------- 284
T ++++ +NR+A A G+ GD VA++LE E V L + K G
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 285 TALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSS 344
+ L AG + + L + + + L D+ +
Sbjct: 61 AERLAFILED---------AGARLLLTDSALASRLAGLVLPVILLDPLELA-ALDDAPAP 110
Query: 345 PVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR--YYFLG 402
P P + P+ P L+Y IYTSG+TG PK V++ HR L
Sbjct: 111 PPPDA----------PSGPDDLAY---------VIYTSGSTGRPKGVVVT-HRSLVNLLA 150
Query: 403 GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ---ALIFGCCVVI----RKKFSASNYF 455
G DR + + + + AL+ G +V+ ++ A+
Sbjct: 151 WLARR-YGLDPDDRV----LQFASLSFDASVEEIFGALLAGATLVVPPEDEERDDAALLA 205
Query: 456 SDVCKYKCTVGQYIGEMCRYLLSTP--------EKPEDKAHNVRLMFGNG--LRPQIWSE 505
+ + ++ TV L TP P A +RL+ G L P +
Sbjct: 206 ALIAEHPVTV----------LNLTPSLLALLAAALPPALAS-LRLVILGGEALTPALVDR 254
Query: 506 FVDRFRIAQIGEFYGATEG 524
+ R A++ YG TE
Sbjct: 255 WRARGPGARLINLYGPTET 273
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 48.7 bits (116), Expect = 7e-06
Identities = 77/337 (22%), Positives = 134/337 (39%), Gaps = 64/337 (18%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLEN 267
T+A++F + ++ + T ++ + + A + L + LKKGD VALM+ N
Sbjct: 26 TVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPN 85
Query: 268 RPEFVCLWLGLSKLGVITA---LINHN--LRQNSLLHCINIAGVSAFIYGAELTDAVQE- 321
CL ++ GV+ A ++N N L H + +G S + VQ+
Sbjct: 86 -----CLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQV 140
Query: 322 ---------ISTSLGS-----NVKLFSWS--------PDTDSSSSPVPRSQALSPLLSEV 359
I+T LG L ++ P+ + + + +AL+ L
Sbjct: 141 IADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEYRINGA-IRFREALA--LGRK 197
Query: 360 PTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR---------YYFLGGAIAYQIG 410
+ P ++ D YT GTTG+ K A+++ HR + +L G + G
Sbjct: 198 HSMPT---LQIEPDDIAFLQYTGGTTGVAKGAMLT-HRNLVANMQQAHQWLAGTGKLEEG 253
Query: 411 FRTKDRFYTPLPLYH----TAGGA--MCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCT 464
+ T LPLYH TA G M IG GC +I + ++ K + T
Sbjct: 254 ---CEVVITALPLYHIFALTANGLVFMKIG-----GCNHLISNPRDMPGFVKELKKTRFT 305
Query: 465 VGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQ 501
+ + LL+TP + ++++ G G+ Q
Sbjct: 306 AFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQ 342
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 48.4 bits (115), Expect = 1e-05
Identities = 67/353 (18%), Positives = 127/353 (35%), Gaps = 42/353 (11%)
Query: 182 FPALKSRALQRYLRFLWA---ARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQ 238
L+ QR + LW A A + + E A +P+ V +F+ + T +
Sbjct: 4525 LQLLEKAEQQRIV-ALWNRTDAGYPAT--RCVHQLVAERARMTPDAVAVVFDEEKLTYAE 4581
Query: 239 VEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLL 298
+ +NR+A+ +A+G+ V + +E E + L + K G ++ + L
Sbjct: 4582 LNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYPRERLA 4641
Query: 299 HCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSE 358
+ + +G + + + L + + + + D D P A P
Sbjct: 4642 YMMEDSGAALLLTQSHLLQRL-----PIPDGLASLALDRDEDWEGFP-----AHDP---A 4688
Query: 359 VPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS-----NHRYYFLGGAIAYQIGFRT 413
V P +L+Y IYTSG+TG PK +S NH + Y++
Sbjct: 4689 VRLHPDNLAY---------VIYTSGSTGRPKGVAVSHGSLVNHLHATGE---RYELTPDD 4736
Query: 414 KDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK--FSASNYFSDVCKYKCTVGQYIGE 471
+ + + G LI G VVIR + ++++ +++ TV +
Sbjct: 4737 RVLQFMSFSFDGSHEGLY---HPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPV 4793
Query: 472 MCRYLLSTPEKPEDKAHNVRLMF-GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
+ L E+ + F G + + + + YG TE
Sbjct: 4794 YLQQLAEHAERDGEPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTE 4846
Score = 45.3 bits (107), Expect = 1e-04
Identities = 46/211 (21%), Positives = 82/211 (38%), Gaps = 33/211 (15%)
Query: 184 ALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYS 243
A R + Y R +R+A E A R+P + +F + + ++++ +
Sbjct: 1990 ADWDRTPEAYPRGPGVHQRIA-----------EQAARAPEAIAVVFGDQHLSYAELDSRA 2038
Query: 244 NRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINI 303
NR+A+ A+G+ VA+ E E V L + K G ++ N L + +
Sbjct: 2039 NRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYPAERLAYMLED 2098
Query: 304 AGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSP 363
+G + + L + + L + V D + + P V +
Sbjct: 2099 SGAALLLTQRHLLERL-----PLPAGVARLPLDRDAEWADYPDTA--------PAVQLAG 2145
Query: 364 PSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS 394
+L+Y IYTSG+TGLPK +S
Sbjct: 2146 ENLAY---------VIYTSGSTGLPKGVAVS 2167
Score = 43.8 bits (103), Expect = 3e-04
Identities = 42/219 (19%), Positives = 72/219 (32%), Gaps = 24/219 (10%)
Query: 180 DTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQV 239
D P L + + + A + +F E R+P F ++
Sbjct: 483 DELPMLDAEERGQLVEGWNATAAEYPLQRGVHRLFEEQVERTPEAPALAFGEETLDYAEL 542
Query: 240 EAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLH 299
+NR+A+ + +G+ V + +E E V L + K G ++ L +
Sbjct: 543 NRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAY 602
Query: 300 CINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 359
+ +GV + + L ++ + G V + L
Sbjct: 603 MLEDSGVQLLLSQSHLGR---KLPLAAGVQVLDLD----------------RPAAWLEGY 643
Query: 360 PTSPPSLSYRVGVQDKLIY-IYTSGTTGLPKAAVISNHR 397
P + L Y IYTSG+TG PK A HR
Sbjct: 644 SEENPGTEL---NPENLAYVIYTSGSTGKPKGAGNR-HR 678
Score = 39.2 bits (91), Expect = 0.008
Identities = 49/270 (18%), Positives = 93/270 (34%), Gaps = 27/270 (10%)
Query: 177 RTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTA 236
R+ D L + + L A + + +F E R+P+ V F +
Sbjct: 3026 RSVDELAMLDAEERGQLLEAWNATAAEYPLERGVHRLFEEQVERTPDAVALAFGEQRLSY 3085
Query: 237 QQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNS 296
++ +NR+A+ + +G+ V + +E E V L + K G ++ +
Sbjct: 3086 AELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEER 3145
Query: 297 LLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLL 356
L + + +G L+ + + + G V + + ++P
Sbjct: 3146 LAYMLEDSGAQLL-----LSQSHLRLPLAQGVQVLDLDRGDENYAEANP----------- 3189
Query: 357 SEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDR 416
+ T P +L+Y IYTSG+TG PK I + + G DR
Sbjct: 3190 -AIRTMPENLAY---------VIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDR 3239
Query: 417 FYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446
+ + L+ G VV+
Sbjct: 3240 VLQFTT-FSFDVFVEELFWPLMSGARVVLA 3268
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 47.7 bits (113), Expect = 1e-05
Identities = 76/333 (22%), Positives = 128/333 (38%), Gaps = 30/333 (9%)
Query: 216 EHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275
+ A R P K F + T R AN+ G++KGD VA+ML N P+ V +
Sbjct: 32 QMASRYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGY 91
Query: 276 LGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSW 335
G G I N + L + ++ +G + D V T++ S K+
Sbjct: 92 YGTLLAGGIVVQTNPLYTERELEYQLHDSGAKVIL----CLDLVFPRVTNVQSATKIEHV 147
Query: 336 SPDTDSSSSPVPRS-------QALSPLLSEVPTSPP-----SLSYRVGV---------QD 374
+ P P++ + S L+ +V S S+ V D
Sbjct: 148 IVTRIADFLPFPKNLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPEND 207
Query: 375 KLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDR---FYTPLPLYHTAGGAM 431
+ YT GTTG PK +++ H+ + Q + K+ LP +H G
Sbjct: 208 LALLQYTGGTTGFPKGVMLT-HKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTA 266
Query: 432 CIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVR 491
+ +++ G +V+ KF F + K+K T+ + LL++P E ++R
Sbjct: 267 VMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIR 326
Query: 492 -LMFGNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
+ G+ P E + ++ E YG TE
Sbjct: 327 ACISGSAPLPVEVQEKFETVTGGKLVEGYGLTE 359
Score = 32.7 bits (74), Expect = 0.72
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 16/134 (11%)
Query: 121 IGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 180
IG+IV P + GY N+ + + D + +GD+ MD+ G+ Y KDR D
Sbjct: 403 IGEIVVKGP-QIMKGYWNKPEETAAVLQDGW------LHTGDVGYMDEDGFFYVKDRKKD 455
Query: 181 TFPALKSRALQRYLRFLWAARRVAQKDLTIA--DIFREHAVRSPNKVIFMFENTEWTAQQ 238
A R + + Q+ +TI D +R V++ + + E TE + ++
Sbjct: 456 MIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKA---FVVLKEGTECSEEE 512
Query: 239 VEAYSNRVANFFLA 252
+ N+ A +LA
Sbjct: 513 L----NQFARKYLA 522
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 47.4 bits (113), Expect = 2e-05
Identities = 48/197 (24%), Positives = 79/197 (40%), Gaps = 12/197 (6%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T Q+ + +V+ G+K GD VA + N + W G+ +G I +N L
Sbjct: 41 TYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFP 100
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSP---VPRSQA 351
+ IN A I +++I+ L S V+ + TD++ P + + A
Sbjct: 101 EQIAWIINHAEDRVVITDLTFVPILEKIADKLPS-VERYVVL--TDAAHMPQTTLKNAVA 157
Query: 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQ--- 408
++E ++ + Y TSGTTG PK + S HR L +A
Sbjct: 158 YEEWIAEADGDFAWKTFDENTAAGMCY--TSGTTGDPKGVLYS-HRSNVLHALMANNGDA 214
Query: 409 IGFRTKDRFYTPLPLYH 425
+G D +PL+H
Sbjct: 215 LGTSAADTMLPVVPLFH 231
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 46.6 bits (111), Expect = 3e-05
Identities = 49/211 (23%), Positives = 77/211 (36%), Gaps = 45/211 (21%)
Query: 240 EAYSNRVA--NFFLAQGLKKGDSVALMLENRPEFVCLWLGLSK-----------LG--VI 284
EA + R A + + G+ KG V L NRPE++ + S LG +
Sbjct: 83 EAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAV 142
Query: 285 TALINHNLRQ---------NSLLHCIN-IAGVSAFIYGAELTDAVQEISTSLGSNVKLFS 334
++NH N+LL C++ I V + + + S G+ V++ +
Sbjct: 143 KFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLP--SLPSGTGVEIVT 200
Query: 335 WSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVIS 394
+S +Q S P P +D YTSGTTG PK V++
Sbjct: 201 YS---------KLLAQGRSSPQPFRPPKP---------EDVATICYTSGTTGTPKGVVLT 242
Query: 395 NHRYYFLGGAIAYQIGFRTKDRFYTPLPLYH 425
+ + F D + LPL H
Sbjct: 243 HGNLIANVAGSSLSTKFYPSDVHISYLPLAH 273
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 45.1 bits (107), Expect = 8e-05
Identities = 53/249 (21%), Positives = 89/249 (35%), Gaps = 74/249 (29%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
T +Q + A FL GL++ SV ++ N PE+ ++ +G I A
Sbjct: 9 LTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWF-----IAAVGAIFA------- 56
Query: 294 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNV----------------------- 330
G++ IY +A Q ++ + +N+
Sbjct: 57 ----------GGIAVGIYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLK 106
Query: 331 --------------KLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL 376
L+SW + S +P Q + + S+ P +L
Sbjct: 107 AIIQYREPLKEKEPNLYSWKEFMELGRS-IPDEQLDAIIESQKPNQCCTL---------- 155
Query: 377 IYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRT--KDRFYTPLPLYHTAGGAMCIG 434
IYTSGTTG+PK ++S+ + A + RT ++ + LPL H A + I
Sbjct: 156 --IYTSGTTGMPKGVMLSHDNITWTAKAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIW 213
Query: 435 QALIFGCCV 443
+ G CV
Sbjct: 214 LPISVGGCV 222
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 44.6 bits (106), Expect = 1e-04
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 200 ARRVAQK----DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGL 255
ARR +K DL + DI HA + + + + +++ +++ S+ +A QG+
Sbjct: 13 ARRYREKGYWQDLPLTDILTRHA--ASDAIAVICGERQFSYRELNQASDNLACSLRRQGI 70
Query: 256 KKGDSVALMLENRPEFVCLWLGLSKLGV--ITALINHN 291
K GD+ + L N EF + L KLGV + AL +H
Sbjct: 71 KPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQ 108
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 44.4 bits (105), Expect = 2e-04
Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 22/194 (11%)
Query: 254 GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGA 313
G+ V M+ N E + + ++ +G + +N L + ++H IN A +
Sbjct: 60 GITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADP 119
Query: 314 ELTDAVQEISTSL-GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV 372
L + + EI +F D DS+++ +P + + + +
Sbjct: 120 RLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDWPELD 179
Query: 373 QDKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAM 431
+ I Y++GTTG PK V S HR +L + RT D
Sbjct: 180 ETTAAAICYSTGTTGAPKGVVYS-HRSLYLQS-----LSLRTTDSL-------------- 219
Query: 432 CIGQALIFGCCVVI 445
+ F CCV I
Sbjct: 220 AVTHGESFLCCVPI 233
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 44.0 bits (104), Expect = 2e-04
Identities = 48/245 (19%), Positives = 84/245 (34%), Gaps = 45/245 (18%)
Query: 217 HAVRSPNKV--IFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCL 274
HA P ++ + + WT +++A R+A +G G+ +A++ N V L
Sbjct: 4 HARLQPQRLAAVDLALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVAL 63
Query: 275 WLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE----LTDAVQEISTSLGSNV 330
+++G I +N L + L A + AE L D + ++
Sbjct: 64 HFACARVGAIYVPLNWRLSASEL---------DALLQDAEPRLLLGDDAVAAGRTDVEDL 114
Query: 331 KLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKA 390
F S D + P P SL ++TSGT+G PK
Sbjct: 115 AAFIASAD---ALEPADTPSI--------PPERVSL-----------ILFTSGTSGQPKG 152
Query: 391 AVISNHRYYFLGGAIAYQIGFRTK----DRFYTPLPLYHTAGGAMCIGQALIFGCCVVIR 446
++S A+ G + F P++H G + L G +++
Sbjct: 153 VMLSERNLQ----QTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVS 208
Query: 447 KKFSA 451
F
Sbjct: 209 NGFEP 213
Score = 32.9 bits (75), Expect = 0.60
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 115 CEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYF 174
C GV G+++ P GY + + FT GD F +GD+ D G+ +
Sbjct: 327 CPAGV-PGELLLRGP-NLSPGYWRRPQATARAFT-----GDGWFRTGDIARRDADGFFWV 379
Query: 175 KDRTGDTF 182
DR D F
Sbjct: 380 VDRKKDMF 387
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 43.6 bits (103), Expect = 2e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284
+ ++ S RVAN G+K GD VA +L PE V L ++G I
Sbjct: 2 SYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAI 51
Score = 40.1 bits (94), Expect = 0.003
Identities = 52/223 (23%), Positives = 83/223 (37%), Gaps = 47/223 (21%)
Query: 363 PPSLSYRVGVQD-KLIY----------------IYTSGTTGLPK------AAVISNHRYY 399
P ++ YR+G K++ +YTSGTTGLPK A+ + + Y
Sbjct: 61 PKAIEYRLGHSGAKVVVTNAANRGKLDDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAY- 119
Query: 400 FLGGAIAYQIGFRTKDRFY-TPLP-----LYHTAGGAMCIGQALIFGCCVVIRKKFSASN 453
+ Y I R D F+ P LY+ G + +G +F + F+A N
Sbjct: 120 -----MRYAIDLRDDDVFWNIADPGWAYGLYYAITGPLAMGITTVF-----LEGGFTAEN 169
Query: 454 YFSDVCKYKCTVGQYIGEMCRYLLSTP-EKPEDKAHNVRLMFGNG--LRPQIWSEFVDRF 510
+ + + T R L++ + +R+ G L P++ +
Sbjct: 170 TYDVLERLGVTNFAGSPTAYRMLMAAGADAAARIKLKLRVASSAGEPLNPEV-VRWFQAN 228
Query: 511 RIAQIGEFYGATE-GMAAILDINKSLDVSAVSEGIKKALPSYA 552
I + YG TE GM + +V A S G LP Y
Sbjct: 229 LGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMG--LPLPGYR 269
Score = 29.0 bits (65), Expect = 9.2
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 116 EPGVFIGKIVPSNPARAYLGYV-NEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYF 174
EPG + V S+P + GY + + +A+ I +++GDL+ D+ GY +F
Sbjct: 284 EPGQ-LAIDVASSPLLWFSGYWDDPEKTAELIA-------GRWYVTGDLVERDEDGYFWF 335
Query: 175 KDRTGD 180
R D
Sbjct: 336 IGRADD 341
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 43.3 bits (103), Expect = 3e-04
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 222 PNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKL 281
P+ + ++ + +++ SN++A A G+ GD V ++LE + V L + K
Sbjct: 1 PDAIALRDDDRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKA 60
Query: 282 G 282
G
Sbjct: 61 G 61
Score = 34.1 bits (79), Expect = 0.20
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 374 DKLIY-IYTSGTTGLPKAAVISNHR--YYFLGGAIAYQIGFRTKDRF 417
D L Y IYTSG+TG PK +S HR FL ++A + G DR
Sbjct: 93 DDLAYVIYTSGSTGKPKGVEVS-HRALVNFL-LSMARRPGLGASDRL 137
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 41.9 bits (98), Expect = 9e-04
Identities = 60/320 (18%), Positives = 114/320 (35%), Gaps = 39/320 (12%)
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 277
A R P + + ++ + ++++ + +A G+ G +V +M N FV
Sbjct: 45 AARWPGRTAIIDDDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFA 104
Query: 278 LSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSP 337
+ LG I+ R ++L + +S + E + + V + +
Sbjct: 105 VGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERI----AGADDAVAVIDPAT 160
Query: 338 DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 397
S P + P I + TSGTTG PK +
Sbjct: 161 AGAEESGGRPA------------VAAPGR----------IVLLTSGTTGKPKGVPRAPQL 198
Query: 398 YYFLGGAIAY--QIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYF 455
+G + + RT R +P++H G M + + G V+ + F A
Sbjct: 199 RSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLM-LTIALGGTVLTHRHFDAEAAL 257
Query: 456 SDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHN------VRLMFGNGLRPQIWSEFVDR 509
+ ++ + + +L P P +A N V + G+ L P + F+D
Sbjct: 258 AQASLHRADAFTAVPVVLARILELP--PRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDT 315
Query: 510 FRIAQIGEFYGATE-GMAAI 528
+ + YG+TE G+ A+
Sbjct: 316 YGDI-LYNGYGSTEVGIGAL 334
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 41.6 bits (98), Expect = 0.001
Identities = 55/238 (23%), Positives = 91/238 (38%), Gaps = 62/238 (26%)
Query: 234 WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLR 293
++ Q+++ S R AN + G+ KG+ V +L PE LG KLG +
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYG------- 53
Query: 294 QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFS-WSPDTDSSSSPVPRSQAL 352
LFS + P+ P+ L
Sbjct: 54 -------------------------------------PLFSAFGPE------PIRDRLEL 70
Query: 353 SPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR---YYFLGGAIAYQI 409
++V + P L R +D + +TSGTTG PK V+ HR ++ Y +
Sbjct: 71 GE--AKVLITTPELYERTDPEDPALLHFTSGTTGKPK-GVLHVHRAVVAHYATA--RYVL 125
Query: 410 GFRTKDRFY-TPLPLYHTAGGAMCIGQALIFGCCVVIRK-KFSASNYFSDVCKYKCTV 465
R D ++ T P + T G + I L+ G +V+ + +F A ++ + + K TV
Sbjct: 126 DLRPDDVYWCTADPGWVT-GTSYGIIAPLLNGVTLVVDEGEFDAERWYGILEEEKVTV 182
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 42.0 bits (99), Expect = 0.001
Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 51/209 (24%)
Query: 198 WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKK 257
A V + T++ + + A ++P+ +++ +++ +AN +G+K
Sbjct: 448 VNATAVEIPETTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKP 507
Query: 258 GDSVALMLENRPEFVCLWL------GLSKLGVITALINHNLR------QNSLLHCINIAG 305
GDSVA+ L R F+ L L G + L + T + L+ + SLL
Sbjct: 508 GDSVAVALP-RSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLL------- 559
Query: 306 VSAFIYGAELTDAVQEISTSLGSNVKLFSW-SPDTDSSSSPVPRSQALSPLLSEVPTSPP 364
+T A Q + ++ + +P ++P+ SQ P
Sbjct: 560 ---------ITTADQLPRFADVPDLTSLCYNAPLAPQGAAPLQLSQ------------PH 598
Query: 365 SLSYRVGVQDKLIYIYTSGTTGLPKAAVI 393
+Y I+TSG+TG PK ++
Sbjct: 599 HTAY---------IIFTSGSTGRPKGVMV 618
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 41.2 bits (96), Expect = 0.002
Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 28/164 (17%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T Q+ + R+ +GL GD V L L + P+ V L L GV+ L N L +
Sbjct: 32 THGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHR 91
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354
+ + + + + + F S +++
Sbjct: 92 DD--------------HALAARNTEPALVVTSDALRDRFQPSRVAEAAE----------- 126
Query: 355 LLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRY 398
L+SE P +G YTSGTTG PKAA+ HR+
Sbjct: 127 LMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAI---HRH 167
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 41.1 bits (97), Expect = 0.002
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 26/189 (13%)
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVS--- 307
L + G++V +ML N + L G + A+IN + ++L A V
Sbjct: 675 LKKNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKAAQVKTVL 734
Query: 308 ---AFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL----SPLLSEVP 360
AFI A L ++ + +++ + D + + + L PL+
Sbjct: 735 TSRAFIEKARLGPLIEALEFG----IRII-YLEDVRAQIGLADKIKGLLAGRFPLVYFCN 789
Query: 361 TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGA-IAYQIGFRTKDRFYT 419
P D + ++TSG+ G PK V+S HR A +A +I F +D+ +
Sbjct: 790 RDP---------DDPAVILFTSGSEGTPKGVVLS-HRNLLANRAQVAARIDFSPEDKVFN 839
Query: 420 PLPLYHTAG 428
LP++H+ G
Sbjct: 840 ALPVFHSFG 848
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 40.8 bits (96), Expect = 0.002
Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 50/240 (20%)
Query: 210 IADIFREHAVRSPNKVIFM----FEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDS 260
I DIF ++A + P++ + F + +T +Q+ SN +A++ L G+K+GD
Sbjct: 238 IHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDV 297
Query: 261 VALMLENRPEFVCLWLGLSKLGVITALINHNL---RQNSLLHC------INI--AG---- 305
V + + V +G+ K G ++I+ RQ L I I AG
Sbjct: 298 VMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQ 357
Query: 306 -VSAFIYGAELTDAVQEI-STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV---P 360
V +I EL + EI + +L + L S + + P QAL + V P
Sbjct: 358 LVRDYIDK-EL-ELRTEIPALALQDDGSLVGGSLEGGETDVLAP-YQALKDTPTGVVVGP 414
Query: 361 TSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNH---RYYFLGGAIAYQIGFRTKDRF 417
S P+LS +TSG+ G+PK V+ H YYF +A + G D+F
Sbjct: 415 DSNPTLS------------FTSGSEGIPK-GVLGRHFSLAYYF--PWMAKRFGLSENDKF 459
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 40.3 bits (95), Expect = 0.002
Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 30/182 (16%)
Query: 216 EHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275
E A P+ + + + T Q++ S+ +A F + L + + PE + +
Sbjct: 10 EFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATF 69
Query: 276 LGLSKLGVITALINHNLRQNSLLHC-INIAGVSAFIYGAELTDAVQEIS-TSLGSNVKLF 333
LG K G H I + S AE + + E++ SL +
Sbjct: 70 LGAVKAG----------------HAYIPVDVSSP----AERIEMIIEVAKPSL-----II 104
Query: 334 SWSP-DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV 392
+ + PV L + + P + V D I+TSGTTG PK
Sbjct: 105 ATEELPLEILGIPVITLDELKDIFATGN--PYDFDHAVKGDDNYYIIFTSGTTGKPKGVQ 162
Query: 393 IS 394
IS
Sbjct: 163 IS 164
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 40.3 bits (95), Expect = 0.003
Identities = 61/251 (24%), Positives = 92/251 (36%), Gaps = 50/251 (19%)
Query: 218 AVRSPNKVIFMFENT--EW-------TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 268
A +P++V EW +QV A +A L GL + ++ N
Sbjct: 5 ARETPDRVFLAERRGGGEWRRVTYAEALRQVRA----IAQALLDLGLSAERPLMILSGNS 60
Query: 269 PEFVCLWLGLSKLGVITA-------LINHNLRQNSLLHCINIAGVSAFIY---GAELTDA 318
E L L GV A L++ + + L H ++ ++ GA A
Sbjct: 61 IEHALLALAAMYAGVPVAPVSPAYSLLSKDFAK--LRHIFDLL-TPGAVFAEDGAAFARA 117
Query: 319 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSY-RVGVQDKLI 377
+ + G V + + +P + A + LL+ PT+ ++ VG
Sbjct: 118 LAAL-GLAG--VPVVA------VRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAK 168
Query: 378 YIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTP--------LPLYHTAGG 429
Y++TSG+TGLPK AVI+ HR L A F T LP HT GG
Sbjct: 169 YLFTSGSTGLPK-AVINTHR--MLCANQAMIAQCW---PFLTEEPPVLVDWLPWNHTFGG 222
Query: 430 AMCIGQALIFG 440
L G
Sbjct: 223 NHNFNMVLYNG 233
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 39.8 bits (93), Expect = 0.003
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Query: 215 REHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ-GLKKGDSVALMLENRPEFVC 273
H R FE T WT Q + +NR+A+ + G+ G+ V L N P V
Sbjct: 43 HVHNGRGNRPCFRTFEET-WTYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVA 101
Query: 274 LWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
WL + K G I LR L ++ A ++ + LT A
Sbjct: 102 CWLAVLKAGAIVVTTMPLLRAKELTTIVDKARITHALCDKRLTAA 146
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 39.9 bits (94), Expect = 0.004
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 217 HAVRSPNKVIFMFENTEWTAQQVEAYS------NRVANFFLAQGLKKGDSVALMLENRPE 270
H P+KV ++E E + Y R AN + G+KKGD VA+ + PE
Sbjct: 66 HLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPE 125
Query: 271 FVCLWLGLSKLGVITALI 288
L +++G I +++
Sbjct: 126 AAIAMLACARIGAIHSVV 143
Score = 31.4 bits (72), Expect = 1.4
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 370 VGVQDKLIYIYTSGTTGLPKAAVISNHRY--YFLGGAIAYQIGFRTKD 415
+ +D L +YTSG+TG PK + H Y L A+ + F KD
Sbjct: 233 MDSEDPLFILYTSGSTGKPKGVL---HTTGGYLLYAAMTMKYVFDIKD 277
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 39.8 bits (94), Expect = 0.004
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 222 PNKVIFMFE------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLW 275
NKV ++E + T +++ R AN + G+KKGD VA+ + PE
Sbjct: 61 GNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAM 120
Query: 276 LGLSKLGVI 284
L +++G I
Sbjct: 121 LACARIGAI 129
Score = 31.7 bits (73), Expect = 1.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 374 DKLIYIYTSGTTGLPKAAV 392
D L +YTSG+TG PK V
Sbjct: 226 DPLFILYTSGSTGKPKGVV 244
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 39.2 bits (92), Expect = 0.005
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 20/73 (27%)
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-------GFRTKDRFYTPLPLYHTAG--- 428
+YTSGTTG PK V+S AIA + + D LPL+H G
Sbjct: 134 VYTSGTTGPPKGVVLSRR-------AIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVL 186
Query: 429 ---GAMCIGQALI 438
G + IG +
Sbjct: 187 GVLGPLRIGNRFV 199
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 39.2 bits (92), Expect = 0.007
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 348 RSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAY 407
R ++ LL+ P P G D + TSG+TG PKA I++ Y A+
Sbjct: 131 RVLTVADLLAADPIDPVE----TGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFV 186
Query: 408 QIGFRT-KDRFYTPLPLYHTAG--GAMCIGQALIFGCCVV 444
F D + LPL+H G G + + + FG +V
Sbjct: 187 AAEFDVETDVMVSWLPLFHDMGMVGFLTV--PMYFGAELV 224
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 39.2 bits (92), Expect = 0.007
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 16/191 (8%)
Query: 219 VRSPNKVIFMFENTEWTAQQVEAYS---NRVANF---FLAQGLKKGDSVALMLENRPEFV 272
V+ + E T + + Y+ R+ NF GL KG +VA+ E R E++
Sbjct: 101 VKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWL 160
Query: 273 CLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE----LTDAVQEISTSLGS 328
G+ ++ A + NL +++L + + A + + L ++ +
Sbjct: 161 ASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTT 220
Query: 329 NVKLFSWSPDTDSSSSPV-PRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTG 386
+ L S D+ + + ++ S P ++ D L I YTSGTTG
Sbjct: 221 IIYLDSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIP---ENNDDLALIMYTSGTTG 277
Query: 387 LPKAAVISNHR 397
PK V+ H
Sbjct: 278 DPK-GVMHTHG 287
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 38.7 bits (90), Expect = 0.008
Identities = 62/280 (22%), Positives = 103/280 (36%), Gaps = 57/280 (20%)
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLG 277
AV P + + + +T Q R+A+ + + G +VA++ N P ++
Sbjct: 30 AVVHPTRKSVVHGSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIP---AMYEA 86
Query: 278 LSKLGVITALINHNLRQNSLLHCINI---AGVSAFIYGAELTDAV---QEISTSLGSNVK 331
GV A ++++C+NI A AF+ ++ V QE T +K
Sbjct: 87 --HFGVPMA--------GAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALK 136
Query: 332 LFSWSPDTDSSSSPVPRSQALSPLL---SEVPTSPPSLSYRVG----------------- 371
+ + SS P PLL + P SL Y +G
Sbjct: 137 I--LAEKKKSSFKP--------PLLIVIGDPTCDPKSLQYALGKGAIEYEKFLETGDPEF 186
Query: 372 ----VQDKLIYI---YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLY 424
D+ I YTSGTT PK V+ + Y + + A G + LP++
Sbjct: 187 AWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMF 246
Query: 425 HTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCT 464
H G A + G + +R + +A +S + Y T
Sbjct: 247 HCNGWCFTWTLAALCGTNICLR-QVTAKAIYSAIANYGVT 285
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 38.5 bits (90), Expect = 0.009
Identities = 60/241 (24%), Positives = 91/241 (37%), Gaps = 43/241 (17%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTE-----WTAQQVEAYSNRVANFFLAQGLKKGDSVA 262
L I+ + HA R + E +T + E + ++A A G++ GD V
Sbjct: 10 LLISSLI-AHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVG 68
Query: 263 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 322
+ N + + G+S G + IN L + + +N A ++ V +
Sbjct: 69 TLAWNGYRHLEAYYGVSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDAL 128
Query: 323 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYR--VGVQDKLIY-- 378
+ NVK W TD++ P S P L Y VG QD Y
Sbjct: 129 APQC-PNVK--GWVAMTDAAHLP--------------AGSTPLLCYETLVGAQDG-DYDW 170
Query: 379 -----------IYTSGTTGLPKAAVISNHRYYFL---GGAIAYQIGFRTKDRFYTPLPLY 424
YTSGTTG PK A+ S HR L G A+ +G +D +P++
Sbjct: 171 PRFDENQASSLCYTSGTTGNPKGALYS-HRSTVLHAYGAALPDAMGLSARDAVLPVVPMF 229
Query: 425 H 425
H
Sbjct: 230 H 230
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 37.7 bits (88), Expect = 0.015
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 378 YIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQA- 436
Y +T GTTG PK A S+ A G D LPL+H GGA+ G A
Sbjct: 7 YFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHV-GGAIVTGLAP 65
Query: 437 LIFGCCVVI------RKKFSASNYFSDVCKYKCTV 465
L G VV+ R +N++ V +Y+ T+
Sbjct: 66 LARGATVVLPTPSGFRNPAVVANFWKIVERYRVTL 100
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 37.6 bits (88), Expect = 0.016
Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 31/176 (17%)
Query: 374 DKLIYIYTSGTTGLPKAAVISNHRYY--FLGGA-----------IAYQIGFRTKD-RFYT 419
D L +YT GTTG+PK + + LGG +A Q+ RF
Sbjct: 4 DDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLP 63
Query: 420 PLPLYHTAGGAMCIGQALIFGCCVVI--RKKFSASNYFSDVCKYKCTVGQYIGE-MCRYL 476
PL H AG + + AL G VV+ KF + V K++ +G+ R L
Sbjct: 64 ACPLMHGAGQWLALS-ALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPL 122
Query: 477 LSTPEKPEDKAHNVRLMFG---NGLRPQIWSEFVDRFRIAQ-----IGEFYGATEG 524
L E +++ + +G +WS V + + + + GA+E
Sbjct: 123 LEALEAAGR--YDLSSLRAISSSGA---MWSPEVKQGLLELLPNLALVDALGASET 173
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 37.9 bits (89), Expect = 0.017
Identities = 48/194 (24%), Positives = 64/194 (32%), Gaps = 79/194 (40%)
Query: 378 YIYTSGTTGLPKAAVISNHR------------YYFLGGAIAYQIGFRTKDRFYTP----- 420
+++TSG+TGLPK AVI+ HR + FL P
Sbjct: 214 FLFTSGSTGLPK-AVINTHRMLCANQQMLAQTFPFLA---------------EEPPVLVD 257
Query: 421 -LPLYHTAGGAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYL--- 476
LP HT GG +G L G + Y D K T G E R L
Sbjct: 258 WLPWNHTFGGNHNLGIVLYNG----------GTLYIDD---GKPTPGG-FDETLRNLREI 303
Query: 477 -----LSTP----------EKPEDKAHN----VRLMF--GNGLRPQIWSEFVDRFRIAQI 515
+ P E+ ++L+F G L +W + +DR A
Sbjct: 304 SPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVW-DRLDRVAEATC 362
Query: 516 GEF------YGATE 523
GE G TE
Sbjct: 363 GERIRMMTGLGMTE 376
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 37.6 bits (88), Expect = 0.019
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 218 AVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFV----- 272
A + P++ + T +++ ++R+A LA G + GD VA+ P+
Sbjct: 1 AAKHPDRPALVVGGDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILA 60
Query: 273 CLWLG 277
CL G
Sbjct: 61 CLKAG 65
Score = 34.1 bits (79), Expect = 0.21
Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 13/78 (16%)
Query: 343 SSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHR--YY 399
S P R + P +L V D L YI +TSG+TG PK IS H
Sbjct: 74 SQPAERIAKILEA-----AGPAAL---VADPDDLAYILFTSGSTGKPKGVQIS-HANLAS 124
Query: 400 FLGGAIAYQIGFRTKDRF 417
FL + D F
Sbjct: 125 FLDWMVED-FDLTEGDVF 141
Score = 29.1 bits (66), Expect = 7.3
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 114 RCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLY 173
R P G++V + P + GY+N + K F + +GDL+ ++ G L
Sbjct: 291 RPVPPGEEGELVIAGPQVS-PGYLNNPEKTAKAFFQDEGQR--WYRTGDLVYLEDDGLLV 347
Query: 174 FKDRT 178
+ R
Sbjct: 348 YLGRK 352
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 36.9 bits (86), Expect = 0.028
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 374 DKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG 428
D + +I ++SG+TG PK ++++ AI ++D F + +PL H G
Sbjct: 106 DDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTHDMG 161
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 37.0 bits (86), Expect = 0.030
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 352 LSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI-- 409
L P L++V P +D + ++TSG+ G PK V S H+ A QI
Sbjct: 353 LMPRLAQVKQQP---------EDAALILFTSGSEGHPKGVVHS-HKSLL---ANVEQIKT 399
Query: 410 --GFRTKDRFYTPLPLYHTAG 428
F DRF + LPL+H+ G
Sbjct: 400 IADFTPNDRFMSALPLFHSFG 420
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 36.5 bits (85), Expect = 0.040
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 17/202 (8%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQ 294
T + A R+A+ +G+ +GD+VA++L N P V G+ G + +N L
Sbjct: 45 TWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDA 104
Query: 295 NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSP 354
S+ + I E + +E + +L K D P + +
Sbjct: 105 ASIAFMLRHGEAKVLIVDTEFAEVARE-ALALLPGPKPLV----IDVDDPEYPGGRFIGA 159
Query: 355 LLSE--VPTSPPSLSYRVGVQDKLIYI---YTSGTTGLPKAAVISNHRYYFL---GGAIA 406
L E + + P ++ + D+ I YTSGTTG PK V+ +HR +L +A
Sbjct: 160 LDYEAFLASGDPDFAWTLP-ADEWDAIALNYTSGTTGNPK-GVVYHHRGAYLNALSNILA 217
Query: 407 YQIGFRTKDRFYTPLPLYHTAG 428
+ + +T LP++H G
Sbjct: 218 WGMPKHPV-YLWT-LPMFHCNG 237
Score = 30.3 bits (69), Expect = 3.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 158 FLSGDLLVMDKWGYLYFKDRTGD 180
F +GDL V+ GY+ KDR+ D
Sbjct: 418 FHTGDLAVLHPDGYIKIKDRSKD 440
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 36.4 bits (85), Expect = 0.046
Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 36/186 (19%)
Query: 223 NKVIFMF----ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGL 278
+KV + ++T ++++ SN+ AN G++KGD V + + PE LG
Sbjct: 59 DKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGA 118
Query: 279 SKLG-VITALINHNLRQNSLLHCINIAGVSAFIYGA-----ELTDAVQEISTSLGSNVKL 332
K G ++ L AF+ A E ++A I+T K
Sbjct: 119 LKNGAIVGPLF------------------EAFMEEAVRDRLEDSEAKVLITTPALLERKP 160
Query: 333 FSWSPD------TDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTG 386
P P + + L+ + +D I YTSG+TG
Sbjct: 161 ADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDEFDIEW--TDREDGAILHYTSGSTG 218
Query: 387 LPKAAV 392
PK +
Sbjct: 219 KPKGVL 224
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 36.4 bits (85), Expect = 0.048
Identities = 41/166 (24%), Positives = 64/166 (38%), Gaps = 40/166 (24%)
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGG---AIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435
I++SG+ G PK ++S+H + I+ R D + LP +H+
Sbjct: 788 IFSSGSEGEPKGVMLSHHN---ILSNIEQISDVFNLRNDDVILSSLPFFHS--------- 835
Query: 436 ALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCR-----YLLSTPE--------- 481
FG V + V T I ++ LL TP
Sbjct: 836 ---FGLTVTLW--LPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNK 890
Query: 482 --KPEDKAHNVRL-MFG-NGLRPQIWSEFVDRFRIAQIGEFYGATE 523
P A ++RL + G L+P++ F ++F I +I E YGATE
Sbjct: 891 KLHPLMFA-SLRLVVAGAEKLKPEVADAFEEKFGI-RILEGYGATE 934
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 36.2 bits (84), Expect = 0.051
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
++AD+ E + ++ F+ T +++ S +A + ++GL KG VA+M+ N
Sbjct: 24 SLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPN 82
Score = 30.0 bits (68), Expect = 4.9
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 135 GYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 180
GY N D K+ T D F +GD+ VMD+ GY DR D
Sbjct: 419 GYWNRPDETAKVMTA-----DGFFRTGDVGVMDERGYTKIVDRKKD 459
Score = 29.6 bits (67), Expect = 6.0
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 380 YTSGTTGLPKAAVISNHRYYF---LGGAIAYQIGFRTKDR-----FYTPLPLYH 425
YT GTTG+ K A + HR L Q F K R F LPLYH
Sbjct: 211 YTGGTTGVSKGATLL-HRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYH 263
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 35.7 bits (83), Expect = 0.075
Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 13/168 (7%)
Query: 235 TAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALI-----N 289
T ++ +R+A G+ KGD V + + PE V L +++G I +++ +
Sbjct: 75 TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFAS 134
Query: 290 HNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDT----DSSSSP 345
L + V+A +G E V L ++L P + P
Sbjct: 135 KELASR-IDDAKPKLIVTA-SFGIE-PGRVVPYKPLLDKALELSQHKPHKVLILNRGQVP 191
Query: 346 VPRSQALSPLLSE-VPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAV 392
P +E + + P V D L +YTSGTTG PK V
Sbjct: 192 APLKPGRDLDWAELMAKARPVDCVPVESTDPLYILYTSGTTGKPKGVV 239
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 34.5 bits (79), Expect = 0.16
Identities = 16/68 (23%), Positives = 31/68 (45%)
Query: 230 ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALIN 289
+ T +Q+ N A+ A G+ +GD V + + E V L +++G I +++
Sbjct: 80 QERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVF 139
Query: 290 HNLRQNSL 297
+SL
Sbjct: 140 GGFASHSL 147
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 34.6 bits (79), Expect = 0.17
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 358 EVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQIG-----FR 412
++P S D +YTSGTTG PK +ISN L + +
Sbjct: 216 DLPIKKKS--------DICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALT 267
Query: 413 TKDRFYTPLPLYH 425
KD + + LPL H
Sbjct: 268 VKDVYLSYLPLAH 280
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 34.3 bits (79), Expect = 0.19
Identities = 53/211 (25%), Positives = 79/211 (37%), Gaps = 58/211 (27%)
Query: 254 GLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--- 310
GLKKGD VALM+ N ++ G+ + G+I +N L H +N +G A +
Sbjct: 70 GLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVS 129
Query: 311 -YGAELTDAVQE------ISTSLGSNVKLFSWSPDTDSSSSP--------VPRSQALSPL 355
+ L V + I T +G D S+ V + L
Sbjct: 130 NFAHTLEKVVFKTPVKHVILTRMG------------DQLSTAKGTLVNFVVKYIKRL--- 174
Query: 356 LSEVPTS--PPSLSYRVGVQD--KLIYI-------------YTSGTTGLPKAAVISNHRY 398
VP P ++S+R + ++ Y+ YT GTTG+ K A+++ HR
Sbjct: 175 ---VPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLT-HRN 230
Query: 399 Y---FLGGAIAYQIGFRTKDRF-YTPLPLYH 425
AY T LPLYH
Sbjct: 231 MLANLEQAKAAYGPLLHPGKELVVTALPLYH 261
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 33.8 bits (78), Expect = 0.30
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 374 DKLIY-IYTSGTTGLPKAAVISNHR 397
D L Y IYTSG+TG PK I HR
Sbjct: 105 DDLAYVIYTSGSTGRPKGVAIE-HR 128
Score = 33.0 bits (76), Expect = 0.49
Identities = 16/73 (21%), Positives = 32/73 (43%)
Query: 210 IADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP 269
+ ++ A R+P+ + + + T ++ +NR+A A G+ V + L P
Sbjct: 1 LHELVEAQAERTPDAIAVVCGDESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSP 60
Query: 270 EFVCLWLGLSKLG 282
+ V L + K G
Sbjct: 61 DLVVALLAVLKAG 73
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 33.6 bits (78), Expect = 0.39
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 244 NRVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVI 284
R AN + G+KKGD VA+ + PE L +++G +
Sbjct: 109 CRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 32.4 bits (74), Expect = 0.68
Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 33/243 (13%)
Query: 210 IADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQ--GLKKGDSVALMLEN 267
I + ++ R +K F T ++ S A + L Q LK GD +A+ L N
Sbjct: 26 IQAVLKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAW-LQQHTDLKPGDRIAVQLPN 84
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 327
++ G + G+I N + H N +G A + A + +++ G
Sbjct: 85 VLQYPVAVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTG 144
Query: 328 SNVKLFSWSPDTDSSSSPVPR---SQALSPLLSEVPTS--PPSLSYR------------- 369
+ + D P+ R + + + VP P ++ +
Sbjct: 145 VKHVIVTEVADM---LPPLKRLLINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTE 201
Query: 370 --VGVQDKLIYIYTSGTTGLPKAAVISNHRYYF-----LGGAIAYQIGFRTKDRFYTPLP 422
D + YT GTTG+ K A+++ HR + + + PLP
Sbjct: 202 ANPQADDVAVLQYTGGTTGVAKGAMLT-HRNLVANMLQCRALMGSNLN-EGCEILIAPLP 259
Query: 423 LYH 425
LYH
Sbjct: 260 LYH 262
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 32.8 bits (75), Expect = 0.69
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 379 IYTSGTTGLPKAAVISNHRYYF 400
+YTSGT+G PK ++SN Y
Sbjct: 310 VYTSGTSGKPKGVMLSNKNLYN 331
Score = 31.2 bits (71), Expect = 1.8
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 135 GYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRT 178
GY EK+ K FT+ D F +GD++ ++K G L F DR+
Sbjct: 554 GYFLEKEQTKNAFTE-----DGYFKTGDIVQINKNGSLTFLDRS 592
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 32.4 bits (74), Expect = 0.85
Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 55/233 (23%)
Query: 225 VIFMFENTEWTA---QQVEAYSNRVANFFLAQGLKKGDSVALMLENRP--EFVC----LW 275
V+ E+ W +V + VA A+ L + A+ L P E V W
Sbjct: 20 VVLDRESGLWRRHPWPEVHGRAENVA----ARLLDRDRPGAVGLVGEPTVELVAAIQGAW 75
Query: 276 LGLSKLGVITALI-NHNLRQ---NSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVK 331
L + + ++ + + + +L I + +G+ L + ++ + +S+
Sbjct: 76 LAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHL-ERLRAVDSSV----- 129
Query: 332 LFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK-- 389
+ ++++ RS +L+P + P++ +Q T+G+TG P+
Sbjct: 130 ----TVHDLATAAHTNRSASLTP----PDSGGPAV-----LQG------TAGSTGTPRTA 170
Query: 390 ----AAVISNHRYYFLGGAIAYQIGF-RTKDRFYTPLPLYHTAGGAMCIGQAL 437
AV+SN R + ++G D + LPLYH G A + AL
Sbjct: 171 ILSPGAVLSNLR------GLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAAL 217
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 32.1 bits (73), Expect = 0.93
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 19/59 (32%)
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQI------------GFRTKDRFYTPLPLYH 425
+YTSGTTG PK +++N AI ++ +D +++ LPL H
Sbjct: 226 MYTSGTTGEPKGVILTN-------RAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAH 277
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 31.8 bits (72), Expect = 1.4
Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 16/186 (8%)
Query: 245 RVANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSL------- 297
++AN+ G+KKGD+V + L E L +++G + +++ SL
Sbjct: 132 QLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDC 191
Query: 298 -----LHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQAL 352
+ C + I ++ DA + S G +V + + + + Q
Sbjct: 192 KPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEG 251
Query: 353 SPLLSE--VPTSPPSLSYR-VGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIAYQI 409
+ + VP P V +D L +YTSG+TG PK V+ Y + A ++
Sbjct: 252 RDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPK-GVLHTTGGYMVYTATTFKY 310
Query: 410 GFRTKD 415
F K
Sbjct: 311 AFDYKP 316
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 31.6 bits (72), Expect = 1.6
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 376 LIYIYTSGTTGLPKAAVISN 395
L +YTSGTTG KA V SN
Sbjct: 257 LYILYTSGTTGNSKAVVRSN 276
>gnl|CDD|221997 pfam13233, Complex1_LYR_2, Complex1_LYR-like. This is a family of
proteins carrying the LYR motif of family Complex1_LYR,
pfam05347, likely to be involved in Fe-S cluster
biogenesis in mitochondria.
Length = 97
Score = 28.6 bits (64), Expect = 2.9
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 188 RALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAY 242
R L +Y ++ + FR HA + +++ F E + AY
Sbjct: 10 RELPKYPLRYNLLSSLSLGRRYVRKEFRRHAGATDDELAKEFLQ-EA--ENYLAY 61
>gnl|CDD|221799 pfam12833, HTH_18, Helix-turn-helix domain.
Length = 80
Score = 28.3 bits (64), Expect = 2.9
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 174 FKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADI 213
FK TG + + R LR A R + + L++ +I
Sbjct: 16 FKRETGLSP-----KEYLRELRLERARRLLLETGLSVTEI 50
>gnl|CDD|147381 pfam05167, DUF711, Uncharacterized ACR (DUF711). The proteins in
this family are functionally uncharacterized. The
proteins are around 450 amino acids long. It is likely
that this family represents a group of
glycerol-3-phosphate dehydrogenases.
Length = 390
Score = 30.3 bits (69), Expect = 3.0
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 17/85 (20%)
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGV-----ITALINHNLRQNSLLHCINIAG 305
LA GDSVA +LE G KLG AL+N +++ + + G
Sbjct: 248 LAPSPWVGDSVAEILEEM--------GGEKLGAPGTTAALALLNDAVKKGGAMASSKVGG 299
Query: 306 VS-AFIYGAE---LTDAVQEISTSL 326
+S AFI +E L + V E + +L
Sbjct: 300 LSGAFIPVSEDAGLIERVAEGALTL 324
>gnl|CDD|213069 cd11753, GH94N_ChvB_NdvB_2_like, Second GH94N domain of cyclic beta
1-2 glucan synthetase and similar domains. The
glycoside hydrolase family 94 (previously known as
glycosyltransferase family 36) includes cyclic beta 1-2
glucan synthetase (EC:2.4.1.20) or ChvB (encoded by the
chromosomal chvB virulence gene). This second of two
tandemly repeated GH94-N-terminal-like domains has not
been characterized functionally. Some beta 1-2 glucan
synthetases are annotated as NdvB (nodule development B)
gene products, glycosyltransferases required for the
synthesis of cyclic beta-(1,2)-glucans, which play a
role in interactions between bacteria and plants.
Length = 336
Score = 30.2 bits (69), Expect = 3.0
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 347 PRSQALSPLLSE-VPTSPPSLS----------YRVGVQDKLIYIYTSGTTGLPKAAVISN 395
PR QA LL E +P P ++ + + + +T+ T LP+ ++SN
Sbjct: 9 PRIQAAELLLQERIPREVPIITPRLEELSRPAKKEEEAPEPVRRFTTPDTALPEVHLLSN 68
Query: 396 HRY 398
RY
Sbjct: 69 GRY 71
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated.
Length = 578
Score = 30.7 bits (70), Expect = 3.1
Identities = 24/92 (26%), Positives = 31/92 (33%), Gaps = 17/92 (18%)
Query: 362 SPPSLSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHRYYF------LGGAIAYQIGFRTK 414
SP R Y+ YTSG+T P ++S HR + G
Sbjct: 148 SPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVS-HRNVIANFEQLMSDYFGDTGGVPPP 206
Query: 415 DR-FYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
D + LP YH G L+ G C I
Sbjct: 207 DTTVVSWLPFYHDMG--------LVLGVCAPI 230
>gnl|CDD|238950 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a
subfamily of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases
superfamily includes N type ATP PPases and ATP
sulphurylases. It forms a apha/beta/apha fold which
binds to Adenosine group. This domain has a strongly
conserved motif SGGXD at the N terminus.
Length = 185
Score = 29.5 bits (67), Expect = 3.5
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 14/76 (18%)
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITAL-INHNLRQNSLL---HCINIAGVSAFIYGAE 314
DS+AL+ + L + A+ ++H LR S ++ G
Sbjct: 11 DSMALL------HLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVADL----CAKLGIP 60
Query: 315 LTDAVQEISTSLGSNV 330
L V ++ G N+
Sbjct: 61 LYILVVALAPKPGGNL 76
>gnl|CDD|176557 cd08620, PI-PLCXDc_like_1, Catalytic domain of uncharacterized
hypothetical proteins similar to eukaryotic
phosphatidylinositol-specific phospholipase C, X domain
containing proteins. This subfamily corresponds to the
catalytic domain present in a group of uncharacterized
hypothetical proteins found in bacteria and fungi, which
are similar to eukaryotic phosphatidylinositol-specific
phospholipase C, X domain containing proteins
(PI-PLCXD). The typical eukaryotic
phosphoinositide-specific phospholipase C (PI-PLC, EC
3.1.4.11) has a multidomain organization that consists
of a PLC catalytic core domain, and various regulatory
domains. The catalytic core domain is assembled from two
highly conserved X- and Y-regions split by a divergent
linker sequence. In contrast, eukaryotic PI-PLCXDs
contain a single TIM-barrel type catalytic domain, X
domain, and are more closely related to bacterial
PI-PLCs, which participate in Ca2+-independent PI
metabolism, hydrolyzing the membrane lipid
phosphatidylinositol (PI) to produce phosphorylated
myo-inositol and diacylglycerol (DAG). Although the
biological function of eukaryotic PI-PLCXDs still
remains unclear, it may distinct from that of typical
eukaryotic PI-PLCs.
Length = 281
Score = 29.7 bits (67), Expect = 4.2
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 21/115 (18%)
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLR--QNSLLHCINIAGVSA---FIYGA 313
D V + N E V + + N R ++ + A SA ++
Sbjct: 85 DVVTFLKANPTEIVVVHITWDGFD------NDCARPSAQEVVEALAQALASAKVGYVTSG 138
Query: 314 ELTDAVQEISTSLGSNVKLF----------SWSPDTDSSSSPVPRSQALSPLLSE 358
++D + + +L S+S + ++S P P AL+ +L+E
Sbjct: 139 TVSDLAASYAQLRQTGKRLIVLFGDADKYDSYSDEDYATSDPQPIIDALNKMLAE 193
>gnl|CDD|222164 pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain. This
family contains proteins with N-acetyltransferase
functions.
Length = 144
Score = 28.8 bits (65), Expect = 4.9
Identities = 10/46 (21%), Positives = 16/46 (34%)
Query: 396 HRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGC 441
+ G +A +G R R Y L Y + G L++
Sbjct: 76 YVLRLDGEPVAAVLGLRDGGRLYYYLGGYDPEFARLSPGLLLLWEL 121
>gnl|CDD|177741 PLN00130, PLN00130, succinate dehydrogenase (SDH3); Provisional.
Length = 213
Score = 29.3 bits (65), Expect = 5.3
Identities = 15/74 (20%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 312 GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVG 371
GA+LT + + + +G++ +LFS ++ P+ ++ PL + P ++ +
Sbjct: 86 GAQLTRSFRALD--VGTSKRLFSTISGDIKTTQEEPKIKSFRPLSPHLSVYQPQMNSMLS 143
Query: 372 VQDKLIYIYTSGTT 385
+ +++ +Y +G T
Sbjct: 144 IFNRISGVYLTGVT 157
>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional.
Length = 402
Score = 29.6 bits (67), Expect = 5.5
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 299 HCINIAGVSAFIYGAEL--TDAVQEISTSLGSNVKLFSWSPDTDSSSSPVP 347
+N+A + A + AE+ ++ + ++ L +N+ LF T+ S S +P
Sbjct: 282 QSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTEQSGSFLP 332
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases
specifically expressed in nucellar cells during
degradation. Nucellins are important regulators of
nucellar cell's progressive degradation after ovule
fertilization. This degradation is a characteristic of
programmed cell death. Nucellins are plant aspartic
proteases specifically expressed in nucellar cells
during degradation. The enzyme is characterized by
having two aspartic protease catalytic site motifs, the
Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in
the C-terminal region, and two other regions nearly
identical to two regions of plant aspartic proteases.
Aspartic proteases are bilobal enzymes, each lobe
contributing a catalytic Asp residue, with an extended
active site cleft localized between the two lobes of the
molecule. One lobe may be evolved from the other through
ancient gene-duplication event. Although the
three-dimensional structures of the two lobes are very
similar, the amino acid sequences are more divergent,
except for the conserved catalytic site motif.
Length = 273
Score = 29.3 bits (66), Expect = 5.9
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 274 LWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLF 333
L LG K+ + + L + + +N + HC++ G +G +L + T + +
Sbjct: 98 LGLGRGKISLPSQLASQGIIKNVIGHCLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQKK 157
Query: 334 SWSP 337
+SP
Sbjct: 158 HYSP 161
>gnl|CDD|233451 TIGR01531, glyc_debranch, glycogen debranching enzymye. glycogen
debranching enzyme possesses two different catalytic
activities; oligo-1,4-->1,4-glucantransferase (EC
2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site
directed mutagenesis studies in S. cerevisiae indicate
that the transferase and glucosidase activities are
independent and located in different regions of the
polypeptide chain. Proteins in this model belong to the
larger alpha-amylase family. The model covers eukaryotic
proteins with a seed composed of human, nematode and
yeast sequences. Yeast seed sequence is well
characterized. The model is quite rigorous; either query
sequence yields large bit score or it fails to hit the
model altogether. There doesn't appear to be any middle
ground [Energy metabolism, Biosynthesis and degradation
of polysaccharides].
Length = 1464
Score = 29.4 bits (66), Expect = 8.0
Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 23/140 (16%)
Query: 211 ADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQG---LKK-----GDSVA 262
D E P K F+ + W S+ + +F L++ GDSV
Sbjct: 424 KDGSEEKFAYDPEKADFLMAHNGWVMG-----SDPLRDFASPGSRVYLRRELICWGDSVK 478
Query: 263 LMLENRPE-FVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAE-LTDAVQ 320
L N+PE LW + + +TA I +R ++ H S I+ AE L DA +
Sbjct: 479 LRYGNKPEDSPYLWQHMKEYTEMTARIFDGVRIDN-CH-------STPIHVAEYLLDAAR 530
Query: 321 EISTSLGSNVKLFSWSPDTD 340
+ + +L +LF+ S D
Sbjct: 531 KYNPNLYVVAELFTGSETLD 550
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 28.9 bits (65), Expect = 8.1
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 22/58 (37%)
Query: 381 TSGTTGLPKAAVIS----------NHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG 428
TSGTTG PK A+++ H LGG ++ LP +H AG
Sbjct: 43 TSGTTGTPKGAMLTAAALTASADATHDR--LGGP----------GQWLLALPAHHIAG 88
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible
isomerization of citrate and isocitrate as part of the
TCA cycle. Mitochondrial aconitase A catalytic domain.
Aconitase (also known as aconitate hydratase and citrate
hydro-lyase) catalyzes the reversible isomerization of
citrate and isocitrate as part of the TCA cycle.
Cis-aconitate is formed as an intermediary product
during the course of the reaction. In eukaryotes two
isozymes of aconitase are known to exist: one found in
the mitochondrial matrix and the other found in the
cytoplasm. This is the mitochondrial form. The
mitochondrial product is coded by a nuclear gene. Most
members of this subfamily are mitochondrial but there
are some bacterial members.
Length = 412
Score = 28.9 bits (65), Expect = 8.5
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 374 DKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA-YQIGF 411
D LI G L +A I+ Y FL A A Y IGF
Sbjct: 33 DHLIEAQVGGEKDLKRAKDINKEVYDFLASAGAKYGIGF 71
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 28.8 bits (65), Expect = 8.6
Identities = 40/175 (22%), Positives = 53/175 (30%), Gaps = 30/175 (17%)
Query: 372 VQDKLIYIY--TSGTTGLPKAAVISNHRYYFLGGAIAYQ---IGFRTKDRFYTPLPLYHT 426
V + I +SGTTG P + +A G R D+
Sbjct: 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLF 146
Query: 427 AGGAMCIGQALIFGCCVVIRKKFSASNY------FSDVCKYKCTVGQYIGEMCRYLLSTP 480
GG A G V+ S N D +K TV YL
Sbjct: 147 TGGLGLHYGAERIGATVI---PISGGNTERQLELMKD---FKPTVIAATPSYLLYLAEEA 200
Query: 481 EK---PEDKAHNVRLMFGNGLRPQIWSEFVDRFRI-----AQIGEFYGATEGMAA 527
E+ DK + +FG + WSE R I + + YG TEG
Sbjct: 201 EEEGIDPDKLSLKKGIFGA----EPWSE-EMRKVIENRFGCKAFDIYGLTEGFGP 250
>gnl|CDD|233809 TIGR02282, MltB, lytic murein transglycosylase B. This family
consists of lytic murein transglycosylases (murein
hydrolases) in the family of MltB, which is a
membrane-bound lipoprotein in Escherichia coli. The
N-terminal lipoprotein modification motif is conserved
in about half the members of this family. The term Slt35
describes a naturally occurring soluble fragment of
MltB. Members of this family never contain the putative
peptidoglycan binding domain described by pfam01471,
which is associated with several classes of bacterial
cell wall lytic enzymes [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 290
Score = 28.9 bits (65), Expect = 8.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 246 VANFFLAQGLKKGDSVALMLENRP 269
VAN+F A G +GD VA+
Sbjct: 188 VANYFHAHGWVRGDPVAVPATGAA 211
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 29.1 bits (66), Expect = 9.3
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 217 HAVRSPNKVIFMFENTE------WTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 270
H + P ++ + +TE +T +Q+ NR+A + G+++GD V + + E
Sbjct: 62 HLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAE 121
Query: 271 FVCLWLGLSKLGVI 284
L +++G I
Sbjct: 122 AAFAMLACARIGAI 135
>gnl|CDD|153090 cd08025, RNR_PFL_like_DUF711, Uncharacterized proteins with
similarity to Ribonucleotide reductase and Pyruvate
formate lyase. This subfamily contains Streptococcus
pneumoniae Sp0239 and similar uncharacterized proteins.
Sp0239 is structurally similar to ribonucleotide
reductase (RNR) and pyruvate formate lyase (PFL), which
are believed to have diverged from a common ancestor.
RNR and PFL possess a ten-stranded alpha-beta barrel
domain that hosts the active site, and are radical
enzymes. RNRs are found in all organisms and provide the
only mechanism by which nucleotides are converted to
deoxynucleotides. PFL is an essential enzyme in
anaerobic bacteria that catalyzes the conversion of
pyruvate and CoA to acteylCoA and formate.
Length = 400
Score = 28.8 bits (65), Expect = 9.7
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 17/85 (20%)
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLG-----VITALINHNLRQNSLLHCINIAG 305
LA GDSVA +LE +GL ++G AL+N +++ + + G
Sbjct: 270 LAPTPAVGDSVAEILEE--------MGLERVGTHGTTAALALLNDAVKKGGAMATSRVGG 321
Query: 306 VS-AFIYGAE---LTDAVQEISTSL 326
+S AFI +E + +AV+E + +L
Sbjct: 322 LSGAFIPVSEDAGMIEAVREGALTL 346
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.415
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,151,864
Number of extensions: 3208410
Number of successful extensions: 3096
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2946
Number of HSP's successfully gapped: 312
Length of query: 617
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 514
Effective length of database: 6,369,140
Effective search space: 3273737960
Effective search space used: 3273737960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)